TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAR1e04.yg.2.1
(405 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW229880.1|CW229880 104_671_11207551_148_37265_026 Sorgh... 228 4e-059
gb|CW246410.1|CW246410 104_707_11221331_116_35084_044 Sorgh... 228 4e-059
gb|CX608565.1|CX608565 ANR1_39_H01.b1_A002 Anaerobic roots ... 228 4e-059
gb|CX615427.1|CX615427 GABR1_20_C07.b1_A002 GA- or brassino... 228 4e-059
gb|CX615412.1|CX615412 GABR1_20_B03.b1_A002 GA- or brassino... 225 3e-058
gb|CF431128.1|CF431128 NIT1_6_G10.b1_A002 Nitrogen-deficien... 213 1e-054
gb|CW467144.1|CW467144 fsbb001f218l09f0 Sorghum methylation... 201 4e-051
gb|CW222901.1|CW222901 104_658_11202621_116_37181_087 Sorgh... 199 2e-050
gb|CW321938.1|CW321938 104_815_11475822_116_35944_023 Sorgh... 199 2e-050
gb|CF071060.1|CF071060 FE1_15_G11.b1_A002 Iron-deficient se... 194 4e-049
gb|CW246412.1|CW246412 104_707_11221331_148_37606_044 Sorgh... 176 1e-043
gb|CW246411.1|CW246411 104_707_11221331_148_35088_044 Sorgh... 174 7e-043
gb|CW090817.1|CW090817 104_436_10949489_114_32604_065 Sorgh... 168 4e-041
gb|CW260843.1|CW260843 104_727_11229185_116_35195_067 Sorgh... 168 4e-041
gb|CW268542.1|CW268542 104_739_11401361_148_35310_073 Sorgh... 168 4e-041
gb|CW296695.1|CW296695 104_778_11461650_116_35629_069 Sorgh... 161 5e-039
gb|CW148317.1|CW148317 104_542_11140356_148_35007_034 Sorgh... 127 6e-039
gb|CL178579.1|CL178579 104_386_10894676_148_31911_356 Sorgh... 153 1e-036
gb|BE360607.1|BE360607 DG1_64_C02.g1_A002 Dark Grown 1 (DG1... 153 1e-036
gb|CF433776.1|CF433776 NIT1_30_H07.b1_A002 Nitrogen-deficie... 146 1e-034
gb|CF488930.1|CF488930 POL1_53_C11.b1_A002 Pollen Sorghum b... 146 1e-034
gb|CN130229.1|CN130229 RHOH1_40_C10.b1_A002 Acid- and alkal... 146 1e-034
gb|CX610048.1|CX610048 ANR1_16_G06.b1_A002 Anaerobic roots ... 146 1e-034
gb|CW222902.1|CW222902 104_658_11202621_148_37182_087 Sorgh... 144 9e-034
gb|CB927210.1|CB927210 ABA1_14_D11.b1_A012 Abscisic acid-tr... 142 2e-033
gb|CW135608.1|CW135608 104_520_11117939_148_34834_044 Sorgh... 111 2e-032
gb|BF586409.1|BF586409 FM1_28_D10.g1_A003 Floral-Induced Me... 138 3e-032
gb|BZ781433.1|BZ781433 ii29b10.g1 WGS-SbicolorF (DH5a methy... 81 8e-031
gb|CW272516.1|CW272516 104_744_11403454_116_36228_083 Sorgh... 125 3e-030
gb|CW410053.1|CW410053 fsbb001f104k04k0 Sorghum methylation... 103 4e-030
gb|CW388623.1|CW388623 fsbb001f073h10k0 Sorghum methylation... 101 7e-030
gb|CF433802.1|CF433802 NIT1_30_E10.b1_A002 Nitrogen-deficie... 97 1e-029
gb|CD423127.1|CD423127 SA1_27_D09.b1_A002 Salicylic acid-tr... 129 2e-029
gb|CX609311.1|CX609311 ANR1_12_A01.b1_A002 Anaerobic roots ... 129 2e-029
gb|CW090115.1|CW090115 104_435_10949096_116_32613_018 Sorgh... 104 7e-029
gb|CW090114.1|CW090114 104_435_10949096_114_32612_018 Sorgh... 104 7e-029
gb|CW260844.1|CW260844 104_727_11229185_148_35199_067 Sorgh... 126 2e-028
gb|CW184226.1|CW184226 104_600_11165041_116_36681_007 Sorgh... 95 9e-028
gb|CW274119.1|CW274119 104_746_11404259_116_35364_034 Sorgh... 123 1e-027
gb|CW476669.1|CW476669 fsbb001f233k04f0 Sorghum methylation... 122 3e-027
gb|CX607180.1|CX607180 ANR1_7_D07.b1_A002 Anaerobic roots S... 91 3e-027
gb|BG357578.1|BG357578 OV2_31_F04.g1_A002 Ovary 2 (OV2) Sor... 121 5e-027
gb|CW329817.1|CW329817 104_826_11480043_148_35996_008 Sorgh... 120 9e-027
gb|CW124814.1|CW124814 104_504_11111989_148_34703_051 Sorgh... 119 2e-026
gb|CW403686.1|CW403686 fsbb001f095i11f0 Sorghum methylation... 119 2e-026
gb|CD427782.1|CD427782 ETH1_34_A07.b1_A002 Ethylene-treated... 119 2e-026
gb|CF430958.1|CF430958 NIT1_4_D02.b1_A002 Nitrogen-deficien... 118 3e-026
gb|CW135157.1|CW135157 104_519_11117696_148_34827_022 Sorgh... 99 4e-026
gb|CW221998.1|CW221998 104_657_11202146_148_37449_009 Sorgh... 82 2e-024
gb|CF429359.1|CF429359 PH1_21_G06.b1_A002 Phosphorous-defic... 72 2e-023
gb|CW340016.1|CW340016 104_840_11485579_148_36143_066 Sorgh... 105 2e-022
gb|CD231406.1|CD231406 SS1_16_D04.b1_A012 Salt-stressed see... 105 2e-022
gb|CW501750.1|CW501750 fsbb001f297l21f0 Sorghum methylation... 105 5e-022
gb|CW044142.1|CW044142 104_280_10508785_114_30262 Sorghum m... 104 6e-022
gb|CW253365.1|CW253365 104_717_11225045_148_35106_031 Sorgh... 104 6e-022
gb|CW464493.1|CW464493 fsbb001f213m05k0 Sorghum methylation... 104 6e-022
gb|AW671797.1|AW671797 LG1_351_B05.g1_A002 Light Grown 1 (L... 104 6e-022
gb|CF427061.1|CF427061 PH1_3_H06.b1_A002 Phosphorous-defici... 104 6e-022
gb|CX606134.1|CX606134 ANR1_1_G08.b1_A002 Anaerobic roots S... 104 6e-022
gb|CX607023.1|CX607023 ANR1_6_F05.b1_A002 Anaerobic roots S... 104 6e-022
gb|CX608555.1|CX608555 ANR1_39_G03.b1_A002 Anaerobic roots ... 104 6e-022
gb|CX611873.1|CX611873 ANR1_27_E10.b1_A002 Anaerobic roots ... 104 6e-022
gb|CX619183.1|CX619183 GABR1_44_A10.b1_A002 GA- or brassino... 104 6e-022
gb|CX621095.1|CX621095 GABR1_56_A09.b1_A002 GA- or brassino... 104 6e-022
gb|CW135156.1|CW135156 104_519_11117696_116_34831_022 Sorgh... 84 9e-022
gb|CX617875.1|CX617875 GABR1_36_G09.b1_A002 GA- or brassino... 102 3e-021
gb|CW388622.1|CW388622 fsbb001f073h10f0 Sorghum methylation... 101 4e-021
gb|CL194588.1|CL194588 104_419_10941741_114_32294_093 Sorgh... 101 6e-021
gb|CW391540.1|CW391540 fsbb001f077l15f0 Sorghum methylation... 100 8e-021
gb|CX612734.1|CX612734 GABR1_4_D12.b1_A002 GA- or brassinol... 100 8e-021
>gb|CW229880.1|CW229880 104_671_11207551_148_37265_026 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11207551, DNA
sequence
Length = 661
Score = 228 bits (492), Expect = 4e-059
Identities = 89/102 (87%), Positives = 92/102 (90%)
Frame = +1 / -3
Query: 1 NHPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGX 180
NHPIHLHGYDFYILAEGFGNFDA DTA FNMDDPPMRNTVGVPVNGWAVIRFVADNPG
Sbjct: 449 NHPIHLHGYDFYILAEGFGNFDAATDTAKFNMDDPPMRNTVGVPVNGWAVIRFVADNPGV 270
Query: 181 XLMHCHLDVHITWGLAMAFLVEDGVGEMQSLEAXXXDXXIC* 306
LMHCHLDVHITWGLAMAFLVEDGVGE++SLEA D +C*
Sbjct: 269 WLMHCHLDVHITWGLAMAFLVEDGVGELESLEAPPADLPVC* 144
Score = 188 bits (405), Expect = 4e-047
Identities = 78/100 (78%), Positives = 81/100 (81%)
Frame = -2 / +1
