TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAN24c09.yg.2.1
(425 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW140470.1|CW140470 104_531_11135797_116_34926_063 Sorgh... 193 3e-056
gb|CX618063.1|CX618063 GABR1_37_B05.g1_A002 GA- or brassino... 199 1e-053
gb|BF480979.1|BF480979 FM1_15_G12.g1_A003 Floral-Induced Me... 188 5e-047
gb|CW148394.1|CW148394 104_547_11141932_116_35015_016 Sorgh... 158 2e-044
gb|CW430835.1|CW430835 fsbb001f144l18k0 Sorghum methylation... 155 4e-042
gb|CW296110.1|CW296110 104_777_11461315_148_35624_068 Sorgh... 155 6e-042
gb|CW224629.1|CW224629 104_662_11203928_148_37201_032 Sorgh... 155 1e-040
gb|CW315969.1|CW315969 104_807_11472644_148_35845_076 Sorgh... 141 2e-038
gb|CW235189.1|CW235189 104_690_11214849_148_37413_041 Sorgh... 141 2e-038
gb|CN132882.1|CN132882 OX1_8_F12.g1_A002 Oxidatively-stress... 157 9e-038
gb|CW164547.1|CW164547 104_572_11152044_148_36463_038 Sorgh... 155 2e-037
gb|CW031320.1|CW031320 104_259_10500738_116_30398 Sorghum m... 141 3e-037
gb|CW148395.1|CW148395 104_547_11141932_148_35011_016 Sorgh... 154 9e-037
gb|BG101839.1|BG101839 RHIZ2_23_A10.g1_A003 Rhizome2 (RHIZ2... 153 1e-036
gb|CW496561.1|CW496561 fsbb001f288o02f0 Sorghum methylation... 137 2e-036
gb|BG103131.1|BG103131 RHIZ2_18_E07.g1_A003 Rhizome2 (RHIZ2... 149 2e-035
gb|CW481819.1|CW481819 fsbb001f241j14k0 Sorghum methylation... 148 5e-035
gb|AW744882.1|AW744882 LG1_384_E04.b1_A002 Light Grown 1 (L... 147 7e-035
gb|BE918058.1|BE918058 OV1_1_D06.b1_A002 Ovary 1 (OV1) Sorg... 147 7e-035
gb|BE918108.1|BE918108 OV1_2_A10.b1_A002 Ovary 1 (OV1) Sorg... 147 7e-035
gb|BG948058.1|BG948058 IP1_8_G12.b1_A002 Immature pannicle ... 147 7e-035
gb|BI074863.1|BI074863 IP1_16_A11.b1_A002 Immature pannicle... 147 7e-035
gb|CF433027.1|CF433027 NIT1_20_E12.g1_A002 Nitrogen-deficie... 136 8e-035
gb|CW213542.1|CW213542 104_645_11191609_148_37039_013 Sorgh... 147 1e-034
gb|CD423905.1|CD423905 SA1_2_G12.b1_A002 Salicylic acid-tre... 145 4e-034
gb|CL148485.1|CL148485 104_328_10593130_116_31783_254 Sorgh... 144 5e-034
gb|CW385345.1|CW385345 fsbb001f068m13k0 Sorghum methylation... 144 5e-034
gb|BI245956.1|BI245956 IP1_65_G03.b1_A002 Immature pannicle... 143 1e-033
gb|CL167974.1|CL167974 104_365_10810478_114_31804_158 Sorgh... 141 5e-033
gb|BG240580.1|BG240580 OV1_31_F08.b1_A002 Ovary 1 (OV1) Sor... 142 6e-033
gb|CF430024.1|CF430024 PH1_25_C04.g1_A002 Phosphorous-defic... 140 1e-032
gb|CF433703.1|CF433703 NIT1_28_F11.g1_A002 Nitrogen-deficie... 139 2e-032
gb|BI141114.1|BI141114 IP1_43_D01.b1_A002 Immature pannicle... 137 1e-031
gb|BE357339.1|BE357339 DG1_148_D12.g1_A002 Dark Grown 1 (DG... 136 2e-031
gb|CW315001.1|CW315001 104_805_11472128_148_35822_018 Sorgh... 134 7e-031
gb|BG050984.1|BG050984 FM1_55_A02.b1_A003 Floral-Induced Me... 133 1e-030
gb|BE362654.1|BE362654 DG1_88_F12.b1_A002 Dark Grown 1 (DG1... 129 2e-029
gb|CN129247.1|CN129247 RHOH1_34_G09.b3_A002 Acid- and alkal... 126 2e-028
gb|CW235188.1|CW235188 104_690_11214849_116_37409_041 Sorgh... 125 3e-028
gb|CL148486.1|CL148486 104_328_10593130_148_31782_254 Sorgh... 119 3e-026
gb|CN127278.1|CN127278 RHOH1_22_C03.b1_A002 Acid- and alkal... 118 4e-026
gb|CN128917.1|CN128917 RHOH1_32_H10.b1_A002 Acid- and alkal... 118 4e-026
gb|BE357401.1|BE357401 DG1_15_D04.b2_A002 Dark Grown 1 (DG1... 109 3e-023
gb|CW039030.1|CW039030 104_271_10505258_114_30387 Sorghum m... 100 9e-022
gb|BG048793.1|BG048793 OV1_23_B06.b1_A002 Ovary 1 (OV1) Sor... 101 5e-021
gb|CW235146.1|CW235146 104_690_11214827_116_37407_042 Sorgh... 100 9e-021
gb|CW235147.1|CW235147 104_690_11214827_148_37411_042 Sorgh... 100 9e-021
gb|CW411521.1|CW411521 fsbb001f106l17k0 Sorghum methylation... 100 9e-021
>gb|CW140470.1|CW140470 104_531_11135797_116_34926_063 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11135797, DNA
sequence
Length = 540
Score = 193 bits (417), Expect(2) = 3e-056
Identities = 76/90 (84%), Positives = 82/90 (91%)
Frame = +1 / +2
Query: 91 KL*FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQ 270
+L*+C+LWN * LC+LFHLL LNNV S+WFMSLFICIFATSIL M W+GVGIDDWWRNEQ
Sbjct: 266 QL*YCMLWNA*ILCALFHLLHLNNVTSMWFMSLFICIFATSILQMTWTGVGIDDWWRNEQ 445
Query: 271 FWVIGGVSSHLFAVFQGLLXVIAGVDTSXT 360
FWVIGGVSSHLFAVFQGLL VIAGVDTS T
Sbjct: 446 FWVIGGVSSHLFAVFQGLLKVIAGVDTSFT 535
Score = 178 bits (384), Expect(2) = 2e-051
Identities = 74/91 (81%), Positives = 78/91 (85%)
Frame = -1 / -1
Query: 365 VXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQIKS 186
V V LVSTPAMT RSP NTAKRCEDTPPMTQNCSFLHQSSIPTP+H+I MLVAKMQIKS
Sbjct: 540 VTVKLVSTPAMTLRSPWNTAKRCEDTPPMTQNCSFLHQSSIPTPVHVICSMLVAKMQIKS 361
Query: 185 DMNHRLATLFSCSR*NSEHKVQTFHNKQNYS 93
DMNH L TLF CSR*NS HK+Q FHN Q Y+
Sbjct: 360 DMNHMLVTLFKCSR*NSAHKIQAFHNIQYYN 268
Score = 171 bits (367), Expect(2) = 2e-049
Identities = 71/90 (78%), Positives = 75/90 (83%)
Frame = +3 / +1
Query: 96 IVLFVVECLNLMFTVSSAAAEQCCQPVVHVTFYLHFCYKHPXNEMEWCWD**LVEE*AVL 275
IVL+VVECLNLM TVSSAA E C Q VVHVT YLHFCYKH N+M+WCW+**LVEE*AVL
Sbjct: 271 IVLYVVECLNLMCTVSSAALE*CYQHVVHVTLYLHFCYKHTTNDMDWCWN**LVEE*AVL 450
Query: 276 GHWRCVLAPLRCVSGTSXGHSWC*YKLHXD 365
GHWRCVLAPL CV TS GHS *YKLH D
Sbjct: 451 GHWRCVLAPLCCVPRTSQGHSRS*YKLHCD 540
Score = 124 bits (266), Expect(2) = 8e-035
Identities = 58/89 (65%), Positives = 65/89 (73%)
Frame = -3 / -3
Query: 360 SXACINTSYDXEKSLKHSEEVRGHTSNDPELLXXXXXXXXXXXPSHXXDACSKNADKK*H 181
S ACIN+ YD EKSL+HS+EVRGHTSNDPELL P H ACSKNA+K+*H
Sbjct: 535 SEACINSCYDLEKSLEHSKEVRGHTSNDPELLIPPPIINSNTSPCHL*YACSKNANKE*H 356
Query: 180 EPQAGNIVQLQQMKQ*T*GSDIPQQTKL* 94
EP AGNI+Q+QQMKQ T* S IPQ T L*
Sbjct: 355 EPHAGNIIQVQQMKQCT*DSGIPQHTIL* 269
Score = 110 bits (234), Expect(2) = 1e-028
Identities = 53/86 (61%), Positives = 59/86 (68%)
Frame = -2 / -2
Query: 349 YQHQL*PXEVPETQRRGARTHLQ*PRTAXXXXXXXXXXXXXXXXGCL*QKCR*KVT*TTG 170
YQ L*P EV TQ+RGARTHLQ*PRTA CL*QKC+*+VT*TT
Sbjct: 524 YQLLL*P*EVLGTQQRGARTHLQ*PRTAHSSTNHQFQHQSMSFVVCL*QKCK*RVT*TTC 345
Query: 169 WQHCSAAADETVNIRFRHSTTNKTIV 92
W H S+AADETV+IRFRHSTT TI+
Sbjct: 344 W*HYSSAADETVHIRFRHSTTYNTII 267
Score = 91.3 bits (193), Expect(3) = 3e-030
Identities = 34/41 (82%), Positives = 35/41 (85%)
Frame = +2 / +3
Query: 92 NYSFVCCGMSEPYVHCFICCS*TMLPACGSCHFLSAFLLQA 214
NYS VCCGM E YVHCFICC+* MLPACGSCH L AFLLQA
Sbjct: 267 NYSIVCCGMPESYVHCFICCT*IMLPACGSCHSLFAFLLQA 389
Score = 45.1 bits (92), Expect(2) = 3e-056
Identities = 18/20 (90%), Positives = 18/20 (90%)
Frame = +1 / +3
Query: 1 TLPAICLLTGKFITPEVKLN 60
TLPAICLLTGKFITPEV N
Sbjct: 201 TLPAICLLTGKFITPEVNKN 260
Score = 44.6 bits (91), Expect(2) = 2e-049
