TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAH2a02.xg.2.1
(644 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW057966.1|CW057966 104_300_10518495_5_30082 Sorghum met... 374 e-103
gb|CW433071.1|CW433071 fsbb001f148c01k0 Sorghum methylation... 357 9e-098
gb|BG103825.1|BG103825 RHIZ2_37_C06.b1_A003 Rhizome2 (RHIZ2... 343 2e-093
gb|CW501227.1|CW501227 fsbb001f296p02k0 Sorghum methylation... 318 7e-086
gb|CW264046.1|CW264046 104_732_11231062_148_35236_085 Sorgh... 235 8e-082
gb|CW184224.1|CW184224 104_600_11165039_116_36685_090 Sorgh... 235 8e-082
gb|CW372016.1|CW372016 fsbb001f047l17k0 Sorghum methylation... 201 4e-076
gb|CW179560.1|CW179560 104_593_11160163_148_36627_068 Sorgh... 152 3e-069
gb|CW132336.1|CW132336 104_515_11116157_116_34798_021 Sorgh... 176 4e-067
gb|CW329430.1|CW329430 104_826_11479840_148_35993_064 Sorgh... 201 2e-065
gb|CW377168.1|CW377168 fsbb001f055f23k0 Sorghum methylation... 152 8e-064
gb|CW449959.1|CW449959 fsbb001f188f15k0 Sorghum methylation... 176 1e-063
gb|CW298156.1|CW298156 104_780_11462430_116_35649_021 Sorgh... 152 2e-063
gb|BI643766.1|BI643766 IP1_56_G10.b1_A002 Immature pannicle... 207 4e-062
gb|BG465562.1|BG465562 RHIZ2_46_A10.b1_A003 Rhizome2 (RHIZ2... 201 2e-061
gb|CD227355.1|CD227355 CCC1_50_D12.g1_A007 Callus culture/c... 207 7e-060
gb|CW187969.1|CW187969 104_607_11172768_116_36728_088 Sorgh... 175 3e-059
gb|CW446947.1|CW446947 fsbb001f179n10f0 Sorghum methylation... 150 6e-059
gb|BG102383.1|BG102383 RHIZ2_23_A10.b1_A003 Rhizome2 (RHIZ2... 188 2e-058
gb|CW037674.1|CW037674 104_269_10504480_114_30383 Sorghum m... 154 1e-057
gb|CL160056.1|CL160056 104_350_10804706_116_31823_146 Sorgh... 142 1e-057
gb|CF071168.1|CF071168 FE1_15_B03.g1_A002 Iron-deficient se... 214 1e-054
gb|CL160055.1|CL160055 104_350_10804706_114_31822_146 Sorgh... 202 3e-053
gb|CL151475.1|CL151475 104_334_10779278_116_31362_062 Sorgh... 129 1e-052
gb|BE355233.1|BE355233 DG1_113_C09.b1_A002 Dark Grown 1 (DG... 207 2e-052
gb|BF481793.1|BF481793 FM1_20_D08.b1_A003 Floral-Induced Me... 207 2e-052
gb|CN129331.1|CN129331 RHOH1_34_G09.g1_A002 Acid- and alkal... 207 2e-052
gb|CF432727.1|CF432727 NIT1_18_C04.g1_A002 Nitrogen-deficie... 133 2e-052
gb|BI245743.1|BI245743 IP1_63_G04.b1_A002 Immature pannicle... 205 6e-052
gb|CW329429.1|CW329429 104_826_11479840_116_35994_064 Sorgh... 201 7e-051
gb|BF587214.1|BF587214 FM1_33_F03.b2_A003 Floral-Induced Me... 200 1e-050
gb|BG241776.1|BG241776 RHIZ2_50_A08.b1_A003 Rhizome2 (RHIZ2... 162 7e-050
gb|CW097123.1|CW097123 104_463_11002282_116_34345_045 Sorgh... 196 2e-049
gb|CX607503.1|CX607503 ANR1_29_C09.b1_A002 Anaerobic roots ... 129 8e-049
gb|CL151474.1|CL151474 104_334_10779278_114_31361_062 Sorgh... 152 9e-047
gb|CW101099.1|CW101099 104_468_11004458_116_34399_003 Sorgh... 104 4e-045
gb|CW058702.1|CW058702 104_301_10518887_115_30164 Sorghum m... 175 6e-045
gb|BF586580.1|BF586580 FM1_29_A05.b1_A003 Floral-Induced Me... 170 5e-043
gb|CW171951.1|CW171951 104_583_11156017_148_36534_015 Sorgh... 175 7e-043
gb|CW335960.1|CW335960 104_835_11483337_116_36094_045 Sorgh... 172 5e-042
gb|CD425359.1|CD425359 SA1_11_F01.g1_A002 Salicylic acid-tr... 96 3e-041
gb|BF655662.1|BF655662 FM1_47_C09.b1_A003 Floral-Induced Me... 167 2e-040
gb|CW502291.1|CW502291 fsbb001f298i22k0 Sorghum methylation... 106 2e-040
gb|CW305560.1|CW305560 104_790_11466376_116_37438_050 Sorgh... 111 2e-039
gb|CW349154.1|CW349154 fsbb001f009n18k0 Sorghum methylation... 100 1e-038
gb|BI075362.1|BI075362 IP1_19_F06.b1_A002 Immature pannicle... 158 9e-038
gb|CW370202.1|CW370202 fsbb001f044p22k0 Sorghum methylation... 156 3e-037
gb|CX616423.1|CX616423 GABR1_27_G04.g1_A002 GA- or brassino... 142 9e-037
gb|CW378708.1|CW378708 fsbb001f057j16k0 Sorghum methylation... 90 2e-036
gb|CW150095.1|CW150095 104_549_11142847_148_36304_026 Sorgh... 152 6e-036
gb|BE598881.1|BE598881 PI1_83_C07.b1_A002 Pathogen induced ... 152 6e-036
gb|BG052201.1|BG052201 RHIZ2_7_D11.b1_A003 Rhizome2 (RHIZ2)... 152 6e-036
gb|CF430163.1|CF430163 PH1_26_C10.g1_A002 Phosphorous-defic... 134 1e-035
gb|CF071638.1|CF071638 FE1_17_A12.g1_A002 Iron-deficient se... 134 1e-035
gb|CW343248.1|CW343248 104_845_11487316_148_36183_008 Sorgh... 133 2e-034
gb|CX616081.1|CX616081 GABR1_25_E12.g1_A002 GA- or brassino... 133 4e-034
gb|CD423662.1|CD423662 SA1_24_F02.g1_A002 Salicylic acid-tr... 133 4e-034
gb|CF073714.1|CF073714 FE1_11_A05.g1_A002 Iron-deficient se... 127 1e-033
gb|CL178382.1|CL178382 104_386_10894547_116_31912_227 Sorgh... 130 2e-033
gb|CW255645.1|CW255645 104_720_11226351_148_35134_058 Sorgh... 143 3e-033
gb|CW050141.1|CW050141 104_289_10514471_114_30202 Sorghum m... 104 2e-032
gb|CL151160.1|CL151160 104_333_10779050_116_31360_218 Sorgh... 136 4e-031
gb|CL161005.1|CL161005 104_352_10805411_116_31827_083 Sorgh... 136 4e-031
gb|CW463917.1|CW463917 fsbb001f212n18f0 Sorghum methylation... 136 4e-031
gb|CD431915.1|CD431915 ETH1_11_B10.g1_A002 Ethylene-treated... 134 1e-030
gb|CW030653.1|CW030653 104_258_10500352_114_30403 Sorghum m... 133 2e-030
gb|CW181993.1|CW181993 104_597_11163820_116_36662_012 Sorgh... 133 2e-030
gb|CW264242.1|CW264242 104_732_11231174_116_35305_049 Sorgh... 133 3e-030
gb|CD423540.1|CD423540 SA1_23_D05.g1_A002 Salicylic acid-tr... 132 7e-030
gb|CW789241.1|CW789241 SP__Ba0056B03.r SP__Ba Sorghum propi... 129 3e-029
gb|CW116440.1|CW116440 104_492_11107118_148_34603_061 Sorgh... 129 3e-029
gb|CW054161.1|CW054161 104_294_10516365_115_30183 Sorghum m... 127 2e-028
gb|CW335961.1|CW335961 104_835_11483337_148_36098_045 Sorgh... 127 2e-028
gb|BG947269.1|BG947269 IP1_3_E08.b1_A002 Immature pannicle ... 85 5e-028
gb|CZ012790.1|CZ012790 a0056B03r SP__Ba Sorghum propinquum ... 124 1e-027
gb|CX613174.1|CX613174 GABR1_6_E03.g1_A002 GA- or brassinol... 120 2e-026
gb|BG948020.1|BG948020 IP1_8_D05.b1_A002 Immature pannicle ... 120 2e-026
gb|BG463462.1|BG463462 EM1_49_G12.b1_A002 Embryo 1 (EM1) So... 119 5e-026
gb|CW335567.1|CW335567 104_834_11483110_116_36083_087 Sorgh... 94 1e-025
gb|BF481056.1|BF481056 FM1_15_G12.b1_A003 Floral-Induced Me... 116 2e-025
gb|CW420002.1|CW420002 fsbb001f126b21f0 Sorghum methylation... 105 3e-025
gb|CW420003.1|CW420003 fsbb001f126b21k0 Sorghum methylation... 95 7e-025
gb|CW431930.1|CW431930 fsbb001f146g08k0 Sorghum methylation... 113 3e-024
gb|CW497890.1|CW497890 fsbb001f290n24f0 Sorghum methylation... 110 3e-023
gb|CD213551.1|CD213551 HS1_41_E11.g1_A012 Heat-shocked seed... 93 3e-023
gb|BG052472.1|BG052472 RHIZ2_13_D07.b1_A003 Rhizome2 (RHIZ2... 95 4e-023
gb|CX607587.1|CX607587 ANR1_29_C09.g1_A002 Anaerobic roots ... 82 1e-022
gb|BF586023.1|BF586023 FM1_33_F03.b1_A003 Floral-Induced Me... 105 7e-022
gb|BM325214.1|BM325214 PIC1_41_B08.b1_A002 Pathogen-infecte... 105 7e-022
gb|CW172897.1|CW172897 104_584_11156545_148_36542_009 Sorgh... 104 1e-021
>gb|CW057966.1|CW057966 104_300_10518495_5_30082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10518495, DNA
sequence
Length = 546
Score = 374 bits (811), Expect = e-103
Identities = 151/179 (84%), Positives = 165/179 (92%)
Frame = +2 / +3
Query: 107 MSVVCELWFGFSWLLDQLPKLCPVNRATDLAVLKDKFETPTPSNPTGRSDLPGLDIFVST 286
MS+VCELWF FSWLLD LPK+ PVNR+TDLAVLK+KFETP+PSNP GRSDLPGLD+FVST
Sbjct: 3 MSIVCELWFAFSWLLDMLPKVNPVNRSTDLAVLKEKFETPSPSNPHGRSDLPGLDVFVST 182
Query: 287 ADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANMWVPFCR 466
ADPEKEP L TA TILSILAADYPVEKL+CYVSDDGGALLTFEAMAEAASFAN+WVPFC+
Sbjct: 183 ADPEKEPVLTTATTILSILAADYPVEKLACYVSDDGGALLTFEAMAEAASFANIWVPFCK 362
Query: 467 KHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRINGLPDSIRRRSDA 643
KH+IEPR PDSYF++K DP K K R DFVKDRR+VKRE+DEFKVRINGLPDSI RRSDA
Sbjct: 363 KHDIEPRQPDSYFSIKGDPTKGKRRSDFVKDRRKVKREFDEFKVRINGLPDSIGRRSDA 539
Score = 174 bits (375), Expect(2) = 7e-044
Identities = 81/122 (66%), Positives = 87/122 (71%)
Frame = -3 / -3
Query: 471 CLRQKGTHIXXXXXXXXXXXKVRRAPPSSET*QESFSTG*SAARMDRIVFAVTSGGSFSG 292
C QKGT + KV APPSS+T* SFSTG*SAARMDR+V AV S GSFSG
Sbjct: 367 CFLQKGTQMLAKLAASAMASKVSSAPPSSDT*HASFSTG*SAARMDRMVVAVVSTGSFSG 188
Query: 291 SAVDTNISSPGKSDRPVGLDGVGVSNLSFRTARSVARFTGHSFGSWSSSHEKPNQSSQTT 112
SAVDTN SSPG+S+RP GLDG GVSN S TARSV RFTG + GS SSS EK NQSS T
Sbjct: 187 SAVDTNTSSPGRSERPCGLDGDGVSNFSLSTARSVLRFTGFTLGSMSSSQEKANQSSHTM 8
Query: 111 DM 106
DM
Sbjct: 7 DM 2
Score = 103 bits (219), Expect = 3e-021