Query: 302 QMXXSXXXASSDCISPTPSSTRNAMARPQVMCTSRWQCMSXXPGLSATKRMTAQPLTGTP 123
Q S AS D SPTPSSTRNAMARPQVMCTS+WQC+S PGLSAT RMTA P TGTP
Sbjct: 148 QTGKSAGGASRDSSSPTPSSTRNAMARPQVMCTSKWQCISHTPGLSATNRMTAHPFTGTP 327
Query: 122 TVFLMGGSSMLKLAVSAXASKLPKPSARM*KS*PWRWMGW 3
TVFL+GGSSML AVS ASKLP PSARM*KS*PWRWMGW
Sbjct: 328 TVFLIGGSSMLNFAVSVAASKLPNPSARM*KS*PWRWMGW 447
Score = 112 bits (240), Expect = 2e-024
Identities = 46/64 (71%), Positives = 50/64 (78%)
Frame = -1 / +3
Query: 303 ADXXVXXXRLQ*LHLPDAVLHQERHGETPGDVHVQVAVHEXXPGIIRHEADDRPAVDRHA 124
AD V RLQ L LP+AVLHQERHGE PGDVH+Q+AVH+ P IIRHE DDRP V RHA
Sbjct: 147 ADRQVCRRRLQRLQLPNAVLHQERHGEAPGDVHIQMAVHQPHPRIIRHEPDDRPPVHRHA 326
Query: 123 HRVP 112
HRVP
Sbjct: 327 HRVP 338
>gb|CW246410.1|CW246410 104_707_11221331_116_35084_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221331, DNA
sequence
Length = 688
Score = 228 bits (492), Expect = 4e-059
Identities = 89/102 (87%), Positives = 92/102 (90%)
Frame = +1 / -1
Query: 1 NHPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGX 180
NHPIHLHGYDFYILAEGFGNFDA DTA FNMDDPPMRNTVGVPVNGWAVIRFVADNPG
Sbjct: 451 NHPIHLHGYDFYILAEGFGNFDAATDTAKFNMDDPPMRNTVGVPVNGWAVIRFVADNPGV 272
Query: 181 XLMHCHLDVHITWGLAMAFLVEDGVGEMQSLEAXXXDXXIC* 306
LMHCHLDVHITWGLAMAFLVEDGVGE++SLEA D +C*
Sbjct: 271 WLMHCHLDVHITWGLAMAFLVEDGVGELESLEAPPADLPVC* 146
Score = 188 bits (405), Expect = 4e-047
Identities = 78/100 (78%), Positives = 81/100 (81%)
Frame = -2 / +3
Query: 302 QMXXSXXXASSDCISPTPSSTRNAMARPQVMCTSRWQCMSXXPGLSATKRMTAQPLTGTP 123
Q S AS D SPTPSSTRNAMARPQVMCTS+WQC+S PGLSAT RMTA P TGTP
Sbjct: 150 QTGKSAGGASRDSSSPTPSSTRNAMARPQVMCTSKWQCISHTPGLSATNRMTAHPFTGTP 329
Query: 122 TVFLMGGSSMLKLAVSAXASKLPKPSARM*KS*PWRWMGW 3
TVFL+GGSSML AVS ASKLP PSARM*KS*PWRWMGW
Sbjct: 330 TVFLIGGSSMLNFAVSVAASKLPNPSARM*KS*PWRWMGW 449
Score = 112 bits (240), Expect = 2e-024
Identities = 46/64 (71%), Positives = 50/64 (78%)
Frame = -1 / +2
Query: 303 ADXXVXXXRLQ*LHLPDAVLHQERHGETPGDVHVQVAVHEXXPGIIRHEADDRPAVDRHA 124
AD V RLQ L LP+AVLHQERHGE PGDVH+Q+AVH+ P IIRHE DDRP V RHA
Sbjct: 149 ADRQVCRRRLQRLQLPNAVLHQERHGEAPGDVHIQMAVHQPHPRIIRHEPDDRPPVHRHA 328
Query: 123 HRVP 112
HRVP
Sbjct: 329 HRVP 340
>gb|CX608565.1|CX608565 ANR1_39_H01.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_39_H01_A002 3', mRNA sequence
Length = 448
Score = 228 bits (492), Expect = 4e-059
Identities = 89/102 (87%), Positives = 92/102 (90%)
Frame = +1 / +1
Query: 1 NHPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGX 180
NHPIHLHGYDFYILAEGFGNFDA DTA FNMDDPPMRNTVGVPVNGWAVIRFVADNPG
Sbjct: 1 NHPIHLHGYDFYILAEGFGNFDAATDTAKFNMDDPPMRNTVGVPVNGWAVIRFVADNPGV 180
Query: 181 XLMHCHLDVHITWGLAMAFLVEDGVGEMQSLEAXXXDXXIC* 306
LMHCHLDVHITWGLAMAFLVEDGVGE++SLEA D +C*
Sbjct: 181 WLMHCHLDVHITWGLAMAFLVEDGVGELESLEAPPADLPVC* 306
Score = 188 bits (405), Expect = 4e-047
Identities = 78/100 (78%), Positives = 81/100 (81%)
Frame = -2 / -3
Query: 302 QMXXSXXXASSDCISPTPSSTRNAMARPQVMCTSRWQCMSXXPGLSATKRMTAQPLTGTP 123
Q S AS D SPTPSSTRNAMARPQVMCTS+WQC+S PGLSAT RMTA P TGTP
Sbjct: 302 QTGKSAGGASRDSSSPTPSSTRNAMARPQVMCTSKWQCISHTPGLSATNRMTAHPFTGTP 123
Query: 122 TVFLMGGSSMLKLAVSAXASKLPKPSARM*KS*PWRWMGW 3
TVFL+GGSSML AVS ASKLP PSARM*KS*PWRWMGW
Sbjct: 122 TVFLIGGSSMLNFAVSVAASKLPNPSARM*KS*PWRWMGW 3
Score = 112 bits (240), Expect = 2e-024
Identities = 46/64 (71%), Positives = 50/64 (78%)
Frame = -1 / -2
Query: 303 ADXXVXXXRLQ*LHLPDAVLHQERHGETPGDVHVQVAVHEXXPGIIRHEADDRPAVDRHA 124
AD V RLQ L LP+AVLHQERHGE PGDVH+Q+AVH+ P IIRHE DDRP V RHA
Sbjct: 303 ADRQVCRRRLQRLQLPNAVLHQERHGEAPGDVHIQMAVHQPHPRIIRHEPDDRPPVHRHA 124
Query: 123 HRVP 112
HRVP
Sbjct: 123 HRVP 112
>gb|CX615427.1|CX615427 GABR1_20_C07.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_20_C07_A002 3', mRNA sequence
Length = 645
Score = 228 bits (492), Expect = 4e-059
Identities = 89/102 (87%), Positives = 92/102 (90%)
Frame = +1 / +1
Query: 1 NHPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGX 180
NHPIHLHGYDFYILAEGFGNFDA DTA FNMDDPPMRNTVGVPVNGWAVIRFVADNPG
Sbjct: 112 NHPIHLHGYDFYILAEGFGNFDAATDTAKFNMDDPPMRNTVGVPVNGWAVIRFVADNPGV 291
Query: 181 XLMHCHLDVHITWGLAMAFLVEDGVGEMQSLEAXXXDXXIC* 306
LMHCHLDVHITWGLAMAFLVEDGVGE++SLEA D +C*
Sbjct: 292 WLMHCHLDVHITWGLAMAFLVEDGVGELESLEAPPADLPVC* 417
Score = 188 bits (405), Expect = 4e-047
Identities = 78/100 (78%), Positives = 81/100 (81%)
Frame = -2 / -2
Query: 302 QMXXSXXXASSDCISPTPSSTRNAMARPQVMCTSRWQCMSXXPGLSATKRMTAQPLTGTP 123
Q S AS D SPTPSSTRNAMARPQVMCTS+WQC+S PGLSAT RMTA P TGTP
Sbjct: 413 QTGKSAGGASRDSSSPTPSSTRNAMARPQVMCTSKWQCISHTPGLSATNRMTAHPFTGTP 234
Query: 122 TVFLMGGSSMLKLAVSAXASKLPKPSARM*KS*PWRWMGW 3
TVFL+GGSSML AVS ASKLP PSARM*KS*PWRWMGW
Sbjct: 233 TVFLIGGSSMLNFAVSVAASKLPNPSARM*KS*PWRWMGW 114
Score = 112 bits (240), Expect = 2e-024
Identities = 46/64 (71%), Positives = 50/64 (78%)
Frame = -1 / -1
Query: 303 ADXXVXXXRLQ*LHLPDAVLHQERHGETPGDVHVQVAVHEXXPGIIRHEADDRPAVDRHA 124
AD V RLQ L LP+AVLHQERHGE PGDVH+Q+AVH+ P IIRHE DDRP V RHA
Sbjct: 414 ADRQVCRRRLQRLQLPNAVLHQERHGEAPGDVHIQMAVHQPHPRIIRHEPDDRPPVHRHA 235
Query: 123 HRVP 112
HRVP
Sbjct: 234 HRVP 223
>gb|CX615412.1|CX615412 GABR1_20_B03.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_20_B03_A002 3', mRNA sequence
Length = 684
Score = 225 bits (485), Expect = 3e-058
Identities = 88/102 (86%), Positives = 91/102 (89%)
Frame = +1 / +1
Query: 1 NHPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGX 180
NHPIHLHGYDFYILAEGFGNFDA DTA FNMDDPPM NTVGVPVNGWAVIRFVADNPG
Sbjct: 151 NHPIHLHGYDFYILAEGFGNFDAATDTAKFNMDDPPMGNTVGVPVNGWAVIRFVADNPGV 330
Query: 181 XLMHCHLDVHITWGLAMAFLVEDGVGEMQSLEAXXXDXXIC* 306
LMHCHLDVHITWGLAMAFLVEDGVGE++SLEA D +C*
Sbjct: 331 WLMHCHLDVHITWGLAMAFLVEDGVGELESLEAPPADLPVC* 456
Score = 185 bits (398), Expect = 3e-046
Identities = 77/100 (77%), Positives = 80/100 (80%)
Frame = -2 / -2
Query: 302 QMXXSXXXASSDCISPTPSSTRNAMARPQVMCTSRWQCMSXXPGLSATKRMTAQPLTGTP 123
Q S AS D SPTPSSTRNAMARPQVMCTS+WQC+S PGLSAT RMTA P TGTP
Sbjct: 452 QTGKSAGGASRDSSSPTPSSTRNAMARPQVMCTSKWQCISHTPGLSATNRMTAHPFTGTP 273
Query: 122 TVFLMGGSSMLKLAVSAXASKLPKPSARM*KS*PWRWMGW 3
TVF +GGSSML AVS ASKLP PSARM*KS*PWRWMGW
Sbjct: 272 TVFPIGGSSMLNFAVSVAASKLPNPSARM*KS*PWRWMGW 153