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = +3 / +2
Query: 3 IACHLFIDGEIYHSRGK 53
IACHLFIDG+IYHSRGK
Sbjct: 203 IACHLFIDGKIYHSRGK 253
Score = 43.7 bits (89), Expect(2) = 2e-051
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = -1 / -3
Query: 53 FTSGVINFPVNKQMAGN 3
FTSGVINFPVNKQMAGN
Sbjct: 253 FTSGVINFPVNKQMAGN 203
Score = 42.8 bits (87), Expect(3) = 3e-030
Identities = 19/26 (73%), Positives = 20/26 (76%)
Frame = +2 / +3
Query: 284 EVCPRTSSLCFRDFSXS*LVLIQAXL 361
EVCPRTS LC +DFS S* LIQA L
Sbjct: 459 EVCPRTSLLCSKDFSRS*QELIQASL 536
Score = 42.3 bits (86), Expect(2) = 8e-035
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = -3 / -2
Query: 54 LYLWSDKFPRQ*TDGRQC 1
+YLWSDKF RQ*T+GRQC
Sbjct: 254 IYLWSDKFSRQ*TNGRQC 201
Score = 35.9 bits (72), Expect(2) = 1e-028
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = -2 / -1
Query: 52 LPLE**ISPSINRWQAM 2
LPLE**I PSIN+WQAM
Sbjct: 252 LPLE**IFPSINKWQAM 202
Score = 35.0 bits (70), Expect(3) = 3e-030
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = +2 / +1
Query: 2 HCLPSVY*RGNLSLQR* 52
HCLP VY*R NLSLQR*
Sbjct: 202 HCLPFVY*RENLSLQR* 252
>gb|CX618063.1|CX618063 GABR1_37_B05.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_37_B05_A002 5', mRNA sequence
Length = 728
Score = 199 bits (430), Expect = 1e-050
Identities = 83/102 (81%), Positives = 87/102 (85%)
Frame = +1 / +1
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L + L F +LNNVASLWFMSLFICIFATSIL MRWSGVGIDDWWRNEQFWV
Sbjct: 205 YCTLPAICLLTGKFITPELNNVASLWFMSLFICIFATSILEMRWSGVGIDDWWRNEQFWV 384
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDDEFSELY 405
IGGVSSHLFAVFQGLL VIAGVDTS T TSKGGDD+EFSELY
Sbjct: 385 IGGVSSHLFAVFQGLLKVIAGVDTSFTVTSKGGDDEEFSELY 510
Score = 188 bits (405), Expect(2) = 1e-053
Identities = 73/83 (87%), Positives = 75/83 (90%)
Frame = +3 / +3
Query: 156 EQCCQPVVHVTFYLHFCYKHPXNEMEWCWD**LVEE*AVLGHWRCVLAPLRCVSGTSXGH 335
E CCQPVVHVT YLHFCYKHP NEMEWCW+**LVEE*AVLGHWRCVLAPL CV GTS GH
Sbjct: 261 E*CCQPVVHVTLYLHFCYKHPRNEMEWCWN**LVEE*AVLGHWRCVLAPLCCVPGTSQGH 440
Query: 336 SWC*YKLHXDIKGWR**RILRAV 404
SWC*YKLH DIKGWR** +LRAV
Sbjct: 441 SWC*YKLHCDIKGWR**GVLRAV 509
Score = 160 bits (345), Expect(2) = 2e-045
Identities = 69/84 (82%), Positives = 70/84 (83%)
Frame = -1 / -1
Query: 404 YXXXXXXXXXPFDVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHL 225
Y PFDV V LVSTPAMT RSP NTAKRCEDTPPMTQNCSFLHQSSIPTPLHL
Sbjct: 509 YSSENSSSSPPFDVTVKLVSTPAMTLRSPWNTAKRCEDTPPMTQNCSFLHQSSIPTPLHL 330
Query: 224 IXRMLVAKMQIKSDMNHRLATLFS 153
I RMLVAKMQIKSDMNHRLATLF+
Sbjct: 329 ISRMLVAKMQIKSDMNHRLATLFN 258
Score = 137 bits (294), Expect(2) = 3e-038
Identities = 61/85 (71%), Positives = 68/85 (80%)
Frame = -3 / -3
Query: 405 VQL*EFVIISTL*CXSXACINTSYDXEKSLKHSEEVRGHTSNDPELLXXXXXXXXXXXPS 226
+QL*E +IISTL*C S ACINTSYD EKSL+HS+EVRGHTSNDPELL PS
Sbjct: 510 IQL*ELLIISTL*CHSEACINTSYDLEKSLEHSKEVRGHTSNDPELLIPPPIINSNTTPS 331
Query: 225 HXXDACSKNADKK*HEPQAGNIVQL 151
H DACSKNA+K+*HEPQAGNI+QL
Sbjct: 330 HF*DACSKNANKE*HEPQAGNIIQL 256
Score = 112 bits (240), Expect(2) = 7e-031
Identities = 55/89 (61%), Positives = 56/89 (62%)
Frame = +2 / +2
Query: 152 S*TMLPACGSCHFLSAFLLQASXX*DXXXXXXXXXXXXXXXXXXEVCPRTSSLCFRDFSX 331
S* MLPACGSCH L AFLLQAS *D EVCPRTS LC RDFS
Sbjct: 257 S*IMLPACGSCHSLFAFLLQAS*K*DGVVLELMIGGGMSSSGSLEVCPRTSLLCSRDFSR 436
Query: 332 S*LVLIQAXLXHQRVEMMTNSQSCTXXGG 418
S*LVLIQA L HQRVEMM +SQSC G
Sbjct: 437 S*LVLIQASL*HQRVEMMRSSQSCIHSNG 523
Score = 97.7 bits (207), Expect(2) = 4e-024
Identities = 43/65 (66%), Positives = 46/65 (70%)
Frame = -2 / -2
Query: 349 YQHQL*PXEVPETQRRGARTHLQ*PRTAXXXXXXXXXXXXXXXXGCL*QKCR*KVT*TTG 170
YQHQL*P EVP TQ+RGARTHLQ*PRTA GCL*QKC+*+VT*TTG
Sbjct: 454 YQHQL*P*EVPGTQQRGARTHLQ*PRTAHSSTNHQFQHHSISFLGCL*QKCK*RVT*TTG 275
Query: 169 WQHCS 155
WQH S
Sbjct: 274 WQHYS 260
Score = 42.3 bits (86), Expect(2) = 2e-045
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = -3 / -3
Query: 54 LYLWSDKFPRQ*TDGRQC 1
+ LWSDKFPRQ*T+GRQC
Sbjct: 264 IQLWSDKFPRQ*TNGRQC 211
Score = 41.8 bits (85), Expect(2) = 1e-053
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = +1 / +1
Query: 1 TLPAICLLTGKFITPEV 51
TLPAICLLTGKFITPE+
Sbjct: 211 TLPAICLLTGKFITPEL 261
Score = 41.4 bits (84), Expect(2) = 3e-038
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = -1 / -1
Query: 53 FTSGVINFPVNKQMAGN 3
F SGVINFPVNKQMAGN
Sbjct: 263 FNSGVINFPVNKQMAGN 213
Score = 41.4 bits (84), Expect(2) = 7e-031
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +3 / +3
Query: 3 IACHLFIDGEIYHSR 47
IACHLFIDGEIYHSR
Sbjct: 213 IACHLFIDGEIYHSR 257
Score = 33.6 bits (67), Expect(2) = 4e-024
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = -2 / -2
Query: 46 LE**ISPSINRWQAM 2
LE**ISPSIN+WQAM
Sbjct: 256 LE**ISPSINKWQAM 212
>gb|BF480979.1|BF480979 FM1_15_G12.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 721
Score = 188 bits (404), Expect = 5e-047
Identities = 77/85 (90%), Positives = 79/85 (92%)
Frame = +1 / +3
Query: 151 QLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQGLLX 330
+LNNVAS FMSLFICIFATSIL MRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQGLL
Sbjct: 9 ELNNVASSGFMSLFICIFATSILEMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQGLLK 188
Query: 331 VIAGVDTSXTXTSKGGDDDEFSELY 405
VIAGVDTS T TSKGGDD+EFSELY
Sbjct: 189 VIAGVDTSFTVTSKGGDDEEFSELY 263
Score = 145 bits (312), Expect = 3e-034
Identities = 64/84 (76%), Positives = 65/84 (77%)
Frame = -1 / -1
Query: 404 YXXXXXXXXXPFDVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHL 225
Y P DV V LVSTPAMT RSP NTAKRCEDTPPMTQNCSFLHQSS+PTPLHL
Sbjct: 262 YSSENSSSSPPLDVTVKLVSTPAMTLRSPWNTAKRCEDTPPMTQNCSFLHQSSMPTPLHL 83
Query: 224 IXRMLVAKMQIKSDMNHRLATLFS 153
I RMLVAKMQIKSDM LATL S
Sbjct: 82 ISRMLVAKMQIKSDMKPELATLLS 11
Score = 144 bits (310), Expect = 5e-034
Identities = 58/86 (67%), Positives = 64/86 (74%)
Frame = +3 / +2
Query: 147 AAAEQCCQPVVHVTFYLHFCYKHPXNEMEWCWD**LVEE*AVLGHWRCVLAPLRCVSGTS 326
A A QCCQ HVTFYLHFCY+HP NEMEWC *LVE+*AVLGHWRCV L CV T
Sbjct: 5 ARA*QCCQLWFHVTFYLHFCYEHPGNEMEWCRHR*LVEK*AVLGHWRCVFTSLCCVPRTP 184
Query: 327 XGHSWC*YKLHXDIKGWR**RILRAV 404
GHSWC ++LH DI+GWR +LRAV
Sbjct: 185 QGHSWCRHELHCDIQGWRRRGVLRAV 262
Score = 106 bits (226), Expect = 2e-022
Identities = 50/85 (58%), Positives = 61/85 (71%)
Frame = -3 / -3
Query: 405 VQL*EFVIISTL*CXSXACINTSYDXEKSLKHSEEVRGHTSNDPELLXXXXXXXXXXXPS 226
VQL*E +++STL C S A + TSYD E+SL+HS+E+ HTSNDP+LL PS
Sbjct: 263 VQL*ELLVVSTLGCHSEARVYTSYDLEESLEHSKEM*RHTSNDPKLLISPPIIDAYTTPS 84
Query: 225 HXXDACSKNADKK*HEPQAGNIVQL 151
H DA SKNADKK*HE +AGNIV+L
Sbjct: 83 HFQDARSKNADKK*HETRAGNIVKL 9
