TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF36h01.yg.2.1
(689 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI141124.1|BI141124 IP1_43_D11.b1_A002 Immature pannicle... 459 e-128
gb|BG047859.1|BG047859 OV1_28_F10.b1_A002 Ovary 1 (OV1) Sor... 448 e-125
gb|AW564290.1|AW564290 LG1_289_B06.b1_A002 Light Grown 1 (L... 432 e-120
gb|CD220687.1|CD220687 CCC1_68_E02.g1_A007 Callus culture/c... 219 1e-077
gb|AW745058.1|AW745058 LG1_386_A11.b1_A002 Light Grown 1 (L... 281 8e-075
gb|CW347593.1|CW347593 fsbb001f007j03f0 Sorghum methylation... 250 2e-065
gb|BG054315.1|BG054315 OV2_1_B06.b1_A002 Ovary 2 (OV2) Sorg... 250 2e-065
gb|CW164355.1|CW164355 104_572_11151945_116_36461_041 Sorgh... 166 2e-064
gb|CW230233.1|CW230233 104_671_11207740_116_37270_002 Sorgh... 166 3e-059
gb|CD220536.1|CD220536 CCC1_67_H06.g1_A007 Callus culture/c... 166 1e-057
gb|BF481389.1|BF481389 FM1_18_E02.b1_A003 Floral-Induced Me... 224 1e-057
gb|CW459444.1|CW459444 fsbb001f206d04f0 Sorghum methylation... 138 5e-055
gb|BZ338704.1|BZ338704 ia97c08.g1 WGS-SbicolorF (JM107 adap... 149 5e-053
gb|CW485226.1|CW485226 fsbb001f247n08k0 Sorghum methylation... 189 3e-047
gb|CW230234.1|CW230234 104_671_11207740_148_37266_002 Sorgh... 98 5e-047
gb|BE357514.1|BE357514 DG1_20_G09.b2_A002 Dark Grown 1 (DG1... 172 5e-042
gb|BI098991.1|BI098991 IP1_36_A03.b1_A002 Immature pannicle... 172 5e-042
gb|CN134485.1|CN134485 OX1_26_D08.g1_A002 Oxidatively-stres... 163 3e-039
gb|CW278251.1|CW278251 104_752_11406451_116_35644_070 Sorgh... 158 7e-038
gb|CW143204.1|CW143204 104_534_11137288_148_34947_050 Sorgh... 134 3e-037
gb|CW143203.1|CW143203 104_534_11137288_116_34951_050 Sorgh... 133 1e-036
gb|CW269890.1|CW269890 104_741_11402081_116_35322_075 Sorgh... 149 3e-035
gb|CW163892.1|CW163892 104_571_11151698_148_36455_003 Sorgh... 100 2e-024
gb|CW361677.1|CW361677 fsbb001f030f23f0 Sorghum methylation... 81 1e-022
>gb|BI141124.1|BI141124 IP1_43_D11.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 582
Score = 459 bits (996), Expect = e-128
Identities = 185/194 (95%), Positives = 186/194 (95%)
Frame = -2 / +1
Query: 598 AXXXXAXXXXASIVFKDSKTYSDKLVKGAKALYKFGRLQRGRYSPNGSDQAIFYNSTSYW 419
A A ASIVFKDSKTYSDKLVKGAKALYKFGRLQRGRYSPNGSDQAIFYNSTSYW