Score = 112 bits (240), Expect = 2e-024
Identities = 46/64 (71%), Positives = 50/64 (78%)
Frame = -1 / -1
Query: 303 ADXXVXXXRLQ*LHLPDAVLHQERHGETPGDVHVQVAVHEXXPGIIRHEADDRPAVDRHA 124
AD V RLQ L LP+AVLHQERHGE PGDVH+Q+AVH+ P IIRHE DDRP V RHA
Sbjct: 453 ADRQVCRRRLQRLQLPNAVLHQERHGEAPGDVHIQMAVHQPHPRIIRHEPDDRPPVHRHA 274
Query: 123 HRVP 112
HRVP
Sbjct: 273 HRVP 262
>gb|CF431128.1|CF431128 NIT1_6_G10.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_6_G10_A002 3', mRNA sequence
Length = 512
Score = 213 bits (459), Expect = 1e-054
Identities = 84/97 (86%), Positives = 87/97 (89%)
Frame = +1 / +1
Query: 16 LHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXXLMHC 195
LHGYDFYILAEGFGNFDA DTA FNMDDPPMRNTVGVPVNGWAVIRFVADNPG LMHC
Sbjct: 1 LHGYDFYILAEGFGNFDAATDTAKFNMDDPPMRNTVGVPVNGWAVIRFVADNPGVWLMHC 180
Query: 196 HLDVHITWGLAMAFLVEDGVGEMQSLEAXXXDXXIC* 306
HLDVHITWGLAMAFLVEDGVGE++SLEA D +C*
Sbjct: 181 HLDVHITWGLAMAFLVEDGVGELESLEAPPADLPVC* 291
Score = 171 bits (368), Expect = 5e-042
Identities = 73/95 (76%), Positives = 76/95 (80%)
Frame = -2 / -1
Query: 302 QMXXSXXXASSDCISPTPSSTRNAMARPQVMCTSRWQCMSXXPGLSATKRMTAQPLTGTP 123
Q S AS D SPTPSSTRNAMARPQVMCTS+WQC+S PGLSAT RMTA P TGTP
Sbjct: 287 QTGKSAGGASKDSSSPTPSSTRNAMARPQVMCTSKWQCISHTPGLSATNRMTAHPFTGTP 108
Query: 122 TVFLMGGSSMLKLAVSAXASKLPKPSARM*KS*PW 18
TVFL+GGSSML AVS ASKLP PSARM*KS*PW
Sbjct: 107 TVFLIGGSSMLNFAVSVAASKLPNPSARM*KS*PW 3
Score = 112 bits (240), Expect = 2e-024
Identities = 46/64 (71%), Positives = 50/64 (78%)
Frame = -1 / -3
Query: 303 ADXXVXXXRLQ*LHLPDAVLHQERHGETPGDVHVQVAVHEXXPGIIRHEADDRPAVDRHA 124
AD V RLQ L LP+AVLHQERHGE PGDVH+Q+AVH+ P IIRHE DDRP V RHA
Sbjct: 288 ADRQVCRRRLQRLQLPNAVLHQERHGEAPGDVHIQMAVHQPHPRIIRHEPDDRPPVHRHA 109
Query: 123 HRVP 112
HRVP
Sbjct: 108 HRVP 97
>gb|CW467144.1|CW467144 fsbb001f218l09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f218l09, DNA
sequence
Length = 676
Score = 201 bits (434), Expect = 4e-051
Identities = 80/93 (86%), Positives = 83/93 (89%)
Frame = +1 / -1
Query: 28 DFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXXLMHCHLDV 207
DFYILAEGFGNFDA DTA FNMDDPPMRNTVGVPVNGWAVIRFVADNPG LMHCHLDV
Sbjct: 676 DFYILAEGFGNFDAATDTAKFNMDDPPMRNTVGVPVNGWAVIRFVADNPGVWLMHCHLDV 497
Query: 208 HITWGLAMAFLVEDGVGEMQSLEAXXXDXXIC* 306
HITWGLAMAFLVEDGVGE++SLEA D +C*
Sbjct: 496 HITWGLAMAFLVEDGVGELESLEAPPADLPVC* 398
Score = 160 bits (344), Expect = 9e-039
Identities = 69/91 (75%), Positives = 72/91 (79%)
Frame = -2 / +3
Query: 302 QMXXSXXXASSDCISPTPSSTRNAMARPQVMCTSRWQCMSXXPGLSATKRMTAQPLTGTP 123
Q S AS D SPTPSSTRNAMARPQVMCTS+WQC+S PGLSAT RMTA P TGTP
Sbjct: 402 QTGKSAGGASRDSSSPTPSSTRNAMARPQVMCTSKWQCISHTPGLSATNRMTAHPFTGTP 581
Query: 122 TVFLMGGSSMLKLAVSAXASKLPKPSARM*K 30
TVFL+GGSSML AVS ASKLP PSARM*K
Sbjct: 582 TVFLIGGSSMLNFAVSVAASKLPNPSARM*K 674
Score = 112 bits (240), Expect = 2e-024
Identities = 46/64 (71%), Positives = 50/64 (78%)
Frame = -1 / +2
Query: 303 ADXXVXXXRLQ*LHLPDAVLHQERHGETPGDVHVQVAVHEXXPGIIRHEADDRPAVDRHA 124
AD V RLQ L LP+AVLHQERHGE PGDVH+Q+AVH+ P IIRHE DDRP V RHA
Sbjct: 401 ADRQVCRRRLQRLQLPNAVLHQERHGEAPGDVHIQMAVHQPHPRIIRHEPDDRPPVHRHA 580
Query: 123 HRVP 112
HRVP
Sbjct: 581 HRVP 592
>gb|CW222901.1|CW222901 104_658_11202621_116_37181_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11202621, DNA
sequence
Length = 660
Score = 199 bits (429), Expect = 2e-050
Identities = 78/102 (76%), Positives = 83/102 (81%)
Frame = +1 / +1
Query: 1 NHPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGX 180
NHPIH+HGYDF+ILAEGFGNFD D FN DPP RNTV VPVNGWAVI+FVADNPG
Sbjct: 238 NHPIHIHGYDFFILAEGFGNFDPKKDVEKFNYVDPPQRNTVAVPVNGWAVIQFVADNPGV 417
Query: 181 XLMHCHLDVHITWGLAMAFLVEDGVGEMQSLEAXXXDXXIC* 306
LMHCHLDVHITWGLAMAFLVEDG GE+QSLE D +C*
Sbjct: 418 WLMHCHLDVHITWGLAMAFLVEDGYGELQSLEPPPVDLPMC* 543
Score = 166 bits (357), Expect = 2e-040
Identities = 72/107 (67%), Positives = 75/107 (70%)
Frame = -2 / -2
Query: 323 CKTRMS*QMXXSXXXASSDCISPTPSSTRNAMARPQVMCTSRWQCMSXXPGLSATKRMTA 144
C * M S S DC SP PSSTR A+ARPQVMCTSRWQCMS PGLSAT MTA
Sbjct: 560 CLQADH*HMGRSTGGGSRDCSSPYPSSTRKAIARPQVMCTSRWQCMSHTPGLSATNWMTA 381
Query: 143 QPLTGTPTVFLMGGSSMLKLAVSAXASKLPKPSARM*KS*PWRWMGW 3
QPLTGT TVF GGS+ L + S SKLPKPSARM KS*PW WMGW
Sbjct: 380 QPLTGTATVFRCGGST*LNFSTSFLGSKLPKPSARMKKS*PWMWMGW 240
>gb|CW321938.1|CW321938 104_815_11475822_116_35944_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11475822, DNA
sequence
Length = 577
Score = 199 bits (429), Expect = 2e-050
Identities = 78/102 (76%), Positives = 83/102 (81%)
Frame = +1 / -2
Query: 1 NHPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGX 180
NHPIH+HGYDF+ILAEGFGNFD D FN DPP RNTV VPVNGWAVI+FVADNPG
Sbjct: 360 NHPIHIHGYDFFILAEGFGNFDPKKDVEKFNYVDPPQRNTVAVPVNGWAVIQFVADNPGV 181
Query: 181 XLMHCHLDVHITWGLAMAFLVEDGVGEMQSLEAXXXDXXIC* 306
LMHCHLDVHITWGLAMAFLVEDG GE+QSLE D +C*
Sbjct: 180 WLMHCHLDVHITWGLAMAFLVEDGYGELQSLEPPPVDLPMC* 55
Score = 166 bits (357), Expect = 2e-040
Identities = 72/107 (67%), Positives = 75/107 (70%)
Frame = -2 / +2
Query: 323 CKTRMS*QMXXSXXXASSDCISPTPSSTRNAMARPQVMCTSRWQCMSXXPGLSATKRMTA 144
C * M S S DC SP PSSTR A+ARPQVMCTSRWQCMS PGLSAT MTA
Sbjct: 38 CLQADH*HMGRSTGGGSRDCSSPYPSSTRKAIARPQVMCTSRWQCMSHTPGLSATNWMTA 217
Query: 143 QPLTGTPTVFLMGGSSMLKLAVSAXASKLPKPSARM*KS*PWRWMGW 3
QPLTGT TVF GGS+ L + S SKLPKPSARM KS*PW WMGW
Sbjct: 218 QPLTGTATVFRCGGST*LNFSTSFLGSKLPKPSARMKKS*PWMWMGW 358
>gb|CF071060.1|CF071060 FE1_15_G11.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_15_G11_A002 3', mRNA sequence
Length = 665
Score = 194 bits (419), Expect = 4e-049
Identities = 77/102 (75%), Positives = 82/102 (80%)
Frame = +1 / +3
Query: 1 NHPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGX 180
NHPI +HGYDF+ILAEGFGNFD D FN DPP RNTV VPVNGWAVI+FVADNPG
Sbjct: 162 NHPIPIHGYDFFILAEGFGNFDPKKDVEKFNYVDPPQRNTVAVPVNGWAVIQFVADNPGV 341
Query: 181 XLMHCHLDVHITWGLAMAFLVEDGVGEMQSLEAXXXDXXIC* 306
LMHCHLDVHITWGLAMAFLVEDG GE+QSLE D +C*
Sbjct: 342 WLMHCHLDVHITWGLAMAFLVEDGYGELQSLEPPPVDLPMC* 467
Score = 160 bits (344), Expect = 9e-039
Identities = 71/107 (66%), Positives = 74/107 (69%)
Frame = -2 / -2
Query: 323 CKTRMS*QMXXSXXXASSDCISPTPSSTRNAMARPQVMCTSRWQCMSXXPGLSATKRMTA 144