Identities = 49/143 (34%), Positives = 83/143 (58%)
Frame = -2 / -2
Query: 535 LVLVWVLLKIEVAVRIARLNVVLATERNPHISKASSFSHGFKSQESPSIIRNIARKLLHR 356
L L V L EVAVR+ L+VVL E +P + +A HG + ++ +++ ++AR+LLH
Sbjct: 431 LALGRVALDTEVAVRLPGLDVVLLAEGHPDVGEAGRLGHGLEGEQRAAVVGHVARQLLHW 252
Query: 355 VVSSKDGQNSVCCDQWRFFLRISSRYKYIKPW*IRPSSRVGRCWGLKLVFQDGKVSGPVH 176
VV +DGQ+ + LR+ +++++P + + RVGR L+L+ + +V PVH
Sbjct: 251 VVGCQDGQDGGGRGEHGLLLRVGRGHEHVQPRQVGAAVRVGRRRRLELLLEHCEVRAPVH 72
Query: 175 RAQLWQLVEQP*KTKPEFADNRH 107
L + V+QP + +PE A + H
Sbjct: 71 GVHLGEHVQQPGEGEPELAHDGH 3
Score = 25.4 bits (49), Expect(2) = 7e-044
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = -3 / -3
Query: 642 ASERRRIESGRP 607
ASERR +ESGRP
Sbjct: 538 ASERRPMESGRP 503
>gb|CW433071.1|CW433071 fsbb001f148c01k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f148c01, DNA
sequence
Length = 508
Score = 357 bits (774), Expect = 9e-098
Identities = 141/162 (87%), Positives = 157/162 (96%)
Frame = +2 / -2
Query: 158 LPKLCPVNRATDLAVLKDKFETPTPSNPTGRSDLPGLDIFVSTADPEKEPPLVTANTILS 337
LPKLCP+ RATDL+VLK+KFE PTP+NPTG+SDLPG+DIFVSTADPEKEP LVTANTILS
Sbjct: 507 LPKLCPIIRATDLSVLKEKFEMPTPNNPTGKSDLPGIDIFVSTADPEKEPVLVTANTILS 328
Query: 338 ILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANMWVPFCRKHNIEPRNPDSYFNLKK 517
ILAADYPVEKL+CY+SDDGGALLTFEAMAEAASFAN+WVPFCRKH+IEPRNPDSYFNLK+
Sbjct: 327 ILAADYPVEKLACYLSDDGGALLTFEAMAEAASFANLWVPFCRKHDIEPRNPDSYFNLKR 148
Query: 518 DPYKNKVRQDFVKDRRRVKREYDEFKVRINGLPDSIRRRSDA 643
DP+KNKV+ DFVKDRRR+KREYDEFKVR+NGLPD+IRRR DA
Sbjct: 147 DPFKNKVKPDFVKDRRRIKREYDEFKVRVNGLPDAIRRRCDA 22
Score = 145 bits (312), Expect(2) = 1e-034
Identities = 68/105 (64%), Positives = 73/105 (69%)
Frame = -3 / +2
Query: 471 CLRQKGTHIXXXXXXXXXXXKVRRAPPSSET*QESFSTG*SAARMDRIVFAVTSGGSFSG 292
C Q GT KV APPSS+ * SFSTG*SAARM+RIVFAVT GSFSG
Sbjct: 194 CFLQNGTQRLAKLAASAIASKVSSAPPSSDR*HASFSTG*SAARMERIVFAVTRTGSFSG 373
Query: 291 SAVDTNISSPGKSDRPVGLDGVGVSNLSFRTARSVARFTGHSFGS 157
SAVDTN+S PG+SD PVGL GVG+SN S T RSVAR GHSFGS
Sbjct: 374 SAVDTNMSIPGRSDLPVGLLGVGISNFSLSTERSVARMMGHSFGS 508
Score = 124 bits (266), Expect = 1e-027
Identities = 61/131 (46%), Positives = 84/131 (64%)
Frame = -2 / +1
Query: 550 KILANLVLVWVLLKIEVAVRIARLNVVLATERNPHISKASSFSHGFKSQESPSIIRNIAR 371
K+ +LVL + L++EVAVR+ NV+L E +P I KA FSH F+ ++ PSII I R
Sbjct: 115 KVWLHLVLEGISLEVEVAVRVPGFNVMLPAEWHPKIGKARCFSHCFEGEQCPSII*QITR 294
Query: 370 KLLHRVVSSKDGQNSVCCDQWRFFLRISSRYKYIKPW*IRPSSRVGRCWGLKLVFQDGKV 191
KLL+RVVS ++G+N VC DQ F LRISS +KY+ I + + RC LKL+ + G+V
Sbjct: 295 KLLNRVVSRENGENCVCSDQDWFLLRISS*HKYVNSREIGFACWIVRCGHLKLLLEHGEV 474
Query: 190 SGPVHRAQLWQ 158
AQLW+
Sbjct: 475 CCTDDGAQLWK 507
Score = 23.1 bits (44), Expect(2) = 1e-034
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -3 / +2
Query: 642 ASERRRIESGRP 607
AS+RRR+ SG+P
Sbjct: 23 ASQRRRMASGKP 58
>gb|BG103825.1|BG103825 RHIZ2_37_C06.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 501
Score = 343 bits (743), Expect = 2e-093
Identities = 141/146 (96%), Positives = 143/146 (97%)
Frame = +2 / +1
Query: 2 LSPYRLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVN 181
LSPYRLLILIRM VL LFL WRIK+KNEDA+WLWGMSVVCELWFGFSWLLDQLPKLCPVN
Sbjct: 64 LSPYRLLILIRMVVLALFLMWRIKNKNEDAMWLWGMSVVCELWFGFSWLLDQLPKLCPVN 243
Query: 182 RATDLAVLKDKFETPTPSNPTGRSDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPV 361
RATDLAVLKDKFETPTPSNPTGRSDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPV
Sbjct: 244 RATDLAVLKDKFETPTPSNPTGRSDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPV 423
Query: 362 EKLSCYVSDDGGALLTFEAMAEAASF 439
EKLSCYVSDDGGALLTFEAMAEAASF
Sbjct: 424 EKLSCYVSDDGGALLTFEAMAEAASF 501
Score = 300 bits (649), Expect = 2e-080
Identities = 122/146 (83%), Positives = 130/146 (89%)
Frame = +1 / +3
Query: 1 TQPIQASHSYPHGRPWSVPYMEN*AQE*GCHLALGHVCCLRTLVWFFMAARPAAKAVPCE 180
TQPIQASHSYPHGRP SVPY+EN* QE*GC++ALGHVCCL TLVW FMAA PAAKAVPCE
Sbjct: 63 TQPIQASHSYPHGRPCSVPYVEN*EQE*GCNVALGHVCCL*TLVWLFMAA*PAAKAVPCE 242
Query: 181 PGH*PCRPERQV*DPNTVQPYWTVGFTRA*YICIYC*SGERTSTGHSKHYSVHPCC*LPC 360
P H PC PERQV*D NTV+PYWT+ FTRA*+I +Y *S ERTS GHSKHY VHPCC*LPC
Sbjct: 243 PSHRPCCPERQV*DSNTVKPYWTIRFTRA*HIRVYS*SRERTSIGHSKHYPVHPCC*LPC 422
Query: 361 GEAFLLCF**WRGSPDF*SHG*SC*L 438
GEA LLCF**WRG+PDF*SHG*SC*L
Sbjct: 423 GEAXLLCF**WRGAPDF*SHG*SC*L 500
Score = 291 bits (630), Expect = 7e-078
Identities = 122/146 (83%), Positives = 129/146 (88%)
Frame = -2 / -1
Query: 439 KASSFSHGFKSQESPSIIRNIARKLLHRVVSSKDGQNSVCCDQWRFFLRISSRYKYIKPW 260
KASSFSHGFKSQE PSIIRNIAR LLHRVVSSKDGQ+SVCCDQWRFFL IS R++Y+KP
Sbjct: 501 KASSFSHGFKSQERPSIIRNIARXLLHRVVSSKDGQDSVCCDQWRFFLWISCRHEYVKPG 322
Query: 259 *IRPSSRVGRCWGLKLVFQDGKVSGPVHRAQLWQLVEQP*KTKPEFADNRHAPEPNGILI 80
*I SSRV RCW LKLVFQD KV G VHRAQLWQLV+QP*K KPEF DNRHAPEP+ ILI
Sbjct: 321 *I*SSSRV*RCWSLKLVFQDSKVGGSVHRAQLWQLVKQP*KAKPEFTDNRHAPEPHCILI 142
Query: 79 LVLNSPCKEQTKDGHADKNEKPVWAE 2
LVLNSP KEQ+KD HADKNEKPVWAE
Sbjct: 141 LVLNSPHKEQSKDDHADKNEKPVWAE 64
Score = 288 bits (623), Expect = 6e-077
Identities = 125/136 (91%), Positives = 129/136 (94%)
Frame = -3 / -2
Query: 408 VRRAPPSSET*QESFSTG*SAARMDRIVFAVTSGGSFSGSAVDTNISSPGKSDRPVGLDG 229
VR APPSSET*Q SFSTG*SAARMDRIVFAVT+GGSFSGSAVDTN+SSPGKSDRPVG DG
Sbjct: 470 VRSAPPSSET*QXSFSTG*SAARMDRIVFAVTNGGSFSGSAVDTNMSSPGKSDRPVGFDG 291
Query: 228 VGVSNLSFRTARSVARFTGHSFGSWSSSHEKPNQSSQTTDMPQSQMASSFLCLILHVRNR 49
VGVSNLSFRTARSVARFTGHSFGSWSSSHEKPNQSSQTTDMPQS +ASSFL LILH+RNR
Sbjct: 290 VGVSNLSFRTARSVARFTGHSFGSWSSSHEKPNQSSQTTDMPQSHIASSFLFLILHIRNR 111
Query: 48 PRTAMRIRMRSLYGLS 1
RT MRIRMRSLYGLS
Sbjct: 110 ARTTMRIRMRSLYGLS 63
Score = 274 bits (592), Expect = 1e-072
Identities = 120/145 (82%), Positives = 128/145 (88%)
Frame = -1 / -3
Query: 437 S*QLQPWLQKSGEPLHHQKHSKKASPQGSQQQGWTE*CLL*PVEVLSPDQQ*IQIYQALV 258
S*QLQPWLQKSG PLHHQKHSK ASPQGSQQQGWT *CLL*P+EVLS DQ * +I QA V
Sbjct: 499 S*QLQPWLQKSGAPLHHQKHSKXASPQGSQQQGWTG*CLL*PMEVLSLDQL*TRICQARV 320
Query: 257 NPTVQ*GWTVLGSQTCLSGRQGQWPGSQGTALAAGRAAMKNQTRVRRQQTCPRAKWHPHS 78
N VQ*G TVL SQTCLSG+QG+W GSQGTALAAG+AAMK+QTRV RQQTCPRA HPHS
Sbjct: 319 NLIVQ*GLTVLESQTCLSGQQGRWLGSQGTALAAGQAAMKSQTRVHRQQTCPRATLHPHS 140
Query: 77 CA*FSM*GTDQGRPCG*E*EACMG* 3
C+*FS *GT+QGRPCG*E*EACMG*
Sbjct: 139 CS*FST*GTEQGRPCG*E*EACMG* 65
Score = 154 bits (331), Expect(2) = 5e-054
Identities = 68/82 (82%), Positives = 69/82 (84%)
Frame = +3 / +2
Query: 3 SAHTGFSFLSAWPSLVCSLHGELSTRMRMPFGSGACLLSANSGLVFHGCSTSCQSCAL*T 182
SAHTGFSFLSAW SL+CSL GEL TRMRM GSGACLLS NSGL FHGC TSCQSCAL*T
Sbjct: 65 SAHTGFSFLSAWSSLLCSLCGELRTRMRMQCGSGACLLSVNSGLAFHGCLTSCQSCAL*T 244
Query: 183 GPLTLPS*KTSLRPQHRPTLLD 248
P TL S*KTSLR QHR TLLD
Sbjct: 245 EPPTLLS*KTSLRLQHRQTLLD 310
Score = 78.0 bits (164), Expect(2) = 5e-054
Identities = 31/33 (93%), Positives = 31/33 (93%)
Frame = +3 / +2
Query: 300 KNLHWSQQTLFCPSLLLTTLWRSFLAMFLMMEG 398
KNLHWSQQTL CPSLLLTTLWRS LAMFLMMEG
Sbjct: 362 KNLHWSQQTLSCPSLLLTTLWRSXLAMFLMMEG 460
>gb|CW501227.1|CW501227 fsbb001f296p02k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f296p02, DNA
sequence
Length = 641
Score = 318 bits (688), Expect = 7e-086
Identities = 132/149 (88%), Positives = 134/149 (89%)
Frame = +2 / -1
Query: 14 RLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVNRATD 193
RLLILIRM VL LFL WRIK KNEDA+WLW MSVVCELWFGFSWLLDQLPKLCPV RAT
Sbjct: 449 RLLILIRMVVLALFLMWRIKTKNEDAMWLWAMSVVCELWFGFSWLLDQLPKLCPVTRATA 270
Query: 194 LAVLKDKFETPTPSNPTGRSDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLS 373
LAVLK KFETP PS PTGRSDLPGL IFVS ADPEK+PPLV A TILSILAADYPVEKLS
Sbjct: 269 LAVLKAKFETPPPSTPTGRSDLPGLAIFVSPADPEKDPPLVPATTILSILAADYPVEKLS 90
Query: 374 CYVSDDGGALLTFEAMAEAASFANMWVPF 460
CYVSDDGGALLTFEAMAEAASFANMW PF
Sbjct: 89 CYVSDDGGALLTFEAMAEAASFANMWAPF 3
Score = 287 bits (621), Expect = 1e-076
Identities = 117/148 (79%), Positives = 125/148 (84%)
Frame = +1 / -3
Query: 10 IQASHSYPHGRPWSVPYMEN*AQE*GCHLALGHVCCLRTLVWFFMAARPAAKAVPCEPGH 189
+QASHSYPHGRP SVPY+EN* QE*GC++ALGHVCCL TLVW FMAA PAAKAVPC+P H
Sbjct: 453 LQASHSYPHGRPCSVPYVEN*DQE*GCNVALGHVCCL*TLVWLFMAA*PAAKAVPCDPSH 274
Query: 190 *PCRPERQV*DPNTVQPYWTVGFTRA*YICIYC*SGERTSTGHSKHYSVHPCC*LPCGEA 369
PC PE QV*D V PYWT+ FTRA +IC+ *S ER S G S HY VHPCC*LPCGEA
Sbjct: 273 RPCCPESQV*DSTPVDPYWTIRFTRACHICVSS*SRERPSIGPSNHYPVHPCC*LPCGEA 94
Query: 370 FLLCF**WRGSPDF*SHG*SC*LC*YVG 453
FLLCF**WRGSPDF*SHG*SC*LC*YVG
Sbjct: 93 FLLCF**WRGSPDF*SHG*SC*LC*YVG 10
