TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAZ4d09.yg.2.1
(542 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN126691.1|CN126691 RHOH1_18_D06.g1_A002 Acid- and alkal... 307 8e-083
gb|CX623274.1|CX623274 GABR1_68_E09.g1_A002 GA- or brassino... 307 8e-083
gb|CD219719.1|CD219719 CCC1_58_A06.g1_A007 Callus culture/c... 218 4e-056
gb|BG488194.1|BG488194 RHIZ2_60_F08.b1_A003 Rhizome2 (RHIZ2... 188 8e-047
gb|CD221400.1|CD221400 CCC1_54_H10.g1_A007 Callus culture/c... 182 3e-045
gb|CD428455.1|CD428455 ETH1_31_B03.g1_A002 Ethylene-treated... 182 3e-045
gb|CX613388.1|CX613388 GABR1_7_H05.g1_A002 GA- or brassinol... 182 3e-045
gb|CW215978.1|CW215978 104_648_11194865_148_37114_069 Sorgh... 154 9e-037
gb|CW232234.1|CW232234 104_681_11211552_148_37352_084 Sorgh... 154 9e-037
gb|CW488125.1|CW488125 fsbb001f254f15k0 Sorghum methylation... 154 9e-037
gb|BG052082.1|BG052082 RHIZ2_5_H05.b1_A003 Rhizome2 (RHIZ2)... 152 4e-036
gb|BG103284.1|BG103284 RHIZ2_18_E06.b1_A003 Rhizome2 (RHIZ2... 152 4e-036
gb|CW222636.1|CW222636 104_658_11202482_148_37179_011 Sorgh... 101 2e-032
gb|CW111937.1|CW111937 104_485_11104609_116_34537_005 Sorgh... 101 2e-032
gb|CW343292.1|CW343292 104_845_11487342_148_36187_023 Sorgh... 101 3e-027
gb|BE362203.1|BE362203 DG1_85_C03.b1_A002 Dark Grown 1 (DG1... 119 3e-026
gb|CN143494.1|CN143494 WOUND1_16_D04.g1_A002 Wounded leaves... 117 1e-025
gb|CX618974.1|CX618974 GABR1_42_F12.g1_A002 GA- or brassino... 115 5e-025
gb|CW039493.1|CW039493 104_272_10505533_115_30390 Sorghum m... 114 9e-025
gb|BE360355.1|BE360355 DG1_63_A09.b1_A002 Dark Grown 1 (DG1... 112 3e-024
gb|CW129823.1|CW129823 104_512_11114776_148_34775_064 Sorgh... 107 1e-022
gb|CW166461.1|CW166461 104_575_11153066_148_36766_011 Sorgh... 107 1e-022
gb|CW230260.1|CW230260 104_671_11207753_148_37265_065 Sorgh... 107 1e-022
gb|CW046344.1|CW046344 104_283_10510137_114_30137 Sorghum m... 92 1e-022
gb|CW386005.1|CW386005 fsbb001f069l05k0 Sorghum methylation... 92 1e-022
gb|CL172681.1|CL172681 104_375_10890322_148_31796_226 Sorgh... 79 2e-022
gb|CW166459.1|CW166459 104_575_11153065_148_36767_011 Sorgh... 104 1e-021
gb|CD206727.1|CD206727 HS1_24_H03.g1_A012 Heat-shocked seed... 102 5e-021
gb|CN149587.1|CN149587 WOUND1_63_E05.g1_A002 Wounded leaves... 102 5e-021
gb|CX608969.1|CX608969 ANR1_9_G12.g1_A002 Anaerobic roots S... 102 5e-021
gb|CD463977.1|CD463977 ETH1_47_F04.g1_A002 Ethylene-treated... 101 9e-021
gb|CX611785.1|CX611785 ANR1_26_E06.g1_A002 Anaerobic roots ... 101 9e-021
>gb|CN126691.1|CN126691 RHOH1_18_D06.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_18_D06_A002 5', mRNA sequence
Length = 851
Score = 307 bits (665), Expect = 8e-083
Identities = 125/172 (72%), Positives = 134/172 (77%)
Frame = -3 / -2
Query: 540 VXAXXXXDDXXXXKYHKQGXXXCXGCAXXXSLASSXXNHYPLHPEYDGIYKS*SWQYVG* 361
V A D KYHKQG G + S A S + Y LHPEYDGIYKS*SWQYVG*
Sbjct: 607 VLAPWAVDVGALEKYHKQGTPDGYGRSSNLSQAPSLLSLYSLHPEYDGIYKS*SWQYVG* 428
Query: 360 RRGEAC*CAIHSHVDEVLVKHGFE*SQSKDLDEHR*AHFRPCFPLKP*REWSHDNGCHYV 181
RGEAC*CAIHSH+DEVLV+HG E*SQS+DLDEH *A FRPCFPLKP EWSH+NGC YV
Sbjct: 427 CRGEAC*CAIHSHIDEVLVEHGLE*SQSQDLDEH**AQFRPCFPLKPEGEWSHNNGCGYV 248
Query: 180 PVDNKDIVAHSLPQGRDGDEEHSGEAELKKHHGHVRHHLPPCPGKFHAIRSS 25
PVDNKD+VAHSLPQGRDGDEEH GEA+LKK HGH+RHHLPPCPGKFH S
Sbjct: 247 PVDNKDVVAHSLPQGRDGDEEHPGEAQLKKDHGHIRHHLPPCPGKFHVTSRS 92
Score = 307 bits (664), Expect = 1e-082
Identities = 137/154 (88%), Positives = 139/154 (90%)
Frame = +1 / +2
Query: 40 MELAGTWRKVMPYMAMVFLQFGFAGMFLISVASLRQGMSHYVLVVYRNVVAAIVMAPFAL 219
MELAGTWRKVMPYMAMVFLQ GFAGMFLISVASLRQGMSHYVLVVYRNV AAIVMAPFAL
Sbjct: 107 MELAGTWRKVMPYMAMVFLQLGFAGMFLISVASLRQGMSHYVLVVYRNVAAAIVMAPFAL 286
Query: 220 WFERKTRPKMSLPVFIKILALGLLEPVLDQNFIYMGVNSTSASFSSALTNILPALTFVNA 399
WFERKTRPK+SL VFIKILALGLLEPVLDQNFIYMGVNSTSASF+SALTNILPALTFVNA
Sbjct: 287 WFERKTRPKLSLSVFIKILALGLLEPVLDQNFIYMGVNSTSASFASALTNILPALTFVNA 466
Query: 400 IILRMERIVIXXRRSQAXXXGTAXTVXXXLLMIL 501
IILRMERI RRS A GTA TV LLMIL
Sbjct: 467 IILRMERIETKERRSLAKIAGTAITVGGALLMIL 568
Score = 291 bits (629), Expect = 7e-078
Identities = 123/169 (72%), Positives = 133/169 (78%)
Frame = +3 / +1
Query: 36 SHGTCRDMEEGDALHGHGVSSVRLRRNVPHLRRVPAAGNEPLCPCCLPERSGSHCHGSIR 215
SHGTCRDMEEGDAL+GHG+SSV LRR+VPHLRRVPAAGNEPL PCCLPERS SHC+GSIR
Sbjct: 103 SHGTCRDMEEGDALYGHGLSSVGLRRDVPHLRRVPAAGNEPLRPCCLPERSRSHCYGSIR 282
Query: 216 AMV*EENKA*NEPTGVHQDPCFGITRTRA*PKLHLHGSE*HISKLLLCVNQHIASSNFCK 395
+V*EENKA* EP VHQDP FGITR RA PKLHL+GSE*HISKL L +NQHIASSNFCK
Sbjct: 283 PLV*EENKA*TEPISVHQDPGFGITRARARPKLHLYGSE*HISKLRLGINQHIASSNFCK 462
Query: 396 CHHTQDGEDSDXXATKPGXXXRHSXNSXXXLAYDTXXXPHHXXXXXQXR 542
CHHTQDGE+ D AT+PG + N LAYDT P Q R
Sbjct: 463 CHHTQDGENRD*GATEPG*DCWNGHNRRGCLAYDTFQGPQRQLPMEQAR 609
Score = 252 bits (545), Expect = 3e-066
Identities = 111/169 (65%), Positives = 116/169 (68%)
Frame = +2 / +3
Query: 35 IAWNLPGHGGR*CLTWPWCFFXXXXXXXXXXXXXXCGRE*ATMSLLSTGT*WQPLSWLHS 214
+ WNLPGHGGR*CL WPW FF CGRE*AT SLLSTGT* QPL WLHS
