TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBN10e11.xg.2.2
(581 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW438564.1|CW438564 fsbb001f156e04k0 Sorghum methylation... 88 3e-038
gb|BI074628.1|BI074628 IP1_13_B09.b1_A002 Immature pannicle... 129 2e-037
gb|CX617235.1|CX617235 GABR1_32_C02.g1_A002 GA- or brassino... 129 3e-037
gb|CX611601.1|CX611601 ANR1_25_D05.g1_A002 Anaerobic roots ... 129 3e-037
gb|CW047335.1|CW047335 104_285_10512671_114_30216 Sorghum m... 90 4e-036
gb|CW047336.1|CW047336 104_285_10512671_114_30218 Sorghum m... 90 4e-036
gb|CF486612.1|CF486612 POL1_38_E10.g1_A002 Pollen Sorghum b... 127 2e-033
gb|CW144784.1|CW144784 104_537_11138124_148_34969_046 Sorgh... 90 7e-029
gb|CW368958.1|CW368958 fsbb001f043c10k0 Sorghum methylation... 54 3e-027
gb|CW386868.1|CW386868 fsbb001f070p13f0 Sorghum methylation... 59 3e-023
gb|CW025326.1|CW025326 104_226_10488128_114_30494 Sorghum m... 55 6e-023
gb|CW391887.1|CW391887 fsbb001f078d24k0 Sorghum methylation... 51 7e-022
>gb|CW438564.1|CW438564 fsbb001f156e04k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f156e04, DNA
sequence
Length = 758
Score = 88.1 bits (186), Expect(4) = 9e-037
Identities = 34/41 (82%), Positives = 37/41 (90%)
Frame = -2 / +3
Query: 304 TFIPFLSPNCSAIKCWCRLMASREVSPGYLKYKHGSMGLKL 182
TFIPFLSPNCSAIKC CRLMASR+VSPGYLKYKHG+ + L
Sbjct: 636 TFIPFLSPNCSAIKCSCRLMASRKVSPGYLKYKHGTKAVNL 758
Score = 87.7 bits (185), Expect(4) = 3e-038
Identities = 33/40 (82%), Positives = 38/40 (95%)
Frame = +3 / -2
Query: 186 FSPILPCLYFRYPGETSREAIKRHQHFMALQLGLKKGMKV 305
F+ ++PCLYFRYPGET REAIKRH+HF+ALQLGLKKGMKV
Sbjct: 754 FTALVPCLYFRYPGETFREAIKRHEHFIALQLGLKKGMKV 635
Score = 68.9 bits (144), Expect(4) = 1e-028
Identities = 28/36 (77%), Positives = 32/36 (88%)
Frame = -1 / +2
Query: 305 NLHTLLEPQL*CHKMLVPLNGFTGSFTRISEIQAWE 198
NLH LLEPQL*C+KML+PL+GFT S T ISEIQAW+
Sbjct: 635 NLHPLLEPQL*CNKMLMPLDGFTESLTWISEIQAWD 742
Score = 67.5 bits (141), Expect(4) = 1e-029
Identities = 28/35 (80%), Positives = 30/35 (85%)
Frame = +1 / -3
Query: 199 SHACISDIRVKLPVKPLSGTSILWHYNWGSRRV*R 303
SHACISDI+V+L VKP SG SIL HYNWGSRR *R
Sbjct: 741 SHACISDIQVRLSVKPSSGMSILLHYNWGSRRG*R 637
Score = 65.2 bits (136), Expect(4) = 1e-025
Identities = 30/36 (83%), Positives = 31/36 (86%)
Frame = -3 / +1
Query: 303 PSYPS*APIVVP*NAGAA*WLHGKFHPDI*NTSMGV 196
PS PS*APIVV *NA AA*WLHGK H DI*NTSMG+
Sbjct: 637 PSSPS*APIVVQ*NAHAA*WLHGKSHLDI*NTSMGL 744
Score = 63.4 bits (132), Expect(4) = 1e-024
Identities = 30/40 (75%), Positives = 33/40 (82%)
Frame = +2 / -1
Query: 185 LQSHTPMLVFQISG*NFP*SH*AAPAFYGTTIGAQEGYEG 304
+ S +PMLVFQIS *+FP*SH AA AFY TTIGAQEG EG
Sbjct: 755 IYSFSPMLVFQISR*DFP*SHQAA*AFYCTTIGAQEGDEG 636
Score = 54.7 bits (113), Expect(4) = 3e-038
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = +2 / -2
Query: 302 GSGRGMWNWGTFNRNCQIQLNFNN 373
GSG GMWNWGTFNRNCQIQ +N
Sbjct: 409 GSGCGMWNWGTFNRNCQIQAMIHN 338
Score = 50.6 bits (104), Expect(4) = 9e-037
Identities = 18/22 (81%), Positives = 21/22 (95%)
Frame = -3 / +3
Query: 363 LS*IWQFLLKVPQFHIPRPEPS 298
++*IWQFLLKVPQFHIP PEP+
Sbjct: 348 IA*IWQFLLKVPQFHIPHPEPA 413
Score = 50.1 bits (103), Expect(4) = 1e-028
Identities = 20/26 (76%), Positives = 23/26 (88%)
Frame = -2 / +2
Query: 379 NPVIEVELNLAISIKGPPIPHPTSRT 302
N +++ LNLAISIKGPPIPHPTSRT
Sbjct: 332 NFIVDHCLNLAISIKGPPIPHPTSRT 409
Score = 48.7 bits (100), Expect(4) = 1e-029
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +3 / -3
Query: 285 LKKGMKVLDVGCGIGGPLIEIARF 356
LK ++VLDVGCGIGGPLIEIARF
Sbjct: 426 LKLLLQVLDVGCGIGGPLIEIARF 355
Score = 46.9 bits (96), Expect(4) = 1e-025
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = -1 / +1
Query: 356 ESGNFY*RSPNSTSHVQNL 300
ESGNFY*RSPNSTSH+QNL
Sbjct: 355 ESGNFY*RSPNSTSHIQNL 411
Score = 46.4 bits (95), Expect(4) = 1e-024
Identities = 18/19 (94%), Positives = 18/19 (94%)
Frame = +1 / -1
Query: 301 RFWTWDVELGDL**KLPDS 357
RFW WDVELGDL**KLPDS
Sbjct: 410 RFWMWDVELGDL**KLPDS 354