Sbjct: 1 ARGMAAALAAASIVFKDSKTYSDKLVKGAKALYKFGRLQRGRYSPNGSDQAIFYNSTSYW 180
Query: 418 DEFVWGGAWMYFATGNNSYLTVATAPGMAKHAGAYWFGSPNYGVFTWDDKLPGAQVLLSR 239
DEFVWGGAWMYFATGNNSYLTVATAPGMAKHAGAYWFGSPNYGVFTWDDKLPGAQVLLSR
Sbjct: 181 DEFVWGGAWMYFATGNNSYLTVATAPGMAKHAGAYWFGSPNYGVFTWDDKLPGAQVLLSR 360
Query: 238 LRLFLSPGYPYEEILRTFHNQTDNVMCSYLPVFNSFNFTKGGLIQLNHGRPQPLQYAVNA 59
LRLFLSPGYPYEEILRTFHNQTDNVMCSYLP+FNSFNFTKGGLIQLNHGRPQPLQYAVNA
Sbjct: 361 LRLFLSPGYPYEEILRTFHNQTDNVMCSYLPLFNSFNFTKGGLIQLNHGRPQPLQYAVNA 540
Query: 58 AFLASLYSDYLEAA 17
AFLASLYSDYLEAA
Sbjct: 541 AFLASLYSDYLEAA 582
Score = 355 bits (770), Expect = 3e-097
Identities = 157/189 (83%), Positives = 159/189 (84%)
Frame = +3 / -2
Query: 18 AASR*SLYKEARKAALTAY*SG*GLPWLSCINPPLVKLNELNTGKYEHMTLSVWLWNVLS 197
AASR*SLYKEARKAALTAY*SG*GLPWLSCINPPLVKLNELN GKYEH+TLSVWLWNVLS
Sbjct: 581 AASR*SLYKEARKAALTAY*SG*GLPWLSCINPPLVKLNELNRGKYEHITLSVWLWNVLS 402
Query: 198 ISS*GYPGXXXXXXXXXXT*APGSLSSQVNTP*FGLPNQYAPACFAIPGAVATVRYELFP 377
ISS*GYPG T*APGSLSSQVNTP*FGLPNQ APACFAIPGAVATVRYELFP
Sbjct: 401 ISS*GYPGLRKSRSLLRRT*APGSLSSQVNTP*FGLPNQ*APACFAIPGAVATVRYELFP 222
Query: 378 VAKYIHAPPHTNSSQ*LVEL*KMAWSDPLGLYRPRCSLPNLYRALAPXXXXXXXXXXXXN 557
VAKYIHAPPHTNSSQ*LVEL*K+A SDPLGLYRPRCSLPNLYRA AP N
Sbjct: 221 VAKYIHAPPHTNSSQ*LVEL*KIA*SDPLGLYRPRCSLPNLYRAFAPLTSLSE*VLLSLN 42
Query: 558 TMEAXXXXA 584
TMEA A
Sbjct: 41 TMEAAARAA 15
Score = 334 bits (724), Expect = 8e-091
Identities = 141/182 (77%), Positives = 159/182 (87%)
Frame = +2 / -1
Query: 23 FKIVAV*RSKESCVDSVLKRLRPSMVELY*SSFGEVE*IEYR*IRAHDVVGLVVECPQYF 202
FKI+ V*RSKESC+DS+LK LRPSMVELY*SSF EVE*IE R*IRAH+VV LVVECPQYF
Sbjct: 576 FKIITV*RSKESCIDSILKWLRPSMVELY*SSFSEVE*IE*R*IRAHNVVSLVVECPQYF 397
Query: 203 FVRVPWT*EESQPAEKNLSSWKFVIPGKHSVVWTSKPVCSSVLRHSRGCGDGEVRVVPRG 382
FVRVPWT*EESQPAEK+LSSWKFVIPGK+S+VWTSKP+ SS+L HS GCGD E+ +VP G
Sbjct: 396 FVRVPWT*EESQPAEKDLSSWKFVIPGKYSIVWTSKPIGSSMLCHSWGCGDCEI*IVPCG 217
Query: 383 EVHPRTAPHELVPVAGGVVEDGLVRSVGAVSPTLQPAELVQGLGALDELVGVGLAVLEHY 562
EVHPRT PH+L+PVAGG+VE+ L+ S+GAVSP LQPA+ VQ DELV VG AVLEHY
Sbjct: 216 EVHPRTTPHKLIPVAGGIVENCLIGSIGAVSPALQPAKFVQSFCTFDELVRVGFAVLEHY 37
Query: 563 GS 568
GS
Sbjct: 36 GS 31
Score = 255 bits (552), Expect = 4e-067