Sbjct: 102 VTWNLPGHGGR*CLIWPWSFFSWASPGCSSSPSRPCGRE*ATTSLLSTGT*PQPLLWLHS 281
Query: 215 RYGLRGKQGLK*AYRCSSRSLLWDYSNPCLTKTSSTWE*IAHQQASPLR*PTYCQL*LL* 394
GLRGKQGL *AY+CSSRS LWDYS+PC TKTSS WE*IAHQQASP *PTYCQL*LL*
Sbjct: 282 PSGLRGKQGLN*AYQCSSRSWLWDYSSPCSTKTSSIWE*IAHQQASPRH*PTYCQL*LL* 461
Query: 395 MPSYSGWRG**XXXDEARLXXXAQPXQXXXPCL*YFXXXXSSXXXXAXT 541
MPSYSGWR * D A L +P PCL*YF +S A T
Sbjct: 462 MPSYSGWRE*RLRSDGAWLRLLERP*PSGVPCL*YFSRAPTSTAHGAST 608
Score = 235 bits (507), Expect = 5e-061
Identities = 111/154 (72%), Positives = 113/154 (73%)
Frame = -1 / -3
Query: 500 SIISKXXXTVXAVPXXXAWXXXXXXXXXXXXSMMAFTKVRAGNMLVNAEEKLADVLFTPM 321
SIISK TV AVP A SMMAFTKVRAGNMLVNAE KLADVLFTP+
Sbjct: 567 SIISKAPPTVMAVPAILARLRRSLVSILSILSMMAFTKVRAGNMLVNAEAKLADVLFTPI 388
Query: 320 *MKFWSSTGSSNPKARILMNTGRLILGLVFLSNHSANGXXXXXXXXXXXXXXX*WLIPCR 141
*MKFWSSTGSSNPKARILMNT RL LGLVFLSN ANG *WLIPCR
Sbjct: 387 *MKFWSSTGSSNPKARILMNTDRLSLGLVFLSNQRANGAITMAAATFR*TTRT*WLIPCR 208
Query: 140 RDATEMRNIPAKPN*RNTMAM*GITFLHVPASSM 39
RDATEMRNIPAKPN*R TMA+*GITFLHVPASSM
Sbjct: 207 RDATEMRNIPAKPN*RKTMAI*GITFLHVPASSM 106
Score = 196 bits (422), Expect(2) = 3e-057
Identities = 97/134 (72%), Positives = 99/134 (73%)
Frame = -2 / -1
Query: 541 RXCXXXXX*XGXXKVS*ARXXXLXWLCLXX*PGFVAXXSLSSPS*V*WHLQKLELAICWL 362
R C G KVS*AR W *PG VA SL SPS*V*WHLQKLELAICWL
Sbjct: 608 RACSMGS*RWGP*KVS*ARHPRRLWPFQQS*PGSVAP*SLFSPS*V*WHLQKLELAICWL 429
Query: 361 TQRRSLLMCYSLPCR*SFGQARVRVIPKQGS**TPVGSF*ALFSSQTIARMEP*QWLPLR 182
RRSLLMCYSLP R*SFG+AR RVIPK GS**T +GS *ALFSSQT RMEP*QWL LR
Sbjct: 428 MPRRSLLMCYSLPYR*SFGRARARVIPKPGS**TLIGSV*ALFSSQTRGRMEP*QWLRLR 249
Query: 181 SGRQQGHSGSFPAA 140
SGRQQG SGSFPAA
Sbjct: 248 SGRQQGRSGSFPAA 207
Score = 46.9 bits (96), Expect(2) = 3e-057
Identities = 17/18 (94%), Positives = 17/18 (94%)
Frame = -2 / -1
Query: 88 PWPCKASPSSMSRQVPCD 35
PWP KASPSSMSRQVPCD
Sbjct: 155 PWPYKASPSSMSRQVPCD 102
>gb|CX623274.1|CX623274 GABR1_68_E09.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_68_E09_A002 5', mRNA sequence
Length = 610
Score = 307 bits (665), Expect = 8e-083
Identities = 125/172 (72%), Positives = 134/172 (77%)
Frame = -3 / -1
Query: 540 VXAXXXXDDXXXXKYHKQGXXXCXGCAXXXSLASSXXNHYPLHPEYDGIYKS*SWQYVG* 361
V A D KYHKQG G + S A S + Y LHPEYDGIYKS*SWQYVG*
Sbjct: 604 VLAPWAVDVGALEKYHKQGTPDGYGRSSNLSQAPSLLSLYSLHPEYDGIYKS*SWQYVG* 425
Query: 360 RRGEAC*CAIHSHVDEVLVKHGFE*SQSKDLDEHR*AHFRPCFPLKP*REWSHDNGCHYV 181
RGEAC*CAIHSH+DEVLV+HG E*SQS+DLDEH *A FRPCFPLKP EWSH+NGC YV
Sbjct: 424 CRGEAC*CAIHSHIDEVLVEHGLE*SQSQDLDEH**AQFRPCFPLKPEGEWSHNNGCGYV 245
Query: 180 PVDNKDIVAHSLPQGRDGDEEHSGEAELKKHHGHVRHHLPPCPGKFHAIRSS 25
PVDNKD+VAHSLPQGRDGDEEH GEA+LKK HGH+RHHLPPCPGKFH S
Sbjct: 244 PVDNKDVVAHSLPQGRDGDEEHPGEAQLKKDHGHIRHHLPPCPGKFHVTSRS 89
Score = 307 bits (664), Expect = 1e-082
Identities = 137/154 (88%), Positives = 139/154 (90%)
Frame = +1 / +2
Query: 40 MELAGTWRKVMPYMAMVFLQFGFAGMFLISVASLRQGMSHYVLVVYRNVVAAIVMAPFAL 219
MELAGTWRKVMPYMAMVFLQ GFAGMFLISVASLRQGMSHYVLVVYRNV AAIVMAPFAL
Sbjct: 104 MELAGTWRKVMPYMAMVFLQLGFAGMFLISVASLRQGMSHYVLVVYRNVAAAIVMAPFAL 283
Query: 220 WFERKTRPKMSLPVFIKILALGLLEPVLDQNFIYMGVNSTSASFSSALTNILPALTFVNA 399
WFERKTRPK+SL VFIKILALGLLEPVLDQNFIYMGVNSTSASF+SALTNILPALTFVNA
Sbjct: 284 WFERKTRPKLSLSVFIKILALGLLEPVLDQNFIYMGVNSTSASFASALTNILPALTFVNA 463
Query: 400 IILRMERIVIXXRRSQAXXXGTAXTVXXXLLMIL 501
IILRMERI RRS A GTA TV LLMIL
Sbjct: 464 IILRMERIETKERRSLAKIAGTAITVGGALLMIL 565
Score = 291 bits (629), Expect = 7e-078
Identities = 123/169 (72%), Positives = 133/169 (78%)
Frame = +3 / +1
Query: 36 SHGTCRDMEEGDALHGHGVSSVRLRRNVPHLRRVPAAGNEPLCPCCLPERSGSHCHGSIR 215
SHGTCRDMEEGDAL+GHG+SSV LRR+VPHLRRVPAAGNEPL PCCLPERS SHC+GSIR
Sbjct: 100 SHGTCRDMEEGDALYGHGLSSVGLRRDVPHLRRVPAAGNEPLRPCCLPERSRSHCYGSIR 279
Query: 216 AMV*EENKA*NEPTGVHQDPCFGITRTRA*PKLHLHGSE*HISKLLLCVNQHIASSNFCK 395
+V*EENKA* EP VHQDP FGITR RA PKLHL+GSE*HISKL L +NQHIASSNFCK
Sbjct: 280 PLV*EENKA*TEPISVHQDPGFGITRARARPKLHLYGSE*HISKLRLGINQHIASSNFCK 459
Query: 396 CHHTQDGEDSDXXATKPGXXXRHSXNSXXXLAYDTXXXPHHXXXXXQXR 542
CHHTQDGE+ D AT+PG + N LAYDT P Q R
Sbjct: 460 CHHTQDGENRD*GATEPG*DCWNGHNRRGCLAYDTFQGPQRQLPMEQAR 606
Score = 252 bits (545), Expect = 3e-066
Identities = 111/169 (65%), Positives = 116/169 (68%)
Frame = +2 / +3
Query: 35 IAWNLPGHGGR*CLTWPWCFFXXXXXXXXXXXXXXCGRE*ATMSLLSTGT*WQPLSWLHS 214
+ WNLPGHGGR*CL WPW FF CGRE*AT SLLSTGT* QPL WLHS
Sbjct: 99 VTWNLPGHGGR*CLIWPWSFFSWASPGCSSSPSRPCGRE*ATTSLLSTGT*PQPLLWLHS 278
Query: 215 RYGLRGKQGLK*AYRCSSRSLLWDYSNPCLTKTSSTWE*IAHQQASPLR*PTYCQL*LL* 394
GLRGKQGL *AY+CSSRS LWDYS+PC TKTSS WE*IAHQQASP *PTYCQL*LL*
Sbjct: 279 PSGLRGKQGLN*AYQCSSRSWLWDYSSPCSTKTSSIWE*IAHQQASPRH*PTYCQL*LL* 458
Query: 395 MPSYSGWRG**XXXDEARLXXXAQPXQXXXPCL*YFXXXXSSXXXXAXT 541
MPSYSGWR * D A L +P PCL*YF +S A T
Sbjct: 459 MPSYSGWRE*RLRSDGAWLRLLERP*PSGVPCL*YFSRAPTSTAHGAST 605
Score = 235 bits (507), Expect = 5e-061
Identities = 111/154 (72%), Positives = 113/154 (73%)
Frame = -1 / -2
Query: 500 SIISKXXXTVXAVPXXXAWXXXXXXXXXXXXSMMAFTKVRAGNMLVNAEEKLADVLFTPM 321