Score = 271 bits (587), Expect = 6e-072
Identities = 120/150 (80%), Positives = 128/150 (85%)
Frame = -3 / +1
Query: 462 QKGTHIXXXXXXXXXXXKVRRAPPSSET*QESFSTG*SAARMDRIVFAVTSGGSFSGSAV 283
QKG HI KVRRAPPSSET*QESFSTG*SAARMDRIV A T+GGSFSGSA
Sbjct: 1 QKGAHILAKLAASAMASKVRRAPPSSET*QESFSTG*SAARMDRIVVAGTNGGSFSGSAG 180
Query: 282 DTNISSPGKSDRPVGLDGVGVSNLSFRTARSVARFTGHSFGSWSSSHEKPNQSSQTTDMP 103
DTN++SPGKSDRPVG+DG GVSNL+FRTAR+VAR TGHSFGSWSSSHEKPNQSSQTTDM
Sbjct: 181 DTNMASPGKSDRPVGVDGGGVSNLAFRTARAVARVTGHSFGSWSSSHEKPNQSSQTTDMA 360
Query: 102 QSQMASSFLCLILHVRNRPRTAMRIRMRSL 13
QS +ASSFL LILH+RNR RT MRIRMRSL
Sbjct: 361 QSHIASSFLVLILHIRNRARTTMRIRMRSL 450
Score = 264 bits (572), Expect = 7e-070
Identities = 117/149 (78%), Positives = 123/149 (82%)
Frame = -2 / +3
Query: 460 ERNPHISKASSFSHGFKSQESPSIIRNIARKLLHRVVSSKDGQNSVCCDQWRFFLRISSR 281
ER+PHISKASSFSHGFKSQESPSIIRNIARKLLHRVVSSKDGQ+S C DQWR FL IS R
Sbjct: 3 ERSPHISKASSFSHGFKSQESPSIIRNIARKLLHRVVSSKDGQDSGCWDQWRVFLWISWR 182
Query: 280 YKYIKPW*IRPSSRVGRCWGLKLVFQDGKVSGPVHRAQLWQLVEQP*KTKPEFADNRHAP 101
+KY KP *I SSR R W LKL FQD K G HRAQLWQLV+QP*K KPEF DNRH P
Sbjct: 183 HKYGKPG*I*SSSRGRRGWSLKLGFQDSKGGGSGHRAQLWQLVKQP*KAKPEFTDNRHGP 362
Query: 100 EPNGILILVLNSPCKEQTKDGHADKNEKP 14
EP+ ILIL LNSP KEQ+KD HADKNEKP
Sbjct: 363 EPHCILILGLNSPHKEQSKDDHADKNEKP 449
Score = 259 bits (559), Expect = 4e-068
Identities = 118/149 (79%), Positives = 127/149 (85%)
Frame = -1 / +2
Query: 461 RKEPTY*QS*QLQPWLQKSGEPLHHQKHSKKASPQGSQQQGWTE*CLL*PVEVLSPDQQ* 282
RKEPTY*QS*QLQPWLQKSGEPLHHQKHSKKASPQGSQQQGWT * LL P+E LS DQ
Sbjct: 2 RKEPTY*QS*QLQPWLQKSGEPLHHQKHSKKASPQGSQQQGWTG*WLLGPMEGLSLDQLE 181
Query: 281 IQIYQALVNPTVQ*GWTVLGSQTCLSGRQGQWPGSQGTALAAGRAAMKNQTRVRRQQTCP 102
QI+QA VN VQ*G T + SQT LSG+QG+W GSQGTALAAG+AAMK+QTRV RQQT P
Sbjct: 182 TQIWQARVNLIVQ*GSTGVESQTWLSGQQGRWLGSQGTALAAGQAAMKSQTRVHRQQTWP 361
Query: 101 RAKWHPHSCA*FSM*GTDQGRPCG*E*EA 15
RA HPHS +*FS *GT+QGRPCG*E*EA
Sbjct: 362 RATLHPHSWS*FST*GTEQGRPCG*E*EA 448
Score = 121 bits (259), Expect(2) = 2e-043
Identities = 56/78 (71%), Positives = 57/78 (73%)
Frame = +3 / -2
Query: 15 GFSFLSAWPSLVCSLHGELSTRMRMPFGSGACLLSANSGLVFHGCSTSCQSCAL*TGPLT 194
GFSFLSAW SL+CSL GEL RMRM GSG CLLS NSGL FHGC TSCQSCAL* P
Sbjct: 448 GFSFLSAWSSLLCSLCGELRPRMRMQCGSGPCLLSVNSGLAFHGCLTSCQSCAL*PEPPP 269
Query: 195 LPS*KTSLRPQHRPTLLD 248
L S*K SLR R LLD
Sbjct: 268 LLS*KPSLRLHPRRPLLD 215
Score = 75.8 bits (159), Expect(2) = 2e-043
Identities = 30/33 (90%), Positives = 30/33 (90%)
Frame = +3 / -2
Query: 300 KNLHWSQQTLFCPSLLLTTLWRSFLAMFLMMEG 398
K LHWSQQ L CPSLLLTTLWRSFLAMFLMMEG
Sbjct: 163 KTLHWSQQPLSCPSLLLTTLWRSFLAMFLMMEG 65
>gb|CW264046.1|CW264046 104_732_11231062_148_35236_085 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11231062, DNA
sequence
Length = 732
Score = 235 bits (507), Expect(2) = 8e-082
Identities = 95/133 (71%), Positives = 110/133 (82%)
Frame = +2 / +3
Query: 245 GRSDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMA 424
G S LPGLDIFV+TADP KEP L TAN+ILSILAADYPVE+ +CY+SDD G LLT+EAMA
Sbjct: 162 GTSRLPGLDIFVTTADPFKEPILSTANSILSILAADYPVERNTCYLSDDSGMLLTYEAMA 341
Query: 425 EAASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRI 604
EAA FA +WVPFCRKH IEPR P+SYF LK PY + ++DFV DRRRV++EYDEFK RI
Sbjct: 342 EAAKFATVWVPFCRKHGIEPRGPESYFELKSHPYMGRSQEDFVNDRRRVRKEYDEFKARI 521
Query: 605 NGLPDSIRRRSDA 643
NGL I++RSDA
Sbjct: 522 NGLEHDIKQRSDA 560
Score = 90.4 bits (191), Expect(2) = 8e-082
Identities = 32/49 (65%), Positives = 39/49 (79%)
Frame = +2 / +3
Query: 74 HKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVNRATDLAVLKDKFE 220
H+N DA+WLW S+ E WFGFSWLLDQLPKL P+NR DLAVL+ +F+
Sbjct: 6 HRNPDAMWLWVTSIAGEFWFGFSWLLDQLPKLNPINRVPDLAVLRQRFD 152
Score = 69.3 bits (145), Expect(2) = 1e-022
Identities = 36/76 (47%), Positives = 41/76 (53%)
Frame = -3 / -3
Query: 471 CLRQKGTHIXXXXXXXXXXXKVRRAPPSSET*QESFSTG*SAARMDRIVFAVTSGGSFSG 292
C RQKGT V P SSE * STG*SAARM+R+ AV GS +G
Sbjct: 388 CFRQKGTQTVANLAASAMAS*VSSIPESSER*HVLRSTG*SAARMERMELAVLRMGSLNG 209
Query: 291 SAVDTNISSPGKSDRP 244
SAV T +S PG+ D P
Sbjct: 208 SAVVTKMSRPGRRDVP 161
Score = 58.3 bits (121), Expect(2) = 1e-022
Identities = 26/49 (53%), Positives = 29/49 (59%)
Frame = -3 / -3
Query: 219 SNLSFRTARSVARFTGHSFGSWSSSHEKPNQSSQTTDMPQSQMASSFLC 73
SN TARS R G S GSWSSS EKPNQ+S D+ S +AS C
Sbjct: 151 SNRCRSTARSGTRLIGFSLGSWSSSQEKPNQNSPAIDVTHSHIASGLRC 5
>gb|CW184224.1|CW184224 104_600_11165039_116_36685_090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11165039, DNA
sequence
Length = 646
Score = 235 bits (507), Expect(2) = 8e-082
Identities = 95/133 (71%), Positives = 110/133 (82%)
Frame = +2 / +2
Query: 245 GRSDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMA 424
G S LPGLDIFV+TADP KEP L TAN+ILSILAADYPVE+ +CY+SDD G LLT+EAMA
Sbjct: 158 GTSRLPGLDIFVTTADPFKEPILSTANSILSILAADYPVERNTCYLSDDSGMLLTYEAMA 337
Query: 425 EAASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRI 604
EAA FA +WVPFCRKH IEPR P+SYF LK PY + ++DFV DRRRV++EYDEFK RI
Sbjct: 338 EAAKFATVWVPFCRKHGIEPRGPESYFELKSHPYMGRSQEDFVNDRRRVRKEYDEFKARI 517
Query: 605 NGLPDSIRRRSDA 643
NGL I++RSDA
Sbjct: 518 NGLEHDIKQRSDA 556
Score = 90.4 bits (191), Expect(2) = 8e-082
Identities = 32/49 (65%), Positives = 39/49 (79%)
Frame = +2 / +2
Query: 74 HKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVNRATDLAVLKDKFE 220
H+N DA+WLW S+ E WFGFSWLLDQLPKL P+NR DLAVL+ +F+
Sbjct: 2 HRNPDAMWLWVTSIAGEFWFGFSWLLDQLPKLNPINRVPDLAVLRQRFD 148
Score = 69.3 bits (145), Expect(2) = 1e-022
Identities = 36/76 (47%), Positives = 41/76 (53%)
Frame = -3 / -2
Query: 471 CLRQKGTHIXXXXXXXXXXXKVRRAPPSSET*QESFSTG*SAARMDRIVFAVTSGGSFSG 292
C RQKGT V P SSE * STG*SAARM+R+ AV GS +G
Sbjct: 384 CFRQKGTQTVANLAASAMAS*VSSIPESSER*HVLRSTG*SAARMERMELAVLRMGSLNG 205
Query: 291 SAVDTNISSPGKSDRP 244
SAV T +S PG+ D P
Sbjct: 204 SAVVTKMSRPGRRDVP 157
Score = 58.3 bits (121), Expect(2) = 1e-022
Identities = 26/49 (53%), Positives = 29/49 (59%)
Frame = -3 / -2
Query: 219 SNLSFRTARSVARFTGHSFGSWSSSHEKPNQSSQTTDMPQSQMASSFLC 73
SN TARS R G S GSWSSS EKPNQ+S D+ S +AS C
Sbjct: 147 SNRCRSTARSGTRLIGFSLGSWSSSQEKPNQNSPAIDVTHSHIASGLRC 1
>gb|CW372016.1|CW372016 fsbb001f047l17k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f047l17, DNA
sequence
Length = 710
Score = 201 bits (434), Expect(2) = 4e-076
Identities = 79/132 (59%), Positives = 102/132 (77%)
Frame = +2 / -1
Query: 245 GRSDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMA 424
G S LPG+D+FV+TADP EP L T N +LSILA DYPV++L+CY+SDD GAL+ +EA+
Sbjct: 458 GTSRLPGIDVFVTTADPIDEPILYTMNCVLSILAVDYPVDRLACYLSDDSGALILYEALV 279
Query: 425 EAASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRI 604
E FA +WVPFCRK++IEPR P+SYF P +V Q+F+ D RRV+ EYDEFKVR+
Sbjct: 278 EVGKFAPLWVPFCRKYSIEPRAPESYFEHVAPPQAGRVTQEFLNDYRRVQMEYDEFKVRL 99
Query: 605 NGLPDSIRRRSD 640
+ LPD+IR+RSD
Sbjct: 98 DILPDAIRKRSD 63
Score = 104 bits (222), Expect(2) = 4e-076
Identities = 39/71 (54%), Positives = 50/71 (70%)
Frame = +2 / -1
Query: 5 SPYRLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVNR 184
S YRLLI+IR+ + +F WRI+H D +W W MS+V ++WFGFSWLL+QLPK PV
Sbjct: 683 SCYRLLIIIRLIAVLVFFAWRIRHNKSDIMWFWTMSIVGDVWFGFSWLLNQLPKFNPVKT 504
Query: 185 ATDLAVLKDKF 217
DLA LK +F
Sbjct: 503 IPDLAALKQQF 471
Score = 69.3 bits (145), Expect(2) = 2e-022
Identities = 30/69 (43%), Positives = 40/69 (57%)
Frame = -3 / +1
Query: 219 SNLSFRTARSVARFTGHSFGSWSSSHEKPNQSSQTTDMPQSQMASSFLCLILHVRNRPRT 40
+N R ARS TG +FGSW SHEKPNQ+S T D+ Q+ M S LCL+ H +
Sbjct: 469 ANCCLRAARSGMVLTGLNFGSWLRSHEKPNQTSPTMDIVQNHMISDLLCLMRHAKKTRTA 648
Query: 39 AMRIRMRSL 13
R+ + +L
Sbjct: 649 INRMMISNL 675
Score = 57.4 bits (119), Expect(2) = 2e-022
Identities = 31/52 (59%), Positives = 33/52 (63%)
Frame = -3 / +1
Query: 399 APPSSET*QESFSTG*SAARMDRIVFAVTSGGSFSGSAVDTNISSPGKSDRP 244
AP SSE *Q S STG*S ARM+R F V S GS GSAV T S PG + P
Sbjct: 304 APLSSER*QASLSTG*STARMERTQFMV*SMGSSMGSAVVTKTSMPGSLEVP 459
>gb|CW179560.1|CW179560 104_593_11160163_148_36627_068 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11160163, DNA
sequence
Length = 685
Score = 152 bits (326), Expect(3) = 3e-069
Identities = 55/89 (61%), Positives = 72/89 (80%)
Frame = +2 / +3
Query: 251 SDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEA 430
S+LPG+D+F++T DP EP L T N++LSILA DYPVEK +CY+SDDGG L+ +EAM +
Sbjct: 294 SNLPGIDVFLTTVDPVDEPILYTVNSVLSILATDYPVEKYACYLSDDGGTLVHYEAMLQV 473
Query: 431 ASFANMWVPFCRKHNIEPRNPDSYFNLKK 517