>gb|CW148394.1|CW148394 104_547_11141932_116_35015_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11141932, DNA
sequence
Length = 668
Score = 158 bits (339), Expect(2) = 2e-044
Identities = 60/86 (69%), Positives = 73/86 (84%)
Frame = +1 / +2
Query: 130 CSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLFA 309
C F +Q++N+ S+WF+SLFI IFAT IL MRWSGVGID+WWRNEQFWVIGG+S+HLFA
Sbjct: 362 CFYFS*MQISNLESVWFISLFISIFATGILEMRWSGVGIDEWWRNEQFWVIGGISAHLFA 541
Query: 310 VFQGLLXVIAGVDTSXTXTSKGGDDD 387
VFQGLL V+AG+DTS T TSK D++
Sbjct: 542 VFQGLLKVLAGIDTSFTVTSKATDEE 619
Score = 108 bits (230), Expect(2) = 1e-027
Identities = 44/73 (60%), Positives = 54/73 (73%)
Frame = -1 / -3
Query: 368 DVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQIK 189
+V V LVS PA T R P TA +C + PP+TQNCSFLH SS+PTPLHLI R+ VAK++IK
Sbjct: 600 EVTVKLVSIPASTFRRPWKTANKCAEIPPITQNCSFLHHSSMPTPLHLISRIPVAKIEIK 421
Query: 188 SDMNHRLATLFSC 150
SD+N L+ L C
Sbjct: 420 SDINQTLSRLLIC 382
Score = 41.4 bits (84), Expect(2) = 2e-044
Identities = 20/36 (55%), Positives = 24/36 (66%)
Frame = +1 / +1
Query: 4 LPAICLLTGKFITPEVKLNQL*FCCLRKTKL*FCLL 111
LPA+CLLTGKFI P+VK + + R K *F LL
Sbjct: 259 LPAVCLLTGKFIIPKVKTHTFMYFAGRIAKN*F*LL 366
Score = 35.0 bits (70), Expect(2) = 1e-027
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -1 / -1
Query: 110 NKQNYSFVFLKQQNYS*LSFTSGVINFPVNKQMAGN 3
+ QN F L + + FT G++NFPV +Q AGN
Sbjct: 365 SSQNQFFAILPAKYINVWVFTFGMMNFPVRRQTAGN 258
>gb|CW430835.1|CW430835 fsbb001f144l18k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f144l18, DNA
sequence
Length = 552
Score = 155 bits (334), Expect(2) = 4e-042
Identities = 57/86 (66%), Positives = 73/86 (84%)
Frame = +1 / +2
Query: 151 QLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQGLLX 330
QL+N A++WF+ LF+ I TS+L +RWSG+GI+DWWRNEQFWVIGGVS+HLFAVFQG+L
Sbjct: 206 QLSNAATIWFLGLFMSIILTSVLELRWSGIGIEDWWRNEQFWVIGGVSAHLFAVFQGILK 385
Query: 331 VIAGVDTSXTXTSKGGDDDEFSELYL 408
+IAG+DT+ T T+K DD EF ELY+
Sbjct: 386 MIAGLDTNFTVTAKATDDAEFGELYV 463
Score = 94.1 bits (199), Expect(2) = 5e-022
Identities = 43/84 (51%), Positives = 47/84 (55%)
Frame = -1 / -1
Query: 404 YXXXXXXXXXPFDVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHL 225
Y F V V LVS+PA+ R P NTA R DTPPMTQNCS HQSSIP PLH
Sbjct: 459 YSSPNSASSVAFAVTVKLVSSPAIILRIPWNTANRWADTPPMTQNCSLRHQSSIPMPLHR 280
Query: 224 IXRMLVAKMQIKSDMNHRLATLFS 153
LV M +K NH +A L S
Sbjct: 279 SSNTLVKMMDMKRPRNHMVAALDS 208
Score = 35.4 bits (71), Expect(2) = 4e-042
Identities = 14/16 (87%), Positives = 14/16 (87%)
Frame = +1 / +3
Query: 4 LPAICLLTGKFITPEV 51
LPAICLLTGKFI P V
Sbjct: 84 LPAICLLTGKFIIPTV 131
Score = 29.9 bits (59), Expect(2) = 5e-022
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = -1 / -3
Query: 50 TSGVINFPVNKQMAG 6
T G++NFPV++QMAG
Sbjct: 130 TVGIMNFPVSRQMAG 86
>gb|CW296110.1|CW296110 104_777_11461315_148_35624_068 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11461315, DNA
sequence
Length = 684
Score = 155 bits (334), Expect(2) = 6e-042
Identities = 57/86 (66%), Positives = 73/86 (84%)
Frame = +1 / -2
Query: 151 QLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQGLLX 330
QL+N A++WF+ LF+ I TS+L +RWSG+GI+DWWRNEQFWVIGGVS+HLFAVFQG+L
Sbjct: 266 QLSNAATIWFLGLFMSIILTSVLELRWSGIGIEDWWRNEQFWVIGGVSAHLFAVFQGILK 87
Query: 331 VIAGVDTSXTXTSKGGDDDEFSELYL 408
+IAG+DT+ T T+K DD EF ELY+
Sbjct: 86 MIAGLDTNFTVTAKATDDAEFGELYV 9
Score = 94.1 bits (199), Expect(2) = 7e-022
Identities = 43/84 (51%), Positives = 47/84 (55%)
Frame = -1 / +1
Query: 404 YXXXXXXXXXPFDVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHL 225
Y F V V LVS+PA+ R P NTA R DTPPMTQNCS HQSSIP PLH
Sbjct: 13 YSSPNSASSVAFAVTVKLVSSPAIILRIPWNTANRWADTPPMTQNCSLRHQSSIPMPLHR 192
Query: 224 IXRMLVAKMQIKSDMNHRLATLFS 153
LV M +K NH +A L S
Sbjct: 193 SSNTLVKMMDMKRPRNHMVAALDS 264
Score = 35.4 bits (71), Expect(2) = 6e-042
Identities = 14/16 (87%), Positives = 14/16 (87%)
Frame = +1 / -3
Query: 4 LPAICLLTGKFITPEV 51
LPAICLLTGKFI P V
Sbjct: 388 LPAICLLTGKFIIPTV 341
Score = 29.9 bits (59), Expect(2) = 7e-022
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = -1 / +3
Query: 50 TSGVINFPVNKQMAG 6
T G++NFPV++QMAG
Sbjct: 342 TVGIMNFPVSRQMAG 386
>gb|CW224629.1|CW224629 104_662_11203928_148_37201_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11203928, DNA
sequence
Length = 714
Score = 155 bits (334), Expect(2) = 1e-040
Identities = 57/86 (66%), Positives = 73/86 (84%)
Frame = +1 / -3
Query: 151 QLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQGLLX 330
QL+N A++WF+ LF+ I TS+L +RWSG+GI+DWWRNEQFWVIGGVS+HLFAVFQG+L
Sbjct: 523 QLSNAATIWFLGLFMSIILTSVLELRWSGIGIEDWWRNEQFWVIGGVSAHLFAVFQGILK 344
Query: 331 VIAGVDTSXTXTSKGGDDDEFSELYL 408
+IAG+DT+ T T+K DD EF ELY+
Sbjct: 343 MIAGLDTNFTVTAKATDDAEFGELYV 266
Score = 94.1 bits (199), Expect(2) = 6e-021
Identities = 43/84 (51%), Positives = 47/84 (55%)
Frame = -1 / +3
Query: 404 YXXXXXXXXXPFDVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHL 225
Y F V V LVS+PA+ R P NTA R DTPPMTQNCS HQSSIP PLH
Sbjct: 270 YSSPNSASSVAFAVTVKLVSSPAIILRIPWNTANRWADTPPMTQNCSLRHQSSIPMPLHR 449
Query: 224 IXRMLVAKMQIKSDMNHRLATLFS 153
LV M +K NH +A L S
Sbjct: 450 SSNTLVKMMDMKRPRNHMVAALDS 521
Score = 31.3 bits (62), Expect(2) = 1e-040
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +1 / -1
Query: 4 LPAICLLTGKFI 39
LPAICLLTGKFI
Sbjct: 645 LPAICLLTGKFI 610
Score = 26.7 bits (52), Expect(2) = 6e-021
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -1 / +2
Query: 50 TSGVINFPVNKQMAG 6
T ++NFPV++QMAG
Sbjct: 599 TVXIMNFPVSRQMAG 643
>gb|CW315969.1|CW315969 104_807_11472644_148_35845_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11472644, DNA
sequence
Length = 726
Score = 141 bits (303), Expect(2) = 2e-038
Identities = 55/83 (66%), Positives = 69/83 (83%)
Frame = +1 / +2
Query: 142 HLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQG 321
H LQ++ ASL+F++LF+ IFAT IL MRWSGV I++WWRNEQFWVIGGVS+HLFAV QG
Sbjct: 392 HHLQISTFASLFFIALFMSIFATGILEMRWSGVSIEEWWRNEQFWVIGGVSAHLFAVVQG 571
Query: 322 LLXVIAGVDTSXTXTSKGGDDDE 390
LL V+AG+DT+ T TSK D++
Sbjct: 572 LLKVLAGIDTNFTVTSKATGDED 640
Score = 107 bits (229), Expect = 7e-023
Identities = 48/78 (61%), Positives = 55/78 (70%)
Frame = -1 / -1
Query: 368 DVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQIK 189
+V V LVS PA T P TAKRC DTPPMTQNCSFLH SS+ TPLH I RM VAKM +K
Sbjct: 618 EVTVKLVSIPARTLSRPCTTAKRCADTPPMTQNCSFLHHSSMLTPLHRISRMPVAKMDMK 439
Query: 188 SDMNHRLATLFSCSR*NS 135
S M ++LA + C *+S
Sbjct: 438 SAMKNKLANVLICR**HS 385
Score = 38.2 bits (77), Expect(2) = 2e-038
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +1 / +2