SIISK TV AVP A SMMAFTKVRAGNMLVNAE KLADVLFTP+
Sbjct: 564 SIISKAPPTVMAVPAILARLRRSLVSILSILSMMAFTKVRAGNMLVNAEAKLADVLFTPI 385
Query: 320 *MKFWSSTGSSNPKARILMNTGRLILGLVFLSNHSANGXXXXXXXXXXXXXXX*WLIPCR 141
*MKFWSSTGSSNPKARILMNT RL LGLVFLSN ANG *WLIPCR
Sbjct: 384 *MKFWSSTGSSNPKARILMNTDRLSLGLVFLSNQRANGAITMAAATFR*TTRT*WLIPCR 205
Query: 140 RDATEMRNIPAKPN*RNTMAM*GITFLHVPASSM 39
RDATEMRNIPAKPN*R TMA+*GITFLHVPASSM
Sbjct: 204 RDATEMRNIPAKPN*RKTMAI*GITFLHVPASSM 103
Score = 196 bits (422), Expect(2) = 3e-057
Identities = 97/134 (72%), Positives = 99/134 (73%)
Frame = -2 / -3
Query: 541 RXCXXXXX*XGXXKVS*ARXXXLXWLCLXX*PGFVAXXSLSSPS*V*WHLQKLELAICWL 362
R C G KVS*AR W *PG VA SL SPS*V*WHLQKLELAICWL
Sbjct: 605 RACSMGS*RWGP*KVS*ARHPRRLWPFQQS*PGSVAP*SLFSPS*V*WHLQKLELAICWL 426
Query: 361 TQRRSLLMCYSLPCR*SFGQARVRVIPKQGS**TPVGSF*ALFSSQTIARMEP*QWLPLR 182
RRSLLMCYSLP R*SFG+AR RVIPK GS**T +GS *ALFSSQT RMEP*QWL LR
Sbjct: 425 MPRRSLLMCYSLPYR*SFGRARARVIPKPGS**TLIGSV*ALFSSQTRGRMEP*QWLRLR 246
Query: 181 SGRQQGHSGSFPAA 140
SGRQQG SGSFPAA
Sbjct: 245 SGRQQGRSGSFPAA 204
Score = 46.9 bits (96), Expect(2) = 3e-057
Identities = 17/18 (94%), Positives = 17/18 (94%)
Frame = -2 / -3
Query: 88 PWPCKASPSSMSRQVPCD 35
PWP KASPSSMSRQVPCD
Sbjct: 152 PWPYKASPSSMSRQVPCD 99
>gb|CD219719.1|CD219719 CCC1_58_A06.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_58_A06_A007 5', mRNA sequence
Length = 654
Score = 218 bits (471), Expect = 4e-056
Identities = 89/151 (58%), Positives = 118/151 (78%)
Frame = +1 / +3
Query: 67 VMPYMAMVFLQFGFAGMFLISVASLRQGMSHYVLVVYRNVVAAIVMAPFALWFERKTRPK 246
V PY+AM+ LQ GFAGM++++VASL++GMSH+VLVV+RN+ A VMAPFALWFERK+RP+
Sbjct: 24 VKPYLAMILLQVGFAGMYIVAVASLKRGMSHFVLVVHRNLFATAVMAPFALWFERKSRPR 203
Query: 247 MSLPVFIKILALGLLEPVLDQNFIYMGVNSTSASFSSALTNILPALTFVNAIILRMERIV 426
M++ +F+KI+ L LLEPVLDQN +MG N TSA F+SAL NILPA+TFV A++LRME++
Sbjct: 204 MTIKIFLKIMGLTLLEPVLDQNLYFMGANLTSAGFASALINILPAVTFVMALVLRMEKVR 383
Query: 427 IXXRRSQAXXXGTAXTVXXXLLMILXXXXII 519
+ SQA GT TV +LMIL ++
Sbjct: 384 LRSVHSQAKIVGTVLTVAGAVLMILYHGPVV 476
>gb|BG488194.1|BG488194 RHIZ2_60_F08.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 531
Score = 188 bits (404), Expect = 8e-047
Identities = 75/119 (63%), Positives = 100/119 (84%)
Frame = +1 / +2
Query: 67 VMPYMAMVFLQFGFAGMFLISVASLRQGMSHYVLVVYRNVVAAIVMAPFALWFERKTRPK 246
V PY+AMV LQ GF+GM+++SVASL++GM+H+VLVVYRN+VA +VMAPFAL FER RPK
Sbjct: 170 VKPYLAMVLLQVGFSGMYIVSVASLKRGMNHFVLVVYRNLVATVVMAPFALVFERGVRPK 349
Query: 247 MSLPVFIKILALGLLEPVLDQNFIYMGVNSTSASFSSALTNILPALTFVNAIILRMERI 423
M+ +F+KI+ L +LEPVLDQN Y+G TSA+F SAL NILPA+TF+ A+++RME++
Sbjct: 350 MTPLIFLKIMGLAVLEPVLDQNMYYLGAKLTSATFGSALVNILPAITFLLALVMRMEKL 526
>gb|CD221400.1|CD221400 CCC1_54_H10.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_54_H10_A007 5', mRNA sequence
Length = 628
Score = 182 bits (393), Expect = 3e-045
Identities = 79/148 (53%), Positives = 102/148 (68%)
Frame = +1 / +1
Query: 58 WRKVMPYMAMVFLQFGFAGMFLISVASLRQGMSHYVLVVYRNVVAAIVMAPFALWFERKT 237
+ K PY+AM LQFG+AGM +I+ SL GMSHYVLVVYR+ A I +APFAL ERK
Sbjct: 166 FEKAKPYIAMTSLQFGYAGMNVITKVSLNHGMSHYVLVVYRHAFATISIAPFALILERKV 345
Query: 238 RPKMSLPVFIKILALGLLEPVLDQNFIYMGVNSTSASFSSALTNILPALTFVNAIILRME 417
RPKM+ VF++I L LL PV+DQNF Y G+ T +F+ A++NILPA+TFV A+I RME
Sbjct: 346 RPKMTWSVFLQIFVLALLGPVIDQNFYYAGLKFTGPTFACAMSNILPAMTFVMAVIFRME 525
Query: 418 RIVIXXRRSQAXXXGTAXTVXXXLLMIL 501
++ + R QA GT TV ++M L
Sbjct: 526 KVDLKKVRCQAKVAGTLVTVAGAMMMTL 609
>gb|CD428455.1|CD428455 ETH1_31_B03.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_31_B03_A002 5', mRNA sequence
Length = 604
Score = 182 bits (393), Expect = 3e-045
Identities = 79/148 (53%), Positives = 102/148 (68%)
Frame = +1 / +2
Query: 58 WRKVMPYMAMVFLQFGFAGMFLISVASLRQGMSHYVLVVYRNVVAAIVMAPFALWFERKT 237
+ K PY+AM LQFG+AGM +I+ SL GMSHYVLVVYR+ A I +APFAL ERK
Sbjct: 161 FEKAKPYIAMTSLQFGYAGMNVITKVSLNHGMSHYVLVVYRHAFATISIAPFALILERKV 340
Query: 238 RPKMSLPVFIKILALGLLEPVLDQNFIYMGVNSTSASFSSALTNILPALTFVNAIILRME 417
RPKM+ VF++I L LL PV+DQNF Y G+ T +F+ A++NILPA+TFV A+I RME
Sbjct: 341 RPKMTWSVFLQIFVLALLGPVIDQNFYYAGLKFTGPTFACAMSNILPAMTFVMAVIFRME 520
Query: 418 RIVIXXRRSQAXXXGTAXTVXXXLLMIL 501
++ + R QA GT TV ++M L
Sbjct: 521 KVDLKKVRCQAKVAGTLVTVAGAMMMTL 604
>gb|CX613388.1|CX613388 GABR1_7_H05.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_7_H05_A002 5', mRNA sequence
Length = 757
Score = 182 bits (393), Expect = 3e-045
Identities = 79/148 (53%), Positives = 102/148 (68%)
Frame = +1 / +2
Query: 58 WRKVMPYMAMVFLQFGFAGMFLISVASLRQGMSHYVLVVYRNVVAAIVMAPFALWFERKT 237
+ K PY+AM LQFG+AGM +I+ SL GMSHYVLVVYR+ A I +APFAL ERK
Sbjct: 155 FEKAKPYIAMTSLQFGYAGMNVITKVSLNHGMSHYVLVVYRHAFATISIAPFALILERKV 334
Query: 238 RPKMSLPVFIKILALGLLEPVLDQNFIYMGVNSTSASFSSALTNILPALTFVNAIILRME 417
RPKM+ VF++I L LL PV+DQNF Y G+ T +F+ A++NILPA+TFV A+I RME
Sbjct: 335 RPKMTWSVFLQIFVLALLGPVIDQNFYYAGLKFTGPTFACAMSNILPAMTFVMAVIFRME 514
Query: 418 RIVIXXRRSQAXXXGTAXTVXXXLLMIL 501
++ + R QA GT TV ++M L