ASFA +W PFCRKH +EPR P+SYF +K+
Sbjct: 474 ASFAKLWAPFCRKHGVEPRAPESYFGVKR 560
Score = 98.2 bits (208), Expect(3) = 3e-069
Identities = 32/70 (45%), Positives = 51/70 (72%)
Frame = +2 / +3
Query: 14 RLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVNRATD 193
R +IL+R+ + F WRI+++N D +W+W MS+ ++WFG SW+L+QLPKL P+ R D
Sbjct: 72 RFVILLRLIAIIAFFIWRIRNRNRDGVWIWAMSMAGDVWFGLSWVLNQLPKLNPIKRVPD 251
Query: 194 LAVLKDKFET 223
LA ++D+ E+
Sbjct: 252 LAAIRDQHES 281
Score = 51.9 bits (107), Expect(3) = 3e-069
Identities = 19/42 (45%), Positives = 30/42 (71%)
Frame = +2 / +3
Query: 512 KKDPYKNKVRQDFVKDRRRVKREYDEFKVRINGLPDSIRRRS 637
++ PY + ++F D RRV+REY+EF+VRI+ L +I +RS
Sbjct: 558 RRQPYTGSMPEEFTSDHRRVRREYEEFRVRIDSLFSTIYQRS 683
>gb|CW132336.1|CW132336 104_515_11116157_116_34798_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11116157, DNA
sequence
Length = 746
Score = 176 bits (379), Expect(2) = 4e-067
Identities = 69/134 (51%), Positives = 92/134 (68%)
Frame = +2 / -3
Query: 239 PTGRSDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEA 418
P G S LP +D+FV+TADP EP L T N+ILSILA DYP+++ +CY+SDD G L+ ++A
Sbjct: 441 PDGDSILPAIDVFVTTADPIDEPVLYTMNSILSILAVDYPIDRYACYLSDDSGTLIEYDA 262
Query: 419 MAEAASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKV 598
+AE A FA +W PFCRKH+IEPR P+SYF + Y K +F+ D R V EY +K
Sbjct: 261 LAETAKFAALWAPFCRKHSIEPRAPESYFQREGMIYNGKSPSEFINDYRHVNVEYQRYKA 82
Query: 599 RINGLPDSIRRRSD 640
R+ L +IR RS+
Sbjct: 81 RLEMLTSTIRERSN 40
Score = 100 bits (212), Expect(2) = 4e-067
Identities = 36/72 (50%), Positives = 49/72 (68%)
Frame = +2 / -3
Query: 11 YRLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVNRAT 190
+R LILIR+ + LF+ WRIKH N D +W W SVV ++WF FSWLL Q+PK P+ R+
Sbjct: 654 HRTLILIRLIAVILFIGWRIKHNNSDVMWFWTTSVVADVWFAFSWLLYQMPKFNPIKRSP 475
Query: 191 DLAVLKDKFETP 226
DL L+ ++ P
Sbjct: 474 DLDALRQYYDLP 439
Score = 65.2 bits (136), Expect(2) = 5e-022
Identities = 30/64 (46%), Positives = 38/64 (59%)
Frame = -3 / +2
Query: 204 RTARSVARFTGHSFGSWSSSHEKPNQSSQTTDMPQSQMASSFLCLILHVRNRPRTAMRIR 25
R +RS G +FG W SSHEK NQ+S TT++ Q+ M S LCLI H N+ RIR
Sbjct: 461 RASRSGDLLMGLNFGIW*SSHEKANQTSATTEVVQNHMTSELLCLIRHPMNKITAMRRIR 640
Query: 24 MRSL 13
+ L
Sbjct: 641 ISVL 652
Score = 60.2 bits (125), Expect(2) = 5e-022
Identities = 32/78 (41%), Positives = 37/78 (47%)
Frame = -3 / +2
Query: 471 CLRQKGTHIXXXXXXXXXXXKVRRAPPSSET*QESFSTG*SAARMDRIVFAVTSGGSFSG 292
C RQKG H P SS+ * S G*S ARM+RI F V + GS G
Sbjct: 209 CFRQKGAHKAANFAVSAKASYSISVPLSSDR*HAYLSMG*STARMERIEFIVYNTGSSMG 388
Query: 291 SAVDTNISSPGKSDRPVG 238
SAV T S G+ + P G
Sbjct: 389 SAVVTKTSMAGRMESPSG 442
>gb|CW329430.1|CW329430 104_826_11479840_148_35993_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11479840, DNA
sequence
Length = 738
Score = 201 bits (434), Expect(2) = 2e-065
Identities = 79/132 (59%), Positives = 102/132 (77%)
Frame = +2 / +2
Query: 245 GRSDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMA 424
G S LPG+D+FV+TADP EP L T N +LSILA DYPV++L+CY+SDD GAL+ +EA+
Sbjct: 137 GTSRLPGIDVFVTTADPIDEPILYTMNCVLSILAVDYPVDRLACYLSDDSGALILYEALV 316
Query: 425 EAASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRI 604
E FA +WVPFCRK++IEPR P+SYF P +V Q+F+ D RRV+ EYDEFKVR+
Sbjct: 317 EVGKFAPLWVPFCRKYSIEPRAPESYFEHVAPPQAGRVTQEFLNDYRRVQMEYDEFKVRL 496
Query: 605 NGLPDSIRRRSD 640
+ LPD+IR+RSD
Sbjct: 497 DILPDAIRKRSD 532
Score = 69.3 bits (145), Expect(2) = 2e-065
Identities = 25/41 (60%), Positives = 30/41 (73%)
Frame = +2 / +2
Query: 95 WLWGMSVVCELWFGFSWLLDQLPKLCPVNRATDLAVLKDKF 217
W W MS+V ++WFGFSWLL+QLPK PV DLA LK +F
Sbjct: 2 WFWTMSIVGDVWFGFSWLLNQLPKFNPVKTIPDLAALKQQF 124
>gb|CW377168.1|CW377168 fsbb001f055f23k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f055f23, DNA
sequence
Length = 769
Score = 152 bits (326), Expect(3) = 8e-064
Identities = 55/89 (61%), Positives = 72/89 (80%)
Frame = +2 / +3
Query: 251 SDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEA 430
S+LPG+D+F++T DP EP L T N++LSILA DYPVEK +CY+SDDGG L+ +EAM +
Sbjct: 159 SNLPGIDVFLTTVDPVDEPILYTVNSVLSILATDYPVEKYACYLSDDGGTLVHYEAMLQV 338
Query: 431 ASFANMWVPFCRKHNIEPRNPDSYFNLKK 517
ASFA +W PFCRKH +EPR P+SYF +K+
Sbjct: 339 ASFAKLWAPFCRKHGVEPRAPESYFGVKR 425
Score = 75.8 bits (159), Expect(3) = 8e-064
Identities = 24/48 (50%), Positives = 36/48 (75%)
Frame = +2 / +3
Query: 80 NEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVNRATDLAVLKDKFET 223
N D +W+W MS+ ++WFG SW+L+QLPKL P+ R DLA ++D+ E+
Sbjct: 3 NRDGVWIWAMSMAGDVWFGLSWVLNQLPKLNPIKRVPDLAAIRDQHES 146
Score = 56.1 bits (116), Expect(3) = 8e-064
Identities = 21/44 (47%), Positives = 32/44 (72%)
Frame = +2 / +3
Query: 512 KKDPYKNKVRQDFVKDRRRVKREYDEFKVRINGLPDSIRRRSDA 643
++ PY + ++F D RRV+REY+EFKVRI+ L +I +RS+A
Sbjct: 423 RRQPYTGSMPEEFTSDHRRVRREYEEFKVRIDSLFSTIYQRSEA 554
>gb|CW449959.1|CW449959 fsbb001f188f15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f188f15, DNA
sequence
Length = 773
Score = 176 bits (379), Expect(2) = 1e-063
Identities = 69/134 (51%), Positives = 92/134 (68%)
Frame = +2 / +2
Query: 239 PTGRSDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEA 418
P G S LP +D+FV+TADP EP L T N+ILSILA DYP+++ +CY+SDD G L+ ++A
Sbjct: 176 PDGDSILPAIDVFVTTADPIDEPVLYTMNSILSILAVDYPIDRYACYLSDDSGTLIEYDA 355
Query: 419 MAEAASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKV 598
+AE A FA +W PFCRKH+IEPR P+SYF + Y K +F+ D R V EY +K
Sbjct: 356 LAETAKFAALWAPFCRKHSIEPRAPESYFQREGMIYNGKSPSEFINDYRHVNVEYQRYKA 535
Query: 599 RINGLPDSIRRRSD 640
R+ L +IR RS+
Sbjct: 536 RLEMLTSTIRERSN 577
Score = 88.6 bits (187), Expect(2) = 1e-063
Identities = 30/59 (50%), Positives = 40/59 (67%)
Frame = +2 / +2
Query: 50 LFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVNRATDLAVLKDKFETP 226
LF+ WRIKH N D +W W SVV ++WF FSWLL Q+PK P+ R+ DL L+ ++ P
Sbjct: 2 LFIGWRIKHNNSDVMWFWTTSVVADVWFAFSWLLYQMPKFNPIKRSPDLDALRQYYDLP 178
>gb|CW298156.1|CW298156 104_780_11462430_116_35649_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11462430, DNA
sequence
Length = 672
Score = 152 bits (326), Expect(3) = 2e-063
Identities = 55/89 (61%), Positives = 72/89 (80%)
Frame = +2 / -1
Query: 251 SDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEA 430
S+LPG+D+F++T DP EP L T N++LSILA DYPVEK +CY+SDDGG L+ +EAM +
Sbjct: 336 SNLPGIDVFLTTVDPVDEPILYTVNSVLSILATDYPVEKYACYLSDDGGTLVHYEAMLQV 157
Query: 431 ASFANMWVPFCRKHNIEPRNPDSYFNLKK 517
ASFA +W PFCRKH +EPR P+SYF +K+
Sbjct: 156 ASFAKLWAPFCRKHGVEPRAPESYFGVKR 70
Score = 98.2 bits (208), Expect(3) = 2e-063
Identities = 32/70 (45%), Positives = 51/70 (72%)
Frame = +2 / -1
Query: 14 RLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVNRATD 193
R +IL+R+ + F WRI+++N D +W+W MS+ ++WFG SW+L+QLPKL P+ R D
Sbjct: 558 RFVILLRLIAIIAFFIWRIRNRNRDGVWIWAMSMAGDVWFGLSWVLNQLPKLNPIKRVPD 379
Query: 194 LAVLKDKFET 223
LA ++D+ E+
Sbjct: 378 LAAIRDQHES 349
Score = 32.7 bits (65), Expect(3) = 2e-063
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2 / -1
Query: 512 KKDPYKNKVRQDFVKDRRRVKREY 583
++ PY + ++F D RRV+REY
Sbjct: 72 RRQPYTGSMPEEFTSDHRRVRREY 1
>gb|BI643766.1|BI643766 IP1_56_G10.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 556
Score = 207 bits (446), Expect(2) = 4e-062
Identities = 81/121 (66%), Positives = 99/121 (81%)
Frame = +2 / +3
Query: 251 SDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEA 430
S L +D+FVST DP KEPPL+TANT+LSILA DYPV+K+SCYVSDDG A+LTFE+++E
Sbjct: 132 SQLAPIDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGSAMLTFESLSET 311
Query: 431 ASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRING 610
A FA WVPFC+KHNIEPR P+ YF K D K+K++ FVK+RR +KREY+EFKVRIN
Sbjct: 312 AEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINA 491
Query: 611 L 613
L
Sbjct: 492 L 494
Score = 52.4 bits (108), Expect(2) = 4e-062
Identities = 19/36 (52%), Positives = 25/36 (69%)
Frame = +2 / +3
Query: 113 VVCELWFGFSWLLDQLPKLCPVNRATDLAVLKDKFE 220
V+CE+WF SWLLDQ PK P+NR T L L +++
Sbjct: 9 VICEVWFALSWLLDQFPKWYPINRETYLDRLALRYD 116
>gb|BG465562.1|BG465562 RHIZ2_46_A10.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 580
Score = 201 bits (433), Expect(2) = 2e-061
Identities = 80/121 (66%), Positives = 96/121 (79%)
Frame = +2 / +1
Query: 251 SDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEA 430
S L +D FVST DP KEPPLVTANT+LSIL+ DYPVEK+SCYVSDDG A+LTFEA++E
Sbjct: 139 SQLAPIDFFVSTVDPSKEPPLVTANTVLSILSVDYPVEKVSCYVSDDGAAMLTFEALSET 318