C * M S S DC SP PSSTR A+ARPQVMCTSRWQCMS PGLSAT MTA
Sbjct: 484 CLQADH*HMGRSTGGGSRDCSSPYPSSTRKAIARPQVMCTSRWQCMSHTPGLSATNWMTA 305
Query: 143 QPLTGTPTVFLMGGSSMLKLAVSAXASKLPKPSARM*KS*PWRWMGW 3
QPLTGT TVF GGS+ L + S SKLPKPSARM KS*PW MGW
Sbjct: 304 QPLTGTATVFRCGGST*LNFSTSFLGSKLPKPSARMKKS*PWMGMGW 164
>gb|CW246412.1|CW246412 104_707_11221331_148_37606_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221331, DNA
sequence
Length = 680
Score = 176 bits (379), Expect = 1e-043
Identities = 67/72 (93%), Positives = 67/72 (93%)
Frame = +1 / +1
Query: 1 NHPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGX 180
NHPIHLHGYDFYILAEGFGNFDA DTA FNMDDPPMRNTVGVPVNGWAVIRFVADNPG
Sbjct: 463 NHPIHLHGYDFYILAEGFGNFDAATDTAKFNMDDPPMRNTVGVPVNGWAVIRFVADNPGV 642
Query: 181 XLMHCHLDVHIT 216
LMHCHLDVHIT
Sbjct: 643 WLMHCHLDVHIT 678
Score = 149 bits (319), Expect = 3e-035
Identities = 59/72 (81%), Positives = 62/72 (86%)
Frame = -2 / -1
Query: 218 QVMCTSRWQCMSXXPGLSATKRMTAQPLTGTPTVFLMGGSSMLKLAVSAXASKLPKPSAR 39
QVMCTS+WQC+S PGLSAT RMTA P TGTPTVFL+GGSSML AVS ASKLP PSAR
Sbjct: 680 QVMCTSKWQCISHTPGLSATNRMTAHPFTGTPTVFLIGGSSMLNFAVSVAASKLPNPSAR 501
Query: 38 M*KS*PWRWMGW 3
M*KS*PWRWMGW
Sbjct: 500 M*KS*PWRWMGW 465
>gb|CW246411.1|CW246411 104_707_11221331_148_35088_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221331, DNA
sequence
Length = 677
Score = 174 bits (374), Expect = 7e-043
Identities = 66/71 (92%), Positives = 66/71 (92%)
Frame = +1 / +1
Query: 1 NHPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGX 180
NHPIHLHGYDFYILAEGFGNFDA DTA FNMDDPPMRNTVGVPVNGWAVIRFVADNPG
Sbjct: 463 NHPIHLHGYDFYILAEGFGNFDAATDTAKFNMDDPPMRNTVGVPVNGWAVIRFVADNPGV 642
Query: 181 XLMHCHLDVHI 213
LMHCHLDVHI
Sbjct: 643 WLMHCHLDVHI 675
Score = 146 bits (314), Expect = 1e-034
Identities = 58/71 (81%), Positives = 61/71 (85%)
Frame = -2 / -1
Query: 215 VMCTSRWQCMSXXPGLSATKRMTAQPLTGTPTVFLMGGSSMLKLAVSAXASKLPKPSARM 36
VMCTS+WQC+S PGLSAT RMTA P TGTPTVFL+GGSSML AVS ASKLP PSARM
Sbjct: 677 VMCTSKWQCISHTPGLSATNRMTAHPFTGTPTVFLIGGSSMLNFAVSVAASKLPNPSARM 498
Query: 35 *KS*PWRWMGW 3
*KS*PWRWMGW
Sbjct: 497 *KS*PWRWMGW 465
>gb|CW090817.1|CW090817 104_436_10949489_114_32604_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10949489, DNA
sequence
Length = 739
Score = 168 bits (361), Expect = 4e-041
Identities = 62/100 (62%), Positives = 76/100 (76%)
Frame = +1 / +1
Query: 4 HPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXX 183
HP+H+HGY F++LA GFGN+D D A FN+ DPP RNT+GVPV GWAV+RFVADNPG
Sbjct: 226 HPMHIHGYHFFVLATGFGNYDPRRDEAKFNLVDPPSRNTIGVPVGGWAVVRFVADNPGVW 405
Query: 184 LMHCHLDVHITWGLAMAFLVEDGVGEMQSLEAXXXDXXIC 303
L+HCH+D H+T GLAMA LVEDG E+++ A D IC
Sbjct: 406 LVHCHIDAHLTGGLAMALLVEDGEAELEATIAPPLDLPIC 525
Score = 108 bits (230), Expect = 5e-023
Identities = 55/105 (52%), Positives = 59/105 (56%)
Frame = -2 / -3
Query: 320 KTRMS*QMXXSXXXASSDCISPTPSSTRNAMARPQVMCTSRWQCMSXXPGLSATKRMTAQ 141
K S M S A S +PSST +AMA P V S WQC S PGLSATKR TAQ
Sbjct: 542 KNLYSTHMGKSSGGAMVASSSASPSSTSSAMASPPVRWASMWQCTSHTPGLSATKRTTAQ 363
Query: 140 PLTGTPTVFLMGGSSMLKLAVSAXASKLPKPSARM*KS*PWRWMG 6
P TGTP V +GGS+ L LA S S LP P A K *PW MG
Sbjct: 362 PPTGTPMVLRLGGSTRLNLASSRRGS*LPNPVASTKKW*PWMCMG 228
>gb|CW260843.1|CW260843 104_727_11229185_116_35195_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11229185, DNA
sequence
Length = 629
Score = 168 bits (361), Expect = 4e-041
Identities = 62/100 (62%), Positives = 76/100 (76%)
Frame = +1 / +3
Query: 4 HPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXX 183
HP+H+HGY F++LA GFGN+D D A FN+ DPP RNT+GVPV GWAV+RFVADNPG
Sbjct: 306 HPMHIHGYHFFVLATGFGNYDPRRDEAKFNLVDPPSRNTIGVPVGGWAVVRFVADNPGVW 485
Query: 184 LMHCHLDVHITWGLAMAFLVEDGVGEMQSLEAXXXDXXIC 303
L+HCH+D H+T GLAMA LVEDG E+++ A D IC
Sbjct: 486 LVHCHIDAHLTGGLAMALLVEDGEAELEATIAPPLDLPIC 605
Score = 108 bits (230), Expect = 5e-023
Identities = 55/105 (52%), Positives = 59/105 (56%)
Frame = -2 / -2
Query: 320 KTRMS*QMXXSXXXASSDCISPTPSSTRNAMARPQVMCTSRWQCMSXXPGLSATKRMTAQ 141
K S M S A S +PSST +AMA P V S WQC S PGLSATKR TAQ
Sbjct: 622 KNLYSTHMGKSSGGAMVASSSASPSSTSSAMASPPVRWASMWQCTSHTPGLSATKRTTAQ 443
Query: 140 PLTGTPTVFLMGGSSMLKLAVSAXASKLPKPSARM*KS*PWRWMG 6
P TGTP V +GGS+ L LA S S LP P A K *PW MG
Sbjct: 442 PPTGTPMVLRLGGSTRLNLASSRRGS*LPNPVASTKKW*PWMCMG 308
>gb|CW268542.1|CW268542 104_739_11401361_148_35310_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11401361, DNA
sequence
Length = 748
Score = 168 bits (361), Expect = 4e-041
Identities = 62/100 (62%), Positives = 76/100 (76%)
Frame = +1 / -3
Query: 4 HPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXX 183
HP+H+HGY F++LA GFGN+D D A FN+ DPP RNT+GVPV GWAV+RFVADNPG
Sbjct: 653 HPMHIHGYHFFVLATGFGNYDPRRDEAKFNLVDPPSRNTIGVPVGGWAVVRFVADNPGVW 474
Query: 184 LMHCHLDVHITWGLAMAFLVEDGVGEMQSLEAXXXDXXIC 303
L+HCH+D H+T GLAMA LVEDG E+++ A D IC
Sbjct: 473 LVHCHIDAHLTGGLAMALLVEDGEAELEATIAPPLDLPIC 354
Score = 108 bits (230), Expect = 5e-023
Identities = 55/105 (52%), Positives = 59/105 (56%)
Frame = -2 / +1
Query: 320 KTRMS*QMXXSXXXASSDCISPTPSSTRNAMARPQVMCTSRWQCMSXXPGLSATKRMTAQ 141
K S M S A S +PSST +AMA P V S WQC S PGLSATKR TAQ
Sbjct: 337 KNLYSTHMGKSSGGAMVASSSASPSSTSSAMASPPVRWASMWQCTSHTPGLSATKRTTAQ 516
Query: 140 PLTGTPTVFLMGGSSMLKLAVSAXASKLPKPSARM*KS*PWRWMG 6
P TGTP V +GGS+ L LA S S LP P A K *PW MG
Sbjct: 517 PPTGTPMVLRLGGSTRLNLASSRRGS*LPNPVASTKKW*PWMCMG 651
>gb|CW296695.1|CW296695 104_778_11461650_116_35629_069 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11461650, DNA
sequence
Length = 690
Score = 161 bits (346), Expect = 5e-039
Identities = 60/98 (61%), Positives = 74/98 (75%)
Frame = +1 / +1
Query: 10 IHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXXLM 189
+H+HGY F++LA GFGN+D D A FN+ DPP RNT+GVPV GWAV+RFVADNPG L+
Sbjct: 1 MHIHGYHFFVLATGFGNYDPRRDEAKFNLVDPPSRNTIGVPVGGWAVVRFVADNPGVWLV 180
Query: 190 HCHLDVHITWGLAMAFLVEDGVGEMQSLEAXXXDXXIC 303
HCH+D H+T GLAMA LVEDG E+++ A D IC
Sbjct: 181 HCHIDAHLTGGLAMALLVEDGEAELEATIAPPLDLPIC 294
Score = 104 bits (222), Expect = 6e-022
Identities = 53/101 (52%), Positives = 57/101 (56%)
Frame = -2 / -2