Sbjct: 515 KVDLKKVRCQAKVAGTLVTVAGAMMMTL 598
>gb|CW215978.1|CW215978 104_648_11194865_148_37114_069 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11194865, DNA
sequence
Length = 680
Score = 154 bits (331), Expect = 9e-037
Identities = 56/69 (81%), Positives = 60/69 (86%)
Frame = -3 / -2
Query: 231 PLKP*REWSHDNGCHYVPVDNKDIVAHSLPQGRDGDEEHSGEAELKKHHGHVRHHLPPCP 52
PLKP EWSH+NGC YVPVDNKD+VAHSLPQGRDGDEEH GEA+LKK HGH+RHHLPPCP
Sbjct: 487 PLKPEGEWSHNNGCGYVPVDNKDVVAHSLPQGRDGDEEHPGEAQLKKDHGHIRHHLPPCP 308
Query: 51 GKFHAIRSS 25
GKFH S
Sbjct: 307 GKFHVTSRS 281
Score = 148 bits (318), Expect = 6e-035
Identities = 62/64 (96%), Positives = 62/64 (96%)
Frame = +1 / +2
Query: 40 MELAGTWRKVMPYMAMVFLQFGFAGMFLISVASLRQGMSHYVLVVYRNVVAAIVMAPFAL 219
MELAGTWRKVMPYMAMVFLQ GFAGMFLISVASLRQGMSHYVLVVYRNV AAIVMAPFAL
Sbjct: 296 MELAGTWRKVMPYMAMVFLQLGFAGMFLISVASLRQGMSHYVLVVYRNVAAAIVMAPFAL 475
Query: 220 WFER 231
WFER
Sbjct: 476 WFER 487
Score = 142 bits (304), Expect = 5e-033
Identities = 56/65 (86%), Positives = 61/65 (93%)
Frame = +3 / +1
Query: 36 SHGTCRDMEEGDALHGHGVSSVRLRRNVPHLRRVPAAGNEPLCPCCLPERSGSHCHGSIR 215
SHGTCRDMEEGDAL+GHG+SSV LRR+VPHLRRVPAAGNEPL PCCLPERS SHC+GSIR
Sbjct: 292 SHGTCRDMEEGDALYGHGLSSVGLRRDVPHLRRVPAAGNEPLRPCCLPERSRSHCYGSIR 471
Query: 216 AMV*E 230
+V*E
Sbjct: 472 PLV*E 486
Score = 105 bits (224), Expect = 5e-022
Identities = 43/66 (65%), Positives = 44/66 (66%)
Frame = +2 / +3
Query: 35 IAWNLPGHGGR*CLTWPWCFFXXXXXXXXXXXXXXCGRE*ATMSLLSTGT*WQPLSWLHS 214
+ WNLPGHGGR*CL WPW FF CGRE*AT SLLSTGT* QPL WLHS
Sbjct: 291 VTWNLPGHGGR*CLIWPWSFFSWASPGCSSSPSRPCGRE*ATTSLLSTGT*PQPLLWLHS 470
Query: 215 RYGLRG 232
GLRG
Sbjct: 471 PSGLRG 488
>gb|CW232234.1|CW232234 104_681_11211552_148_37352_084 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11211552, DNA
sequence
Length = 667
Score = 154 bits (331), Expect = 9e-037
Identities = 56/69 (81%), Positives = 60/69 (86%)
Frame = -3 / +3
Query: 231 PLKP*REWSHDNGCHYVPVDNKDIVAHSLPQGRDGDEEHSGEAELKKHHGHVRHHLPPCP 52
PLKP EWSH+NGC YVPVDNKD+VAHSLPQGRDGDEEH GEA+LKK HGH+RHHLPPCP
Sbjct: 309 PLKPEGEWSHNNGCGYVPVDNKDVVAHSLPQGRDGDEEHPGEAQLKKDHGHIRHHLPPCP 488
Query: 51 GKFHAIRSS 25
GKFH S
Sbjct: 489 GKFHVTSRS 515
Score = 148 bits (318), Expect = 6e-035
Identities = 62/64 (96%), Positives = 62/64 (96%)
Frame = +1 / -3
Query: 40 MELAGTWRKVMPYMAMVFLQFGFAGMFLISVASLRQGMSHYVLVVYRNVVAAIVMAPFAL 219
MELAGTWRKVMPYMAMVFLQ GFAGMFLISVASLRQGMSHYVLVVYRNV AAIVMAPFAL
Sbjct: 500 MELAGTWRKVMPYMAMVFLQLGFAGMFLISVASLRQGMSHYVLVVYRNVAAAIVMAPFAL 321
Query: 220 WFER 231
WFER
Sbjct: 320 WFER 309
Score = 142 bits (304), Expect = 5e-033
Identities = 56/65 (86%), Positives = 61/65 (93%)
Frame = +3 / -2
Query: 36 SHGTCRDMEEGDALHGHGVSSVRLRRNVPHLRRVPAAGNEPLCPCCLPERSGSHCHGSIR 215
SHGTCRDMEEGDAL+GHG+SSV LRR+VPHLRRVPAAGNEPL PCCLPERS SHC+GSIR
Sbjct: 504 SHGTCRDMEEGDALYGHGLSSVGLRRDVPHLRRVPAAGNEPLRPCCLPERSRSHCYGSIR 325
Query: 216 AMV*E 230
+V*E
Sbjct: 324 PLV*E 310
Score = 105 bits (224), Expect = 5e-022
Identities = 43/66 (65%), Positives = 44/66 (66%)
Frame = +2 / -1
Query: 35 IAWNLPGHGGR*CLTWPWCFFXXXXXXXXXXXXXXCGRE*ATMSLLSTGT*WQPLSWLHS 214
+ WNLPGHGGR*CL WPW FF CGRE*AT SLLSTGT* QPL WLHS
Sbjct: 505 VTWNLPGHGGR*CLIWPWSFFSWASPGCSSSPSRPCGRE*ATTSLLSTGT*PQPLLWLHS 326
Query: 215 RYGLRG 232
GLRG
Sbjct: 325 PSGLRG 308
>gb|CW488125.1|CW488125 fsbb001f254f15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f254f15, DNA
sequence
Length = 629
Score = 154 bits (331), Expect = 9e-037
Identities = 56/69 (81%), Positives = 60/69 (86%)
Frame = -3 / +3
Query: 231 PLKP*REWSHDNGCHYVPVDNKDIVAHSLPQGRDGDEEHSGEAELKKHHGHVRHHLPPCP 52
PLKP EWSH+NGC YVPVDNKD+VAHSLPQGRDGDEEH GEA+LKK HGH+RHHLPPCP
Sbjct: 69 PLKPEGEWSHNNGCGYVPVDNKDVVAHSLPQGRDGDEEHPGEAQLKKDHGHIRHHLPPCP 248
Query: 51 GKFHAIRSS 25
GKFH S
Sbjct: 249 GKFHVTSRS 275
Score = 148 bits (318), Expect = 6e-035
Identities = 62/64 (96%), Positives = 62/64 (96%)
Frame = +1 / -1
Query: 40 MELAGTWRKVMPYMAMVFLQFGFAGMFLISVASLRQGMSHYVLVVYRNVVAAIVMAPFAL 219
MELAGTWRKVMPYMAMVFLQ GFAGMFLISVASLRQGMSHYVLVVYRNV AAIVMAPFAL
Sbjct: 260 MELAGTWRKVMPYMAMVFLQLGFAGMFLISVASLRQGMSHYVLVVYRNVAAAIVMAPFAL 81
Query: 220 WFER 231
WFER
Sbjct: 80 WFER 69
Score = 142 bits (304), Expect = 5e-033
Identities = 56/65 (86%), Positives = 61/65 (93%)
Frame = +3 / -3
Query: 36 SHGTCRDMEEGDALHGHGVSSVRLRRNVPHLRRVPAAGNEPLCPCCLPERSGSHCHGSIR 215
SHGTCRDMEEGDAL+GHG+SSV LRR+VPHLRRVPAAGNEPL PCCLPERS SHC+GSIR
Sbjct: 264 SHGTCRDMEEGDALYGHGLSSVGLRRDVPHLRRVPAAGNEPLRPCCLPERSRSHCYGSIR 85
Query: 216 AMV*E 230
+V*E
Sbjct: 84 PLV*E 70
Score = 105 bits (224), Expect = 5e-022
Identities = 43/66 (65%), Positives = 44/66 (66%)
Frame = +2 / -2
Query: 35 IAWNLPGHGGR*CLTWPWCFFXXXXXXXXXXXXXXCGRE*ATMSLLSTGT*WQPLSWLHS 214
+ WNLPGHGGR*CL WPW FF CGRE*AT SLLSTGT* QPL WLHS
Sbjct: 265 VTWNLPGHGGR*CLIWPWSFFSWASPGCSSSPSRPCGRE*ATTSLLSTGT*PQPLLWLHS 86
Query: 215 RYGLRG 232
GLRG
Sbjct: 85 PSGLRG 68
>gb|BG052082.1|BG052082 RHIZ2_5_H05.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 433
Score = 152 bits (326), Expect = 4e-036