Query: 431 ASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRING 610
+ FA WVPFC+K N+EPR P+ YF K D K+KV FV++RR +KREY+EFKVRIN
Sbjct: 319 SEFAKKWVPFCKKFNLEPRAPEWYFQQKIDYLKDKVAASFVRERRAMKREYEEFKVRINA 498
Query: 611 L 613
L
Sbjct: 499 L 501
Score = 56.5 bits (117), Expect(2) = 2e-061
Identities = 20/39 (51%), Positives = 27/39 (69%)
Frame = +2 / +1
Query: 104 GMSVVCELWFGFSWLLDQLPKLCPVNRATDLAVLKDKFE 220
G+SV+CE+WF SW+LDQ PK P+ R T L L +F+
Sbjct: 7 GISVICEIWFAMSWILDQFPKWLPIERETYLDRLSLRFD 123
>gb|CD227355.1|CD227355 CCC1_50_D12.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_50_D12_A007 5', mRNA sequence
Length = 669
Score = 207 bits (446), Expect(2) = 7e-060
Identities = 81/121 (66%), Positives = 99/121 (81%)
Frame = +2 / +1
Query: 251 SDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEA 430
S L +D+FVST DP KEPPL+TANT+LSILA DYPV+K+SCYVSDDG A+LTFE+++E
Sbjct: 115 SQLAPIDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGSAMLTFESLSET 294
Query: 431 ASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRING 610
A FA WVPFC+KHNIEPR P+ YF K D K+K++ FVK+RR +KREY+EFKVRIN
Sbjct: 295 AEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINA 474
Query: 611 L 613
L
Sbjct: 475 L 477
Score = 45.1 bits (92), Expect(2) = 7e-060
Identities = 17/33 (51%), Positives = 22/33 (66%)
Frame = +2 / +1
Query: 122 ELWFGFSWLLDQLPKLCPVNRATDLAVLKDKFE 220
E+WF SWLLDQ PK P+NR T L L +++
Sbjct: 1 EVWFALSWLLDQFPKWYPINRETYLDRLALRYD 99
>gb|CW187969.1|CW187969 104_607_11172768_116_36728_088 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11172768, DNA
sequence
Length = 636
Score = 175 bits (377), Expect(3) = 3e-059
Identities = 69/106 (65%), Positives = 87/106 (82%)
Frame = +2 / -2
Query: 257 LPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAAS 436
L +D+FVST DP KEPPLVTANT+LSILA DYPV+K+SCYVSDDG ++LTFEA++E A
Sbjct: 473 LSAVDLFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGASMLTFEALSETAE 294
Query: 437 FANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVK 574
FA WVPFC+K +IEPR P+ YF+LK D K+KV+ FV++RR +K
Sbjct: 293 FARKWVPFCKKFSIEPRAPEFYFSLKVDYLKDKVQPTFVQERRAMK 156
Score = 63.4 bits (132), Expect(3) = 3e-059
Identities = 23/45 (51%), Positives = 32/45 (71%)
Frame = +2 / -2
Query: 86 DAIWLWGMSVVCELWFGFSWLLDQLPKLCPVNRATDLAVLKDKFE 220
DAI LW +S++CE+WF SW+LDQ PK P++R T L L ++E
Sbjct: 629 DAIGLWLVSIICEIWFAISWILDQFPKWFPIDRETYLDRLTLRYE 495
Score = 29.9 bits (59), Expect(3) = 3e-059
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +2 / -1
Query: 572 KREYDEFKVRINGL 613
+REY+EFKVRIN L
Sbjct: 72 QREYEEFKVRINAL 31
>gb|CW446947.1|CW446947 fsbb001f179n10f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f179n10, DNA
sequence
Length = 546
Score = 150 bits (323), Expect(2) = 6e-059
Identities = 54/89 (60%), Positives = 72/89 (80%)
Frame = +2 / +2
Query: 251 SDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEA 430
S+LPG+D+F++T DP EP L T N++LSILA DYPVEK +CY+SDDGG L+ +EAM +
Sbjct: 233 SNLPGIDVFLTTVDPVDEPILYTVNSVLSILATDYPVEKYACYLSDDGGTLVHYEAMLQV 412
Query: 431 ASFANMWVPFCRKHNIEPRNPDSYFNLKK 517
ASFA +W PFCRKH ++PR P+SYF +K+
Sbjct: 413 ASFAKLWAPFCRKHGVQPRAPESYFRVKR 499
Score = 98.2 bits (208), Expect(2) = 6e-059
Identities = 32/70 (45%), Positives = 51/70 (72%)
Frame = +2 / +2
Query: 14 RLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVNRATD 193
R +IL+R+ + F WRI+++N D +W+W MS+ ++WFG SW+L+QLPKL P+ R D
Sbjct: 11 RFVILLRLIAIIAFFIWRIRNRNRDGVWIWAMSMAGDVWFGLSWVLNQLPKLNPIKRVPD 190
Query: 194 LAVLKDKFET 223
LA ++D+ E+
Sbjct: 191 LAAIRDQHES 220
>gb|BG102383.1|BG102383 RHIZ2_23_A10.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 491
Score = 188 bits (405), Expect(2) = 2e-058
Identities = 74/114 (64%), Positives = 90/114 (78%)
Frame = +2 / +1
Query: 251 SDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEA 430
S L +D FVST DP KEPPLVTANT+LSIL+ DYPVEK+SCYVSDDG A+LTFEA++E
Sbjct: 148 SQLAPIDFFVSTVDPSKEPPLVTANTVLSILSVDYPVEKVSCYVSDDGAAMLTFEALSET 327
Query: 431 ASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEF 592
+ FA WVPFC+K N+EPR P+ YF K D K+KV FV++RR +KREY+EF
Sbjct: 328 SEFAKKWVPFCKKFNLEPRAPEWYFQQKIDYLKDKVAASFVRERRAMKREYEEF 489
Score = 58.8 bits (122), Expect(2) = 2e-058
Identities = 21/41 (51%), Positives = 28/41 (68%)
Frame = +2 / +1
Query: 98 LWGMSVVCELWFGFSWLLDQLPKLCPVNRATDLAVLKDKFE 220
LW +SV+CE+WF SW+LDQ PK P+ R T L L +F+
Sbjct: 10 LWLISVICEIWFAMSWILDQFPKWLPIERETYLDRLSLRFD 132
>gb|CW037674.1|CW037674 104_269_10504480_114_30383 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10504480, DNA
sequence
Length = 796
Score = 154 bits (331), Expect(2) = 1e-057
Identities = 59/103 (57%), Positives = 79/103 (76%)
Frame = +2 / -1
Query: 245 GRSDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMA 424
G S LPG+D+FV+TADP EP L T N +LSILA DYPV++L+CY++DD GAL+ +EA+
Sbjct: 313 GGSILPGIDVFVTTADPVSEPVLYTMNCVLSILATDYPVDRLTCYLTDDSGALVLYEALV 134
Query: 425 EAASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFV 553
EAASFA +WVPFCRKH++EPR P+SY L+ Y + +F+
Sbjct: 133 EAASFAALWVPFCRKHSVEPRAPESYLQLEGMVYNGRSPGEFM 5
Score = 90.4 bits (191), Expect(2) = 1e-057
Identities = 34/69 (49%), Positives = 46/69 (66%)
Frame = +2 / -1
Query: 14 RLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVNRATD 193
R+LIL+R+ + LF+ WRIKH N D + W SVV ++WF SWLL QLPK P+ R D
Sbjct: 535 RVLILVRLVAVILFIAWRIKHNNSDVM*FWVTSVVGDVWFALSWLLYQLPKFSPIKRTPD 356
Query: 194 LAVLKDKFE 220
LA L+ ++
Sbjct: 355 LAALRRHYD 329
Score = 73.0 bits (153), Expect(2) = 3e-027
Identities = 30/63 (47%), Positives = 40/63 (63%)
Frame = -3 / +3
Query: 198 ARSVARFTGHSFGSWSSSHEKPNQSSQTTDMPQSQMASSFLCLILHVRNRPRTAMRIRMR 19
ARS R G +FGSW SSH++ NQ+S TTD+ Q+ M S LCL+ H NR R R+
Sbjct: 351 ARSGVRLMGLNFGSW*SSHDRANQTSPTTDVTQNHMTSELLCLMRHAMNRMTATRRTRIS 530
Query: 18 SLY 10
+L+
Sbjct: 531 TLF 539
Score = 69.8 bits (146), Expect(2) = 3e-027
Identities = 36/76 (47%), Positives = 40/76 (52%)
Frame = -3 / +3
Query: 471 CLRQKGTHIXXXXXXXXXXXKVRRAPPSSET*QESFSTG*SAARMDRIVFAVTSGGSFSG 292
C RQKGTH AP SS * S STG*S ARM+R F V S GS +G
Sbjct: 87 CFRQKGTHRAAKLAASTSASYRTSAPLSSVR*HVSRSTG*SVARMERTQFMVYSTGSLTG 266
Query: 291 SAVDTNISSPGKSDRP 244
SAV T S PG+ + P
Sbjct: 267 SAVVTKTSMPGRMEPP 314
>gb|CL160056.1|CL160056 104_350_10804706_116_31823_146 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10804706, DNA
sequence
Length = 760
Score = 142 bits (305), Expect(2) = 1e-057
Identities = 54/87 (62%), Positives = 69/87 (79%)
Frame = +2 / +1
Query: 239 PTGRSDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEA 418
P G S LPG+D+FV+TADP EP L T N +LSILA DYPV++L+CY+SDD GAL+ +EA
Sbjct: 499 PDGTSRLPGIDVFVTTADPIDEPILYTMNCVLSILAVDYPVDRLACYLSDDSGALVLYEA 678
Query: 419 MAEAASFANMWVPFCRKHNIEPRNPDS 499
+ E FA +WVPFCRK++IEPR P+S
Sbjct: 679 LVEVGKFAPLWVPFCRKYSIEPRAPES 759
Score = 101 bits (216), Expect(2) = 1e-057
Identities = 39/74 (52%), Positives = 50/74 (67%)
Frame = +2 / +1
Query: 5 SPYRLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVNR 184
S +RLLI+IR+ + +F WRI+H D +W W MS+V ++WFGFSWLL+QLPK PV
Sbjct: 280 SCHRLLIIIRLIAVLVFFAWRIRHNKSDIMWFWTMSIVGDVWFGFSWLLNQLPKFNPVKT 459
Query: 185 ATDLAVLKDKFETP 226
DLA LK F P
Sbjct: 460 IPDLAALKRHFGFP 501
Score = 67.5 bits (141), Expect(2) = 1e-022
Identities = 30/71 (42%), Positives = 39/71 (54%)
Frame = -3 / -3
Query: 225 GVSNLSFRTARSVARFTGHSFGSWSSSHEKPNQSSQTTDMPQSQMASSFLCLILHVRNRP 46
G R ARS TG +FGSW SHEKPNQ+S T D+ Q+ M S LCL+ H +
Sbjct: 500 GKPKCRLRAARSGMVLTGLNFGSWLRSHEKPNQTSPTMDIVQNHMMSDLLCLMRHAKKTR 321
Query: 45 RTAMRIRMRSL 13
R+ + +L
Sbjct: 320 TAINRMMISNL 288
Score = 59.7 bits (124), Expect(2) = 1e-022
Identities = 32/54 (59%), Positives = 34/54 (62%)
Frame = -3 / -3
Query: 399 APPSSET*QESFSTG*SAARMDRIVFAVTSGGSFSGSAVDTNISSPGKSDRPVG 238
AP SSE *Q S STG*S ARM+R F V S GS GSAV T S PG + P G
Sbjct: 659 APLSSER*QASLSTG*STARMERTQFMVYSMGSSMGSAVVTKTSIPGSLEVPSG 498
>gb|CF071168.1|CF071168 FE1_15_B03.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_15_B03_A002 5', mRNA sequence
Length = 698
Score = 214 bits (462), Expect = 1e-054
Identities = 87/88 (98%), Positives = 87/88 (98%)
Frame = +2 / +1
Query: 380 VSDDGGALLTFEAMAEAASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKD 559
VSDDGGALLTFEAMAEAASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKD
Sbjct: 7 VSDDGGALLTFEAMAEAASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKD 186
