TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QAS4f06.yg.3.1
         (768 letters)

Database: Sorghum_nucl_with_EST.fasta 
           832,831 sequences; 491,359,669 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CW485609.1|CW485609  fsbb001f248h04k0 Sorghum methylation...   100   2e-043

>gb|CW485609.1|CW485609 fsbb001f248h04k0 Sorghum methylation filtered library (LibID: 104)
           Sorghum bicolor genomic clone fsbb001f248h04, DNA
           sequence
          Length = 728

 Score =  100 bits (214), Expect(2) = 2e-042
 Identities = 41/59 (69%), Positives = 46/59 (77%)
 Frame = +3 / +1

                                                                      
Query: 588 LFFTCC*SGVWLIVYGRFQCVCHVCSAILMIVASMWCACDCSQSIVPLCFAVIEVLLGL 764
           +F   C*SGV  IVY  FQCVCHVCSAI +I+ASMWC C+CSQSIVP C AV +VLL L
Sbjct: 133 IFLIFC*SGV*FIVYCHFQCVCHVCSAIWVILASMWCDCECSQSIVPFCLAVNKVLLVL 309




 Score = 99.1 bits (210), Expect(2) = 2e-043
 Identities = 41/58 (70%), Positives = 48/58 (82%)
 Frame = -3 / -1

                                                                     
Query: 763 RPSNTSITAKQRGTIDWLQSQAHHMLATIIKIAEQTWHTH*KRPYTMSQTPD*QHVKK 590
           R SNT +TA+Q GTIDWL SQ+HHMLA I +IAEQT HTH*K  YTM+QTPD*Q ++K
Sbjct: 308 RTSNTLLTARQNGTIDWLHSQSHHMLAKITQIAEQT*HTH*K*QYTMNQTPD*QKIRK 135




 Score = 98.7 bits (209), Expect(2) = 2e-043
 Identities = 32/38 (84%), Positives = 33/38 (86%)
 Frame = -3 / -2

                                                 
Query: 583 LLHRTSRAGGLWGWGGEWRHLESGNGRDCCWNRSWNGW 470
           L  + SR GGLWGWGGEWRHLESGNG DCCWNRSWNGW
Sbjct: 130 LTRQISRVGGLWGWGGEWRHLESGNGWDCCWNRSWNGW 17




 Score = 98.2 bits (208), Expect(2) = 6e-034
 Identities = 44/60 (73%), Positives = 48/60 (80%)
 Frame = -1 / -2

                                                                       
Query: 768 HKDQVILQ*QQNKEVQ*TGCNHKHTTC*PLSSK*QNKHGTHTENDHIR*AKLLTNSM*RK 589
           HK+QVIL *QQ+K VQ*TGC H HTTC*P S K*Q+KH  HTEND+IR* KLLTN  * K
Sbjct: 313 HKEQVILY*QQDKMVQ*TGCIHNHTTC*PRSPK*QSKHDIHTENDNIR*IKLLTNRK*EK 134




 Score = 97.3 bits (206), Expect(2) = 5e-041
 Identities = 43/59 (72%), Positives = 45/59 (76%)
 Frame = +2 / +3

                                                                      
Query: 590 FLYMLLVRSLAHRIWSFSVCVPCLFCYFDDSG*HVVCL*LQPVYCTSLFCCY*SITWSL 766
           F Y LLVRSL HRI SFSVC+ CL CY  D G*HVV L*+QPVYCT L CC *SIT SL
Sbjct: 135 FSYFLLVRSLIHRILSFSVCMSCLLCYLGDLG*HVV*L*MQPVYCTILSCC**SITCSL 311




 Score = 93.2 bits (197), Expect(2) = 1e-026
 Identities = 42/58 (72%), Positives = 44/58 (75%)
 Frame = -2 / -3

                                                                     
Query: 764 KTK*YFNNSKTKRYNRLAAITSTPHASHYHQNSRTNMAHTLKTTIYDEPNS*LTACKE 591
           K K*YF NSKTK YNRLAA T TPHAS  H NSR NM +TLK TIYDE NS*LT  K+
Sbjct: 309 KNK*YFINSKTKWYNRLAAFTITPHASQDHPNSRANMTYTLKMTIYDESNS*LTENKK 136




 Score = 93.2 bits (197), Expect(2) = 2e-042
 Identities = 33/39 (84%), Positives = 35/39 (89%)
 Frame = +3 / +3

                                                  
Query: 456 FPLPCHPFQLRFQQQSLPFPDSRCLHSPPHPHKPPALEV 572
           + L CHPFQLRFQQQS PFPDSRCLHSPPHPHKPP LE+
Sbjct: 3   YRLLCHPFQLRFQQQSQPFPDSRCLHSPPHPHKPPTLEI 119




 Score = 92.3 bits (195), Expect(2) = 5e-041
 Identities = 35/40 (87%), Positives = 36/40 (90%)
 Frame = +1 / +1

                                                   
Query: 454 DSHYLAIHSNYDSNNNPYHSRTPGASIHRPIPTNHQPLKF 573
           D+ Y AIHSNYDSNNNP HSRTPGAS HRPIPTNHQPLKF
Sbjct: 1   DTVYCAIHSNYDSNNNPNHSRTPGASTHRPIPTNHQPLKF 120




 Score = 67.5 bits (141), Expect(2) = 6e-034
 Identities = 27/38 (71%), Positives = 30/38 (78%)
 Frame = -2 / -1

                                                 
Query: 575 SNFKGWWFVGMGR*MEAPGVREW*GXXXXXXXEWMAR* 462
           +NFKGWWFVGMGR*+EAPGVREW G       EWMA+*
Sbjct: 122 TNFKGWWFVGMGR*VEAPGVREWLGLLLES*LEWMAQ* 9




 Score = 48.3 bits (99), Expect(2) = 1e-026
 Identities = 17/20 (85%), Positives = 19/20 (95%)
 Frame = -1 / -3

                               
Query: 573 ELQGLVVCGDGAVNGGTWSP 514
           + QGLVVCGDGAV+GGTWSP
Sbjct: 120 KFQGLVVCGDGAVSGGTWSP 61



  Database: Sorghum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:54 PM
  Number of letters in database: 491,359,669
  Number of sequences in database:  832,831
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 1,112,816,468
Number of Sequences: 832831
Number of extensions: 21684437
Number of successful extensions: 258352
Number of sequences better than 1.0e-020: 1
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 23881550082
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)