Identities = 71/86 (82%), Positives = 74/86 (86%)
Frame = +1 / +2
Query: 244 KMSLPVFIKILALGLLEPVLDQNFIYMGVNSTSASFSSALTNILPALTFVNAIILRMERI 423
K+S+ VFIKILALGLLEPVLDQNFIYMGVNSTSASF+SALTNILPALTFVNAIILRMERI
Sbjct: 11 KLSVSVFIKILALGLLEPVLDQNFIYMGVNSTSASFASALTNILPALTFVNAIILRMERI 190
Query: 424 VIXXRRSQAXXXGTAXTVXXXLLMIL 501
I RRS A GTA TV LLMIL
Sbjct: 191 EIKERRSLAKIAGTAITVGGALLMIL 268
Score = 144 bits (310), Expect = 7e-034
Identities = 65/99 (65%), Positives = 70/99 (70%)
Frame = -3 / -1
Query: 540 VXAXXXXDDXXXXKYHKQGXXXCXGCAXXXSLASSXXNHYPLHPEYDGIYKS*SWQYVG* 361
V A D KYHKQG G + S A S N Y LHPEYDGIY+S*SWQYVG*
Sbjct: 307 VLAPWEVDVGALEKYHKQGTPDGYGRSSNLSQAPSLLNLYSLHPEYDGIYES*SWQYVG* 128
Query: 360 RRGEAC*CAIHSHVDEVLVKHGFE*SQSKDLDEHR*AHF 244
RRGEAC*CAIHSH+DEVLV+HG E*SQS+DLDEH A F
Sbjct: 127 RRGEAC*CAIHSHIDEVLVEHGLE*SQSQDLDEH*YAQF 11
Score = 142 bits (304), Expect = 5e-033
Identities = 65/100 (65%), Positives = 69/100 (69%)
Frame = +2 / +3
Query: 242 LK*AYRCSSRSLLWDYSNPCLTKTSSTWE*IAHQQASPLR*PTYCQL*LL*MPSYSGWRG 421
L *AY+CSSRS LWDYS+PC TKTSS WE*IAHQQASP R*PTYCQL*L *MPSYSGWR
Sbjct: 9 LN*AYQCSSRSWLWDYSSPCSTKTSSIWE*IAHQQASPRR*PTYCQL*LS*MPSYSGWRE 188
Query: 422 **XXXDEARLXXXAQPXQXXXPCL*YFXXXXSSXXXXAXT 541
* D A L +P PCL*YF +S A T
Sbjct: 189 *RLRSDGAWLRLLERP*PSGVPCL*YFSRAPTSTSHGAST 308
Score = 134 bits (287), Expect = 1e-030
Identities = 62/102 (60%), Positives = 67/102 (65%)
Frame = +3 / +1
Query: 237 KA*NEPTGVHQDPCFGITRTRA*PKLHLHGSE*HISKLLLCVNQHIASSNFCKCHHTQDG 416
+ * E VHQDP FGITR RA PKLHL+GSE*HISKL L VNQHIASSNF KCHHTQDG
Sbjct: 4 RG*TERISVHQDPGFGITRARARPKLHLYGSE*HISKLRLGVNQHIASSNFRKCHHTQDG 183
Query: 417 EDSDXXATKPGXXXRHSXNSXXXLAYDTXXXPHHXXXXXQXR 542
E+ D AT+PG + N LAYDT P Q R
Sbjct: 184 ENRD*GATEPG*DCWNGHNRRGCLAYDTFQGPQRQLPMEQAR 309
Score = 127 bits (271), Expect = 2e-028
Identities = 65/98 (66%), Positives = 68/98 (69%)
Frame = -2 / -3
Query: 541 RXCXXXXX*XGXXKVS*ARXXXLXWLCLXX*PGFVAXXSLSSPS*V*WHLQKLELAICWL 362
R C G KVS*AR W *PG VA SL SPS*V*WHL+KLELAICWL
Sbjct: 308 RACSMGS*RWGP*KVS*ARHPRRLWPFQQS*PGSVAP*SLFSPS*V*WHLRKLELAICWL 129
Query: 361 TQRRSLLMCYSLPCR*SFGQARVRVIPKQGS**TPVGS 248
T RRSLLMCYSLP R*SFG+AR RVIPK GS**T + S
Sbjct: 128 TPRRSLLMCYSLPYR*SFGRARARVIPKPGS**TLIRS 15
Score = 125 bits (268), Expect = 4e-028
Identities = 61/86 (70%), Positives = 62/86 (72%)
Frame = -1 / -2
Query: 500 SIISKXXXTVXAVPXXXAWXXXXXXXXXXXXSMMAFTKVRAGNMLVNAEEKLADVLFTPM 321
SIISK TV AVP A SMMAFTKVRAGNMLVNAE KLADVLFTP+
Sbjct: 267 SIISKAPPTVMAVPAILARLRRSLISILSILSMMAFTKVRAGNMLVNAEAKLADVLFTPI 88
Query: 320 *MKFWSSTGSSNPKARILMNTGRLIL 243
*MKFWSSTGSSNPKARILMNT L L
Sbjct: 87 *MKFWSSTGSSNPKARILMNTDTLSL 10
>gb|BG103284.1|BG103284 RHIZ2_18_E06.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 500
Score = 152 bits (326), Expect = 4e-036
Identities = 71/86 (82%), Positives = 74/86 (86%)
Frame = +1 / +2
Query: 244 KMSLPVFIKILALGLLEPVLDQNFIYMGVNSTSASFSSALTNILPALTFVNAIILRMERI 423
K+S+ VFIKILALGLLEPVLDQNFIYMGVNSTSASF+SALTNILPALTFVNAIILRMERI
Sbjct: 11 KLSVSVFIKILALGLLEPVLDQNFIYMGVNSTSASFASALTNILPALTFVNAIILRMERI 190
Query: 424 VIXXRRSQAXXXGTAXTVXXXLLMIL 501
I RRS A GTA TV LLMIL
Sbjct: 191 EIKERRSLAKIAGTAITVGGALLMIL 268
Score = 144 bits (310), Expect = 7e-034
Identities = 65/99 (65%), Positives = 70/99 (70%)
Frame = -3 / -2
Query: 540 VXAXXXXDDXXXXKYHKQGXXXCXGCAXXXSLASSXXNHYPLHPEYDGIYKS*SWQYVG* 361
V A D KYHKQG G + S A S N Y LHPEYDGIY+S*SWQYVG*
Sbjct: 307 VLAPWEVDVGALEKYHKQGTPDGYGRSSNLSQAPSLLNLYSLHPEYDGIYES*SWQYVG* 128
Query: 360 RRGEAC*CAIHSHVDEVLVKHGFE*SQSKDLDEHR*AHF 244
RRGEAC*CAIHSH+DEVLV+HG E*SQS+DLDEH A F
Sbjct: 127 RRGEAC*CAIHSHIDEVLVEHGLE*SQSQDLDEH*YAQF 11
Score = 142 bits (304), Expect = 5e-033
Identities = 65/100 (65%), Positives = 69/100 (69%)
Frame = +2 / +3
Query: 242 LK*AYRCSSRSLLWDYSNPCLTKTSSTWE*IAHQQASPLR*PTYCQL*LL*MPSYSGWRG 421
L *AY+CSSRS LWDYS+PC TKTSS WE*IAHQQASP R*PTYCQL*L *MPSYSGWR
Sbjct: 9 LN*AYQCSSRSWLWDYSSPCSTKTSSIWE*IAHQQASPRR*PTYCQL*LS*MPSYSGWRE 188
Query: 422 **XXXDEARLXXXAQPXQXXXPCL*YFXXXXSSXXXXAXT 541
* D A L +P PCL*YF +S A T
Sbjct: 189 *RLRSDGAWLRLLERP*PSGVPCL*YFSRAPTSTSHGAST 308
Score = 134 bits (287), Expect = 1e-030
Identities = 62/102 (60%), Positives = 67/102 (65%)
Frame = +3 / +1
Query: 237 KA*NEPTGVHQDPCFGITRTRA*PKLHLHGSE*HISKLLLCVNQHIASSNFCKCHHTQDG 416
+ * E VHQDP FGITR RA PKLHL+GSE*HISKL L VNQHIASSNF KCHHTQDG
Sbjct: 4 RG*TERISVHQDPGFGITRARARPKLHLYGSE*HISKLRLGVNQHIASSNFRKCHHTQDG 183
Query: 417 EDSDXXATKPGXXXRHSXNSXXXLAYDTXXXPHHXXXXXQXR 542
E+ D AT+PG + N LAYDT P Q R
Sbjct: 184 ENRD*GATEPG*DCWNGHNRRGCLAYDTFQGPQRQLPMEQAR 309
Score = 127 bits (271), Expect = 2e-028
Identities = 65/98 (66%), Positives = 68/98 (69%)
Frame = -2 / -1
Query: 541 RXCXXXXX*XGXXKVS*ARXXXLXWLCLXX*PGFVAXXSLSSPS*V*WHLQKLELAICWL 362
R C G KVS*AR W *PG VA SL SPS*V*WHL+KLELAICWL
Sbjct: 308 RACSMGS*RWGP*KVS*ARHPRRLWPFQQS*PGSVAP*SLFSPS*V*WHLRKLELAICWL 129
Query: 361 TQRRSLLMCYSLPCR*SFGQARVRVIPKQGS**TPVGS 248
T RRSLLMCYSLP R*SFG+AR RVIPK GS**T + S
Sbjct: 128 TPRRSLLMCYSLPYR*SFGRARARVIPKPGS**TLIRS 15