Query: 1 TLPAICLLTGKFITPEVKL 57
TLPA+CLLTGKFI P V +
Sbjct: 254 TLPAVCLLTGKFIMPSVSV 310
>gb|CW235189.1|CW235189 104_690_11214849_148_37413_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11214849, DNA
sequence
Length = 686
Score = 141 bits (303), Expect(2) = 2e-038
Identities = 55/83 (66%), Positives = 69/83 (83%)
Frame = +1 / +1
Query: 142 HLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQG 321
H LQ++ ASL+F++LF+ IFAT IL MRWSGV I++WWRNEQFWVIGGVS+HLFAV QG
Sbjct: 223 HHLQISTFASLFFIALFMSIFATGILEMRWSGVSIEEWWRNEQFWVIGGVSAHLFAVVQG 402
Query: 322 LLXVIAGVDTSXTXTSKGGDDDE 390
LL V+AG+DT+ T TSK D++
Sbjct: 403 LLKVLAGIDTNFTVTSKATGDED 471
Score = 107 bits (229), Expect = 7e-023
Identities = 48/78 (61%), Positives = 55/78 (70%)
Frame = -1 / -1
Query: 368 DVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQIK 189
+V V LVS PA T P TAKRC DTPPMTQNCSFLH SS+ TPLH I RM VAKM +K
Sbjct: 449 EVTVKLVSIPARTLSRPCTTAKRCADTPPMTQNCSFLHHSSMLTPLHRISRMPVAKMDMK 270
Query: 188 SDMNHRLATLFSCSR*NS 135
S M ++LA + C *+S
Sbjct: 269 SAMKNKLANVLICR**HS 216
Score = 38.2 bits (77), Expect(2) = 2e-038
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +1 / +1
Query: 1 TLPAICLLTGKFITPEVKL 57
TLPA+CLLTGKFI P V +
Sbjct: 85 TLPAVCLLTGKFIMPSVSV 141
>gb|CN132882.1|CN132882 OX1_8_F12.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_8_F12_A002 5', mRNA sequence
Length = 704
Score = 157 bits (337), Expect = 9e-038
Identities = 67/102 (65%), Positives = 76/102 (74%)
Frame = +1 / +2
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L + L F +L NVAS+WFM+LFICI T IL MRWSGV D RNEQFWV
Sbjct: 197 YCTLPAICLLTGKFITPELTNVASIWFMALFICIAVTGILEMRWSGVVFFDRRRNEQFWV 376
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDDEFSELY 405
IGGVS+HLF VFQGLL V+AG+DTS T TSK GDD+EFSELY
Sbjct: 377 IGGVSAHLFTVFQGLLKVLAGIDTSFTVTSKAGDDEEFSELY 502
Score = 111 bits (237), Expect(2) = 3e-028
Identities = 50/84 (59%), Positives = 53/84 (63%)
Frame = -1 / -3
Query: 404 YXXXXXXXXXPFDVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHL 225
Y FDV V LVS PA T R P NT KRC +TPPMTQNCSFL +S TPLHL
Sbjct: 501 YSSENSSSSPAFDVTVKLVSIPARTLRRPWNTVKRCAETPPMTQNCSFLRRSKKTTPLHL 322
Query: 224 IXRMLVAKMQIKSDMNHRLATLFS 153
I RM V MQ+KS MN LATL S
Sbjct: 321 ISRMPVTAMQMKSAMNQILATLVS 250
Score = 79.9 bits (168), Expect(2) = 3e-021
Identities = 40/84 (47%), Positives = 49/84 (58%)
Frame = +3 / +1
Query: 153 AEQCCQPVVHVTFYLHFCYKHPXNEMEWCWD**LVEE*AVLGHWRCVLAPLRCVSGTSXG 332
A QC +VH TF+LH C++HP NEMEWC * ++ AVLGHWRC L V S G
Sbjct: 250 AYQCR*YLVHGTFHLHCCHRHP*NEMEWCGFF*PPQKRAVLGHWRCFRTSLHGVPRPSQG 429
Query: 333 HSWC*YKLHXDIKGWR**RILRAV 404
++LH IKG +LRAV
Sbjct: 430 PRRYRHELHRHIKGRGRRGVLRAV 501
Score = 41.8 bits (85), Expect(2) = 3e-021
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = +1 / +2
Query: 1 TLPAICLLTGKFITPEV 51
TLPAICLLTGKFITPE+
Sbjct: 203 TLPAICLLTGKFITPEL 253
Score = 34.1 bits (68), Expect(2) = 3e-028
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = -3 / -2
Query: 48 LWSDKFPRQ*TDGRQ 4
LW DKFPR+ TDGRQ
Sbjct: 250 LWCDKFPREQTDGRQ 206
>gb|CW164547.1|CW164547 104_572_11152044_148_36463_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11152044, DNA
sequence
Length = 606
Score = 155 bits (334), Expect = 2e-037
Identities = 57/86 (66%), Positives = 73/86 (84%)
Frame = +1 / -3
Query: 151 QLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQGLLX 330
QL+N A++WF+ LF+ I TS+L +RWSG+GI+DWWRNEQFWVIGGVS+HLFAVFQG+L
Sbjct: 526 QLSNAATIWFLGLFMSIILTSVLELRWSGIGIEDWWRNEQFWVIGGVSAHLFAVFQGILK 347
Query: 331 VIAGVDTSXTXTSKGGDDDEFSELYL 408
+IAG+DT+ T T+K DD EF ELY+
Sbjct: 346 MIAGLDTNFTVTAKATDDAEFGELYV 269
>gb|CW031320.1|CW031320 104_259_10500738_116_30398 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10500738, DNA
sequence
Length = 854
Score = 141 bits (303), Expect(2) = 3e-037
Identities = 55/83 (66%), Positives = 69/83 (83%)
Frame = +1 / -3
Query: 142 HLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQG 321
H LQ++ ASL+F++LF+ IFAT IL MRWSGV I++WWRNEQFWVIGGVS+HLFAV QG
Sbjct: 720 HHLQISTFASLFFIALFMSIFATGILEMRWSGVSIEEWWRNEQFWVIGGVSAHLFAVVQG 541
Query: 322 LLXVIAGVDTSXTXTSKGGDDDE 390
LL V+AG+DT+ T TSK D++
Sbjct: 540 LLKVLAGIDTNFTVTSKATGDED 472
Score = 107 bits (229), Expect = 7e-023
Identities = 48/78 (61%), Positives = 55/78 (70%)
Frame = -1 / +2
Query: 368 DVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQIK 189
+V V LVS PA T P TAKRC DTPPMTQNCSFLH SS+ TPLH I RM VAKM +K
Sbjct: 494 EVTVKLVSIPARTLSRPCTTAKRCADTPPMTQNCSFLHHSSMLTPLHRISRMPVAKMDMK 673
Query: 188 SDMNHRLATLFSCSR*NS 135
S M ++LA + C *+S
Sbjct: 674 SAMKNKLANVLICR**HS 727
Score = 34.1 bits (68), Expect(2) = 3e-037
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1 / -3
Query: 7 PAICLLTGKFITPEVKL 57
PA+CLLTGKFI P V +
Sbjct: 852 PAVCLLTGKFIMPSVSV 802
>gb|CW148395.1|CW148395 104_547_11141932_148_35011_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11141932, DNA
sequence
Length = 621
Score = 154 bits (330), Expect = 9e-037
Identities = 58/79 (73%), Positives = 70/79 (88%)
Frame = +1 / -3
Query: 151 QLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQGLLX 330
Q++N+ S+WF+SLFI IFAT IL MRWSGVGID+WWRNEQFWVIGG+S+HLFAVFQGLL
Sbjct: 619 QISNLESVWFISLFISIFATGILEMRWSGVGIDEWWRNEQFWVIGGISAHLFAVFQGLLK 440
Query: 331 VIAGVDTSXTXTSKGGDDD 387
V+AG+DTS T TSK D++
Sbjct: 439 VLAGIDTSFTVTSKATDEE 383
Score = 108 bits (230), Expect = 5e-023
Identities = 44/73 (60%), Positives = 54/73 (73%)
Frame = -1 / +3
Query: 368 DVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQIK 189
+V V LVS PA T R P TA +C + PP+TQNCSFLH SS+PTPLHLI R+ VAK++IK
Sbjct: 402 EVTVKLVSIPASTFRRPWKTANKCAEIPPITQNCSFLHHSSMPTPLHLISRIPVAKIEIK 581
Query: 188 SDMNHRLATLFSC 150
SD+N L+ L C
Sbjct: 582 SDINQTLSRLLIC 620
>gb|BG101839.1|BG101839 RHIZ2_23_A10.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 647
Score = 153 bits (329), Expect = 1e-036
Identities = 60/73 (82%), Positives = 64/73 (87%)
Frame = +1 / +1
Query: 187 LFICIFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQGLLXVIAGVDTSXTXT 366
LFICI T IL MRWSGV IDDWWRNEQFWVIGGVS+HLFAVFQGLL V+AG+DTS T T
Sbjct: 1 LFICIAVTGILEMRWSGVAIDDWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTSFTVT 180
Query: 367 SKGGDDDEFSELY 405
SK GDD+EFSELY
Sbjct: 181 SKAGDDEEFSELY 219
Score = 108 bits (231), Expect = 4e-023
Identities = 46/72 (63%), Positives = 49/72 (68%)
Frame = -1 / -1
Query: 404 YXXXXXXXXXPFDVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHL 225
Y FDV V LVS PA T R P NTAKRC +TPPMTQNCSFLHQSS+ TPLHL
Sbjct: 218 YSSENSSSSPAFDVTVKLVSIPARTLRRPWNTAKRCAETPPMTQNCSFLHQSSMATPLHL 39
Query: 224 IXRMLVAKMQIK 189