Score = 43.7 bits (89), Expect(4) = 3e-038
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = +2 / -2
Query: 347 CQIQLNFNNWIDQQ*LPCLKGQGLHFSLLFGTXKLY 454
C +QL+ +NWI+ Q LP LKGQG +F+ F K +
Sbjct: 262 CLLQLSNDNWIELQRLPDLKGQGFYFTFPFWNKKTF 155
Score = 43.2 bits (88), Expect(4) = 9e-037
Identities = 19/31 (61%), Positives = 22/31 (70%)
Frame = -2 / +2
Query: 448 FXCSKKKAKMQTLPLETW*SLLVNPVIEVEL 356
F K+K K++TLPLE W*SL NPVI EL
Sbjct: 161 FFIPKRKGKIKTLPLEIW*SL*FNPVIIAEL 253
Score = 40.0 bits (81), Expect(4) = 1e-029
Identities = 17/25 (68%), Positives = 18/25 (72%)
Frame = +3 / -3
Query: 357 SSTSITGLTNNDYHVSRGKVCILAF 431
SS ITGL NDY +SRGKV IL F
Sbjct: 252 SSAMITGLNYNDYQISRGKVFILPF 178
Score = 39.6 bits (80), Expect(4) = 1e-028
Identities = 17/26 (65%), Positives = 19/26 (73%)
Frame = -3 / +3
Query: 435 KRRLKCKPCPLRHGSHCWSIQLLKLS 358
K ++K KPCPLR GS C SIQL LS
Sbjct: 174 KGKVK*KPCPLRSGSRCSSIQLSLLS 251
Score = 38.2 bits (77), Expect(4) = 1e-025
Identities = 17/23 (73%), Positives = 20/23 (86%)
Frame = -1 / +1
Query: 437 QKEG*NANLAP*DMVVIVGQSSY 369
+KE *N NLAP*D+VV+V QSSY
Sbjct: 172 KKER*NKNLAP*DLVVVVVQSSY 240
Score = 33.1 bits (66), Expect(4) = 1e-024
Identities = 18/27 (66%), Positives = 19/27 (70%)
Frame = +1 / -1
Query: 355 SAQLQ*LD*PTMTTMSQGARFAF*PSF 435
+AQ *LD* T TT SQGARF F SF
Sbjct: 254 AAQQ**LD*TTTTTRSQGARFLFYLSF 174
Score = 31.3 bits (62), Expect(4) = 3e-038
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = +3 / -1
Query: 459 YGYAPFNFXXXEHXXSAXLSEXCCXL 536
YGYA FNF E SA L+E C L
Sbjct: 143 YGYATFNF*LQELVFSAGLNEQCSFL 66
Score = 31.3 bits (62), Expect(4) = 1e-029
Identities = 15/28 (53%), Positives = 15/28 (53%)
Frame = +2 / -3
Query: 458 IWICTI*FXXXXAXXFSXXE*AXLLXXG 541
IWIC I*F A F E*A LL G
Sbjct: 144 IWICNI*FLIAGARFFGWLE*AMLLLEG 61
Score = 30.4 bits (60), Expect(4) = 9e-037
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -3 / +2
Query: 540 PXXSSXAHSXLLKXCAXXXKN*MVHIHM 457
P S AHS K A KN*M+HIH+
Sbjct: 62 PSRRSIAHSSQPKKRAPAIKN*MLHIHI 145
Score = 27.6 bits (54), Expect(4) = 1e-024
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1 / -2
Query: 457 HMDMHHLIFXXXSTXFQQX*VSXA 528
+MDM HLIF S+ F+ *+S A
Sbjct: 145 YMDMQHLIFDCRSSFFRLA*MSNA 74
Score = 25.8 bits (50), Expect(4) = 1e-028
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = -1 / +3
Query: 536 QXAAXLTQXC*XXVLXXXKIKWCISICYTVXVF 438
Q A L Q L KIK CISI + VF
Sbjct: 66 QEGALLIQASRKNELLQSKIKCCISIYIAIKVF 164
Score = 24.0 bits (46), Expect(4) = 1e-025
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -2 / +1
Query: 520 SLXXAEXXCSXXXKLNGAYPYAI 452
S AE S KLN AYPY +
Sbjct: 82 SFKPAEKTSSCNQKLNVAYPYIL 150
>gb|BI074628.1|BI074628 IP1_13_B09.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 515
Score = 129 bits (276), Expect(2) = 2e-037
Identities = 51/66 (77%), Positives = 60/66 (90%)
Frame = +3 / +1
Query: 216 RYPGETSREAIKRHQHFMALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLTNNDY 395
R+ GE+ RE+IKRH+HF+ALQLGLK GMKVLDVGCGIGGPL EIARFSSTS+TGL NN+Y
Sbjct: 265 RWNGESLRESIKRHEHFLALQLGLKPGMKVLDVGCGIGGPLREIARFSSTSVTGLNNNEY 444
Query: 396 HVSRGK 413
++RGK
Sbjct: 445 QITRGK 462
Score = 101 bits (215), Expect(2) = 9e-025
Identities = 43/70 (61%), Positives = 51/70 (72%)
Frame = -2 / -1
Query: 424 KMQTLPLETW*SLLVNPVIEVELNLAISIKGPPIPHPTSRTFIPFLSPNCSAIKCWCRLM 245
++ + PL W SLL NPV EVELNLAIS+ GPPIP PTS+TFIP P+C A KC RLM
Sbjct: 473 RLSSFPLVIWYSLLFNPVTEVELNLAISLSGPPIPQPTSKTFIPGFKPSCRARKCS*RLM 294
Query: 244 ASREVSPGYL 215
SR+ SP +L
Sbjct: 293 LSRKDSPFHL 264
Score = 48.7 bits (100), Expect(2) = 2e-037
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / +1
Query: 3 YDLVTGFYEYGWGDSFHFA 59
YDL T FYEYGWG+SFHFA
Sbjct: 205 YDLATSFYEYGWGESFHFA 261
Score = 34.1 bits (68), Expect(2) = 9e-025
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -2 / -1
Query: 58 AKWNESPHPYS*KPVTRS* 2
AKW +SP PYS*K V RS*
Sbjct: 260 AKWKDSPQPYS*KLVARS* 204