Score = 125 bits (268), Expect = 4e-028
Identities = 61/86 (70%), Positives = 62/86 (72%)
Frame = -1 / -3
Query: 500 SIISKXXXTVXAVPXXXAWXXXXXXXXXXXXSMMAFTKVRAGNMLVNAEEKLADVLFTPM 321
SIISK TV AVP A SMMAFTKVRAGNMLVNAE KLADVLFTP+
Sbjct: 267 SIISKAPPTVMAVPAILARLRRSLISILSILSMMAFTKVRAGNMLVNAEAKLADVLFTPI 88
Query: 320 *MKFWSSTGSSNPKARILMNTGRLIL 243
*MKFWSSTGSSNPKARILMNT L L
Sbjct: 87 *MKFWSSTGSSNPKARILMNTDTLSL 10
>gb|CW222636.1|CW222636 104_658_11202482_148_37179_011 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11202482, DNA
sequence
Length = 731
Score = 101 bits (216), Expect(2) = 2e-032
Identities = 43/77 (55%), Positives = 57/77 (74%)
Frame = +1 / -1
Query: 61 RKVMPYMAMVFLQFGFAGMFLISVASLRQGMSHYVLVVYRNVVAAIVMAPFALWFERKTR 240
++ PY+AM+ LQFG+AGM +I+ SL GMSHYVLVVYR+ A + +APFAL ERK R
Sbjct: 605 QRCKPYVAMISLQFGYAGMNVITKVSLNHGMSHYVLVVYRHAFATLSIAPFALVLERKVR 426
Query: 241 PKMSLPVFIKILALGLL 291
P+M+ VF++I L LL
Sbjct: 425 PRMTPWVFLQIFVLALL 375
Score = 57.9 bits (120), Expect(2) = 2e-032
Identities = 21/39 (53%), Positives = 31/39 (79%)
Frame = +1 / -3
Query: 295 PVLDQNFIYMGVNSTSASFSSALTNILPALTFVNAIILR 411
PV+DQNF Y G+ TS +FS A++N+LPA+TF+ A++ R
Sbjct: 264 PVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFILAVLFR 148
>gb|CW111937.1|CW111937 104_485_11104609_116_34537_005 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11104609, DNA
sequence
Length = 642
Score = 101 bits (216), Expect(2) = 2e-032
Identities = 43/77 (55%), Positives = 57/77 (74%)
Frame = +1 / -3
Query: 61 RKVMPYMAMVFLQFGFAGMFLISVASLRQGMSHYVLVVYRNVVAAIVMAPFALWFERKTR 240
++ PY+AM+ LQFG+AGM +I+ SL GMSHYVLVVYR+ A + +APFAL ERK R
Sbjct: 514 QRCKPYVAMISLQFGYAGMNVITKVSLNHGMSHYVLVVYRHAFATLSIAPFALVLERKVR 335
Query: 241 PKMSLPVFIKILALGLL 291
P+M+ VF++I L LL
Sbjct: 334 PRMTPWVFLQIFVLALL 284
Score = 57.9 bits (120), Expect(2) = 2e-032
Identities = 21/39 (53%), Positives = 31/39 (79%)
Frame = +1 / -2
Query: 295 PVLDQNFIYMGVNSTSASFSSALTNILPALTFVNAIILR 411
PV+DQNF Y G+ TS +FS A++N+LPA+TF+ A++ R
Sbjct: 173 PVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFILAVLFR 57
>gb|CW343292.1|CW343292 104_845_11487342_148_36187_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11487342, DNA
sequence
Length = 538
Score = 101 bits (216), Expect(2) = 3e-027
Identities = 43/77 (55%), Positives = 57/77 (74%)
Frame = +1 / +2
Query: 61 RKVMPYMAMVFLQFGFAGMFLISVASLRQGMSHYVLVVYRNVVAAIVMAPFALWFERKTR 240
++ PY+AM+ LQFG+AGM +I+ SL GMSHYVLVVYR+ A + +APFAL ERK R
Sbjct: 104 QRCKPYVAMISLQFGYAGMNVITKVSLNHGMSHYVLVVYRHAFATLSIAPFALVLERKVR 283
Query: 241 PKMSLPVFIKILALGLL 291
P+M+ VF++I L LL
Sbjct: 284 PRMTPWVFLQIFVLALL 334
Score = 40.9 bits (83), Expect(2) = 3e-027
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +1 / +1
Query: 295 PVLDQNFIYMGVNSTSASFSSALTNILP 378
PV+DQNF Y G+ S +FS A++N+LP
Sbjct: 445 PVIDQNFYYAGLRFPSPTFSCAMSNMLP 528
>gb|BE362203.1|BE362203 DG1_85_C03.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 553
Score = 119 bits (255), Expect = 3e-026
Identities = 53/152 (34%), Positives = 88/152 (57%)
Frame = +1 / +2
Query: 46 LAGTWRKVMPYMAMVFLQFGFAGMFLISVASLRQGMSHYVLVVYRNVVAAIVMAPFALWF 225
+ G K ++ M+ LQFG+AG ++S +L G+S V VYRN++A ++ PFA +
Sbjct: 41 VCGMPEKAQLHVEMLALQFGYAGFHVVSRLALNMGISKLVFPVYRNIIALCLLVPFAYFL 220
Query: 226 ERKTRPKMSLPVFIKILALGLLEPVLDQNFIYMGVNSTSASFSSALTNILPALTFVNAII 405
E+K RP+++L I+ L L +Q F +G+++TS +F+SA+ N +PA+TF A
Sbjct: 221 EKKDRPQLTLNFVIQFFLLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAA 400
Query: 406 LRMERIVIXXRRSQAXXXGTAXTVXXXLLMIL 501
LR+E++ + R A GT V ++ L
Sbjct: 401 LRIEKVRLDRRDGVAKVAGTLACVAGASVITL 496
>gb|CN143494.1|CN143494 WOUND1_16_D04.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_16_D04_A002 5', mRNA sequence
Length = 738
Score = 117 bits (250), Expect = 1e-025
Identities = 49/146 (33%), Positives = 88/146 (60%)
Frame = +1 / +3
Query: 64 KVMPYMAMVFLQFGFAGMFLISVASLRQGMSHYVLVVYRNVVAAIVMAPFALWFERKTRP 243
K+ ++ ++ LQF AG ++S A+L G+S VL+VYRNV++ ++APFA + E+K RP
Sbjct: 132 KLKLFIGVLALQFLLAGFHIVSRAALNMGVSKIVLIVYRNVISLALLAPFAYFLEKKDRP 311
Query: 244 KMSLPVFIKILALGLLEPVLDQNFIYMGVNSTSASFSSALTNILPALTFVNAIILRMERI 423
++ + ++ L L +Q F +G+ S +++SA+ N +PA+TFV A +LR+E++
Sbjct: 312 PLTFSLLVEFFLLALCGITANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLRLEQV 491
Query: 424 VIXXRRSQAXXXGTAXTVXXXLLMIL 501
+ R A GT ++ ++ L
Sbjct: 492 DLSRRHGVAKVVGTVVSIGGATVITL 569
>gb|CX618974.1|CX618974 GABR1_42_F12.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_42_F12_A002 5', mRNA sequence
Length = 622
Score = 115 bits (246), Expect = 5e-025
Identities = 52/150 (34%), Positives = 85/150 (56%)
Frame = +1 / +1
Query: 52 GTWRKVMPYMAMVFLQFGFAGMFLISVASLRQGMSHYVLVVYRNVVAAIVMAPFALWFER 231
G W + P++ MV Q + M+ I+ A QG++ YV + YR+++ A+++ PFA + E+
Sbjct: 103 GLWVRYAPHVLMVLAQLCYTLMYFITEAGFNQGLNPYVYITYRHLLVAVLIWPFAYYQEK 282
Query: 232 KTRPKMSLPVFIKILALGLLEPVLDQNFIYMGVNSTSASFSSALTNILPALTFVNAIILR 411
RPKM+L +F++I L LL L N + + TS +F +++ N + ++TFV AIILR