Query: 320 KTRMS*QMXXSXXXASSDCISPTPSSTRNAMARPQVMCTSRWQCMSXXPGLSATKRMTAQ 141
K S M S A S +PSST +AMA P V S WQC S PGLSATKR TAQ
Sbjct: 311 KNLYSTHMGKSSGGAMVASSSASPSSTSSAMASPPVRWASMWQCTSHTPGLSATKRTTAQ 132
Query: 140 PLTGTPTVFLMGGSSMLKLAVSAXASKLPKPSARM*KS*PW 18
P TGTP V +GGS+ L LA S S LP P A K *PW
Sbjct: 131 PPTGTPMVLRLGGSTRLNLASSRRGS*LPNPVASTKKW*PW 9
>gb|CW148317.1|CW148317 104_542_11140356_148_35007_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11140356, DNA
sequence
Length = 669
Score = 127 bits (271), Expect(2) = 6e-039
Identities = 51/62 (82%), Positives = 54/62 (87%)
Frame = +1 / -1
Query: 121 VGVPVNGWAVIRFVADNPGXXLMHCHLDVHITWGLAMAFLVEDGVGEMQSLEAXXXDXXI 300
VGVPVN WAVIRFVADNPG LMHCHLDVHITWGLAMAFLVEDGVGE++SLEA D +
Sbjct: 393 VGVPVNRWAVIRFVADNPGVWLMHCHLDVHITWGLAMAFLVEDGVGELESLEAPPADLPV 214
Query: 301 C* 306
C*
Sbjct: 213 C* 208
Score = 105 bits (225), Expect = 2e-022
Identities = 42/64 (65%), Positives = 47/64 (73%)
Frame = -1 / +1
Query: 303 ADXXVXXXRLQ*LHLPDAVLHQERHGETPGDVHVQVAVHEXXPGIIRHEADDRPAVDRHA 124
AD V RLQ LP+A+ HQERHGE PGDVH+Q+AVH+ P IIRHE DDRP V RHA
Sbjct: 211 ADRQVCRRRLQRFELPNAIFHQERHGEAPGDVHIQMAVHQPHPRIIRHEPDDRPPVHRHA 390
Query: 123 HRVP 112
HR P
Sbjct: 391 HRPP 402
Score = 105 bits (223), Expect = 5e-022
Identities = 44/61 (72%), Positives = 46/61 (75%)
Frame = -2 / +2
Query: 302 QMXXSXXXASSDCISPTPSSTRNAMARPQVMCTSRWQCMSXXPGLSATKRMTAQPLTGTP 123
Q S AS D SPTPSSTRNAMARPQVMCTS+WQC+S PGLSAT RMTA TGTP
Sbjct: 212 QTGRSAGGASRDSSSPTPSSTRNAMARPQVMCTSKWQCISHTPGLSATNRMTAHLFTGTP 391
Query: 122 T 120
T
Sbjct: 392 T 394
Score = 54.2 bits (112), Expect(2) = 6e-039
Identities = 20/24 (83%), Positives = 20/24 (83%)
Frame = +1 / -3
Query: 52 FGNFDAXADTASFNMDDPPMRNTV 123
FGNFD DTA FNMDDPPMRNTV
Sbjct: 469 FGNFDEATDTAKFNMDDPPMRNTV 398
>gb|CL178579.1|CL178579 104_386_10894676_148_31911_356 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10894676, DNA
sequence
Length = 734
Score = 153 bits (329), Expect = 1e-036
Identities = 62/84 (73%), Positives = 65/84 (77%)
Frame = +1 / -3
Query: 55 GNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXXLMHCHLDVHITWGLAMA 234
GNFD D FN DPP RNTV VPVNGWAVI+FVADNPG LMHCHLDVHITWGLAMA
Sbjct: 732 GNFDPKKDVEKFNYVDPPQRNTVAVPVNGWAVIQFVADNPGVWLMHCHLDVHITWGLAMA 553
Query: 235 FLVEDGVGEMQSLEAXXXDXXIC* 306
FLVEDG GE+QSLE D +C*
Sbjct: 552 FLVEDGYGELQSLEPPPVDLPMC* 481
Score = 127 bits (271), Expect = 1e-028
Identities = 57/90 (63%), Positives = 60/90 (66%)
Frame = -2 / +2
Query: 323 CKTRMS*QMXXSXXXASSDCISPTPSSTRNAMARPQVMCTSRWQCMSXXPGLSATKRMTA 144
C * M S S DC SP PSSTR A+ARPQVMCTSRWQCMS PGLSAT MTA
Sbjct: 464 CLQADH*HMGRSTGGGSRDCSSPYPSSTRKAIARPQVMCTSRWQCMSHTPGLSATNWMTA 643
Query: 143 QPLTGTPTVFLMGGSSMLKLAVSAXASKLP 54
QPLTGT TVF GGS+ L + S SKLP
Sbjct: 644 QPLTGTATVFRCGGST*LNFSTSFLGSKLP 733
>gb|BE360607.1|BE360607 DG1_64_C02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 640
Score = 153 bits (329), Expect = 1e-036
Identities = 56/108 (51%), Positives = 75/108 (69%)
Frame = +1 / +1
Query: 1 NHPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGX 180
+HP+HLHGYDF+++ +GFGNFD D ++N+ DP RNT+ VP GW +RF+ADNPG
Sbjct: 196 SHPLHLHGYDFFVVGQGFGNFDPVNDPPNYNLADPVERNTISVPTAGWVAVRFLADNPGV 375
Query: 181 XLMHCHLDVHITWGLAMAFLVEDGVGEMQSLEAXXXDXXIC*LILVLH 324
LMHCH DVH++WGL+MA+LV DG Q + D C* ++V H
Sbjct: 376 WLMHCHFDVHLSWGLSMAWLVNDGPLPNQKMLPPPSDLPKC**LIVHH 519
>gb|CF433776.1|CF433776 NIT1_30_H07.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_30_H07_A002 3', mRNA sequence
Length = 641
Score = 146 bits (314), Expect = 1e-034
Identities = 56/103 (54%), Positives = 70/103 (67%)
Frame = +1 / +3
Query: 1 NHPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGX 180
+HP+HLHG++F+++ +G+GN+D D FN+ DP RNTVGVP GW IRF+ADNPG
Sbjct: 81 SHPLHLHGFNFFVVGQGYGNYDPVNDPPKFNLVDPVERNTVGVPAGGWVAIRFLADNPGV 260
Query: 181 XLMHCHLDVHITWGLAMAFLVEDGVGEMQSLEAXXXDXXIC*L 309
MHCHL+VH TWGL MA+LV DG Q L D C*L
Sbjct: 261 WFMHCHLEVHTTWGLRMAWLVLDGSLPHQKLLPPPSDLPKC*L 389
>gb|CF488930.1|CF488930 POL1_53_C11.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_53_C11_A002 3', mRNA sequence
Length = 609
Score = 146 bits (314), Expect = 1e-034
Identities = 56/103 (54%), Positives = 70/103 (67%)
Frame = +1 / +3
Query: 1 NHPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGX 180
+HP+HLHG++F+++ +G+GN+D D FN+ DP RNTVGVP GW IRF+ADNPG
Sbjct: 78 SHPLHLHGFNFFVVGQGYGNYDPVNDPPKFNLVDPVERNTVGVPAGGWVAIRFLADNPGV 257
Query: 181 XLMHCHLDVHITWGLAMAFLVEDGVGEMQSLEAXXXDXXIC*L 309
MHCHL+VH TWGL MA+LV DG Q L D C*L
Sbjct: 258 WFMHCHLEVHTTWGLRMAWLVLDGSLPHQKLLPPPSDLPKC*L 386
>gb|CN130229.1|CN130229 RHOH1_40_C10.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_40_C10_A002 3', mRNA sequence
Length = 716
Score = 146 bits (314), Expect = 1e-034
Identities = 56/103 (54%), Positives = 70/103 (67%)
Frame = +1 / +1
Query: 1 NHPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGX 180
+HP+HLHG++F+++ +G+GN+D D FN+ DP RNTVGVP GW IRF+ADNPG
Sbjct: 157 SHPLHLHGFNFFVVGQGYGNYDPVNDPPKFNLVDPVERNTVGVPAGGWVAIRFLADNPGV 336
Query: 181 XLMHCHLDVHITWGLAMAFLVEDGVGEMQSLEAXXXDXXIC*L 309
MHCHL+VH TWGL MA+LV DG Q L D C*L
Sbjct: 337 WFMHCHLEVHTTWGLRMAWLVLDGSLPHQKLLPPPSDLPKC*L 465
>gb|CX610048.1|CX610048 ANR1_16_G06.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_16_G06_A002 3', mRNA sequence
Length = 762
Score = 146 bits (314), Expect = 1e-034
Identities = 56/103 (54%), Positives = 70/103 (67%)
Frame = +1 / +2
Query: 1 NHPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGX 180
+HP+HLHG++F+++ +G+GN+D D FN+ DP RNTVGVP GW IRF+ADNPG
Sbjct: 194 SHPLHLHGFNFFVVGQGYGNYDPVNDPPKFNLVDPVERNTVGVPAGGWVAIRFLADNPGV 373
Query: 181 XLMHCHLDVHITWGLAMAFLVEDGVGEMQSLEAXXXDXXIC*L 309
MHCHL+VH TWGL MA+LV DG Q L D C*L
Sbjct: 374 WFMHCHLEVHTTWGLRMAWLVLDGSLPHQKLLPPPSDLPKC*L 502
>gb|CW222902.1|CW222902 104_658_11202621_148_37182_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11202621, DNA
sequence
Length = 697
Score = 144 bits (308), Expect = 9e-034
Identities = 58/77 (75%), Positives = 61/77 (79%)
Frame = +1 / -3
Query: 76 DTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXXLMHCHLDVHITWGLAMAFLVEDGV 255