>gb|CX617235.1|CX617235 GABR1_32_C02.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_32_C02_A002 5', mRNA sequence
Length = 777
Score = 129 bits (276), Expect(2) = 3e-037
Identities = 51/66 (77%), Positives = 60/66 (90%)
Frame = +3 / +1
Query: 216 RYPGETSREAIKRHQHFMALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLTNNDY 395
R+ GE+ RE+IKRH+HF+ALQLGLK GMKVLDVGCGIGGPL EIARFSSTS+TGL NN+Y
Sbjct: 511 RWNGESLRESIKRHEHFLALQLGLKPGMKVLDVGCGIGGPLREIARFSSTSVTGLNNNEY 690
Query: 396 HVSRGK 413
++RGK
Sbjct: 691 QITRGK 708
Score = 107 bits (228), Expect(2) = 2e-026
Identities = 44/70 (62%), Positives = 52/70 (74%)
Frame = -2 / -2
Query: 424 KMQTLPLETW*SLLVNPVIEVELNLAISIKGPPIPHPTSRTFIPFLSPNCSAIKCWCRLM 245
++ + PL W SLL NPV EVELNLAIS+ GPPIP PTS+TFIP P+C A KC CRLM
Sbjct: 719 RLSSFPLVIWYSLLFNPVTEVELNLAISLSGPPIPQPTSKTFIPGFKPSCRARKCSCRLM 540
Query: 244 ASREVSPGYL 215
SR+ SP +L
Sbjct: 539 LSRKDSPFHL 510
Score = 48.7 bits (100), Expect(2) = 3e-037
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / +1
Query: 3 YDLVTGFYEYGWGDSFHFA 59
YDL T FYEYGWG+SFHFA
Sbjct: 451 YDLATSFYEYGWGESFHFA 507
Score = 34.1 bits (68), Expect(2) = 2e-026
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -2 / -2
Query: 58 AKWNESPHPYS*KPVTRS* 2
AKW +SP PYS*K V RS*
Sbjct: 506 AKWKDSPQPYS*KLVARS* 450
>gb|CX611601.1|CX611601 ANR1_25_D05.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_25_D05_A002 5', mRNA sequence
Length = 804
Score = 129 bits (276), Expect(2) = 3e-037
Identities = 51/66 (77%), Positives = 60/66 (90%)
Frame = +3 / +1
Query: 216 RYPGETSREAIKRHQHFMALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLTNNDY 395
R+ GE+ RE+IKRH+HF+ALQLGLK GMKVLDVGCGIGGPL EIARFSSTS+TGL NN+Y
Sbjct: 385 RWNGESLRESIKRHEHFLALQLGLKPGMKVLDVGCGIGGPLREIARFSSTSVTGLNNNEY 564
Query: 396 HVSRGK 413
++RGK
Sbjct: 565 QITRGK 582
Score = 101 bits (215), Expect(2) = 1e-024
Identities = 43/70 (61%), Positives = 51/70 (72%)
Frame = -2 / -2
Query: 424 KMQTLPLETW*SLLVNPVIEVELNLAISIKGPPIPHPTSRTFIPFLSPNCSAIKCWCRLM 245
++ + PL W SLL NPV EVELNLAIS+ GPPIP PTS+TFIP P+C A KC RLM
Sbjct: 593 RLSSFPLVIWYSLLFNPVTEVELNLAISLSGPPIPQPTSKTFIPGFKPSCRARKCS*RLM 414
Query: 244 ASREVSPGYL 215
SR+ SP +L
Sbjct: 413 LSRKDSPFHL 384
Score = 48.7 bits (100), Expect(2) = 3e-037
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / +1
Query: 3 YDLVTGFYEYGWGDSFHFA 59
YDL T FYEYGWG+SFHFA
Sbjct: 325 YDLATSFYEYGWGESFHFA 381
Score = 34.1 bits (68), Expect(2) = 1e-024
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -2 / -2
Query: 58 AKWNESPHPYS*KPVTRS* 2
AKW +SP PYS*K V RS*
Sbjct: 380 AKWKDSPQPYS*KLVARS* 324
>gb|CW047335.1|CW047335 104_285_10512671_114_30216 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10512671, DNA
sequence
Length = 664
Score = 90.0 bits (190), Expect(4) = 1e-032
Identities = 35/43 (81%), Positives = 39/43 (90%)
Frame = +3 / -2
Query: 177 FYSFSPILPCLYFRYPGETSREAIKRHQHFMALQLGLKKGMKV 305
F F+ +PCLYFRYPGETSREAIKRH+HF+ALQLGLKKGMKV
Sbjct: 486 FGKFTASVPCLYFRYPGETSREAIKRHEHFIALQLGLKKGMKV 358
Score = 89.5 bits (189), Expect(5) = 4e-036
Identities = 35/41 (85%), Positives = 37/41 (90%)
Frame = -2 / +2
Query: 304 TFIPFLSPNCSAIKCWCRLMASREVSPGYLKYKHGSMGLKL 182
TFIPFLSPNCSAIKC CRLMASREVSPGYLKYKHG+ + L
Sbjct: 359 TFIPFLSPNCSAIKCSCRLMASREVSPGYLKYKHGTEAVNL 481
Score = 78.5 bits (165), Expect(4) = 2e-028
Identities = 31/36 (86%), Positives = 34/36 (94%)
Frame = -1 / +1
Query: 305 NLHTLLEPQL*CHKMLVPLNGFTGSFTRISEIQAWE 198
NLH LLEPQL*C+KML+PLNGFTGS TRISEIQAW+
Sbjct: 358 NLHPLLEPQL*CNKMLMPLNGFTGSLTRISEIQAWD 465
Score = 75.8 bits (159), Expect(4) = 3e-029
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +1 / -3
Query: 199 SHACISDIRVKLPVKPLSGTSILWHYNWGSRRV*R 303
SHACISDIRV+LPVKPLSG SIL HYNWGSRR *R
Sbjct: 464 SHACISDIRVRLPVKPLSGMSILLHYNWGSRRG*R 360
Score = 69.8 bits (146), Expect(4) = 5e-024
Identities = 31/36 (86%), Positives = 32/36 (88%)
Frame = -3 / +3
Query: 303 PSYPS*APIVVP*NAGAA*WLHGKFHPDI*NTSMGV 196
PS PS*APIVV *NA AA*WLHGK HPDI*NTSMG+