I RM V MQ+K
Sbjct: 38 ISRMPVTAMQMK 3
>gb|CW496561.1|CW496561 fsbb001f288o02f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f288o02, DNA
sequence
Length = 628
Score = 137 bits (293), Expect(2) = 2e-036
Identities = 49/73 (67%), Positives = 64/73 (87%)
Frame = +1 / -3
Query: 151 QLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQGLLX 330
QL+N A++WF+ LF+ I TS+L +RWSG+GI+DWWRNEQFWVIGGVS+HLFAVFQG+L
Sbjct: 221 QLSNAATIWFLGLFMSIILTSVLELRWSGIGIEDWWRNEQFWVIGGVSAHLFAVFQGILK 42
Query: 331 VIAGVDTSXTXTS 369
+IAG+DT+ T T+
Sbjct: 41 MIAGLDTNFTVTA 3
Score = 92.7 bits (196), Expect(2) = 2e-021
Identities = 42/73 (57%), Positives = 46/73 (63%)
Frame = -1 / +1
Query: 371 FDVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQI 192
F V V LVS+PA+ R P NTA R DTPPMTQNCS HQSSIP PLH LV M +
Sbjct: 1 FAVTVKLVSSPAIILRIPWNTANRWADTPPMTQNCSLRHQSSIPMPLHRSSNTLVKMMDM 180
Query: 191 KSDMNHRLATLFS 153
K NH +A L S
Sbjct: 181 KRPRNHMVAALDS 219
Score = 35.4 bits (71), Expect(2) = 2e-036
Identities = 14/16 (87%), Positives = 14/16 (87%)
Frame = +1 / -1
Query: 4 LPAICLLTGKFITPEV 51
LPAICLLTGKFI P V
Sbjct: 343 LPAICLLTGKFIIPTV 296
Score = 29.9 bits (59), Expect(2) = 2e-021
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = -1 / +3
Query: 50 TSGVINFPVNKQMAG 6
T G++NFPV++QMAG
Sbjct: 297 TVGIMNFPVSRQMAG 341
>gb|BG103131.1|BG103131 RHIZ2_18_E07.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 669
Score = 149 bits (320), Expect = 2e-035
Identities = 56/73 (76%), Positives = 65/73 (89%)
Frame = +1 / +1
Query: 169 SLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQGLLXVIAGVD 348
S+WF+SLFI IFAT IL MRWSGVGID+WWRNEQFWVIGG+S+HLFAVFQGLL V+AG+D
Sbjct: 1 SIWFISLFISIFATGILEMRWSGVGIDEWWRNEQFWVIGGISAHLFAVFQGLLKVLAGID 180
Query: 349 TSXTXTSKGGDDD 387
T+ T TSK D+D
Sbjct: 181 TNFTVTSKASDED 219
Score = 104 bits (221), Expect = 9e-022
Identities = 44/65 (67%), Positives = 50/65 (76%)
Frame = -1 / -2
Query: 371 FDVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQI 192
F+V V LVS PA T R P TAKR + PPMTQNCSFLH SSIPTPLHLI R+ VAK++I
Sbjct: 203 FEVTVKLVSIPASTLRRPWKTAKRWAEIPPMTQNCSFLHHSSIPTPLHLISRIPVAKIEI 24
Query: 191 KSDMN 177
K +MN
Sbjct: 23 KREMN 9
>gb|CW481819.1|CW481819 fsbb001f241j14k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f241j14, DNA
sequence
Length = 573
Score = 148 bits (317), Expect = 5e-035
Identities = 60/87 (68%), Positives = 70/87 (80%)
Frame = +1 / -2
Query: 145 LLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQGL 324
LLQ+N +S+ F++LF+ I ATSIL M+W GV IDDWWRNEQFWVIGGVSSHLFA+ QGL
Sbjct: 515 LLQMNIYSSILFIALFVSIAATSILEMQWGGVRIDDWWRNEQFWVIGGVSSHLFALCQGL 336
Query: 325 LXVIAGVDTSXTXTSKGGDDDEFSELY 405
L V+ GV+T T KGGD DEFSELY
Sbjct: 335 LKVLGGVNTKFRVTLKGGDTDEFSELY 255
Score = 105 bits (223), Expect = 5e-022
Identities = 45/76 (59%), Positives = 54/76 (71%)
Frame = -1 / +1
Query: 371 FDVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQI 192
F V + LV TP T RSP ++AKRC++TPP+TQNCSFLHQSSI TP H I RMLVA M+
Sbjct: 289 FRVTLNLVFTPPRTLRSPWHSAKRCDETPPITQNCSFLHQSSILTPPHCISRMLVAAMET 468
Query: 191 KSDMNHRLATLFSCSR 144
MN+ L +F C R
Sbjct: 469 NRAMNNMLE*IFICRR 516
>gb|AW744882.1|AW744882 LG1_384_E04.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 589
Score = 147 bits (316), Expect = 7e-035
Identities = 57/96 (59%), Positives = 75/96 (78%)
Frame = +1 / +2
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C+L + L + F + +++N A ++F+ LF IFAT IL +RWSGVGI+DWWRNEQFWV
Sbjct: 137 YCVLPAICLLTNKFIIPEISNYAGMFFILLFASIFATGILELRWSGVGIEDWWRNEQFWV 316
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDD 387
IGG S+HLFAVFQGLL V+AG+DT+ T TSK D+D
Sbjct: 317 IGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDED 424
>gb|BE918058.1|BE918058 OV1_1_D06.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 610
Score = 147 bits (316), Expect = 7e-035
Identities = 57/96 (59%), Positives = 75/96 (78%)
Frame = +1 / +3
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C+L + L + F + +++N A ++F+ LF IFAT IL +RWSGVGI+DWWRNEQFWV
Sbjct: 201 YCVLPAICLLTNKFIIPEISNYAGMFFILLFASIFATGILELRWSGVGIEDWWRNEQFWV 380
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDD 387
IGG S+HLFAVFQGLL V+AG+DT+ T TSK D+D
Sbjct: 381 IGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDED 488
>gb|BE918108.1|BE918108 OV1_2_A10.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 598
Score = 147 bits (316), Expect = 7e-035
Identities = 57/96 (59%), Positives = 75/96 (78%)
Frame = +1 / +3
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C+L + L + F + +++N A ++F+ LF IFAT IL +RWSGVGI+DWWRNEQFWV
Sbjct: 201 YCVLPAICLLTNKFIIPEISNYAGMFFILLFASIFATGILELRWSGVGIEDWWRNEQFWV 380
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDD 387
IGG S+HLFAVFQGLL V+AG+DT+ T TSK D+D
Sbjct: 381 IGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDED 488
>gb|BG948058.1|BG948058 IP1_8_G12.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 597
Score = 147 bits (316), Expect = 7e-035
Identities = 57/87 (65%), Positives = 69/87 (79%)
Frame = +1 / +2
Query: 127 LCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLF 306
L F + LNN+AS+WF++LF+ I ATS+L +RWSGV I+DWWRNEQFWVIGGVS+HLF
Sbjct: 32 LTGKFIIPTLNNLASIWFIALFLSIIATSVLELRWSGVSIEDWWRNEQFWVIGGVSAHLF 211
Query: 307 AVFQGLLXVIAGVDTSXTXTSKGGDDD 387
AVFQG L V+ GVDTS T TSK D+
Sbjct: 212 AVFQGFLKVLGGVDTSFTVTSKAAGDE 292
Score = 100 bits (214), Expect = 9e-021
Identities = 48/84 (57%), Positives = 51/84 (60%)
Frame = -1 / -1
Query: 368 DVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQIK 189
+V V LVSTP T R P NTA RC DTPP+TQNCSF HQSS+ TPLH LVA M
Sbjct: 273 EVTVKLVSTPPSTLRKPWNTANRCADTPPITQNCSFRHQSSMLTPLHRSSSTLVAMMDRN 94
Query: 188 SDMNHRLATLFSCSR*NSEHKVQT 117
S MN LA LFS N QT
Sbjct: 93 SAMNQMLARLFSVGMMNLPVSRQT 22
>gb|BI074863.1|BI074863 IP1_16_A11.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 497
Score = 147 bits (316), Expect = 7e-035
Identities = 57/87 (65%), Positives = 69/87 (79%)
Frame = +1 / +2
Query: 127 LCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLF 306
L F + LNN+AS+WF++LF+ I ATS+L +RWSGV I+DWWRNEQFWVIGGVS+HLF
Sbjct: 32 LTGKFIIPTLNNLASIWFIALFLSIIATSVLELRWSGVSIEDWWRNEQFWVIGGVSAHLF 211
Query: 307 AVFQGLLXVIAGVDTSXTXTSKGGDDD 387
AVFQG L V+ GVDTS T TSK D+
Sbjct: 212 AVFQGFLKVLGGVDTSFTVTSKAAGDE 292
Score = 100 bits (214), Expect = 9e-021
Identities = 48/84 (57%), Positives = 51/84 (60%)
Frame = -1 / -3
Query: 368 DVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQIK 189
+V V LVSTP T R P NTA RC DTPP+TQNCSF HQSS+ TPLH LVA M
Sbjct: 273 EVTVKLVSTPPSTLRKPWNTANRCADTPPITQNCSFRHQSSMLTPLHRSSSTLVAMMDRN 94