Identities = 112/161 (69%), Positives = 121/161 (75%)
Frame = +1 / -3
Query: 22 LQDSRCIKKQGKLR*QRTEAVEAFHG*AVLILLW*S*MN*IQVNTST*RCRFGCGMSSVF 201
LQD+ CIKKQGKL *Q TE VEAFHG* VLILL *S*MN*I+VNTST*RC+FGCGMSSVF
Sbjct: 577 LQDNHCIKKQGKLH*QHTEVVEAFHG*VVLILL**S*MN*IEVNTST*RCQFGCGMSSVF 398
Query: 202 LRKGTLDLGRVAAC*EEPELLEVCHPR*TLRSLDFQTSMLQRASPFPGLWRR*GTSCXXX 381
LRKGTLDLGRVAAC*E PELLEVCHPR* L SLDFQT+ LQ A PF GLWR * +C
Sbjct: 397 LRKGTLDLGRVAAC*EGPELLEVCHPR*ILHSLDFQTNRLQHALPFLGLWRL*DMNCSLW 218
Query: 382 XXXXXXXXXXXXXXXXWSCRRWPGQIRWGCIAHAAACRTCT 504
W+CR+ P +I WGCIA AAAC+ CT
Sbjct: 217 RSTSTHHPTQTHPSSWWNCRKLPDRIHWGCIARAAACQICT 95
Score = 210 bits (454), Expect(3) = 3e-060
Identities = 92/128 (71%), Positives = 97/128 (75%)
Frame = -1 / +3
Query: 404 GRCVDVLRHGEQLVPHRRHSPGNGEARWSILVWKSKLRSVYLXXXXXXXXXXXXXXXTLP 225
G CVDVLRH EQ + H RHSP NG+A WS+LVWKSKL S+YL TLP
Sbjct: 195 GWCVDVLRHREQFISHSRHSPRNGKACWSLLVWKSKLWSIYLG*QTSRSSGPSQQAATLP 374
Query: 224 KSRVPLRRNTEDIPQPNRQRHVLVFTCIQFIQLHQRRINTAQPWKASTASVRCQRSFPCF 45
KSRVPLRRNTEDIPQPN QR+VLVFT IQFIQLH RRINT QPWKAST SV CQ SFPCF
Sbjct: 375 KSRVPLRRNTEDIPQPN*QRYVLVFTSIQFIQLH*RRINTTQPWKASTTSVCCQCSFPCF 554
Query: 44 FIQRLS*S 21
FIQ LS*S
Sbjct: 555 FIQ*LS*S 578
Score = 175 bits (377), Expect = 6e-043
Identities = 80/106 (75%), Positives = 82/106 (77%)
Frame = -3 / +2
Query: 339 EWRSTLEHTGLEVQTTECLPGMTNFQELRFFSAGCDSS*VQGTLTKKY*GHSTTKPTTSC 160
EW+S LE GLEVQT E LPGMTNFQELR FSAGCDSS*VQGTLTKKY*GHSTTK TT C
Sbjct: 260 EWQSMLEPIGLEVQTMEYLPGMTNFQELRSFSAGCDSS*VQGTLTKKY*GHSTTKLTTLC 439
Query: 159 ARIYLYSIHSTSPKED*YSSTMEGLNRFXXXXXXXXXXXXTATILK 22
ARIYLYSIHSTS KED*Y+STMEGLN F T ILK
Sbjct: 440 ARIYLYSIHSTSLKED*YNSTMEGLNHFSMLSMQLSLLLYTVIILK 577
Score = 31.3 bits (62), Expect(3) = 3e-060
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = -3 / +2
Query: 489 GCSVGDTAPTDLTRXXXXXXXXXXXXSCGAV 397
GCS GDTAP D R CG V
Sbjct: 110 GCSAGDTAPMDPIRQFSTIPPATGMSLCGVV 202
Score = 29.9 bits (59), Expect(3) = 3e-060
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -1 / +3
Query: 584 CXXXXSFHSVQGQQDLL 534
C SFHSVQGQQ+LL
Sbjct: 15 CRPGCSFHSVQGQQNLL 65
>gb|BG047859.1|BG047859 OV1_28_F10.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 539
Score = 448 bits (973), Expect = e-125