Sbjct: 360 PSSPS*APIVVQ*NAHAA*WLHGKSHPDI*NTSMGL 467
Score = 69.3 bits (145), Expect(4) = 1e-023
Identities = 32/40 (80%), Positives = 35/40 (87%)
Frame = +2 / -1
Query: 185 LQSHTPMLVFQISG*NFP*SH*AAPAFYGTTIGAQEGYEG 304
+ S +PMLVFQISG*+FP*SH*AA AFY TTIGAQEG EG
Sbjct: 478 IYSFSPMLVFQISG*DFP*SH*AA*AFYCTTIGAQEGDEG 359
Score = 54.7 bits (113), Expect(4) = 1e-032
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = +2 / -3
Query: 302 GSGRGMWNWGTFNRNCQIQLNFNN 373
GSG GMWNWGTFNRNCQIQ +N
Sbjct: 80 GSGCGMWNWGTFNRNCQIQAMIHN 9
Score = 50.6 bits (104), Expect(5) = 4e-036
Identities = 18/22 (81%), Positives = 21/22 (95%)
Frame = -3 / +1
Query: 363 LS*IWQFLLKVPQFHIPRPEPS 298
++*IWQFLLKVPQFHIP PEP+
Sbjct: 19 IA*IWQFLLKVPQFHIPHPEPA 84
Score = 50.1 bits (103), Expect(4) = 2e-028
Identities = 20/26 (76%), Positives = 23/26 (88%)
Frame = -2 / +3
Query: 379 NPVIEVELNLAISIKGPPIPHPTSRT 302
N +++ LNLAISIKGPPIPHPTSRT
Sbjct: 3 NFIVDHCLNLAISIKGPPIPHPTSRT 80
Score = 48.7 bits (100), Expect(4) = 3e-029
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +3 / -1
Query: 285 LKKGMKVLDVGCGIGGPLIEIARF 356
LK ++VLDVGCGIGGPLIEIARF
Sbjct: 97 LKLLLQVLDVGCGIGGPLIEIARF 26
Score = 46.9 bits (96), Expect(4) = 5e-024
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = -1 / +2
Query: 356 ESGNFY*RSPNSTSHVQNL 300
ESGNFY*RSPNSTSH+QNL
Sbjct: 26 ESGNFY*RSPNSTSHIQNL 82
Score = 46.4 bits (95), Expect(4) = 1e-023
Identities = 18/19 (94%), Positives = 18/19 (94%)
Frame = +1 / -2
Query: 301 RFWTWDVELGDL**KLPDS 357
RFW WDVELGDL**KLPDS
Sbjct: 81 RFWMWDVELGDL**KLPDS 25
Score = 32.2 bits (64), Expect(4) = 3e-029
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +1 / -2
Query: 157 LDHSFGNFTASVP 195
LDHSFG FTASVP
Sbjct: 498 LDHSFGKFTASVP 460
Score = 31.3 bits (62), Expect(4) = 1e-032
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +2 / -3
Query: 50 PFCWRVSYICIP 85
PFCW+VSYI IP
Sbjct: 662 PFCWQVSYIYIP 627
Score = 30.9 bits (61), Expect(5) = 4e-036
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = -1 / +2
Query: 83 VCICS*PASKME 48
VCICS*PASKME
Sbjct: 629 VCICS*PASKME 664
Score = 29.5 bits (58), Expect(5) = 4e-036
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = -3 / +1
Query: 195 WD*SCKITKTVI*N 154
WD*SCK TKT+I*+
Sbjct: 460 WD*SCKFTKTMI*S 501
Score = 29.0 bits (57), Expect(4) = 3e-029
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +1 / -2
Query: 49 SILLAGQLHMHT 84
SILLAGQLH+HT
Sbjct: 663 SILLAGQLHIHT 628
Score = 28.1 bits (55), Expect(4) = 1e-023
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +3 / -1
Query: 48 FHFAGGSATYAY 83
FHFAG SATY Y
Sbjct: 664 FHFAGRSATYTY 629
Score = 27.6 bits (54), Expect(4) = 2e-028
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = -1 / +2
Query: 203 WEYGTEAVKLPKL*S 159
+++GTEAV LPKL*S
Sbjct: 452 YKHGTEAVNLPKL*S 496
Score = 26.7 bits (52), Expect(4) = 2e-028
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -2 / +3
Query: 82 YAYVADPPAKW 50
Y YVAD PAKW
Sbjct: 630 YVYVADLPAKW 662
Score = 26.7 bits (52), Expect(4) = 5e-024
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = -2 / +3
Query: 199 SMGLKL*NYQNCDL 158
SMGLKL* YQN DL
Sbjct: 456 SMGLKL*IYQNYDL 497
Score = 24.9 bits (48), Expect(5) = 4e-036
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = -1 / +1
Query: 155 TTRHLY*DTTDMLLLS 108
+TRHL *DTTD ++++
Sbjct: 499 STRHLN*DTTDAVIVN 546
Score = 24.4 bits (47), Expect(4) = 5e-024
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = -3 / +1
Query: 84 GMHM*LTRQQNG 49
GM+M*LT QQNG
Sbjct: 628 GMYM*LTCQQNG 663
Score = 22.6 bits (43), Expect(4) = 1e-023
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +2 / -3
Query: 158 *ITVLVILQLQSH 196
*I VLV LQLQSH
Sbjct: 497 *IIVLVNLQLQSH 459
Score = 21.7 bits (41), Expect(4) = 1e-032
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = +2 / -2
Query: 95 YYYLSTIT 118
YYY+STIT
Sbjct: 618 YYYISTIT 595
>gb|CW047336.1|CW047336 104_285_10512671_114_30218 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10512671, DNA