Query: 188 SDMNHRLATLFSCSR*NSEHKVQT 117
S MN LA LFS N QT
Sbjct: 93 SAMNQMLARLFSVGMMNLPVSRQT 22
>gb|CF433027.1|CF433027 NIT1_20_E12.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_20_E12_A002 5', mRNA sequence
Length = 436
Score = 136 bits (291), Expect = 2e-031
Identities = 55/70 (78%), Positives = 58/70 (82%)
Frame = +1 / +2
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L + L F +LNNVASLWFMSLFICIFATSIL MRWSGVGIDDWWRNEQFWV
Sbjct: 227 YCTLPAICLLTGKFITPELNNVASLWFMSLFICIFATSILEMRWSGVGIDDWWRNEQFWV 406
Query: 280 IGGVSSHLFA 309
IGGVSSHLFA
Sbjct: 407 IGGVSSHLFA 436
Score = 124 bits (265), Expect(2) = 8e-035
Identities = 50/52 (96%), Positives = 51/52 (98%)
Frame = -1 / -2
Query: 308 AKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQIKSDMNHRLATLFS 153
AKRCEDTPPMTQNCSFLHQSSIPTPLHLI RMLVAKMQIKSDMNHRLATLF+
Sbjct: 435 AKRCEDTPPMTQNCSFLHQSSIPTPLHLISRMLVAKMQIKSDMNHRLATLFN 280
Score = 123 bits (264), Expect(2) = 2e-034
Identities = 46/50 (92%), Positives = 47/50 (94%)
Frame = +3 / +1
Query: 156 EQCCQPVVHVTFYLHFCYKHPXNEMEWCWD**LVEE*AVLGHWRCVLAPL 305
E CCQPVVHVT YLHFCYKHP NEMEWCW+**LVEE*AVLGHWRCVLAPL
Sbjct: 283 E*CCQPVVHVTLYLHFCYKHPRNEMEWCWN**LVEE*AVLGHWRCVLAPL 432
Score = 81.3 bits (171), Expect(2) = 1e-021
Identities = 36/53 (67%), Positives = 40/53 (75%)
Frame = -3 / -1
Query: 309 SEEVRGHTSNDPELLXXXXXXXXXXXPSHXXDACSKNADKK*HEPQAGNIVQL 151
S+EVRGHTSNDPELL PSH DACSKNA+K+*HEPQAGNI+QL
Sbjct: 436 SKEVRGHTSNDPELLIPPPIINSNTTPSHF*DACSKNANKE*HEPQAGNIIQL 278
Score = 42.3 bits (86), Expect(2) = 8e-035
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = -3 / -1
Query: 54 LYLWSDKFPRQ*TDGRQC 1
+ LWSDKFPRQ*T+GRQC
Sbjct: 286 IQLWSDKFPRQ*TNGRQC 233
Score = 41.8 bits (85), Expect(2) = 2e-034
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = +1 / +2
Query: 1 TLPAICLLTGKFITPEV 51
TLPAICLLTGKFITPE+
Sbjct: 233 TLPAICLLTGKFITPEL 283
Score = 41.4 bits (84), Expect(2) = 1e-021
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = -1 / -2
Query: 53 FTSGVINFPVNKQMAGN 3
F SGVINFPVNKQMAGN
Sbjct: 285 FNSGVINFPVNKQMAGN 235
>gb|CW213542.1|CW213542 104_645_11191609_148_37039_013 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11191609, DNA
sequence
Length = 289
Score = 147 bits (315), Expect = 1e-034
Identities = 56/79 (70%), Positives = 67/79 (84%)
Frame = +1 / +3
Query: 130 CSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLFA 309
C F +Q++N+ S+WF+SLFI IFAT IL MRWSGVGID+WWRNEQFWVIGG+S+HLFA
Sbjct: 51 CFYFS*MQISNLESVWFISLFISIFATGILEMRWSGVGIDEWWRNEQFWVIGGISAHLFA 230
Query: 310 VFQGLLXVIAGVDTSXTXT 366
VFQGL V+AG+DTS T T
Sbjct: 231 VFQGLPKVLAGIDTSFTVT 287
Score = 105 bits (223), Expect = 5e-022
Identities = 43/73 (58%), Positives = 53/73 (72%)
Frame = -1 / -1
Query: 368 DVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQIK 189
+V V LVS PA T P TA +C + PP+TQNCSFLH SS+PTPLHLI R+ VAK++IK
Sbjct: 289 EVTVKLVSIPASTLGRPWKTANKCAEIPPITQNCSFLHHSSMPTPLHLISRIPVAKIEIK 110
Query: 188 SDMNHRLATLFSC 150
SD+N L+ L C
Sbjct: 109 SDINQTLSRLLIC 71
>gb|CD423905.1|CD423905 SA1_2_G12.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_2_G12_A002 3', mRNA sequence
Length = 743
Score = 145 bits (311), Expect = 4e-034
Identities = 55/71 (77%), Positives = 63/71 (88%)
Frame = +1 / +3
Query: 175 WFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQGLLXVIAGVDTS 354
WF+SLFI IFAT IL MRWSGVGID+WWRNEQFWVIGG+S+HLFAVFQGLL V+AG+DTS
Sbjct: 3 WFISLFISIFATGILEMRWSGVGIDEWWRNEQFWVIGGISAHLFAVFQGLLKVLAGIDTS 182
Query: 355 XTXTSKGGDDD 387
T TSK D++
Sbjct: 183 FTVTSKATDEE 215
Score = 101 bits (216), Expect = 5e-021
Identities = 41/64 (64%), Positives = 50/64 (78%)
Frame = -1 / -2
Query: 368 DVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQIK 189
+V V LVS PA T R P TA +C + PP+TQNCSFLH SS+PTPLHLI R+ VAK++IK
Sbjct: 196 EVTVKLVSIPASTFRRPWKTANKCAEIPPITQNCSFLHHSSMPTPLHLISRIPVAKIEIK 17
Query: 188 SDMN 177
SD+N
Sbjct: 16 SDIN 5
>gb|CL148485.1|CL148485 104_328_10593130_116_31783_254 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10593130, DNA
sequence
Length = 591
Score = 144 bits (310), Expect = 5e-034
Identities = 55/80 (68%), Positives = 67/80 (83%)
Frame = +1 / +3
Query: 148 LQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQGLL 327
LQ++N A ++F+ LF IFAT IL +RWSGVGI+DWWRNEQFWVIGG S+HLFAVFQGLL
Sbjct: 45 LQISNYAGMFFILLFASIFATGILELRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLL 224
Query: 328 XVIAGVDTSXTXTSKGGDDD 387
V+AG+DT+ T TSK D+D
Sbjct: 225 KVLAGIDTNFTVTSKASDED 284
>gb|CW385345.1|CW385345 fsbb001f068m13k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f068m13, DNA
sequence
Length = 659
Score = 144 bits (310), Expect = 5e-034
Identities = 55/80 (68%), Positives = 67/80 (83%)
Frame = +1 / +2
Query: 148 LQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQGLL 327
LQ++N A ++F+ LF IFAT IL +RWSGVGI+DWWRNEQFWVIGG S+HLFAVFQGLL
Sbjct: 11 LQISNYAGMFFILLFASIFATGILELRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLL 190
Query: 328 XVIAGVDTSXTXTSKGGDDD 387
V+AG+DT+ T TSK D+D
Sbjct: 191 KVLAGIDTNFTVTSKASDED 250
>gb|BI245956.1|BI245956 IP1_65_G03.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 495
Score = 143 bits (307), Expect = 1e-033
Identities = 56/90 (62%), Positives = 70/90 (77%)
Frame = +1 / +2
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C + V L F + LNN+AS+WF++LF+ I ATS+L +RWSGV I+DWWRNEQFWV
Sbjct: 170 YCTIPAVCLLTGKFIIPTLNNLASIWFIALFLSIIATSVLELRWSGVSIEDWWRNEQFWV 349
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTS 369
IGGVS+HLFAVFQG L V+ GVDTS T T+
Sbjct: 350 IGGVSAHLFAVFQGFLKVLGGVDTSFTVTA 439
>gb|CL167974.1|CL167974 104_365_10810478_114_31804_158 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10810478, DNA
sequence
Length = 777
Score = 141 bits (303), Expect = 5e-033
Identities = 55/83 (66%), Positives = 69/83 (83%)
Frame = +1 / +2
Query: 142 HLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQG 321
H LQ++ ASL+F++LF+ IFAT IL MRWSGV I++WWRNEQFWVIGGVS+HLFAV QG
Sbjct: 17 HHLQISTFASLFFIALFMSIFATGILEMRWSGVSIEEWWRNEQFWVIGGVSAHLFAVVQG 196
Query: 322 LLXVIAGVDTSXTXTSKGGDDDE 390
LL V+AG+DT+ T TSK D++
Sbjct: 197 LLKVLAGIDTNFTVTSKATGDED 265
Score = 107 bits (229), Expect = 7e-023
Identities = 48/78 (61%), Positives = 55/78 (70%)
Frame = -1 / -1
Query: 368 DVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQIK 189
+V V LVS PA T P TAKRC DTPPMTQNCSFLH SS+ TPLH I RM VAKM +K
Sbjct: 243 EVTVKLVSIPARTLSRPCTTAKRCADTPPMTQNCSFLHHSSMLTPLHRISRMPVAKMDMK 64
Query: 188 SDMNHRLATLFSCSR*NS 135
S M ++LA + C *+S
Sbjct: 63 SAMKNKLANVLICR**HS 10
>gb|BG240580.1|BG240580 OV1_31_F08.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 538