Identities = 178/179 (99%), Positives = 179/179 (100%)
Frame = -2 / +2
Query: 544 KTYSDKLVKGAKALYKFGRLQRGRYSPNGSDQAIFYNSTSYWDEFVWGGAWMYFATGNNS 365
KTYSDKLVKGAKALYKFGRLQRGRYSPNGSDQAIFYNSTSYWDEFVWGGAWMYFATGNNS
Sbjct: 2 KTYSDKLVKGAKALYKFGRLQRGRYSPNGSDQAIFYNSTSYWDEFVWGGAWMYFATGNNS 181
Query: 364 YLTVATAPGMAKHAGAYWFGSPNYGVFTWDDKLPGAQVLLSRLRLFLSPGYPYEEILRTF 185
YLTVATAPGMAKHAGAYWFGSPNYGVFTWDDKLPGAQVLLSRLRLFLSPGYPYEEILRTF
Sbjct: 182 YLTVATAPGMAKHAGAYWFGSPNYGVFTWDDKLPGAQVLLSRLRLFLSPGYPYEEILRTF 361
Query: 184 HNQTDNVMCSYLPVFNSFNFTKGGLIQLNHGRPQPLQYAVNAAFLASLYSDYLEAADTP 8
HNQTDNVMCSYLP+FNSFNFTKGGLIQLNHGRPQPLQYAVNAAFLASLYSDYLEAADTP
Sbjct: 362 HNQTDNVMCSYLPLFNSFNFTKGGLIQLNHGRPQPLQYAVNAAFLASLYSDYLEAADTP 538
Score = 354 bits (767), Expect = 9e-097
Identities = 154/170 (90%), Positives = 156/170 (91%)
Frame = +3 / -3
Query: 9 GVSAASR*SLYKEARKAALTAY*SG*GLPWLSCINPPLVKLNELNTGKYEHMTLSVWLWN 188
GVSAASR*SLYKEARKAALTAY*SG*GLPWLSCINPPLVKLNELN GKYEH+TLSVWLWN
Sbjct: 537 GVSAASR*SLYKEARKAALTAY*SG*GLPWLSCINPPLVKLNELNRGKYEHITLSVWLWN 358
Query: 189 VLSISS*GYPGXXXXXXXXXXT*APGSLSSQVNTP*FGLPNQYAPACFAIPGAVATVRYE 368
VLSISS*GYPG T*APGSLSSQVNTP*FGLPNQ APACFAIPGAVATVRYE
Sbjct: 357 VLSISS*GYPGLRKSRSLLRRT*APGSLSSQVNTP*FGLPNQ*APACFAIPGAVATVRYE 178
Query: 369 LFPVAKYIHAPPHTNSSQ*LVEL*KMAWSDPLGLYRPRCSLPNLYRALAP 518
LFPVAKYIHAPPHTNSSQ*LVEL*K+A SDPLGLYRPRCSLPNLYRA AP
Sbjct: 177 LFPVAKYIHAPPHTNSSQ*LVEL*KIA*SDPLGLYRPRCSLPNLYRAFAP 28
Score = 320 bits (694), Expect = 1e-086
Identities = 136/178 (76%), Positives = 154/178 (86%)
Frame = +2 / -2
Query: 8 RRVSRFKIVAV*RSKESCVDSVLKRLRPSMVELY*SSFGEVE*IEYR*IRAHDVVGLVVE 187
RRV FKI+ V*RSKESC+DS+LK LRPSMVELY*SSF EVE*IE R*IRAH+VV LVVE
Sbjct: 538 RRVCSFKIITV*RSKESCIDSILKWLRPSMVELY*SSFSEVE*IE*R*IRAHNVVSLVVE 359
Query: 188 CPQYFFVRVPWT*EESQPAEKNLSSWKFVIPGKHSVVWTSKPVCSSVLRHSRGCGDGEVR 367
CPQYFFVRVPWT*EESQPAEK+LSSWKFVIPGK+S+VWTSKP+ SS+L HS GCGD E+
Sbjct: 358 CPQYFFVRVPWT*EESQPAEKDLSSWKFVIPGKYSIVWTSKPIGSSMLCHSWGCGDCEI* 179
Query: 368 VVPRGEVHPRTAPHELVPVAGGVVEDGLVRSVGAVSPTLQPAELVQGLGALDELVGVG 541
+VP GEVHPRT PH+L+PVAGG+VE+ L+ S+GAVSP LQPA+ VQ DELV VG
Sbjct: 178 IVPCGEVHPRTTPHKLIPVAGGIVENCLIGSIGAVSPALQPAKFVQSFCTFDELVRVG 5
Score = 262 bits (567), Expect = 3e-069
Identities = 115/166 (69%), Positives = 124/166 (74%)