sequence
Length = 665
Score = 90.0 bits (190), Expect(4) = 4e-033
Identities = 35/43 (81%), Positives = 39/43 (90%)
Frame = +3 / -3
Query: 177 FYSFSPILPCLYFRYPGETSREAIKRHQHFMALQLGLKKGMKV 305
F F+ +PCLYFRYPGETSREAIKRH+HF+ALQLGLKKGMKV
Sbjct: 486 FGKFTASVPCLYFRYPGETSREAIKRHEHFIALQLGLKKGMKV 358
Score = 89.5 bits (189), Expect(5) = 4e-036
Identities = 35/41 (85%), Positives = 37/41 (90%)
Frame = -2 / +2
Query: 304 TFIPFLSPNCSAIKCWCRLMASREVSPGYLKYKHGSMGLKL 182
TFIPFLSPNCSAIKC CRLMASREVSPGYLKYKHG+ + L
Sbjct: 359 TFIPFLSPNCSAIKCSCRLMASREVSPGYLKYKHGTEAVNL 481
Score = 78.5 bits (165), Expect(4) = 2e-028
Identities = 31/36 (86%), Positives = 34/36 (94%)
Frame = -1 / +1
Query: 305 NLHTLLEPQL*CHKMLVPLNGFTGSFTRISEIQAWE 198
NLH LLEPQL*C+KML+PLNGFTGS TRISEIQAW+
Sbjct: 358 NLHPLLEPQL*CNKMLMPLNGFTGSLTRISEIQAWD 465
Score = 75.8 bits (159), Expect(4) = 3e-029
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +1 / -1
Query: 199 SHACISDIRVKLPVKPLSGTSILWHYNWGSRRV*R 303
SHACISDIRV+LPVKPLSG SIL HYNWGSRR *R
Sbjct: 464 SHACISDIRVRLPVKPLSGMSILLHYNWGSRRG*R 360
Score = 69.8 bits (146), Expect(4) = 5e-024
Identities = 31/36 (86%), Positives = 32/36 (88%)
Frame = -3 / +3
Query: 303 PSYPS*APIVVP*NAGAA*WLHGKFHPDI*NTSMGV 196
PS PS*APIVV *NA AA*WLHGK HPDI*NTSMG+
Sbjct: 360 PSSPS*APIVVQ*NAHAA*WLHGKSHPDI*NTSMGL 467
Score = 69.3 bits (145), Expect(4) = 1e-023
Identities = 32/40 (80%), Positives = 35/40 (87%)
Frame = +2 / -2
Query: 185 LQSHTPMLVFQISG*NFP*SH*AAPAFYGTTIGAQEGYEG 304
+ S +PMLVFQISG*+FP*SH*AA AFY TTIGAQEG EG
Sbjct: 478 IYSFSPMLVFQISG*DFP*SH*AA*AFYCTTIGAQEGDEG 359
Score = 54.7 bits (113), Expect(4) = 4e-033
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = +2 / -1
Query: 302 GSGRGMWNWGTFNRNCQIQLNFNN 373
GSG GMWNWGTFNRNCQIQ +N
Sbjct: 80 GSGCGMWNWGTFNRNCQIQAMIHN 9
Score = 50.6 bits (104), Expect(5) = 4e-036
Identities = 18/22 (81%), Positives = 21/22 (95%)
Frame = -3 / +1
Query: 363 LS*IWQFLLKVPQFHIPRPEPS 298
++*IWQFLLKVPQFHIP PEP+
Sbjct: 19 IA*IWQFLLKVPQFHIPHPEPA 84
Score = 50.1 bits (103), Expect(4) = 2e-028
Identities = 20/26 (76%), Positives = 23/26 (88%)
Frame = -2 / +3
Query: 379 NPVIEVELNLAISIKGPPIPHPTSRT 302
N +++ LNLAISIKGPPIPHPTSRT
Sbjct: 3 NFIVDHCLNLAISIKGPPIPHPTSRT 80
Score = 48.7 bits (100), Expect(4) = 3e-029
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +3 / -2
Query: 285 LKKGMKVLDVGCGIGGPLIEIARF 356
LK ++VLDVGCGIGGPLIEIARF
Sbjct: 97 LKLLLQVLDVGCGIGGPLIEIARF 26
Score = 46.9 bits (96), Expect(4) = 5e-024
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = -1 / +2
Query: 356 ESGNFY*RSPNSTSHVQNL 300
ESGNFY*RSPNSTSH+QNL
Sbjct: 26 ESGNFY*RSPNSTSHIQNL 82
Score = 46.4 bits (95), Expect(4) = 1e-023
Identities = 18/19 (94%), Positives = 18/19 (94%)
Frame = +1 / -3
Query: 301 RFWTWDVELGDL**KLPDS 357
RFW WDVELGDL**KLPDS
Sbjct: 81 RFWMWDVELGDL**KLPDS 25
Score = 32.2 bits (64), Expect(4) = 3e-029
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +1 / -3
Query: 157 LDHSFGNFTASVP 195
LDHSFG FTASVP
Sbjct: 498 LDHSFGKFTASVP 460
Score = 31.3 bits (62), Expect(4) = 4e-033
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +2 / -3
Query: 50 PFCWRVSYICIP 85
PFCW+VSYI IP
Sbjct: 663 PFCWQVSYIYIP 628
Score = 30.9 bits (61), Expect(5) = 4e-036
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = -1 / +3
Query: 83 VCICS*PASKME 48
VCICS*PASKME
Sbjct: 630 VCICS*PASKME 665
Score = 29.5 bits (58), Expect(5) = 4e-036
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = -3 / +1
Query: 195 WD*SCKITKTVI*N 154
WD*SCK TKT+I*+
Sbjct: 460 WD*SCKFTKTMI*S 501
Score = 29.0 bits (57), Expect(4) = 3e-029
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +1 / -2
Query: 49 SILLAGQLHMHT 84
SILLAGQLH+HT
Sbjct: 664 SILLAGQLHIHT 629
Score = 28.1 bits (55), Expect(4) = 1e-023
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +3 / -1
Query: 48 FHFAGGSATYAY 83
FHFAG SATY Y
Sbjct: 665 FHFAGRSATYTY 630