Score = 142 bits (304), Expect(2) = 6e-033
Identities = 55/83 (66%), Positives = 67/83 (80%)
Frame = +1 / +2
Query: 139 FHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQ 318
F + +++N A +F+ LF IFAT IL +RWSGVGI+DWWRNEQFWVIGG S+HLFAVFQ
Sbjct: 11 FIIPEISNYAGAFFILLFASIFATGILELRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQ 190
Query: 319 GLLXVIAGVDTSXTXTSKGGDDD 387
GLL V+AG+DT+ T TSK DDD
Sbjct: 191 GLLKVLAGIDTNFTVTSKATDDD 259
Score = 102 bits (218), Expect = 2e-021
Identities = 42/66 (63%), Positives = 49/66 (74%)
Frame = -1 / -2
Query: 371 FDVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQI 192
FDV V VS PA T + P NTAKRC + PPMTQNCSFLHQSS+PTPLH ++ VAKM+
Sbjct: 243 FDVTVKFVSIPASTFKRPWNTAKRCAEVPPMTQNCSFLHQSSMPTPLHRSSKIPVAKMEA 64
Query: 191 KSDMNH 174
KS M +
Sbjct: 63 KSRMKN 46
Score = 18.5 bits (34), Expect(2) = 6e-033
Identities = 6/9 (66%), Positives = 7/9 (77%)
Frame = +1 / +2
Query: 25 TGKFITPEV 51
T KFI PE+
Sbjct: 2 TNKFIIPEI 28
>gb|CF430024.1|CF430024 PH1_25_C04.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_25_C04_A002 5', mRNA sequence
Length = 789
Score = 140 bits (300), Expect = 1e-032
Identities = 57/97 (58%), Positives = 73/97 (75%)
Frame = +1 / +1
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L V L F + ++ ASL+F++LF+ IFAT IL MRWSGV I++WWRNEQFWV
Sbjct: 412 YCTLPAVCLLTGKFIMPSISTFASLFFIALFMSIFATGILEMRWSGVSIEEWWRNEQFWV 591
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDDE 390
IGGVS+HLFAV QGLL V+AG+DT+ T TSK D++
Sbjct: 592 IGGVSAHLFAVVQGLLKVLAGIDTNFTVTSKATGDED 702
Score = 104 bits (221), Expect = 9e-022
Identities = 45/70 (64%), Positives = 51/70 (72%)
Frame = -1 / -2
Query: 368 DVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQIK 189
+V V LVS PA T P TAKRC DTPPMTQNCSFLH SS+ TPLH I RM VAKM +K
Sbjct: 680 EVTVKLVSIPARTLSRPCTTAKRCADTPPMTQNCSFLHHSSMLTPLHRISRMPVAKMDMK 501
Query: 188 SDMNHRLATL 159
S M ++LA +
Sbjct: 500 SAMKNKLANV 471
>gb|CF433703.1|CF433703 NIT1_28_F11.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_28_F11_A002 5', mRNA sequence
Length = 452
Score = 139 bits (299), Expect = 2e-032
Identities = 54/91 (59%), Positives = 72/91 (79%)
Frame = +1 / +3
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C+L + L + F + +++N A ++F+ LF IFAT IL ++WSGVGI+DWWRNEQFWV
Sbjct: 177 YCVLPAICLLTNKFIIPEISNYAGMFFILLFASIFATGILELKWSGVGIEDWWRNEQFWV 356
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSK 372
IGG S+HLFAVFQGLL V+AG+DT+ T TSK
Sbjct: 357 IGGTSAHLFAVFQGLLKVLAGIDTNFTVTSK 449
>gb|BI141114.1|BI141114 IP1_43_D01.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 412
Score = 137 bits (293), Expect = 1e-031
Identities = 56/91 (61%), Positives = 70/91 (76%)
Frame = +1 / +2
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L V L F + ++ ASL+F++LF+ IFAT IL MRWSGV I++WWRNEQFWV
Sbjct: 137 YCTLPAVCLLTGKFIMPSISTFASLFFIALFMSIFATGILEMRWSGVSIEEWWRNEQFWV 316
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSK 372
IGGVS+HLFAV QGLL V+AG+DT+ T TSK
Sbjct: 317 IGGVSAHLFAVVQGLLKVLAGIDTNFTVTSK 409
Score = 104 bits (221), Expect = 9e-022
Identities = 45/70 (64%), Positives = 51/70 (72%)
Frame = -1 / -2
Query: 368 DVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQIK 189
+V V LVS PA T P TAKRC DTPPMTQNCSFLH SS+ TPLH I RM VAKM +K
Sbjct: 405 EVTVKLVSIPARTLSRPCTTAKRCADTPPMTQNCSFLHHSSMLTPLHRISRMPVAKMDMK 226
Query: 188 SDMNHRLATL 159
S M ++LA +
Sbjct: 225 SAMKNKLANV 196
>gb|BE357339.1|BE357339 DG1_148_D12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 505
Score = 136 bits (291), Expect = 2e-031
Identities = 53/84 (63%), Positives = 68/84 (80%)
Frame = +1 / +3
Query: 139 FHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQ 318
F + ++ ASL+F++LF+ IFAT IL MRWSGV I++WWRNEQFWVIGGVS+HLFAV Q
Sbjct: 12 FIMPSISTFASLFFIALFMSIFATGILEMRWSGVSIEEWWRNEQFWVIGGVSAHLFAVVQ 191
Query: 319 GLLXVIAGVDTSXTXTSKGGDDDE 390
GLL V+AG+DT+ T TSK D++
Sbjct: 192 GLLKVLAGIDTNFTVTSKATGDED 263
Score = 104 bits (221), Expect = 9e-022
Identities = 45/70 (64%), Positives = 51/70 (72%)
Frame = -1 / -1
Query: 368 DVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQIK 189
+V V LVS PA T P TAKRC DTPPMTQNCSFLH SS+ TPLH I RM VAKM +K
Sbjct: 241 EVTVKLVSIPARTLSRPCTTAKRCADTPPMTQNCSFLHHSSMLTPLHRISRMPVAKMDMK 62
Query: 188 SDMNHRLATL 159
S M ++LA +
Sbjct: 61 SAMKNKLANV 32
>gb|CW315001.1|CW315001 104_805_11472128_148_35822_018 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11472128, DNA
sequence
Length = 685
Score = 134 bits (287), Expect = 7e-031
Identities = 52/75 (69%), Positives = 64/75 (85%)
Frame = +1 / +1
Query: 166 ASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQGLLXVIAGV 345
ASL+F++LF+ IFAT IL MRWSGV I++WWRNEQFWVIGGVS+HLFAV QGLL V+AG+
Sbjct: 1 ASLFFIALFMSIFATGILEMRWSGVSIEEWWRNEQFWVIGGVSAHLFAVVQGLLKVLAGI 180
Query: 346 DTSXTXTSKGGDDDE 390
DT+ T TSK D++
Sbjct: 181 DTNFTVTSKATGDED 225
Score = 101 bits (216), Expect = 5e-021
Identities = 44/67 (65%), Positives = 49/67 (73%)
Frame = -1 / -3
Query: 368 DVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQIK 189
+V V LVS PA T P TAKRC DTPPMTQNCSFLH SS+ TPLH I RM VAKM +K
Sbjct: 203 EVTVKLVSIPARTLSRPCTTAKRCADTPPMTQNCSFLHHSSMLTPLHRISRMPVAKMDMK 24
Query: 188 SDMNHRL 168
S M ++L
Sbjct: 23 SAMKNKL 3
>gb|BG050984.1|BG050984 FM1_55_A02.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 362
Score = 133 bits (285), Expect = 1e-030
Identities = 53/57 (92%), Positives = 54/57 (94%)
Frame = +1 / +2
Query: 235 GVGIDDWWRNEQFWVIGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDDEFSELY 405
GVGIDDWWRNEQFWVIGGVSSHLFAVFQGLL VIAGVDTS T TSKGGDD+EFSELY
Sbjct: 11 GVGIDDWWRNEQFWVIGGVSSHLFAVFQGLLKVIAGVDTSFTVTSKGGDDEEFSELY 181
>gb|BE362654.1|BE362654 DG1_88_F12.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 548
Score = 129 bits (276), Expect = 2e-029
Identities = 51/74 (68%), Positives = 57/74 (77%)
Frame = +1 / +2
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L + L F +L NVAS+WFM+LFICI T IL MRWSGV IDDWWRNEQFWV
Sbjct: 326 YCTLPAICLLTGKFITPELTNVASIWFMALFICIAVTGILEMRWSGVAIDDWWRNEQFWV 505
Query: 280 IGGVSSHLFAVFQG 321
IGGVS+HLFAVFQG
Sbjct: 506 IGGVSAHLFAVFQG 547
Score = 99.1 bits (210), Expect(2) = 9e-025
Identities = 42/56 (75%), Positives = 45/56 (80%)
Frame = -1 / -3
Query: 320 P*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQIKSDMNHRLATLFS 153
P NTAKRC +TPPMTQNCSFLHQSS+ TPLHLI RM V MQ+KS MN LATL S
Sbjct: 546 PWNTAKRCAETPPMTQNCSFLHQSSMATPLHLISRMPVTAMQMKSAMNQILATLVS 379
Score = 78.5 bits (165), Expect(2) = 6e-021
Identities = 33/54 (61%), Positives = 38/54 (70%)
Frame = +3 / +1