D FN DPP RNTV VPVNGWAVI+FVADNPG LMHCHLDVHITWGLAMAFLVEDG
Sbjct: 686 DVEKFNYVDPPQRNTVAVPVNGWAVIQFVADNPGVWLMHCHLDVHITWGLAMAFLVEDGY 507
Query: 256 GEMQSLEAXXXDXXIC* 306
GE+QSLE D +C*
Sbjct: 506 GELQSLEPPPVDLPMC* 456
Score = 119 bits (254), Expect = 2e-026
Identities = 53/83 (63%), Positives = 56/83 (67%)
Frame = -2 / +1
Query: 323 CKTRMS*QMXXSXXXASSDCISPTPSSTRNAMARPQVMCTSRWQCMSXXPGLSATKRMTA 144
C * M S S DC SP PSSTR A+ARPQVMCTSRWQCMS PGLSAT MTA
Sbjct: 439 CLQADH*HMGRSTGGGSRDCSSPYPSSTRKAIARPQVMCTSRWQCMSHTPGLSATNWMTA 618
Query: 143 QPLTGTPTVFLMGGSSMLKLAVS 75
QPLTGT TVF GGS+ L + S
Sbjct: 619 QPLTGTATVFRCGGST*LNFSTS 687
>gb|CB927210.1|CB927210 ABA1_14_D11.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_14_D11_A012 3', mRNA sequence
Length = 543
Score = 142 bits (305), Expect = 2e-033
Identities = 55/108 (50%), Positives = 70/108 (64%)
Frame = +1 / +3
Query: 1 NHPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGX 180
+HP+HLHGY+F++LA+GFGN+D T FN+ +P RNTV VP GWAVIRF+A+NPG
Sbjct: 156 SHPMHLHGYNFFVLAQGFGNYDEATATPQFNLVNPQERNTVAVPTGGWAVIRFLANNPGM 335
Query: 181 XLMHCHLDVHITWGLAMAFLVEDGVGEMQSLEAXXXDXXIC*LILVLH 324
MHCH D H+ GL M F V+DG S+ D C*L+ H
Sbjct: 336 WFMHCHFDAHLDLGLGMVFEVQDGPTAETSVPPPPADLPHC*LLSANH 479
>gb|CW135608.1|CW135608 104_520_11117939_148_34834_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11117939, DNA
sequence
Length = 691
Score = 111 bits (236), Expect(2) = 2e-032
Identities = 37/59 (62%), Positives = 47/59 (79%)
Frame = +1 / -3
Query: 1 NHPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPG 177
+HP+HLHG+DF+++ +GFGN+D+ D A FN+DDP RNTVGVP GW IRF ADNPG
Sbjct: 665 SHPLHLHGFDFFVVGQGFGNYDSSKDPAKFNLDDPVQRNTVGVPSGGWVAIRFFADNPG 489
Score = 48.3 bits (99), Expect(2) = 2e-032
Identities = 21/44 (47%), Positives = 25/44 (56%)
Frame = +1 / -2
Query: 175 GXXLMHCHLDVHITWGLAMAFLVEDGVGEMQSLEAXXXDXXIC* 306
G MHCHL+VH +WGL MA++V DG Q L D C*
Sbjct: 414 GVWFMHCHLEVHTSWGLKMAWVVNDGPLPEQKLMPPPPDLPKC* 283
>gb|BF586409.1|BF586409 FM1_28_D10.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 529
Score = 138 bits (297), Expect = 3e-032
Identities = 56/114 (49%), Positives = 70/114 (61%)
Frame = +1 / +1
Query: 1 NHPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGX 180
+HP+HLHG++ ++ +G+GN+D D FN+ DP RNTVGVP W IRF+ADNPG
Sbjct: 70 SHPLHLHGFNLLVVGQGYGNYDPVNDPPKFNLVDPVERNTVGVPAGVWVAIRFLADNPGV 249
Query: 181 XLMHCHLDVHITWGLAMAFLVEDGVGEMQSLEAXXXDXXIC*LILVLHRGXXLI 342
MHCHL+VH TWGL MA+LV DG Q L D C*L L L+
Sbjct: 250 WFMHCHLEVHTTWGLRMAWLVLDGSLPHQKLLPPPSDLPKC*LEAALSLSLSLL 411
>gb|BZ781433.1|BZ781433 ii29b10.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ii29b10, DNA sequence
Length = 247
Score = 80.8 bits (170), Expect(2) = 1e-027
Identities = 31/44 (70%), Positives = 35/44 (79%)
Frame = -2 / +2
Query: 251 PSSTRNAMARPQVMCTSRWQCMSXXPGLSATKRMTAQPLTGTPT 120
P+STRN +AR Q M TS+WQC+S PGLSAT RMTA P TGTPT
Sbjct: 2 PTSTRNVLARTQAMSTSQWQCISHTPGLSATNRMTAHPFTGTPT 133
Score = 77.1 bits (162), Expect(2) = 8e-031
Identities = 33/46 (71%), Positives = 35/46 (76%)
Frame = +1 / -2
Query: 115 NTVGVPVNGWAVIRFVADNPGXXLMHCHLDVHITWGLAMAFLVEDG 252
++VGVPVNGWAVIR VADNPG LMHCH DV I LA FLVE G
Sbjct: 138 SSVGVPVNGWAVIRLVADNPGVWLMHCHWDVLIA*VLAKTFLVEVG 1
Score = 74.8 bits (157), Expect(2) = 8e-031
Identities = 28/36 (77%), Positives = 30/36 (83%)
Frame = +1 / -1
Query: 7 PIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMR 114
PIHLHGYD ILAEGF +FDA D+A FNMDDPPMR
Sbjct: 247 PIHLHGYDLCILAEGFAHFDAVTDSAQFNMDDPPMR 140
Score = 60.6 bits (126), Expect(2) = 1e-027
Identities = 26/39 (66%), Positives = 28/39 (71%)
Frame = -2 / +3
Query: 125 PTVFLMGGSSMLKLAVSAXASKLPKPSARM*KS*PWRWM 9
P + L+GGSSML A S ASK PSARM KS*PWRWM
Sbjct: 129 PPMILIGGSSMLNCAESVTASKWANPSARMHKS*PWRWM 245
>gb|CW272516.1|CW272516 104_744_11403454_116_36228_083 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11403454, DNA
sequence
Length = 608
Score = 125 bits (267), Expect(2) = 3e-030
Identities = 43/72 (59%), Positives = 52/72 (72%)
Frame = +1 / -1
Query: 1 NHPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGX 180
+HP HLHGY+F+++ G GNFD D A +N+ DPP RNTVGVP GW IRF ADNPG
Sbjct: 494 SHPFHLHGYNFFVVGRGLGNFDPAKDPAKYNLVDPPERNTVGVPAGGWTAIRFRADNPGV 315
Query: 181 XLMHCHLDVHIT 216
+HCHL+VH T
Sbjct: 314 WFLHCHLEVHTT 279
Score = 96.4 bits (204), Expect(2) = 2e-022
Identities = 42/70 (60%), Positives = 46/70 (65%)
Frame = -2 / +1
Query: 215 VMCTSRWQCMSXXPGLSATKRMTAQPLTGTPTVFLMGGSSMLKLAVSAXASKLPKPSARM 36
V+CTSR QC + PGLSA RM QP GTPTVFL GGS+ L LA S SKLP+P
Sbjct: 280 VVCTSR*QCRNQTPGLSALNRMAVQPPAGTPTVFLSGGSTRLYLAGSLAGSKLPRPLPTT 459
Query: 35 *KS*PWRWMG 6
K *PWRW G
Sbjct: 460 KKL*PWRWNG 489
Score = 29.5 bits (58), Expect(2) = 2e-022
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2 / +1
Query: 290 SXXXASSDCISPTPSSTRNAMARP 219
S +D P PSSTRNA+ RP
Sbjct: 196 SLGGGKTDSSGPLPSSTRNAILRP 267
Score = 26.7 bits (52), Expect(2) = 3e-030
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1 / -1
Query: 220 GLAMAFLVEDGVGEMQSLEAXXXDXXIC* 306
GL +AFLVEDG G +S+ D C*
Sbjct: 266 GLKIAFLVEDGNGPDESVLPPPKDLPEC* 180
>gb|CW410053.1|CW410053 fsbb001f104k04k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f104k04, DNA
sequence
Length = 676
Score = 103 bits (220), Expect(2) = 4e-030
Identities = 36/59 (61%), Positives = 45/59 (76%)
Frame = +1 / +3
Query: 1 NHPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPG 177
+HP+HLHG++F+++ +GFGNFD D A FN+ DP RNTVGVP GW IRF ADNPG
Sbjct: 267 SHPLHLHGFNFFVVGQGFGNFDPTNDPAKFNLVDPVERNTVGVPAGGWVAIRFRADNPG 443
Score = 47.8 bits (98), Expect(2) = 4e-030
Identities = 17/31 (54%), Positives = 24/31 (77%)
Frame = +1 / +3
Query: 160 VADNPGXXLMHCHLDVHITWGLAMAFLVEDG 252
+A + G MHCHL+VH++WGL MA++V DG
Sbjct: 537 LALHAGVWFMHCHLEVHMSWGLKMAWVVLDG 629
>gb|CW388623.1|CW388623 fsbb001f073h10k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f073h10, DNA
sequence
Length = 662
Score = 101 bits (216), Expect(2) = 7e-030
Identities = 35/59 (59%), Positives = 45/59 (76%)
Frame = +1 / -1
Query: 1 NHPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPG 177
+HP+HLHG++F+++ +GFGNFD D A +N+ DP RNTVGVP GW IRF ADNPG