Score = 27.6 bits (54), Expect(4) = 2e-028
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = -1 / +2
Query: 203 WEYGTEAVKLPKL*S 159
+++GTEAV LPKL*S
Sbjct: 452 YKHGTEAVNLPKL*S 496
Score = 26.7 bits (52), Expect(4) = 2e-028
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -2 / +1
Query: 82 YAYVADPPAKW 50
Y YVAD PAKW
Sbjct: 631 YVYVADLPAKW 663
Score = 26.7 bits (52), Expect(4) = 5e-024
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = -2 / +3
Query: 199 SMGLKL*NYQNCDL 158
SMGLKL* YQN DL
Sbjct: 456 SMGLKL*IYQNYDL 497
Score = 24.9 bits (48), Expect(5) = 4e-036
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = -1 / +1
Query: 155 TTRHLY*DTTDMLLLS 108
+TRHL *DTTD ++++
Sbjct: 499 STRHLN*DTTDAVIVN 546
Score = 24.4 bits (47), Expect(4) = 5e-024
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = -3 / +2
Query: 84 GMHM*LTRQQNG 49
GM+M*LT QQNG
Sbjct: 629 GMYM*LTCQQNG 664
Score = 23.1 bits (44), Expect(4) = 4e-033
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +2 / -2
Query: 95 YYYLSTITAYLLYLSR 142
YYY+STIT + ++ R
Sbjct: 619 YYYISTITFFREHVRR 572
Score = 22.6 bits (43), Expect(4) = 1e-023
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +2 / -1
Query: 158 *ITVLVILQLQSH 196
*I VLV LQLQSH
Sbjct: 497 *IIVLVNLQLQSH 459
>gb|CF486612.1|CF486612 POL1_38_E10.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_38_E10_A002 5', mRNA sequence
Length = 738
Score = 127 bits (271), Expect(3) = 2e-033
Identities = 50/65 (76%), Positives = 59/65 (90%)
Frame = +3 / +1
Query: 216 RYPGETSREAIKRHQHFMALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLTNNDY 395
R+ GE+ RE+IKRH+HF+ALQLGLK GMKVLDVGCGIGGPL EIARFSSTS+TGL NN+Y
Sbjct: 544 RWNGESLRESIKRHEHFLALQLGLKPGMKVLDVGCGIGGPLREIARFSSTSVTGLNNNEY 723
Query: 396 HVSRG 410
++RG
Sbjct: 724 QITRG 738
Score = 105 bits (223), Expect(2) = 3e-022
Identities = 44/65 (67%), Positives = 49/65 (75%)
Frame = -2 / -2
Query: 409 PLETW*SLLVNPVIEVELNLAISIKGPPIPHPTSRTFIPFLSPNCSAIKCWCRLMASREV 230
PL W SLL NPV EVELNLAIS+ GPPIP PTS+TFIP P+C A KC CRLM SR+
Sbjct: 737 PLVIWYSLLFNPVTEVELNLAISLSGPPIPQPTSKTFIPGFKPSCRARKCSCRLMLSRKD 558
Query: 229 SPGYL 215
SP +L
Sbjct: 557 SPFHL 543
Score = 29.0 bits (57), Expect(3) = 2e-033
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +3 / +3
Query: 3 YDLVTGFYEYGWG 41
YDL T FYEYG G
Sbjct: 483 YDLATSFYEYGLG 521
Score = 27.2 bits (53), Expect(3) = 2e-033
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +3 / +1
Query: 33 GWGDSFHFA 59
GWG+SFHFA
Sbjct: 514 GWGESFHFA 540
Score = 22.6 bits (43), Expect(2) = 3e-022
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -2 / -3
Query: 40 PHPYS*KPVTRS* 2
P+PYS*K V RS*
Sbjct: 520 PNPYS*KLVARS* 482
>gb|CW144784.1|CW144784 104_537_11138124_148_34969_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11138124, DNA
sequence
Length = 647
Score = 90.0 bits (190), Expect(3) = 7e-029
Identities = 35/43 (81%), Positives = 39/43 (90%)
Frame = +3 / +1
Query: 177 FYSFSPILPCLYFRYPGETSREAIKRHQHFMALQLGLKKGMKV 305
F F+ +PCLYFRYPGETSREAIKRH+HF+ALQLGLKKGMKV
Sbjct: 154 FGKFTASVPCLYFRYPGETSREAIKRHEHFIALQLGLKKGMKV 282
Score = 89.5 bits (189), Expect(3) = 5e-028
Identities = 35/41 (85%), Positives = 37/41 (90%)
Frame = -2 / -1
Query: 304 TFIPFLSPNCSAIKCWCRLMASREVSPGYLKYKHGSMGLKL 182
TFIPFLSPNCSAIKC CRLMASREVSPGYLKYKHG+ + L
Sbjct: 281 TFIPFLSPNCSAIKCSCRLMASREVSPGYLKYKHGTEAVNL 159
Score = 78.5 bits (165), Expect(3) = 5e-026
Identities = 31/36 (86%), Positives = 34/36 (94%)
Frame = -1 / -3
Query: 305 NLHTLLEPQL*CHKMLVPLNGFTGSFTRISEIQAWE 198
NLH LLEPQL*C+KML+PLNGFTGS TRISEIQAW+
Sbjct: 282 NLHPLLEPQL*CNKMLMPLNGFTGSLTRISEIQAWD 175
Score = 75.8 bits (159), Expect(3) = 1e-025
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +1 / +2
Query: 199 SHACISDIRVKLPVKPLSGTSILWHYNWGSRRV*R 303
SHACISDIRV+LPVKPLSG SIL HYNWGSRR *R
Sbjct: 176 SHACISDIRVRLPVKPLSGMSILLHYNWGSRRG*R 280
Score = 69.8 bits (146), Expect(3) = 5e-022
Identities = 31/36 (86%), Positives = 32/36 (88%)