Query: 560 RRRVKREYDEFKVRINGLPDSIRRRSDA 643
RRRVKREYDEFKVRIN LPDSIRRRSDA
Sbjct: 187 RRRVKREYDEFKVRINALPDSIRRRSDA 270
Score = 122 bits (262), Expect(2) = 1e-034
Identities = 56/57 (98%), Positives = 56/57 (98%)
Frame = -2 / -3
Query: 550 KILANLVLVWVLLKIEVAVRIARLNVVLATERNPHISKASSFSHGFKSQESPSIIRN 380
KILANLVLV VLLKIEVAVRIARLNVVLATERNPHISKASSFSHGFKSQESPSIIRN
Sbjct: 177 KILANLVLVRVLLKIEVAVRIARLNVVLATERNPHISKASSFSHGFKSQESPSIIRN 7
Score = 44.6 bits (91), Expect(2) = 1e-034
Identities = 20/22 (90%), Positives = 20/22 (90%)
Frame = -1 / -2
Query: 644 THQSVGVSSQADH*S*P*TRHT 579
THQSVGVSSQA H*S*P*T HT
Sbjct: 271 THQSVGVSSQAAH*S*P*THHT 206
>gb|CL160055.1|CL160055 104_350_10804706_114_31822_146 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10804706, DNA
sequence
Length = 698
Score = 202 bits (435), Expect(2) = 3e-053
Identities = 79/134 (58%), Positives = 102/134 (76%)
Frame = +2 / -1
Query: 239 PTGRSDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEA 418
P G S LPG+D+FV+TADP EP L T N +LSILA DYPV++L+CY+SDD GAL+ +EA
Sbjct: 629 PDGTSRLPGIDVFVTTADPIDEPILYTMNCVLSILAVDYPVDRLACYLSDDSGALVLYEA 450
Query: 419 MAEAASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKV 598
+ E FA +WVPFCRK++IEPR P+SYF P +V Q+F+ D RRV+ EYDEFKV
Sbjct: 449 LVEVGKFAPLWVPFCRKYSIEPRAPESYFEHVAPPQAGRVTQEFLNDYRRVQMEYDEFKV 270
Query: 599 RINGLPDSIRRRSD 640
R++ LPD+I +RSD
Sbjct: 269 RLDNLPDAICKRSD 228
Score = 28.1 bits (55), Expect(2) = 3e-053
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = +2 / -1
Query: 155 QLPKLCPVNRATDLAVLKDKFETP 226
QLPK PV DLA LK F P
Sbjct: 698 QLPKFNPVKTIPDLAALKRHFGFP 627
>gb|CL151475.1|CL151475 104_334_10779278_116_31362_062 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10779278, DNA
sequence
Length = 662
Score = 129 bits (277), Expect(2) = 1e-052
Identities = 47/76 (61%), Positives = 61/76 (80%)
Frame = +2 / +1
Query: 251 SDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEA 430
S+LPG+D+F++T DP EP L T N++LSILA DYPVEK +CY+SDDGG L+ +EAM +
Sbjct: 433 SNLPGIDVFLTTVDPVDEPILYTVNSVLSILATDYPVEKYACYLSDDGGTLVHYEAMLQV 612
Query: 431 ASFANMWVPFCRKHNI 478
ASFA +W PFCRKH +
Sbjct: 613 ASFAKLWAPFCRKHGV 660
Score = 98.2 bits (208), Expect(2) = 1e-052
Identities = 32/70 (45%), Positives = 51/70 (72%)
Frame = +2 / +1
Query: 14 RLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVNRATD 193
R +IL+R+ + F WRI+++N D +W+W MS+ ++WFG SW+L+QLPKL P+ R D
Sbjct: 211 RFVILLRLIAIIAFFIWRIRNRNRDGVWIWAMSMAGDVWFGLSWVLNQLPKLNPIKRVPD 390
Query: 194 LAVLKDKFET 223
LA ++D+ E+
Sbjct: 391 LAAIRDQHES 420
>gb|BE355233.1|BE355233 DG1_113_C09.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 494
Score = 207 bits (446), Expect = 2e-052
Identities = 81/121 (66%), Positives = 99/121 (81%)
Frame = +2 / +2
Query: 251 SDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEA 430
S L +D+FVST DP KEPPL+TANT+LSILA DYPV+K+SCYVSDDG A+LTFE+++E
Sbjct: 62 SQLAPIDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGSAMLTFESLSET 241
Query: 431 ASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRING 610
A FA WVPFC+KHNIEPR P+ YF K D K+K++ FVK+RR +KREY+EFKVRIN
Sbjct: 242 AEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINA 421
Query: 611 L 613
L
Sbjct: 422 L 424
>gb|BF481793.1|BF481793 FM1_20_D08.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 475
Score = 207 bits (446), Expect = 2e-052
Identities = 81/121 (66%), Positives = 99/121 (81%)
Frame = +2 / +2
Query: 251 SDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEA 430
+ L +D+FVST DP KEPPL+TANT+LSILA DYPV+K+SCYVSDDG A+LTFEA++E
Sbjct: 8 AQLAPIDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSET 187
Query: 431 ASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRING 610
A FA WVPFC+KHNIEPR P+ YF K D K+K++ FVK+RR +KREY+EFKVRIN
Sbjct: 188 AEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINA 367
Query: 611 L 613
L
Sbjct: 368 L 370
>gb|CN129331.1|CN129331 RHOH1_34_G09.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_34_G09_A002 5', mRNA sequence
Length = 848
Score = 207 bits (446), Expect = 2e-052
Identities = 81/121 (66%), Positives = 99/121 (81%)
Frame = +2 / +1
Query: 251 SDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEA 430
S L +D+FVST DP KEPPL+TANT+LSILA DYPV+K+SCYVSDDG A+LTFE+++E
Sbjct: 91 SQLAPIDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGSAMLTFESLSET 270
Query: 431 ASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRING 610
A FA WVPFC+KHNIEPR P+ YF K D K+K++ FVK+RR +KREY+EFKVRIN
Sbjct: 271 AEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINA 450
Query: 611 L 613
L
Sbjct: 451 L 453
>gb|CF432727.1|CF432727 NIT1_18_C04.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_18_C04_A002 5', mRNA sequence
Length = 627
Score = 133 bits (284), Expect(2) = 2e-052
Identities = 50/78 (64%), Positives = 64/78 (82%)
Frame = +2 / +3
Query: 251 SDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEA 430
S L +D FVST DP KEPPL TANT+LSI + DYPV+K+SCYVSDDG A+LTFEA++E
Sbjct: 393 SQLAPMDFFVSTVDPLKEPPLGTANTVLSIHSVDYPVDKVSCYVSDDGAAMLTFEALSET 572
Query: 431 ASFANMWVPFCRKHNIEP 484
+ FA WVPFC+++++EP
Sbjct: 573 SEFAKKWVPFCKRYSLEP 626
Score = 94.5 bits (200), Expect(2) = 2e-052
Identities = 35/73 (47%), Positives = 50/73 (68%)
Frame = +2 / +3
Query: 2 LSPYRLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVN 181
++PYR++I+IR+ VLG F +R+ H DA LW +SV+CE+WF SW+LDQ PK P+
Sbjct: 159 INPYRMIIIIRLVVLGFFFHYRVMHPVPDAFALWLISVICEIWFAMSWILDQFPKWFPIE 338
Query: 182 RATDLAVLKDKFE 220
R T L L +F+
Sbjct: 339 RETYLDRLTLRFD 377
>gb|BI245743.1|BI245743 IP1_63_G04.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 455
Score = 205 bits (442), Expect = 6e-052
Identities = 84/121 (69%), Positives = 98/121 (80%)
Frame = +2 / +1
Query: 251 SDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEA 430
S L +DIFVST DP KEPPLVTANT+LSILA DYPV+K+SCYVSDDG A+LTF+A+AE
Sbjct: 22 SQLAAVDIFVSTVDPMKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFDALAET 201
Query: 431 ASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRING 610
+ FA WVPF +K+NIEPR P+ YF K D K+KV FVKDRR +KREY+EFKVRING
Sbjct: 202 SEFARKWVPFVKKYNIEPRAPEWYFCQKIDYLKDKVHPSFVKDRRAMKREYEEFKVRING 381
Query: 611 L 613
L
Sbjct: 382 L 384
>gb|CW329429.1|CW329429 104_826_11479840_116_35994_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11479840, DNA
sequence
Length = 672
Score = 201 bits (434), Expect = 7e-051
Identities = 79/132 (59%), Positives = 102/132 (77%)
Frame = +2 / -3
Query: 245 GRSDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMA 424
G S LPG+D+FV+TADP EP L T N +LSILA DYPV++L+CY+SDD GAL+ +EA+
Sbjct: 619 GTSRLPGIDVFVTTADPIDEPILYTMNCVLSILAVDYPVDRLACYLSDDSGALILYEALV 440
Query: 425 EAASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRI 604
E FA +WVPFCRK++IEPR P+SYF P +V Q+F+ D RRV+ EYDEFKVR+
Sbjct: 439 EVGKFAPLWVPFCRKYSIEPRAPESYFEHVAPPQAGRVTQEFLNDYRRVQMEYDEFKVRL 260
Query: 605 NGLPDSIRRRSD 640
+ LPD+IR+RSD
Sbjct: 259 DILPDAIRKRSD 224
>gb|BF587214.1|BF587214 FM1_33_F03.b2_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 401
Score = 200 bits (432), Expect = 1e-050
Identities = 79/121 (65%), Positives = 97/121 (80%)
Frame = +2 / +2
Query: 251 SDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEA 430
S L +D FVST DP KEPPL+TANT+LSILA DYPVEK+SCYVSDDG A+LTFE++AE
Sbjct: 32 SGLAPVDFFVSTVDPLKEPPLITANTVLSILAVDYPVEKISCYVSDDGSAMLTFESLAET 211
Query: 431 ASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRING 610
A FA WVPFC+K+ IEPR P+ YF+ K D K+K+ FVK+RR +KR+Y+E+KVRIN
Sbjct: 212 AEFARKWVPFCKKYTIEPRAPEFYFSQKIDYLKDKIHPSFVKERRAMKRDYEEYKVRINA 391
Query: 611 L 613
L
Sbjct: 392 L 394
>gb|BG241776.1|BG241776 RHIZ2_50_A08.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 429
Score = 162 bits (348), Expect(2) = 7e-050
Identities = 64/96 (66%), Positives = 76/96 (79%)
Frame = +2 / +1
Query: 251 SDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEA 430
S L +D FVST DP KEPPLVTANT+LSIL+ DYPVEK+SCYVSDDG A+LTFEA++E
Sbjct: 139 SQLAPIDFFVSTVDPSKEPPLVTANTVLSILSVDYPVEKVSCYVSDDGAAMLTFEALSET 318
Query: 431 ASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKV 538
+ FA WVPFC+K N+EPR P+ YF K D K+KV
Sbjct: 319 SEFAKKWVPFCKKFNLEPRAPEWYFQQKIDYLKDKV 426
Score = 56.5 bits (117), Expect(2) = 7e-050
Identities = 20/39 (51%), Positives = 27/39 (69%)
Frame = +2 / +1
Query: 104 GMSVVCELWFGFSWLLDQLPKLCPVNRATDLAVLKDKFE 220