Sbjct: 635 SHPLHLHGFNFFVVGQGFGNFDPAKDPAKYNLVDPVERNTVGVPAAGWVAIRFRADNPG 459
Score = 49.6 bits (102), Expect(2) = 7e-030
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = +1 / -3
Query: 175 GXXLMHCHLDVHITWGLAMAFLVEDG 252
G MHCHL+VH++WGL MA+LV DG
Sbjct: 276 GVWFMHCHLEVHVSWGLKMAWLVLDG 199
>gb|CF433802.1|CF433802 NIT1_30_E10.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_30_E10_A002 3', mRNA sequence
Length = 612
Score = 97.3 bits (206), Expect(2) = 1e-029
Identities = 32/58 (55%), Positives = 44/58 (75%)
Frame = +1 / +3
Query: 1 NHPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNP 174
+HP+HLHG++F+++ +G+GN+D D FN+ DP RNTVGVP GW IRF+ADNP
Sbjct: 51 SHPLHLHGFNFFVVGQGYGNYDPVNDPPKFNLVDPVERNTVGVPAGGWVAIRFLADNP 224
Score = 52.4 bits (108), Expect(2) = 1e-029
Identities = 24/45 (53%), Positives = 26/45 (57%)
Frame = +1 / +1
Query: 175 GXXLMHCHLDVHITWGLAMAFLVEDGVGEMQSLEAXXXDXXIC*L 309
G MHCHL+VH TWGL MA+LV DG Q L D C*L
Sbjct: 226 GVWFMHCHLEVHTTWGLRMAWLVLDGSLPHQKLLPPPSDLPKC*L 360
>gb|CD423127.1|CD423127 SA1_27_D09.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_27_D09_A002 3', mRNA sequence
Length = 552
Score = 129 bits (277), Expect = 2e-029
Identities = 46/84 (54%), Positives = 62/84 (73%)
Frame = +1 / +3
Query: 1 NHPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGX 180
++P+HLHG+D ++LA+G GN+DA D A FN+ +P +NTV VP GWA IRFVADNPG
Sbjct: 18 SNPMHLHGHDMFVLAQGIGNYDAARDEAKFNLVNPARKNTVLVPNLGWAAIRFVADNPGA 197
Query: 181 XLMHCHLDVHITWGLAMAFLVEDG 252
+HCH + H+ G+A F+VEDG
Sbjct: 198 WFIHCHFEFHLAMGMAAVFIVEDG 269
>gb|CX609311.1|CX609311 ANR1_12_A01.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_12_A01_A002 3', mRNA sequence
Length = 538
Score = 129 bits (276), Expect = 2e-029
Identities = 51/96 (53%), Positives = 63/96 (65%)
Frame = +1 / +3
Query: 22 GYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXXLMHCHL 201
G++F+++ +G+GN+D D FN+ DP RNTVGVP GW IRF+ADNPG MHCHL
Sbjct: 3 GFNFFVVGQGYGNYDPVNDPPKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHL 182
Query: 202 DVHITWGLAMAFLVEDGVGEMQSLEAXXXDXXIC*L 309
+VH TWGL MA+LV DG Q L D C*L
Sbjct: 183 EVHTTWGLRMAWLVLDGSLPHQKLLPPPSDLPKC*L 290
>gb|CW090115.1|CW090115 104_435_10949096_116_32613_018 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10949096, DNA
sequence
Length = 753
Score = 104 bits (222), Expect(2) = 7e-029
Identities = 36/59 (61%), Positives = 45/59 (76%)
Frame = +1 / -2
Query: 1 NHPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPG 177
+HP+HLHG+ FY++ G GNFD DTA +N+ DPP++NTV VP GWA IRF ADNPG
Sbjct: 668 SHPMHLHGFSFYVVGRGLGNFDECRDTAGYNLADPPLQNTVAVPKGGWAAIRFRADNPG 492
Score = 42.8 bits (87), Expect(2) = 7e-029
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1 / -1
Query: 169 NPGXXLMHCHLDVHITWGLAMAFLVEDG 252
N G +HCH D H+ WG+ F+V+DG
Sbjct: 423 NSGVWFVHCHFDRHMVWGMDTVFIVKDG 340
>gb|CW090114.1|CW090114 104_435_10949096_114_32612_018 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10949096, DNA
sequence
Length = 710
Score = 104 bits (222), Expect(2) = 7e-029
Identities = 36/59 (61%), Positives = 45/59 (76%)
Frame = +1 / +2
Query: 1 NHPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPG 177
+HP+HLHG+ FY++ G GNFD DTA +N+ DPP++NTV VP GWA IRF ADNPG
Sbjct: 302 SHPMHLHGFSFYVVGRGLGNFDECRDTAGYNLADPPLQNTVAVPKGGWAAIRFRADNPG 478
Score = 42.8 bits (87), Expect(2) = 7e-029
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1 / +1
Query: 169 NPGXXLMHCHLDVHITWGLAMAFLVEDG 252
N G +HCH D H+ WG+ F+V+DG
Sbjct: 547 NSGVWFVHCHFDRHMVWGMDTVFIVKDG 630
>gb|CW260844.1|CW260844 104_727_11229185_148_35199_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11229185, DNA
sequence
Length = 637
Score = 126 bits (269), Expect = 2e-028
Identities = 49/80 (61%), Positives = 58/80 (72%)
Frame = +1 / -3
Query: 64 DAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXXLMHCHLDVHITWGLAMAFLV 243
D D A FN+ DPP RNT+GVPV GWAV+RFVADNPG L+HCH+D H+T GLAMA LV
Sbjct: 635 DPRRDEAKFNLVDPPSRNTIGVPVGGWAVVRFVADNPGVWLVHCHIDAHLTGGLAMALLV 456
Query: 244 EDGVGEMQSLEAXXXDXXIC 303
EDG E+++ A D IC
Sbjct: 455 EDGEAELEATIAPPLDLPIC 396
>gb|CW184226.1|CW184226 104_600_11165041_116_36681_007 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11165041, DNA
sequence
Length = 601
Score = 95.5 bits (202), Expect(2) = 9e-028
Identities = 35/56 (62%), Positives = 44/56 (78%)
Frame = +1 / +2
Query: 85 SFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXXLMHCHLDVHITWGLAMAFLVEDG 252
++N+ +P RNTV VP GWAVIRF A+NPG +MHCHLD H+ +GLAMAF V+DG
Sbjct: 401 NYNLVNPQQRNTVAVPAAGWAVIRFTANNPGVWIMHCHLDAHLPFGLAMAFEVDDG 568
Score = 48.3 bits (99), Expect(2) = 9e-028
Identities = 14/22 (63%), Positives = 21/22 (95%)
Frame = +1 / +2
Query: 1 NHPIHLHGYDFYILAEGFGNFD 66
NHP+HLHG++F++LA+G GNF+
Sbjct: 335 NHPVHLHGFNFFVLAQGTGNFN 400
>gb|CW274119.1|CW274119 104_746_11404259_116_35364_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11404259, DNA
sequence
Length = 648
Score = 123 bits (264), Expect = 1e-027
Identities = 46/101 (45%), Positives = 64/101 (63%)
Frame = +1 / -1
Query: 1 NHPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGX 180
++P+HLHG+DF++LA+G GN+D ++N+ DP ++NTV VP GWA +RFVADNPG
Sbjct: 411 SNPMHLHGHDFFVLAQGHGNYDRARHVRTYNLVDPLLKNTVQVPRLGWAAVRFVADNPGA 232
Query: 181 XLMHCHLDVHITWGLAMAFLVEDGVGEMQSLEAXXXDXXIC 303
MHCH + HI G+A F V +G +L D C
Sbjct: 231 WFMHCHFEFHIAMGMATVFEVANGATPEDTLPPPPSDLPKC 109
>gb|CW476669.1|CW476669 fsbb001f233k04f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f233k04, DNA
sequence
Length = 462
Score = 122 bits (261), Expect = 3e-027
Identities = 47/74 (63%), Positives = 56/74 (75%)
Frame = +1 / -1
Query: 82 ASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXXLMHCHLDVHITWGLAMAFLVEDGVGE 261
A FN+ DPP RNT+GVPV GWAV+RFVADNPG L+HCH+D H+T GLAMA LVEDG E
Sbjct: 462 AKFNLVDPPSRNTIGVPVGGWAVVRFVADNPGVWLVHCHIDAHLTGGLAMALLVEDGEAE 283
Query: 262 MQSLEAXXXDXXIC 303
+++ A D IC
Sbjct: 282 LEATIAPPLDLPIC 241
>gb|CX607180.1|CX607180 ANR1_7_D07.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_7_D07_A002 3', mRNA sequence
Length = 789
Score = 90.9 bits (192), Expect(2) = 3e-027