Frame = -3 / -2
Query: 303 PSYPS*APIVVP*NAGAA*WLHGKFHPDI*NTSMGV 196
PS PS*APIVV *NA AA*WLHGK HPDI*NTSMG+
Sbjct: 280 PSSPS*APIVVQ*NAHAA*WLHGKSHPDI*NTSMGL 173
Score = 54.7 bits (113), Expect(3) = 7e-029
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = +2 / +2
Query: 302 GSGRGMWNWGTFNRNCQIQLNFNN 373
GSG GMWNWGTFNRNCQIQ +N
Sbjct: 560 GSGCGMWNWGTFNRNCQIQAMIHN 631
Score = 50.6 bits (104), Expect(3) = 5e-028
Identities = 18/22 (81%), Positives = 21/22 (95%)
Frame = -3 / -3
Query: 363 LS*IWQFLLKVPQFHIPRPEPS 298
++*IWQFLLKVPQFHIP PEP+
Sbjct: 621 IA*IWQFLLKVPQFHIPHPEPA 556
Score = 50.1 bits (103), Expect(3) = 5e-026
Identities = 20/26 (76%), Positives = 23/26 (88%)
Frame = -2 / -2
Query: 379 NPVIEVELNLAISIKGPPIPHPTSRT 302
N +++ LNLAISIKGPPIPHPTSRT
Sbjct: 637 NFIVDHCLNLAISIKGPPIPHPTSRT 560
Score = 48.7 bits (100), Expect(3) = 1e-025
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +3 / +3
Query: 285 LKKGMKVLDVGCGIGGPLIEIARF 356
LK ++VLDVGCGIGGPLIEIARF
Sbjct: 543 LKLLLQVLDVGCGIGGPLIEIARF 614
Score = 46.9 bits (96), Expect(3) = 5e-022
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = -1 / -1
Query: 356 ESGNFY*RSPNSTSHVQNL 300
ESGNFY*RSPNSTSH+QNL
Sbjct: 614 ESGNFY*RSPNSTSHIQNL 558
Score = 32.2 bits (64), Expect(3) = 1e-025
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +1 / +1
Query: 157 LDHSFGNFTASVP 195
LDHSFG FTASVP
Sbjct: 142 LDHSFGKFTASVP 180
Score = 29.5 bits (58), Expect(3) = 5e-026
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = -3 / -3
Query: 195 WD*SCKITKTVI*N 154
WD*SCK TKT+I*+
Sbjct: 180 WD*SCKFTKTMI*S 139
Score = 27.6 bits (54), Expect(3) = 5e-022
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = -1 / -1
Query: 203 WEYGTEAVKLPKL*S 159
+++GTEAV LPKL*S
Sbjct: 188 YKHGTEAVNLPKL*S 144
Score = 24.9 bits (48), Expect(3) = 5e-028
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = -1 / -3
Query: 155 TTRHLY*DTTDMLLLS 108
+TRHL *DTTD ++++
Sbjct: 141 STRHLN*DTTDAVIVN 94
Score = 23.1 bits (44), Expect(3) = 7e-029
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +2 / +3
Query: 95 YYYLSTITAYLLYLSR 142
YYY+STIT + ++ R
Sbjct: 21 YYYISTITFFREHVRR 68
>gb|CW368958.1|CW368958 fsbb001f043c10k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f043c10, DNA
sequence
Length = 649
Score = 54.2 bits (112), Expect(6) = 3e-027
Identities = 19/24 (79%), Positives = 19/24 (79%)
Frame = +2 / -2
Query: 302 GSGRGMWNWGTFNRNCQIQLNFNN 373
GSG GMWNWGTFNRNCQIQ N
Sbjct: 216 GSGCGMWNWGTFNRNCQIQAMIRN 145
Score = 50.6 bits (104), Expect(5) = 8e-021
Identities = 18/22 (81%), Positives = 21/22 (95%)
Frame = -3 / +2
Query: 363 LS*IWQFLLKVPQFHIPRPEPS 298
++*IWQFLLKVPQFHIP PEP+
Sbjct: 155 IA*IWQFLLKVPQFHIPHPEPA 220
Score = 45.1 bits (92), Expect(5) = 8e-021
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = -2 / +3
Query: 304 TFIPFLSPNCSAIKCWCRL 248
TFIPFLSPNCSAIKC C L
Sbjct: 495 TFIPFLSPNCSAIKCSCPL 551
Score = 40.5 bits (82), Expect(6) = 3e-027
Identities = 15/17 (88%), Positives = 17/17 (100%)
Frame = +3 / -1
Query: 255 HQHFMALQLGLKKGMKV 305
H+HF+ALQLGLKKGMKV
Sbjct: 544 HEHFIALQLGLKKGMKV 494
Score = 34.5 bits (69), Expect(6) = 3e-027
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = +1 / -1
Query: 145 CRVVLDHSFGNFTASVP 195
CRV LDHS G FT SVP
Sbjct: 649 CRVGLDHSLGKFTGSVP 599
Score = 31.3 bits (62), Expect(6) = 3e-027
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3 / -1
Query: 186 FSPILPCLYFRYPG 227
F+ +PCLYFRYPG
Sbjct: 616 FTGSVPCLYFRYPG 575
Score = 29.5 bits (58), Expect(5) = 8e-021
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -1 / +3
Query: 203 WEYGTEAVKLPKL*SRTTR 147
+++GTE V LPKL*S TR
Sbjct: 591 YKHGTEPVNLPKL*SNPTR 647
Score = 27.2 bits (53), Expect(6) = 3e-027
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2 / -2
Query: 347 CQIQLNFNNWIDQQ*LPCLKGQ 412
C +QL+ +NWI+ Q*L +G+
Sbjct: 69 CLLQLSNDNWIELQ*LQISRGK 4
Score = 23.5 bits (45), Expect(5) = 8e-021
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -1 / +2