G+SV+CE+WF SW+LDQ PK P+ R T L L +F+
Sbjct: 7 GISVICEIWFAMSWILDQFPKWLPIERETYLDRLSLRFD 123
>gb|CW097123.1|CW097123 104_463_11002282_116_34345_045 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11002282, DNA
sequence
Length = 703
Score = 196 bits (423), Expect = 2e-049
Identities = 77/109 (70%), Positives = 91/109 (83%)
Frame = +2 / +3
Query: 317 TANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANMWVPFCRKHNIEPRNPD 496
TAN+ILSILAADYPVE+ +CY+SDD G LLT+EAMAEAA FA +WVPFCRKH IEPR P+
Sbjct: 6 TANSILSILAADYPVERNTCYLSDDSGMLLTYEAMAEAAKFATVWVPFCRKHGIEPRGPE 185
Query: 497 SYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRINGLPDSIRRRSDA 643
SYF LK PY + ++DFV DRRRV++EYDEFK RINGL I++RSDA
Sbjct: 186 SYFELKSHPYMGRSQEDFVNDRRRVRKEYDEFKARINGLEHDIKQRSDA 332
>gb|CX607503.1|CX607503 ANR1_29_C09.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_29_C09_A002 3', mRNA sequence
Length = 768
Score = 129 bits (277), Expect(2) = 8e-049
Identities = 50/72 (69%), Positives = 60/72 (83%)
Frame = +2 / +2
Query: 251 SDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEA 430
S L +D+FVST DP KEPPL+TANT+LSILA DYPV+K+SCYVSDDG A+LTFE+++E
Sbjct: 524 SQLAPIDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGSAMLTFESLSET 703
Query: 431 ASFANMWVPFCR 466
A FA WVPF R
Sbjct: 704 AEFARKWVPFVR 739
Score = 85.4 bits (180), Expect(2) = 8e-049
Identities = 32/73 (43%), Positives = 49/73 (67%)
Frame = +2 / +2
Query: 2 LSPYRLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVN 181
L+ YR++I++R+ +L F +R+ H +A LW +SV+CE+WF SWLLDQ PK P+N
Sbjct: 290 LNLYRIVIILRLIILCFFFQYRVSHPVNNAYGLWLVSVICEVWFALSWLLDQFPKWYPIN 469
Query: 182 RATDLAVLKDKFE 220
R T L L +++
Sbjct: 470 RETYLDRLALRYD 508
>gb|CL151474.1|CL151474 104_334_10779278_114_31361_062 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10779278, DNA
sequence
Length = 686
Score = 152 bits (326), Expect(2) = 9e-047
Identities = 55/89 (61%), Positives = 72/89 (80%)
Frame = +2 / -2
Query: 251 SDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEA 430
S+LPG+D+F++T DP EP L T N++LSILA DYPVEK +CY+SDDGG L+ +EAM +
Sbjct: 646 SNLPGIDVFLTTVDPVDEPILYTVNSVLSILATDYPVEKYACYLSDDGGTLVHYEAMLQV 467
Query: 431 ASFANMWVPFCRKHNIEPRNPDSYFNLKK 517
ASFA +W PFCRKH +EPR P+SYF +K+
Sbjct: 466 ASFAKLWAPFCRKHGVEPRAPESYFGVKR 380
Score = 56.1 bits (116), Expect(2) = 9e-047
Identities = 21/44 (47%), Positives = 32/44 (72%)
Frame = +2 / -2
Query: 512 KKDPYKNKVRQDFVKDRRRVKREYDEFKVRINGLPDSIRRRSDA 643
++ PY + ++F D RRV+REY+EFKVRI+ L +I +RS+A
Sbjct: 382 RRQPYTGSMPEEFTSDHRRVRREYEEFKVRIDSLFSTIYQRSEA 251
>gb|CW101099.1|CW101099 104_468_11004458_116_34399_003 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11004458, DNA
sequence
Length = 626
Score = 104 bits (222), Expect(2) = 4e-045
Identities = 39/71 (54%), Positives = 50/71 (70%)
Frame = +2 / +2
Query: 5 SPYRLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVNR 184
S YRLLI+IR+ + +F WRI+H D +W W MS+V ++WFGFSWLL+QLPK PV
Sbjct: 215 SCYRLLIIIRLIAVLVFFAWRIRHNKSDIMWFWTMSIVGDVWFGFSWLLNQLPKFNPVKT 394
Query: 185 ATDLAVLKDKF 217
DLA LK +F
Sbjct: 395 IPDLAALKQQF 427
Score = 98.2 bits (208), Expect(2) = 4e-045
Identities = 38/61 (62%), Positives = 49/61 (80%)
Frame = +2 / +2
Query: 245 GRSDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMA 424
G S LPG+D+FV+TADP EP L T N +LSILA DYPV++L+CY+SDD GAL+ +EA+
Sbjct: 440 GTSRLPGIDVFVTTADPIDEPILYTMNCVLSILAVDYPVDRLACYLSDDSGALILYEALV 619
Query: 425 E 427
E
Sbjct: 620 E 622
Score = 69.3 bits (145), Expect(2) = 2e-022
Identities = 30/69 (43%), Positives = 40/69 (57%)
Frame = -3 / -3
Query: 219 SNLSFRTARSVARFTGHSFGSWSSSHEKPNQSSQTTDMPQSQMASSFLCLILHVRNRPRT 40
+N R ARS TG +FGSW SHEKPNQ+S T D+ Q+ M S LCL+ H +
Sbjct: 429 ANCCLRAARSGMVLTGLNFGSWLRSHEKPNQTSPTMDIVQNHMISDLLCLMRHAKKTRTA 250
Query: 39 AMRIRMRSL 13
R+ + +L
Sbjct: 249 INRMMISNL 223
Score = 57.4 bits (119), Expect(2) = 2e-022
Identities = 31/52 (59%), Positives = 33/52 (63%)
Frame = -3 / -3
Query: 399 APPSSET*QESFSTG*SAARMDRIVFAVTSGGSFSGSAVDTNISSPGKSDRP 244
AP SSE *Q S STG*S ARM+R F V S GS GSAV T S PG + P
Sbjct: 594 APLSSER*QASLSTG*STARMERTQFMV*SMGSSMGSAVVTKTSMPGSLEVP 439
>gb|CW058702.1|CW058702 104_301_10518887_115_30164 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10518887, DNA
sequence
Length = 574
Score = 175 bits (376), Expect(2) = 6e-045
Identities = 68/103 (66%), Positives = 83/103 (80%)
Frame = +2 / +1
Query: 266 LDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFAN 445
+D FVST DP KEPPL+TANT+LSILA DYPVEK+SCYVSDDG A+LTFE++AE A FA
Sbjct: 1 VDFFVSTVDPLKEPPLITANTVLSILAVDYPVEKISCYVSDDGSAMLTFESLAETAEFAR 180
Query: 446 MWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVK 574
WVPFC+K+ IEPR P+ YF+ K D K+K+ FVK+RR +K
Sbjct: 181 KWVPFCKKYTIEPRAPEFYFSQKIDYLKDKIHPSFVKERRAMK 309
Score = 27.2 bits (53), Expect(2) = 6e-045
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +2 / +2
Query: 572 KREYDEFKVRINGL 613
+R+Y+E+KVRIN L
Sbjct: 404 QRDYEEYKVRINAL 445
>gb|BF586580.1|BF586580 FM1_29_A05.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 398
Score = 170 bits (365), Expect(2) = 5e-043
Identities = 66/99 (66%), Positives = 80/99 (80%)
Frame = +2 / +3
Query: 257 LPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAAS 436
L +D+FVST DP KEPPL+TANT+LSILA DYPV+K+SCYVSDDG A+LTFEA++E A
Sbjct: 102 LAPIDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAE 281
Query: 437 FANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFV 553
FA WVPFC+KHNIEPR P+ YF K D K+K++ FV
Sbjct: 282 FARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFV 398
Score = 25.8 bits (50), Expect(2) = 5e-043
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2 / +3
Query: 149 LDQLPKLCPVNRATDLAVLKDKFE 220
LDQ PK P+NR T L L +++
Sbjct: 9 LDQFPKWYPINRETYLDRLALRYD 80
>gb|CW171951.1|CW171951 104_583_11156017_148_36534_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11156017, DNA
sequence
Length = 588
Score = 175 bits (376), Expect = 7e-043
Identities = 69/74 (93%), Positives = 71/74 (95%)
Frame = +2 / -2
Query: 14 RLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVNRATD 193
RLLILIRM VL LFL WRIK+KNEDA+WLWGMSVVCELWFGFSWLLDQLPKLCPVNRATD
Sbjct: 224 RLLILIRMVVLALFLMWRIKNKNEDAMWLWGMSVVCELWFGFSWLLDQLPKLCPVNRATD 45
Query: 194 LAVLKDKFETPTPS 235
LAVLKDKFETPTPS
Sbjct: 44 LAVLKDKFETPTPS 3
Score = 161 bits (346), Expect = 1e-038
Identities = 68/74 (91%), Positives = 70/74 (94%)
Frame = -3 / +1
Query: 234 DGVGVSNLSFRTARSVARFTGHSFGSWSSSHEKPNQSSQTTDMPQSQMASSFLCLILHVR 55
DGVGVSNLSFRTARSVARFTGHSFGSWSSSHEKPNQSSQTTDMPQS +ASSFL LILH+R
Sbjct: 4 DGVGVSNLSFRTARSVARFTGHSFGSWSSSHEKPNQSSQTTDMPQSHIASSFLFLILHIR 183
Query: 54 NRPRTAMRIRMRSL 13
NR RT MRIRMRSL
Sbjct: 184 NRARTTMRIRMRSL 225
Score = 155 bits (332), Expect = 8e-037
Identities = 62/76 (81%), Positives = 67/76 (88%)
Frame = +1 / -1
Query: 10 IQASHSYPHGRPWSVPYMEN*AQE*GCHLALGHVCCLRTLVWFFMAARPAAKAVPCEPGH 189
+QASHSYPHGRP SVPY+EN* QE*GC++ALGHVCCL TLVW FMAA PAAKAVPCEP H
Sbjct: 228 LQASHSYPHGRPCSVPYVEN*EQE*GCNVALGHVCCL*TLVWLFMAA*PAAKAVPCEPSH 49
Query: 190 *PCRPERQV*DPNTVQ 237
PC PERQV*D NTV+
Sbjct: 48 RPCCPERQV*DSNTVE 1
Score = 151 bits (325), Expect = 8e-036
Identities = 61/73 (83%), Positives = 64/73 (87%)
Frame = -2 / +3
Query: 232 RCWGLKLVFQDGKVSGPVHRAQLWQLVEQP*KTKPEFADNRHAPEPNGILILVLNSPCKE 53
RCW LKLVFQD KV G VHRAQLWQLV+QP*K KPEF DNRHAPEP+ ILILVLNSP KE
Sbjct: 6 RCWSLKLVFQDSKVGGSVHRAQLWQLVKQP*KAKPEFTDNRHAPEPHCILILVLNSPHKE 185
Query: 52 QTKDGHADKNEKP 14
Q+KD HADKNEKP
Sbjct: 186 QSKDDHADKNEKP 224
Score = 150 bits (322), Expect = 2e-035
Identities = 62/74 (83%), Positives = 68/74 (91%)
Frame = -1 / +2
Query: 233 TVLGSQTCLSGRQGQWPGSQGTALAAGRAAMKNQTRVRRQQTCPRAKWHPHSCA*FSM*G 54
TVL SQTCLSG+QG+W GSQGTALAAG+AAMK+QTRV RQQTCPRA HPHSC+*FS *G
Sbjct: 5 TVLESQTCLSGQQGRWLGSQGTALAAGQAAMKSQTRVHRQQTCPRATLHPHSCS*FST*G 184
Query: 53 TDQGRPCG*E*EAC 12
T+QGRPCG*E*EAC
Sbjct: 185 TEQGRPCG*E*EAC 226
Score = 136 bits (292), Expect = 3e-031
Identities = 60/73 (82%), Positives = 61/73 (83%)
Frame = +3 / -3
Query: 15 GFSFLSAWPSLVCSLHGELSTRMRMPFGSGACLLSANSGLVFHGCSTSCQSCAL*TGPLT 194
GFSFLSAW SL+CSL GEL TRMRM GSGACLLS NSGL FHGC TSCQSCAL*T P T
Sbjct: 223 GFSFLSAWSSLLCSLCGELRTRMRMQCGSGACLLSVNSGLAFHGCLTSCQSCAL*TEPPT 44
Query: 195 LPS*KTSLRPQHR 233
L S*KTSLR QHR
Sbjct: 43 LLS*KTSLRLQHR 5
>gb|CW335960.1|CW335960 104_835_11483337_116_36094_045 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11483337, DNA