Frame = +1 / -1
Query: 7 QACQPLQDSRCIKKQGKLR*QRTEAVEAFHG*AVLILLW*S*MN*IQVNTST*RCRFGCG 186
QAC LQD+ CIKKQGKL *Q TE VEAFHG* VLILL *S*MN*I+VNTST*RC+FGCG
Sbjct: 539 QACLQLQDNHCIKKQGKLH*QHTEVVEAFHG*VVLILL**S*MN*IEVNTST*RCQFGCG 360
Query: 187 MSSVFLRKGTLDLGRVAAC*EEPELLEVCHPR*TLRSLDFQTSMLQRASPFPGLWRR*GT 366
MSSVFLRKGTLDLGRVAAC*E PELLEVCHPR* L SLDFQT+ LQ A PF GLWR *
Sbjct: 359 MSSVFLRKGTLDLGRVAAC*EGPELLEVCHPR*ILHSLDFQTNRLQHALPFLGLWRL*DM 180
Query: 367 SCXXXXXXXXXXXXXXXXXXXWSCRRWPGQIRWGCIAHAAACRTCT 504
+C W+CR+ P +I WGCIA AAAC+ CT
Sbjct: 179 NCSLWRSTSTHHPTQTHPSSWWNCRKLPDRIHWGCIARAAACQICT 42
Score = 213 bits (459), Expect(2) = 2e-057
Identities = 94/132 (71%), Positives = 99/132 (75%)
Frame = -1 / +1
Query: 404 GRCVDVLRHGEQLVPHRRHSPGNGEARWSILVWKSKLRSVYLXXXXXXXXXXXXXXXTLP 225
G CVDVLRH EQ + H RHSP NG+A WS+LVWKSKL S+YL TLP
Sbjct: 142 GWCVDVLRHREQFISHSRHSPRNGKACWSLLVWKSKLWSIYLG*QTSRSSGPSQQAATLP 321
Query: 224 KSRVPLRRNTEDIPQPNRQRHVLVFTCIQFIQLHQRRINTAQPWKASTASVRCQRSFPCF 45
KSRVPLRRNTEDIPQPN QR+VLVFT IQFIQLH RRINT QPWKAST SV CQ SFPCF
Sbjct: 322 KSRVPLRRNTEDIPQPN*QRYVLVFTSIQFIQLH*RRINTTQPWKASTTSVCCQCSFPCF 501
Query: 44 FIQRLS*SG*HA 9
FIQ LS*S HA
Sbjct: 502 FIQ*LS*SCRHA 537
Score = 180 bits (387), Expect = 2e-044
Identities = 83/111 (74%), Positives = 85/111 (76%)
Frame = -3 / +3
Query: 339 EWRSTLEHTGLEVQTTECLPGMTNFQELRFFSAGCDSS*VQGTLTKKY*GHSTTKPTTSC 160
EW+S LE GLEVQT E LPGMTNFQELR FSAGCDSS*VQGTLTKKY*GHSTTK TT C
Sbjct: 207 EWQSMLEPIGLEVQTMEYLPGMTNFQELRSFSAGCDSS*VQGTLTKKY*GHSTTKLTTLC 386
Query: 159 ARIYLYSIHSTSPKED*YSSTMEGLNRFXXXXXXXXXXXXTATILKRLTRL 7
ARIYLYSIHSTS KED*Y+STMEGLN F T ILK TRL
Sbjct: 387 ARIYLYSIHSTSLKED*YNSTMEGLNHFSMLSMQLSLLLYTVIILKLQTRL 539
Score = 31.3 bits (62), Expect(2) = 2e-057
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = -3 / +3
Query: 489 GCSVGDTAPTDLTRXXXXXXXXXXXXSCGAV 397
GCS GDTAP D R CG V
Sbjct: 57 GCSAGDTAPMDPIRQFSTIPPATGMSLCGVV 149
>gb|AW564290.1|AW564290 LG1_289_B06.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 592
Score = 432 bits (937), Expect = e-120
Identities = 172/187 (91%), Positives = 173/187 (92%)
Frame = -2 / +2
Query: 652 EXIDYXXXXXECHSCSDLAXXXXAXXXXASIVFKDSKTYSDKLVKGAKALYKFGRLQRGR 473
E IDY ECHSCSDLA A ASIVFKDSKTYSDKLVKGAKALYKFGRLQRGR