Query: 233 SFTRISEIQAWE 198
S RISEIQAW+
Sbjct: 569 SSPRISEIQAWD 604
Score = 23.5 bits (45), Expect(5) = 8e-021
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -3 / +2
Query: 408 PLRHGSHCWSIQLLKLS 358
PL SHC SIQL LS
Sbjct: 8 PLEIWSHCSSIQLSLLS 58
Score = 21.7 bits (41), Expect(6) = 3e-027
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1 / -1
Query: 232 LPVKPLSG 255
LPVKPLSG
Sbjct: 568 LPVKPLSG 545
>gb|CW386868.1|CW386868 fsbb001f070p13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f070p13, DNA
sequence
Length = 695
Score = 59.3 bits (123), Expect(3) = 3e-023
Identities = 23/32 (71%), Positives = 28/32 (87%)
Frame = +3 / +2
Query: 210 YFRYPGETSREAIKRHQHFMALQLGLKKGMKV 305
Y R+ GE+ RE+IKRH+HF+ALQLGLK GMKV
Sbjct: 341 YVRWNGESLRESIKRHEHFLALQLGLKPGMKV 436
Score = 48.7 bits (100), Expect(3) = 3e-023
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / +3
Query: 3 YDLVTGFYEYGWGDSFHFA 59
YDL T FYEYGWG+SFHFA
Sbjct: 120 YDLATSFYEYGWGESFHFA 176
Score = 40.9 bits (83), Expect(3) = 3e-023
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = +3 / +2
Query: 303 VLDVGCGIGGPLIEIARFSSTSI 371
VLDVGCGI GPL EIARF+ S+
Sbjct: 521 VLDVGCGIRGPLREIARFTFDSL 589
>gb|CW025326.1|CW025326 104_226_10488128_114_30494 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10488128, DNA
sequence
Length = 665
Score = 54.7 bits (113), Expect(4) = 6e-023
Identities = 20/26 (76%), Positives = 24/26 (92%)
Frame = +3 / -2
Query: 216 RYPGETSREAIKRHQHFMALQLGLKK 293
RYPG+T REA+KRHQHFMALQLG ++
Sbjct: 655 RYPGDTFREALKRHQHFMALQLGSRR 578
Score = 51.5 bits (106), Expect(3) = 1e-021
Identities = 20/25 (80%), Positives = 21/25 (84%)
Frame = -2 / +3
Query: 289 LSPNCSAIKCWCRLMASREVSPGYL 215
L PNCSAIKC CR ASR+VSPGYL
Sbjct: 582 LEPNCSAIKC*CRFNASRKVSPGYL 656
Score = 48.7 bits (100), Expect(3) = 1e-021
Identities = 18/20 (90%), Positives = 20/20 (100%)
Frame = -2 / +3
Query: 358 LNLAISIKGPPIPHPTSRTF 299
LNLAISIKGPPIPHPTS+T+
Sbjct: 240 LNLAISIKGPPIPHPTSKTY 299
Score = 48.3 bits (99), Expect(4) = 6e-023
Identities = 23/32 (71%), Positives = 24/32 (75%)
Frame = +3 / -2
Query: 273 LQLGLKKGMKVLDVGCGIGGPLIEIARFSSTS 368
L L LK + VLDVGCGIGGPLIEIARF S
Sbjct: 325 LGL*LKLLL*VLDVGCGIGGPLIEIARFRQRS 230
Score = 43.2 bits (88), Expect(3) = 1e-021
Identities = 19/38 (50%), Positives = 23/38 (60%)
Frame = -2 / +3
Query: 466 YPYAIQFXCSKKKAKMQTLPLETW*SLLVNPVIEVELN 353
Y F K+ K++TLPLE W*SL NPVI EL+
Sbjct: 27 YAIKFCFYSKKENGKIKTLPLEIW*SL*FNPVISAELH 140
Score = 39.6 bits (80), Expect(4) = 6e-023
Identities = 17/25 (68%), Positives = 18/25 (72%)
Frame = +3 / -2
Query: 357 SSTSITGLTNNDYHVSRGKVCILAF 431
SS ITGL NDY +SRGKV IL F
Sbjct: 136 SSALITGLNYNDYQISRGKVFILPF 62
Score = 21.7 bits (41), Expect(4) = 6e-023
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +2 / -1
Query: 446 KLYSIWICTI*F 481
KLYSIW T F
Sbjct: 41 KLYSIWYATFNF 6
>gb|CW391887.1|CW391887 fsbb001f078d24k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f078d24, DNA
sequence
Length = 725
Score = 51.5 bits (106), Expect(3) = 7e-022
Identities = 21/32 (65%), Positives = 26/32 (81%)
Frame = +3 / +3
Query: 210 YFRYPGETSREAIKRHQHFMALQLGLKKGMKV 305
Y R+ + RE+IKRH+HF+ALQLGLK GMKV
Sbjct: 276 YVRWNVLSLRESIKRHEHFLALQLGLKPGMKV 371
Score = 48.7 bits (100), Expect(3) = 7e-022
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / +3
Query: 3 YDLVTGFYEYGWGDSFHFA 59
YDL T FYEYGWG+SFHFA
Sbjct: 66 YDLATSFYEYGWGESFHFA 122
Score = 44.1 bits (90), Expect(3) = 7e-022
Identities = 18/20 (90%), Positives = 18/20 (90%)
Frame = +3 / +2
Query: 303 VLDVGCGIGGPLIEIARFSS 362
VLDVGCGIGGPL EIARF S
Sbjct: 458 VLDVGCGIGGPLREIARFRS 517
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 654,119,529
Number of Sequences: 832831
Number of extensions: 9074884
Number of successful extensions: 90140
Number of sequences better than 1.0e-020: 12
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 16750511820
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)