sequence
Length = 650
Score = 172 bits (370), Expect = 5e-042
Identities = 69/88 (78%), Positives = 76/88 (86%)
Frame = +2 / +3
Query: 380 VSDDGGALLTFEAMAEAASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKD 559
+SDDGGALLTFEAMAEA FA +WVPFCRKH+IEPRNPD+YFN K DP K K R DFVKD
Sbjct: 3 ISDDGGALLTFEAMAEACEFAKVWVPFCRKHSIEPRNPDAYFNQKGDPTKGKKRPDFVKD 182
Query: 560 RRRVKREYDEFKVRINGLPDSIRRRSDA 643
RR +KREYDEFKVRINGL D IRRR++A
Sbjct: 183 RRWIKREYDEFKVRINGLADLIRRRANA 266
>gb|CD425359.1|CD425359 SA1_11_F01.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_11_F01_A002 5', mRNA sequence
Length = 591
Score = 95.9 bits (203), Expect(2) = 3e-041
Identities = 35/73 (47%), Positives = 50/73 (68%)
Frame = +2 / +2
Query: 2 LSPYRLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVN 181
++PYR++I+IR+ VLG F +R+ H DA LW +SV+CE+WF SW+LDQ PK P+
Sbjct: 206 INPYRMIIIIRLVVLGFFFHYRVMHPVNDAFALWLISVICEIWFAMSWILDQFPKWSPIE 385
Query: 182 RATDLAVLKDKFE 220
R T L L +F+
Sbjct: 386 RETYLDRLSLRFD 424
Score = 94.1 bits (199), Expect(2) = 3e-041
Identities = 38/50 (76%), Positives = 42/50 (84%)
Frame = +2 / +2
Query: 251 SDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGA 400
S L +D FVST DP KEPPLVTANT+LSILA DYPV+K+SCYVSDDG A
Sbjct: 440 SQLAPIDFFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAA 589
>gb|BF655662.1|BF655662 FM1_47_C09.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 419
Score = 167 bits (359), Expect = 2e-040
Identities = 67/113 (59%), Positives = 82/113 (72%)
Frame = +2 / +2
Query: 251 SDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEA 430
S L +D FV T DP KEPPLVTANT+LSIL+ DYPV K+SCYVSDDG A+LTFEA++E
Sbjct: 80 SQLAPIDFFVITVDPSKEPPLVTANTVLSILSVDYPVTKVSCYVSDDGAAMLTFEALSET 259
Query: 431 ASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDE 589
+ FA WVPFC+K N+EPR + YF K K+KV FV++RR + EY E
Sbjct: 260 SEFAKKWVPFCKKFNLEPRATEWYFQXKIHYLKDKVAASFVRERRAMNTEYXE 418
>gb|CW502291.1|CW502291 fsbb001f298i22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f298i22, DNA
sequence
Length = 689
Score = 106 bits (226), Expect(2) = 2e-040
Identities = 41/57 (71%), Positives = 50/57 (87%)
Frame = +2 / +2
Query: 251 SDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAM 421
S L +D+FVST DP KEPPL+TANT+LSILA DYPV+K+SCYVSDDG A+LTFE++
Sbjct: 518 SQLAPIDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGSAMLTFESL 688
Score = 82.6 bits (174), Expect(2) = 2e-040
Identities = 31/65 (47%), Positives = 44/65 (67%)
Frame = +2 / +1
Query: 2 LSPYRLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVN 181
L+ YR++I++R+ +L F +R+ H +A LW +SV+CE WF SWLLDQ PK P+N
Sbjct: 190 LNLYRIVIILRLIILCFFFQYRVSHPVNNAYGLWLVSVICEGWFALSWLLDQFPKWYPIN 369
Query: 182 RATDL 196
R T L
Sbjct: 370 RETYL 384
>gb|CW305560.1|CW305560 104_790_11466376_116_37438_050 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11466376, DNA
sequence
Length = 581
Score = 111 bits (236), Expect(3) = 2e-039
Identities = 41/76 (53%), Positives = 55/76 (72%)
Frame = +2 / +3
Query: 293 PEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANMWVPFCRKH 472
P EP L T N++LSILA DYP+++ + Y+SDDGG+L+ +E + E A FA +W PFCRKH
Sbjct: 291 PVDEPVLCTMNSVLSILATDYPMDRHATYLSDDGGSLVHYEELLETAKFAALWTPFCRKH 470
Query: 473 NIEPRNPDSYFNLKKD 520
+EPR P+SYF D
Sbjct: 471 RVEPRAPESYFAATAD 518
Score = 50.6 bits (104), Expect(3) = 2e-039
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +2 / +2
Query: 107 MSVVCELWFGFSWLLDQLPKLCPVNRATDLAVLKDKFETPTPSNPTGRS 253
++VV + WF WLL+Q KL P+ R +LA+L F+ PT + +G S
Sbjct: 95 VTVVGDFWFALRWLLNQASKLNPIRRVPNLALLNQHFDPPTATPISGGS 241
Score = 40.0 bits (81), Expect(3) = 2e-039
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +2 / +1
Query: 14 RLLILIRMAVLGLFLTWRIKHKNEDAIWLW 103
RLL L RM V+ F WR H+N D++ LW
Sbjct: 1 RLLTLARMVVILQFFIWRFTHRNSDSMVLW 90
>gb|CW349154.1|CW349154 fsbb001f009n18k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f009n18, DNA
sequence
Length = 775
Score = 100 bits (212), Expect(2) = 1e-038
Identities = 36/72 (50%), Positives = 49/72 (68%)
Frame = +2 / -1
Query: 11 YRLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVNRAT 190
+R LILIR+ + LF+ WRIKH N D +W W SVV ++WF FSWLL Q+PK P+ R+
Sbjct: 367 HRTLILIRLIAVILFIGWRIKHNNSDVMWFWTTSVVADVWFAFSWLLYQMPKFNPIKRSP 188
Query: 191 DLAVLKDKFETP 226
DL L+ ++ P
Sbjct: 187 DLDALRQYYDLP 152
Score = 80.8 bits (170), Expect(2) = 1e-038
Identities = 31/51 (60%), Positives = 40/51 (78%)
Frame = +2 / -1
Query: 239 PTGRSDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDD 391
P G S LP +D+FV+TADP EP L T N+ILSILA DYP+++ +CY+SDD
Sbjct: 154 PDGDSILPAIDVFVTTADPIDEPVLYTMNSILSILAVDYPIDRYACYLSDD 2
>gb|BI075362.1|BI075362 IP1_19_F06.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 348
Score = 158 bits (339), Expect = 9e-038
Identities = 62/90 (68%), Positives = 73/90 (81%)
Frame = +2 / +3
Query: 251 SDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEA 430
S L +D FVST DP KEPPL+TANT+LSILA DYPVEK+SCYVSDDG A+LTFE++AE
Sbjct: 39 SGLAPVDFFVSTVDPLKEPPLITANTVLSILAVDYPVEKISCYVSDDGSAMLTFESLAET 218
Query: 431 ASFANMWVPFCRKHNIEPRNPDSYFNLKKD 520
A FA WVPFC+K+ IEPR P+ YF+ K D
Sbjct: 219 AEFARKWVPFCKKYTIEPRAPEFYFSQKID 308
>gb|CW370202.1|CW370202 fsbb001f044p22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f044p22, DNA
sequence
Length = 520
Score = 156 bits (335), Expect = 3e-037
Identities = 57/80 (71%), Positives = 71/80 (88%)
Frame = +2 / -1
Query: 2 LSPYRLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVN 181
+SPYR+ I+IRM VL +LTWR+++ N +A+WLWGMS+VCELWF FSWLLD LPK+ PVN
Sbjct: 241 ISPYRIFIVIRMFVLLFYLTWRVRNPNMEALWLWGMSIVCELWFAFSWLLDMLPKVNPVN 62
Query: 182 RATDLAVLKDKFETPTPSNP 241
R+TDLAVLK+KFETP+PSNP
Sbjct: 61 RSTDLAVLKEKFETPSPSNP 2
>gb|CX616423.1|CX616423 GABR1_27_G04.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_27_G04_A002 5', mRNA sequence
Length = 747
Score = 142 bits (305), Expect(2) = 9e-037
Identities = 59/117 (50%), Positives = 79/117 (67%)
Frame = +2 / +2
Query: 254 DLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAA 433
+LP +D+FV+TADP+ EPPLVT NT+LS+LA DYP KLSCYVSDDG + T A+ EAA
Sbjct: 389 ELPAVDMFVTTADPKLEPPLVTVNTVLSLLALDYPAGKLSCYVSDDGCSAATCYALREAA 568
Query: 434 SFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRI 604
FA +WVPFC KH ++ R P YF+ + + +F++ +K EY+E RI
Sbjct: 569 EFAKLWVPFCMKHGVKVRAPFVYFSERGGAAADDDDAEFLRAWTSMKNEYEELVRRI 739
Score = 32.2 bits (64), Expect(2) = 9e-037
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2 / +2
Query: 89 AIWLWGMSVVCELWFGFSWLLDQLPKLCPV 178
A W +++CE WF WLL+ K PV
Sbjct: 251 AAWCCVAALICEAWFTVVWLLNMNAKWNPV 340
>gb|CW378708.1|CW378708 fsbb001f057j16k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f057j16, DNA
sequence
Length = 661
Score = 90.4 bits (191), Expect(2) = 2e-036
Identities = 35/47 (74%), Positives = 41/47 (87%)
Frame = +2 / +2
Query: 251 SDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDD 391
S L +D+FVST DP KEPPL+TANT+LSILA DYPV+K+SCYVSDD
Sbjct: 521 SQLAPIDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDD 661
Score = 84.9 bits (179), Expect(2) = 2e-036
Identities = 31/65 (47%), Positives = 45/65 (69%)
Frame = +2 / +1
Query: 2 LSPYRLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVN 181
L+ YR++I++R+ +L F +R+ H +A LW +SV+CE+WF SWLLDQ PK P+N
Sbjct: 193 LNLYRIVIILRLIILCFFFQYRVSHPVNNAYGLWLVSVICEVWFALSWLLDQFPKWYPIN 372
Query: 182 RATDL 196
R T L
Sbjct: 373 RETYL 387
>gb|CW150095.1|CW150095 104_549_11142847_148_36304_026 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11142847, DNA
sequence
Length = 661
Score = 152 bits (326), Expect = 6e-036
Identities = 57/97 (58%), Positives = 76/97 (78%)
Frame = +2 / +2
Query: 350 DYPVEKLSCYVSDDGGALLTFEAMAEAASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYK 529
DYPV++L+CY+SDD GAL+ +EA+ E FA +WVPFCRK++IEPR P+SYF P
Sbjct: 5 DYPVDRLACYLSDDSGALILYEALVEVGKFAPLWVPFCRKYSIEPRAPESYFEHVAPPQA 184
Query: 530 NKVRQDFVKDRRRVKREYDEFKVRINGLPDSIRRRSD 640
+V Q+F+ D RRV+ EYDEFKVR++ LPD+IR+RSD
Sbjct: 185 GRVTQEFLNDYRRVQMEYDEFKVRLDILPDAIRKRSD 295
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 776,390,553
Number of Sequences: 832831
Number of extensions: 11218196
Number of successful extensions: 97961
Number of sequences better than 1.0e-020: 100
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 19263088593
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)