Sbjct: 283 GLRPKMTLMLFMEIFVLSLLGVSLTLNMYFASLKYTSPTFVTSVVNTIASMTFVIAIILR 462
Query: 412 MERIVIXXRRSQAXXXGTAXTVXXXLLMIL 501
ME + + R A GT + M L
Sbjct: 463 MEIVDVKSLRGLAKIAGTVVSFAGVTTMTL 552
>gb|CW039493.1|CW039493 104_272_10505533_115_30390 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10505533, DNA
sequence
Length = 698
Score = 114 bits (244), Expect = 9e-025
Identities = 50/130 (38%), Positives = 80/130 (61%)
Frame = +1 / -2
Query: 76 YMAMVFLQFGFAGMFLISVASLRQGMSHYVLVVYRNVVAAIVMAPFALWFERKTRPKMSL 255
++AM+ LQFG+AG ++S +L G+S V VYRN++A ++APFA + E+K RP M+
Sbjct: 397 HVAMLALQFGYAGFHVVSRLALNMGVSKLVFPVYRNLIALCLLAPFAYFLEKKDRPAMTP 218
Query: 256 PVFIKILALGLLEPVLDQNFIYMGVNSTSASFSSALTNILPALTFVNAIILRMERIVIXX 435
++ L L +Q F +G+++TS +F+SA+ N +PA+TF A L +ER+ +
Sbjct: 217 AFLLQFFLLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAALGIERVRLRR 38
Query: 436 RRSQAXXXGT 465
R A GT
Sbjct: 37 RDGLAKVAGT 8
>gb|BE360355.1|BE360355 DG1_63_A09.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 517
Score = 112 bits (240), Expect = 3e-024
Identities = 48/124 (38%), Positives = 78/124 (62%)
Frame = +1 / +3
Query: 46 LAGTWRKVMPYMAMVFLQFGFAGMFLISVASLRQGMSHYVLVVYRNVVAAIVMAPFALWF 225
+ G K ++AM+ LQFG+AG ++S +L G+S V VYRN++A ++ PFA +
Sbjct: 144 VCGMPEKAQLHVAMLALQFGYAGFHVVSRLALNMGISKLVFPVYRNIIALCLLVPFAYFL 323
Query: 226 ERKTRPKMSLPVFIKILALGLLEPVLDQNFIYMGVNSTSASFSSALTNILPALTFVNAII 405
E+K RP+++L I+ L L +Q F +G+++TS +F+SA+ N +PA+TF A
Sbjct: 324 EKKDRPQLTLNFVIQFFLLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAA 503
Query: 406 LRME 417
LR+E
Sbjct: 504 LRIE 515
>gb|CW129823.1|CW129823 104_512_11114776_148_34775_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11114776, DNA
sequence
Length = 687
Score = 107 bits (228), Expect = 1e-022
Identities = 42/66 (63%), Positives = 53/66 (80%)
Frame = +1 / -1
Query: 34 DRMELAGTWRKVMPYMAMVFLQFGFAGMFLISVASLRQGMSHYVLVVYRNVVAAIVMAPF 213
DRM + V PY+AM+ LQ GFAGM++++VASL++GMSH+VLVVYRN+ A VMAPF
Sbjct: 669 DRMGVGKALNDVKPYLAMILLQVGFAGMYIVAVASLKRGMSHFVLVVYRNLFATAVMAPF 490
Query: 214 ALWFER 231
ALWFER
Sbjct: 489 ALWFER 472
>gb|CW166461.1|CW166461 104_575_11153066_148_36766_011 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11153066, DNA
sequence
Length = 674
Score = 107 bits (228), Expect = 1e-022
Identities = 42/66 (63%), Positives = 53/66 (80%)
Frame = +1 / +3
Query: 34 DRMELAGTWRKVMPYMAMVFLQFGFAGMFLISVASLRQGMSHYVLVVYRNVVAAIVMAPF 213
DRM + V PY+AM+ LQ GFAGM++++VASL++GMSH+VLVVYRN+ A VMAPF
Sbjct: 405 DRMGVGKALNDVKPYLAMILLQVGFAGMYIVAVASLKRGMSHFVLVVYRNLFATAVMAPF 584
Query: 214 ALWFER 231
ALWFER
Sbjct: 585 ALWFER 602
>gb|CW230260.1|CW230260 104_671_11207753_148_37265_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11207753, DNA
sequence
Length = 693
Score = 107 bits (228), Expect = 1e-022
Identities = 42/66 (63%), Positives = 53/66 (80%)
Frame = +1 / -2
Query: 34 DRMELAGTWRKVMPYMAMVFLQFGFAGMFLISVASLRQGMSHYVLVVYRNVVAAIVMAPF 213
DRM + V PY+AM+ LQ GFAGM++++VASL++GMSH+VLVVYRN+ A VMAPF
Sbjct: 629 DRMGVGKALNDVKPYLAMILLQVGFAGMYIVAVASLKRGMSHFVLVVYRNLFATAVMAPF 450
Query: 214 ALWFER 231
ALWFER
Sbjct: 449 ALWFER 432
>gb|CW046344.1|CW046344 104_283_10510137_114_30137 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10510137, DNA
sequence
Length = 683
Score = 91.8 bits (194), Expect(2) = 1e-022
Identities = 40/75 (53%), Positives = 51/75 (68%)
Frame = +1 / +2
Query: 295 PVLDQNFIYMGVNSTSASFSSALTNILPALTFVNAIILRMERIVIXXRRSQAXXXGTAXT 474
PVLDQN +MG N TSA F+SAL NILPA+TFV A++LRME++ + SQA GT T
Sbjct: 329 PVLDQNLYFMGANLTSAGFASALINILPAVTFVMALVLRMEKVRLRSVHSQAKIVGTVLT 508
Query: 475 VXXXLLMILXXXXII 519
V +LMIL ++
Sbjct: 509 VAGAVLMILYHGPVV 553
Score = 35.0 bits (70), Expect(2) = 1e-022
Identities = 13/24 (54%), Positives = 20/24 (83%)
Frame = +1 / +1
Query: 229 RKTRPKMSLPVFIKILALGLLEPV 300
RK+RP+M++ +F+KI+ L LLE V
Sbjct: 148 RKSRPRMTIKIFLKIMGLTLLEYV 219
>gb|CW386005.1|CW386005 fsbb001f069l05k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f069l05, DNA
sequence
Length = 643
Score = 91.8 bits (194), Expect(2) = 1e-022
Identities = 40/75 (53%), Positives = 51/75 (68%)
Frame = +1 / +2
Query: 295 PVLDQNFIYMGVNSTSASFSSALTNILPALTFVNAIILRMERIVIXXRRSQAXXXGTAXT 474
PVLDQN +MG N TSA F+SAL NILPA+TFV A++LRME++ + SQA GT T
Sbjct: 305 PVLDQNLYFMGANLTSAGFASALINILPAVTFVMALVLRMEKVRLRSVHSQAKIVGTVLT 484
Query: 475 VXXXLLMILXXXXII 519
V +LMIL ++
Sbjct: 485 VAGAVLMILYHGPVV 529
Score = 35.0 bits (70), Expect(2) = 1e-022
Identities = 13/24 (54%), Positives = 20/24 (83%)
Frame = +1 / +1
Query: 229 RKTRPKMSLPVFIKILALGLLEPV 300
RK+RP+M++ +F+KI+ L LLE V
Sbjct: 124 RKSRPRMTIKIFLKIMGLTLLEYV 195
>gb|CL172681.1|CL172681 104_375_10890322_148_31796_226 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10890322, DNA
sequence
Length = 648
Score = 79.0 bits (166), Expect(2) = 2e-022
Identities = 33/67 (49%), Positives = 45/67 (67%)
Frame = +1 / -3
Query: 295 PVLDQNFIYMGVNSTSASFSSALTNILPALTFVNAIILRMERIVIXXRRSQAXXXGTAXT 474
PV+DQNF Y G+ T +F+ A++NILPA+TFV A+I RME++ + R QA GT T