Sbjct: 32 EDIDYKRPVTECHSCSDLASEMAAALAAASIVFKDSKTYSDKLVKGAKALYKFGRLQRGR 211
Query: 472 YSPNGSDQAIFYNSTSYWDEFVWGGAWMYFATGNNSYLTVATAPGMAKHAGAYWFGSPNY 293
YSPNGSDQAIFYNSTSYWDEFVWGGAWMYFATGNNSYLTVATAPGMAKHAGAYWFGSPNY
Sbjct: 212 YSPNGSDQAIFYNSTSYWDEFVWGGAWMYFATGNNSYLTVATAPGMAKHAGAYWFGSPNY 391
Query: 292 GVFTWDDKLPGAQVLLSRLRLFLSPGYPYEEILRTFHNQTDNVMCSYLPVFNSFNFTKGG 113
GVFTWDDKLPGAQVLLSRLRLFLSPGYPYEEILRTFHNQTDNVMCSYLP+FNSFNFTKGG
Sbjct: 392 GVFTWDDKLPGAQVLLSRLRLFLSPGYPYEEILRTFHNQTDNVMCSYLPLFNSFNFTKGG 571
Query: 112 LIQLNHG 92
LIQLNHG
Sbjct: 572 LIQLNHG 592
Score = 326 bits (707), Expect = 2e-088
Identities = 144/187 (77%), Positives = 146/187 (78%)
Frame = +3 / -2
Query: 93 PWLSCINPPLVKLNELNTGKYEHMTLSVWLWNVLSISS*GYPGXXXXXXXXXXT*APGSL 272
PWLSCINPPLVKLNELN GKYEH+TLSVWLWNVLSISS*GYPG T*APGSL
Sbjct: 591 PWLSCINPPLVKLNELNRGKYEHITLSVWLWNVLSISS*GYPGLRKSRSLLRRT*APGSL 412
Query: 273 SSQVNTP*FGLPNQYAPACFAIPGAVATVRYELFPVAKYIHAPPHTNSSQ*LVEL*KMAW 452
SSQVNTP*FGLPNQ APACFAIPGAVATVRYELFPVAKYIHAPPHTNSSQ*LVEL*K+A
Sbjct: 411 SSQVNTP*FGLPNQ*APACFAIPGAVATVRYELFPVAKYIHAPPHTNSSQ*LVEL*KIA* 232
Query: 453 SDPLGLYRPRCSLPNLYRALAPXXXXXXXXXXXXNTMEAXXXXAXXXXARSEQEWHSXXX 632
SDPLGLYRPRCSLPNLYRA AP NTMEA A ARSEQE HS
Sbjct: 231 SDPLGLYRPRCSLPNLYRAFAPLTSLSE*VLLSLNTMEAAARAAAISDARSEQE*HSVTG 52
Query: 633 XX*SMXS 653
*SM S
Sbjct: 51 LL*SMSS 31
Score = 301 bits (651), Expect = 9e-081
Identities = 133/187 (71%), Positives = 149/187 (79%)
Frame = +2 / -1
Query: 92 SMVELY*SSFGEVE*IEYR*IRAHDVVGLVVECPQYFFVRVPWT*EESQPAEKNLSSWKF 271
SMVELY*SSF EVE*IE R*IRAH+VV LVVECPQYFFVRVPWT*EESQPAEK+LSSWKF
Sbjct: 592 SMVELY*SSFSEVE*IE*R*IRAHNVVSLVVECPQYFFVRVPWT*EESQPAEKDLSSWKF 413
Query: 272 VIPGKHSVVWTSKPVCSSVLRHSRGCGDGEVRVVPRGEVHPRTAPHELVPVAGGVVEDGL 451
VIPGK+S+VWTSKP+ SS+L HS GCGD E+ +VP GEVHPRT PH+L+PVAGG+VE+ L
Sbjct: 412 VIPGKYSIVWTSKPIGSSMLCHSWGCGDCEI*IVPCGEVHPRTTPHKLIPVAGGIVENCL 233
Query: 452 VRSVGAVSPTLQPAELVQGLGALDELVGVGLAVLEHYGSXXXXXXXXXR*I*AGVALXXX 631
+ S+GAVSP LQPA+ VQ DELV VG AVLEHYGS *I*A V L
Sbjct: 232 IGSIGAVSPALQPAKFVQSFCTFDELVRVGFAVLEHYGSCSQGGSHFRC*I*ARVTLSDW 53
Query: 632 XXVVDVL 652
V+DVL
Sbjct: 52 PFVIDVL 32
Score = 212 bits (458), Expect(2) = 8e-058
Identities = 93/137 (67%), Positives = 101/137 (73%)
Frame = +1 / -3