Query: 153 AEQCCQPVVHVTFYLHFCYKHPXNEMEWCWD**LVEE*AVLGHWRCVLAPLRCV 314
A QC +VH TF+LH C++HP NEMEWC *LVE+ AVLGHWRC LR V
Sbjct: 379 AYQCR*YLVHGTFHLHCCHRHP*NEMEWCGHR*LVEKRAVLGHWRCFRTSLRGV 540
Score = 41.8 bits (85), Expect(2) = 6e-021
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = +1 / +2
Query: 1 TLPAICLLTGKFITPEV 51
TLPAICLLTGKFITPE+
Sbjct: 332 TLPAICLLTGKFITPEL 382
Score = 34.1 bits (68), Expect(2) = 9e-025
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = -3 / -2
Query: 48 LWSDKFPRQ*TDGRQ 4
LW DKFPR+ TDGRQ
Sbjct: 379 LWCDKFPREQTDGRQ 335
>gb|CN129247.1|CN129247 RHOH1_34_G09.b3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_34_G09_A002 3', mRNA sequence
Length = 774
Score = 126 bits (269), Expect = 2e-028
Identities = 47/63 (74%), Positives = 54/63 (85%)
Frame = +1 / +1
Query: 199 IFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGG 378
IFAT IL +RWSGVGI+DWWRNEQFWVIGG S+HLF VFQGLL V+AG+DT+ T TSK
Sbjct: 1 IFATGILELRWSGVGIEDWWRNEQFWVIGGTSAHLFTVFQGLLKVLAGIDTNFTVTSKAS 180
Query: 379 DDD 387
D+D
Sbjct: 181 DED 189
>gb|CW235188.1|CW235188 104_690_11214849_116_37409_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11214849, DNA
sequence
Length = 601
Score = 125 bits (268), Expect = 3e-028
Identities = 48/70 (68%), Positives = 59/70 (84%)
Frame = +1 / -2
Query: 181 MSLFICIFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQGLLXVIAGVDTSXT 360
++LF+ IFAT IL MRWSGV I++WWRNEQFWVIGGVS+HLFAV QGLL V+AG+DT+ T
Sbjct: 600 IALFMSIFATGILEMRWSGVSIEEWWRNEQFWVIGGVSAHLFAVVQGLLKVLAGIDTNFT 421
Query: 361 XTSKGGDDDE 390
TSK D++
Sbjct: 420 VTSKATGDED 391
>gb|CL148486.1|CL148486 104_328_10593130_148_31782_254 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10593130, DNA
sequence
Length = 638
Score = 119 bits (254), Expect = 3e-026
Identities = 44/58 (75%), Positives = 51/58 (87%)
Frame = +1 / -2
Query: 214 ILXMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDD 387
IL +RWSGVGI+DWWRNEQFWVIGG S+HLFAVFQGLL V+AG+DT+ T TSK D+D
Sbjct: 634 ILELRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDED 461
>gb|CN127278.1|CN127278 RHOH1_22_C03.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_22_C03_A002 3', mRNA sequence
Length = 857
Score = 118 bits (253), Expect = 4e-026
Identities = 43/55 (78%), Positives = 50/55 (90%)
Frame = +1 / +3
Query: 223 MRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDD 387
MRWSGVGID+WWRNEQFWVIGG+S+HLFAVFQGLL V+AG+DT+ T TSK D+D
Sbjct: 6 MRWSGVGIDEWWRNEQFWVIGGISAHLFAVFQGLLKVLAGIDTNFTVTSKASDED 170
>gb|CN128917.1|CN128917 RHOH1_32_H10.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_32_H10_A002 3', mRNA sequence
Length = 785
Score = 118 bits (253), Expect = 4e-026
Identities = 43/55 (78%), Positives = 50/55 (90%)
Frame = +1 / +2
Query: 223 MRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDD 387
MRWSGVGID+WWRNEQFWVIGG+S+HLFAVFQGLL V+AG+DT+ T TSK D+D
Sbjct: 2 MRWSGVGIDEWWRNEQFWVIGGISAHLFAVFQGLLKVLAGIDTNFTVTSKASDED 166
>gb|BE357401.1|BE357401 DG1_15_D04.b2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 552
Score = 109 bits (232), Expect = 3e-023
Identities = 44/73 (60%), Positives = 55/73 (75%)
Frame = +1 / +2
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L V L F + ++ ASL+F++LF+ IFAT IL MRWSGV I++WWRNEQFWV
Sbjct: 332 YCTLPAVCLLTGKFIMPSISTFASLFFIALFMSIFATGILEMRWSGVSIEEWWRNEQFWV 511
Query: 280 IGGVSSHLFAVFQ 318
IGGVS+HLFAV Q
Sbjct: 512 IGGVSAHLFAVVQ 550
>gb|CW039030.1|CW039030 104_271_10505258_114_30387 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10505258, DNA
sequence
Length = 675
Score = 100 bits (213), Expect(2) = 9e-022
Identities = 35/59 (59%), Positives = 48/59 (81%)
Frame = +1 / +2
Query: 214 ILXMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDDE 390
+L ++WSG+G+++WWRNEQFWVIGG S+HL AV QGLL VIAG++ S T T+K +D+
Sbjct: 8 LLEVKWSGIGLEEWWRNEQFWVIGGTSAHLAAVLQGLLKVIAGIEISFTLTAKAAAEDD 184
Score = 23.1 bits (44), Expect(2) = 9e-022
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +1 / +2
Query: 379 DDDEFSELYL 408
DDD F+ELYL
Sbjct: 182 DDDPFAELYL 211
>gb|BG048793.1|BG048793 OV1_23_B06.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 420
Score = 101 bits (216), Expect = 5e-021
Identities = 38/68 (55%), Positives = 52/68 (76%)
Frame = +1 / +1
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C+L + L + F + +++N A ++F+ LF IFAT IL +RWSGVGI+DWWRNEQFWV
Sbjct: 217 YCVLPAICLLTNKFIIPEISNYAGMFFILLFASIFATGILELRWSGVGIEDWWRNEQFWV 396
Query: 280 IGGVSSHL 303
IGG S+HL
Sbjct: 397 IGGTSAHL 420
>gb|CW235146.1|CW235146 104_690_11214827_116_37407_042 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11214827, DNA
sequence
Length = 682
Score = 100 bits (214), Expect = 9e-021
Identities = 41/96 (42%), Positives = 60/96 (62%)
Frame = +1 / +3
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L + F + LN + + + I + ++L ++WSG+ +++WWRNEQFW+
Sbjct: 267 YCFLPALSLFSGQFIVQTLNVTFLTYLLIITITLCLLAMLEIKWSGIALEEWWRNEQFWL 446
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDD 387
IGG S+HL AV QGLL VIAG++ S T TSK DD
Sbjct: 447 IGGTSAHLAAVLQGLLKVIAGIEISFTLTSKQVGDD 554
>gb|CW235147.1|CW235147 104_690_11214827_148_37411_042 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11214827, DNA
sequence
Length = 651
Score = 100 bits (214), Expect = 9e-021
Identities = 41/96 (42%), Positives = 60/96 (62%)
Frame = +1 / -3
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L + F + LN + + + I + ++L ++WSG+ +++WWRNEQFW+
Sbjct: 478 YCFLPALSLFSGQFIVQTLNVTFLTYLLIITITLCLLAMLEIKWSGIALEEWWRNEQFWL 299
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDD 387
IGG S+HL AV QGLL VIAG++ S T TSK DD
Sbjct: 298 IGGTSAHLAAVLQGLLKVIAGIEISFTLTSKQVGDD 191
>gb|CW411521.1|CW411521 fsbb001f106l17k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f106l17, DNA
sequence
Length = 677
Score = 100 bits (214), Expect = 9e-021
Identities = 37/78 (47%), Positives = 55/78 (70%)
Frame = +1 / -3
Query: 154 LNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQGLLXV 333
LN + +++ I + A IL ++WSG+ ++DWWRNEQFW+I G S+HL+AV QGLL V
Sbjct: 663 LNVAFLCYVVTITITLIALGILEVKWSGIELEDWWRNEQFWLISGTSAHLYAVVQGLLKV 484
Query: 334 IAGVDTSXTXTSKGGDDD 387
+AG++ S T T+K +D
Sbjct: 483 MAGIEISFTLTAKAAAED 430
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 491,205,163
Number of Sequences: 832831
Number of extensions: 6357834
Number of successful extensions: 127386
Number of sequences better than 1.0e-020: 50
length of database: 163,786,556
effective HSP length: 52
effective length of database: 120,479,344
effective search space used: 10722661616
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)