Sbjct: 202 PVIDQNFYYAGLKFTGPTFACAMSNILPAMTFVMAVIFRMEKLQMKKVRCQAKVLGTMVT 23
Query: 475 VXXXLLM 495
V +LM
Sbjct: 22 VAGAMLM 2
Score = 48.7 bits (100), Expect(2) = 2e-022
Identities = 22/38 (57%), Positives = 26/38 (68%)
Frame = +1 / -2
Query: 148 GMSHYVLVVYRNVVAAIVMAPFALWFERKTRPKMSLPV 261
GMSHYVLVVYR+ A + +APFAL ER + S PV
Sbjct: 641 GMSHYVLVVYRHAFATLSIAPFALVLERYHTLQFSPPV 528
>gb|CW166459.1|CW166459 104_575_11153065_148_36767_011 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11153065, DNA
sequence
Length = 663
Score = 104 bits (221), Expect = 1e-021
Identities = 41/66 (62%), Positives = 52/66 (78%)
Frame = +1 / +3
Query: 34 DRMELAGTWRKVMPYMAMVFLQFGFAGMFLISVASLRQGMSHYVLVVYRNVVAAIVMAPF 213
DRM + V PY+AM+ LQ GFAGM++++VASL++GMSH+VLVVYRN+ A VMAPF
Sbjct: 405 DRMGVGKALNDVKPYLAMILLQVGFAGMYIVAVASLKRGMSHFVLVVYRNLFATAVMAPF 584
Query: 214 ALWFER 231
ALW ER
Sbjct: 585 ALWVER 602
>gb|CD206727.1|CD206727 HS1_24_H03.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_24_H03_A012 5', mRNA sequence
Length = 647
Score = 102 bits (217), Expect = 5e-021
Identities = 45/142 (31%), Positives = 74/142 (52%)
Frame = +1 / +1
Query: 76 YMAMVFLQFGFAGMFLISVASLRQGMSHYVLVVYRNVVAAIVMAPFALWFERKTRPKMSL 255
Y + +Q + GM+++S A+ GMS YV + YR A ++ P A+ ER+ P MS
Sbjct: 151 YGVAIIIQLIYTGMYVVSKAAFNHGMSTYVFIFYRQAAATALLLPLAIVLERRNAPPMSF 330
Query: 256 PVFIKILALGLLEPVLDQNFIYMGVNSTSASFSSALTNILPALTFVNAIILRMERIVIXX 435
+F+K+ LL L N + + TSA+ +SA +N +P +TF A++LR+E + +
Sbjct: 331 RLFLKLFFYALLGNTLSMNLYNISLKYTSATVASATSNSVPVVTFFLAVLLRLEVVRLRS 510
Query: 436 RRSQAXXXGTAXTVXXXLLMIL 501
A G A + L + L
Sbjct: 511 PSGMAKAAGVALCLAGVLTIAL 576
>gb|CN149587.1|CN149587 WOUND1_63_E05.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_63_E05_A002 5', mRNA sequence
Length = 856
Score = 102 bits (217), Expect = 5e-021
Identities = 45/142 (31%), Positives = 74/142 (52%)
Frame = +1 / +1
Query: 76 YMAMVFLQFGFAGMFLISVASLRQGMSHYVLVVYRNVVAAIVMAPFALWFERKTRPKMSL 255
Y + +Q + GM+++S A+ GMS YV + YR A ++ P A+ ER+ P MS
Sbjct: 142 YGVAIIIQLIYTGMYVVSKAAFNHGMSTYVFIFYRQAAATALLLPLAIVLERRNAPPMSF 321
Query: 256 PVFIKILALGLLEPVLDQNFIYMGVNSTSASFSSALTNILPALTFVNAIILRMERIVIXX 435
+F+K+ LL L N + + TSA+ +SA +N +P +TF A++LR+E + +
Sbjct: 322 RLFLKLFFYALLGNTLSMNLYNISLKYTSATVASATSNSVPVVTFFLAVLLRLEVVRLRS 501
Query: 436 RRSQAXXXGTAXTVXXXLLMIL 501
A G A + L + L
Sbjct: 502 PSGMAKAAGVALCLAGVLTIAL 567
>gb|CX608969.1|CX608969 ANR1_9_G12.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_9_G12_A002 5', mRNA sequence
Length = 699
Score = 102 bits (217), Expect = 5e-021
Identities = 45/142 (31%), Positives = 74/142 (52%)
Frame = +1 / +2
Query: 76 YMAMVFLQFGFAGMFLISVASLRQGMSHYVLVVYRNVVAAIVMAPFALWFERKTRPKMSL 255
Y + +Q + GM+++S A+ GMS YV + YR A ++ P A+ ER+ P MS
Sbjct: 74 YGVAIIIQLIYTGMYVVSKAAFNHGMSTYVFIFYRQAAATALLLPLAIVLERRNAPPMSF 253
Query: 256 PVFIKILALGLLEPVLDQNFIYMGVNSTSASFSSALTNILPALTFVNAIILRMERIVIXX 435
+F+K+ LL L N + + TSA+ +SA +N +P +TF A++LR+E + +
Sbjct: 254 RLFLKLFFYALLGNTLSMNLYNISLKYTSATVASATSNSVPVVTFFLAVLLRLEVVRLRS 433
Query: 436 RRSQAXXXGTAXTVXXXLLMIL 501
A G A + L + L
Sbjct: 434 PSGMAKAAGVALCLAGVLTIAL 499
>gb|CD463977.1|CD463977 ETH1_47_F04.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_47_F04_A002 5', mRNA sequence
Length = 592
Score = 101 bits (215), Expect = 9e-021
Identities = 49/150 (32%), Positives = 79/150 (52%)
Frame = +1 / +1
Query: 52 GTWRKVMPYMAMVFLQFGFAGMFLISVASLRQGMSHYVLVVYRNVVAAIVMAPFALWFER 231
G KV A++ L+ AG ++S A+L G+S +VYRN A +V+AP A + E+
Sbjct: 115 GAMAKVKLVAAVLVLEMLIAGFHVVSRAALDMGVSKMAFLVYRNGSALLVIAPVAYFLEK 294
Query: 232 KTRPKMSLPVFIKILALGLLEPVLDQNFIYMGVNSTSASFSSALTNILPALTFVNAIILR 411
K RP ++L + I L + Q +G+ S ++ S + N +PA+TFV A +LR
Sbjct: 295 KDRPPLTLRLMIDFFMLAAVGVTFTQGLYILGLYYLSPTYVSVIQNSVPAITFVMAAVLR 474
Query: 412 MERIVIXXRRSQAXXXGTAXTVXXXLLMIL 501
+E++ I R A GT T+ ++ L
Sbjct: 475 IEQVNIRSRHGLAKIAGTVITIAGATIITL 564
>gb|CX611785.1|CX611785 ANR1_26_E06.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_26_E06_A002 5', mRNA sequence
Length = 794
Score = 101 bits (215), Expect = 9e-021
Identities = 49/150 (32%), Positives = 79/150 (52%)
Frame = +1 / +1
Query: 52 GTWRKVMPYMAMVFLQFGFAGMFLISVASLRQGMSHYVLVVYRNVVAAIVMAPFALWFER 231
G KV A++ L+ AG ++S A+L G+S +VYRN A +V+AP A + E+
Sbjct: 109 GAMAKVKLVAAVLVLEMLIAGFHVVSRAALDMGVSKMAFLVYRNGSALLVIAPVAYFLEK 288
Query: 232 KTRPKMSLPVFIKILALGLLEPVLDQNFIYMGVNSTSASFSSALTNILPALTFVNAIILR 411
K RP ++L + I L + Q +G+ S ++ S + N +PA+TFV A +LR
Sbjct: 289 KDRPPLTLRLMIDFFMLAAVGVTFTQGLYILGLYYLSPTYVSVIQNSVPAITFVMAAVLR 468
Query: 412 MERIVIXXRRSQAXXXGTAXTVXXXLLMIL 501
+E++ I R A GT T+ ++ L
Sbjct: 469 IEQVNIRSRHGLAKIAGTVITIAGATIITL 558
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 629,277,056
Number of Sequences: 832831
Number of extensions: 8897280
Number of successful extensions: 114972
Number of sequences better than 1.0e-020: 33
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 15195107151
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)