Query: 94 HG*AVLILLW*S*MN*IQVNTST*RCRFGCGMSSVFLRKGTLDLGRVAAC*EEPELLEVC 273
HG* VLILL *S*MN*I+VNTST*RC+FGCGMSSVFLRKGTLDLGRVAAC*E PELLEVC
Sbjct: 590 HG*VVLILL**S*MN*IEVNTST*RCQFGCGMSSVFLRKGTLDLGRVAAC*EGPELLEVC 411
Query: 274 HPR*TLRSLDFQTSMLQRASPFPGLWRR*GTSCXXXXXXXXXXXXXXXXXXXWSCRRWPG 453
HPR* L SLDFQT+ LQ A PF GLWR * +C W+CR+ P
Sbjct: 410 HPR*ILHSLDFQTNRLQHALPFLGLWRL*DMNCSLWRSTSTHHPTQTHPSSWWNCRKLPD 231
Query: 454 QIRWGCIAHAAACRTCT 504
+I WGCIA AAAC+ CT
Sbjct: 230 RIHWGCIARAAACQICT 180
Score = 169 bits (364), Expect(3) = 3e-053
Identities = 72/104 (69%), Positives = 77/104 (74%)
Frame = -1 / +1
Query: 404 GRCVDVLRHGEQLVPHRRHSPGNGEARWSILVWKSKLRSVYLXXXXXXXXXXXXXXXTLP 225
G CVDVLRH EQ + H RHSP NG+A WS+LVWKSKL S+YL TLP
Sbjct: 280 GWCVDVLRHREQFISHSRHSPRNGKACWSLLVWKSKLWSIYLG*QTSRSSGPSQQAATLP 459
Query: 224 KSRVPLRRNTEDIPQPNRQRHVLVFTCIQFIQLHQRRINTAQPW 93
KSRVPLRRNTEDIPQPN QR+VLVFT IQFIQLH RRINT QPW
Sbjct: 460 KSRVPLRRNTEDIPQPN*QRYVLVFTSIQFIQLH*RRINTTQPW 591
Score = 161 bits (347), Expect = 8e-039
Identities = 71/82 (86%), Positives = 73/82 (89%)
Frame = -3 / +3
Query: 339 EWRSTLEHTGLEVQTTECLPGMTNFQELRFFSAGCDSS*VQGTLTKKY*GHSTTKPTTSC 160
EW+S LE GLEVQT E LPGMTNFQELR FSAGCDSS*VQGTLTKKY*GHSTTK TT C
Sbjct: 345 EWQSMLEPIGLEVQTMEYLPGMTNFQELRSFSAGCDSS*VQGTLTKKY*GHSTTKLTTLC 524
Query: 159 ARIYLYSIHSTSPKED*YSSTM 94
ARIYLYSIHSTS KED*Y+STM
Sbjct: 525 ARIYLYSIHSTSLKED*YNSTM 590
Score = 47.8 bits (98), Expect(3) = 3e-053
Identities = 23/40 (57%), Positives = 25/40 (62%)
Frame = -1 / +1
Query: 653 RXHRLXXXXXXVPLLLRSSVXXXCXXXXSFHSVQGQQDLL 534
R HRL V LLLRSS+ C SFHSVQGQQ+LL
Sbjct: 31 RGHRLQKASH*VSLLLRSSI*NGCRPGCSFHSVQGQQNLL 150
Score = 32.7 bits (65), Expect(2) = 8e-058
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +1 / -3
Query: 556 TLWKLXXXXXXXXTLDLSRSGTXXXXXCSRCXL 654
TLWKL LDLS+S T C+RC L
Sbjct: 128 TLWKLQPGRQPFQMLDLSKSDTQ*LAFCNRCPL 30
Score = 31.3 bits (62), Expect(3) = 3e-053
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = -3 / +3
Query: 489 GCSVGDTAPTDLTRXXXXXXXXXXXXSCGAV 397
GCS GDTAP D R CG V
Sbjct: 195 GCSAGDTAPMDPIRQFSTIPPATGMSLCGVV 287
>gb|CD220687.1|CD220687 CCC1_68_E02.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_68_E02_A007 5', mRNA sequence
Length = 606