Identities = 33/57 (57%), Positives = 41/57 (71%)
Frame = +1 / +2
Query: 82 ASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXXLMHCHLDVHITWGLAMAFLVEDG 252
+ +N+ +P +RNT+ VP GWAVIRF ADNPG MHCH D+H+ GLAM F V DG
Sbjct: 398 SKYNLVNPQVRNTIAVPAGGWAVIRFTADNPGMWFMHCHFDMHLPLGLAMVFEVLDG 568
Score = 51.0 bits (105), Expect(2) = 3e-027
Identities = 16/23 (69%), Positives = 21/23 (91%)
Frame = +1 / +2
Query: 1 NHPIHLHGYDFYILAEGFGNFDA 69
NHPIHLHG++F++LA+G G FDA
Sbjct: 320 NHPIHLHGFNFFVLAQGLGRFDA 388
>gb|BG357578.1|BG357578 OV2_31_F04.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 579
Score = 121 bits (259), Expect = 5e-027
Identities = 40/84 (47%), Positives = 57/84 (67%)
Frame = +1 / +3
Query: 1 NHPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGX 180
+HP+HLHG+ F+++ GFGNFD D +N+ DPP ++TV VP GW +RF A NPG
Sbjct: 126 SHPMHLHGFSFFVVGRGFGNFDKDKDPTMYNLVDPPYQSTVSVPSGGWVAMRFRAANPGV 305
Query: 181 XLMHCHLDVHITWGLAMAFLVEDG 252
MHCH + H+ WG+ F+V++G
Sbjct: 306 WFMHCHFNRHMMWGMDTVFIVKNG 377
>gb|CW329817.1|CW329817 104_826_11480043_148_35996_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11480043, DNA
sequence
Length = 556
Score = 120 bits (257), Expect = 9e-027
Identities = 45/59 (76%), Positives = 48/59 (81%)
Frame = +1 / -1
Query: 1 NHPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPG 177
NHPIH+HGYDF+ILAEGFGNFD D FN DPP RNTV VPVN WAVI+FVADNPG
Sbjct: 181 NHPIHIHGYDFFILAEGFGNFDPKKDVEKFNYVDPPQRNTVAVPVNDWAVIQFVADNPG 5
>gb|CW124814.1|CW124814 104_504_11111989_148_34703_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11111989, DNA
sequence
Length = 493
Score = 119 bits (255), Expect = 2e-026
Identities = 42/78 (53%), Positives = 54/78 (69%)
Frame = +1 / +1
Query: 4 HPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXX 183
HP HLHG+DF++LA G G FD DTA FN+ DP M+NTV + GW +RFVADNPG
Sbjct: 16 HPWHLHGHDFWVLAYGDGKFDPETDTARFNLRDPVMKNTVALHPKGWTAVRFVADNPGVW 195
Query: 184 LMHCHLDVHITWGLAMAF 237
L HCH++ H+ G+ + F
Sbjct: 196 LFHCHIEAHVYMGMGVVF 249
>gb|CW403686.1|CW403686 fsbb001f095i11f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f095i11, DNA
sequence
Length = 635
Score = 119 bits (255), Expect = 2e-026
Identities = 42/78 (53%), Positives = 54/78 (69%)
Frame = +1 / -3
Query: 4 HPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXX 183
HP HLHG+DF++LA G G FD DTA FN+ DP M+NTV + GW +RFVADNPG
Sbjct: 471 HPWHLHGHDFWVLAYGDGKFDPETDTARFNLRDPVMKNTVALHPKGWTAVRFVADNPGVW 292
Query: 184 LMHCHLDVHITWGLAMAF 237
L HCH++ H+ G+ + F
Sbjct: 291 LFHCHIEAHVYMGMGVVF 238
>gb|CD427782.1|CD427782 ETH1_34_A07.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_34_A07_A002 3', mRNA sequence
Length = 665
Score = 119 bits (255), Expect = 2e-026
Identities = 42/78 (53%), Positives = 54/78 (69%)
Frame = +1 / +2
Query: 4 HPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXX 183
HP HLHG+DF++LA G G FD DTA FN+ DP M+NTV + GW +RFVADNPG
Sbjct: 146 HPWHLHGHDFWVLAYGDGKFDPETDTARFNLRDPVMKNTVALHPKGWTAVRFVADNPGVW 325
Query: 184 LMHCHLDVHITWGLAMAF 237
L HCH++ H+ G+ + F
Sbjct: 326 LFHCHIEAHVYMGMGVVF 379
>gb|CF430958.1|CF430958 NIT1_4_D02.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_4_D02_A002 3', mRNA sequence
Length = 524
Score = 118 bits (253), Expect = 3e-026
Identities = 49/88 (55%), Positives = 56/88 (63%)
Frame = +1 / +3
Query: 46 EGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPGXXLMHCHLDVHITWGL 225
+G+GN+D D FN+ DP RNTVGVP GW IRF+ADNPG MHCHL+VH TWGL
Sbjct: 6 QGYGNYDPVNDPPKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEVHTTWGL 185
Query: 226 AMAFLVEDGVGEMQSLEAXXXDXXIC*L 309
MA+LV DG Q L D C*L
Sbjct: 186 RMAWLVLDGSLPHQKLLPPPSDLPKC*L 269
>gb|CW135157.1|CW135157 104_519_11117696_148_34827_022 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11117696, DNA
sequence
Length = 648
Score = 99.1 bits (210), Expect(2) = 4e-026
Identities = 35/59 (59%), Positives = 43/59 (72%)
Frame = +1 / +3
Query: 1 NHPIHLHGYDFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPG 177
+HP+HLHG+ FY++ GFGNFD D A +N+ DPP +NTV VP GWA IRF A NPG
Sbjct: 27 SHPMHLHGFSFYVVGRGFGNFDKDKDLAMYNLVDPPYQNTVTVPAGGWAAIRFRAANPG 203
Score = 39.1 bits (79), Expect(2) = 4e-026
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1 / +3
Query: 175 GXXLMHCHLDVHITWGLAMAFLVEDG 252
G MHCH D H WG+ F+V++G
Sbjct: 303 GVWFMHCHFDRHTVWGMDTVFIVKNG 380
>gb|CW221998.1|CW221998 104_657_11202146_148_37449_009 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11202146, DNA
sequence
Length = 646
Score = 82.2 bits (173), Expect(2) = 2e-024
Identities = 30/50 (60%), Positives = 36/50 (72%)
Frame = +1 / +1
Query: 28 DFYILAEGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPG 177
+F+++ +GFGNFD D A FN+ DP RNTVGVP GW IRF ADNPG
Sbjct: 1 NFFVVGQGFGNFDPTNDPAKFNLVDPVERNTVGVPAGGWVAIRFRADNPG 150
Score = 50.6 bits (104), Expect(2) = 2e-024
Identities = 23/49 (46%), Positives = 29/49 (59%)
Frame = +1 / +1
Query: 160 VADNPGXXLMHCHLDVHITWGLAMAFLVEDGVGEMQSLEAXXXDXXIC* 306
+A + G MHCHL+VH++WGL MA+LV DG Q L D C*
Sbjct: 244 LALHAGVWFMHCHLEVHMSWGLKMAWLVLDGSLPNQKLPPPPLDLPQC* 390
>gb|CF429359.1|CF429359 PH1_21_G06.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_21_G06_A002 3', mRNA sequence
Length = 542
Score = 72.1 bits (151), Expect(2) = 2e-023
Identities = 26/44 (59%), Positives = 31/44 (70%)
Frame = +1 / +3
Query: 46 EGFGNFDAXADTASFNMDDPPMRNTVGVPVNGWAVIRFVADNPG 177
+G+GN+D D FN+ DP RNTVGVP GW IRF+ADNPG
Sbjct: 6 QGYGNYDPVNDPPKFNLVDPVERNTVGVPAGGWVAIRFLADNPG 137
Score = 56.1 bits (116), Expect(2) = 2e-023
Identities = 25/46 (54%), Positives = 27/46 (58%)
Frame = +1 / +1
Query: 172 PGXXLMHCHLDVHITWGLAMAFLVEDGVGEMQSLEAXXXDXXIC*L 309
PG MHCHL+VH TWGL MA+LV DG Q L D C*L
Sbjct: 133 PGYVFMHCHLEVHTTWGLRMAWLVLDGSLPHQKLLPPPSDLPKC*L 270
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 336,248,461
Number of Sequences: 832831
Number of extensions: 4217640
Number of successful extensions: 197193
Number of sequences better than 1.0e-020: 74
length of database: 163,786,556
effective HSP length: 52
effective length of database: 120,479,344
effective search space used: 9879306208
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)