Score = 219 bits (473), Expect(2) = 1e-077
Identities = 84/104 (80%), Positives = 96/104 (92%)
Frame = -2 / +3
Query: 313 WFGSPNYGVFTWDDKLPGAQVLLSRLRLFLSPGYPYEEILRTFHNQTDNVMCSYLPVFNS 134
++G P+YGVF+WD+KL GAQVLLSRLRLFLSPGYPYEE+LR FHNQT +MCSYLP+F S
Sbjct: 117 FWGGPDYGVFSWDNKLTGAQVLLSRLRLFLSPGYPYEEMLRAFHNQTSIIMCSYLPIFKS 296
Query: 133 FNFTKGGLIQLNHGRPQPLQYAVNAAFLASLYSDYLEAADTPGW 2
FN T+GGLIQLNHG+PQPLQY VNAAFLAS++SDYLEAADTPGW
Sbjct: 297 FNRTRGGLIQLNHGKPQPLQYVVNAAFLASVFSDYLEAADTPGW 428
Score = 127 bits (271), Expect(2) = 9e-043
Identities = 61/104 (58%), Positives = 68/104 (65%)
Frame = +3 / -3
Query: 3 HPGVSAASR*SLYKEARKAALTAY*SG*GLPWLSCINPPLVKLNELNTGKYEHMTLSVWL 182
HPGVSAASR*SL EAR AALT Y* G G P + I PPLV L +L G+ EHM + VWL
Sbjct: 427 HPGVSAASR*SLNTEARNAALTTY*RGCGFP*FN*IKPPLVLLKDLKIGR*EHMIMLVWL 248
Query: 183 WNVLSISS*GYPGXXXXXXXXXXT*APGSLSSQVNTP*FGLPNQ 314
WN L+ISS GYPG T AP SL SQ+NTP* G P +
Sbjct: 247 WNALNISSYGYPGLKKSLNRLRRTCAPVSLLSQLNTP*SGPPQK 116
Score = 91.8 bits (194), Expect(2) = 1e-077
Identities = 32/42 (76%), Positives = 37/42 (88%)
Frame = -2 / +3
Query: 430 TSYWDEFVWGGAWMYFATGNNSYLTVATAPGMAKHAGAYWFG 305
TSYWDEFVWG +WMY ATGN+SYLT+AT P +AKHAGA+W G
Sbjct: 3 TSYWDEFVWGSSWMYLATGNSSYLTLATHPKLAKHAGAFWGG 128
Score = 68.0 bits (142), Expect(2) = 9e-043
Identities = 29/42 (69%), Positives = 32/42 (76%)
Frame = +3 / -3
Query: 306 PNQYAPACFAIPGAVATVRYELFPVAKYIHAPPHTNSSQ*LV 431
P Q APACFA G VA V+Y+ PVA+YIH PHTNSSQ*LV
Sbjct: 127 PPQKAPACFASLGCVARVKYDELPVARYIHELPHTNSSQ*LV 2
>gb|AW745058.1|AW745058 LG1_386_A11.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 628
Score = 281 bits (608), Expect = 8e-075
Identities = 111/125 (88%), Positives = 111/125 (88%)
Frame = -2 / +1
Query: 652 EXIDYXXXXXECHSCSDLAXXXXAXXXXASIVFKDSKTYSDKLVKGAKALYKFGRLQRGR 473
E IDY ECHSCSDLA A ASIVFKDSKTYSDKLVKGAKALYKFGRLQRGR
Sbjct: 253 EDIDYKRPVTECHSCSDLASEMAAALAAASIVFKDSKTYSDKLVKGAKALYKFGRLQRGR 432
Query: 472 YSPNGSDQAIFYNSTSYWDEFVWGGAWMYFATGNNSYLTVATAPGMAKHAGAYWFGSPNY 293
YSPNGSDQAIFYNSTSYWDEFVWGGAWMYFATGNNSYLTVATAPGMAKHAGAYWFGSPNY
Sbjct: 433 YSPNGSDQAIFYNSTSYWDEFVWGGAWMYFATGNNSYLTVATAPGMAKHAGAYWFGSPNY 612
Query: 292 GVFTW 278
GVFTW
Sbjct: 613 GVFTW 627
Score = 208 bits (448), Expect = 9e-053
Identities = 94/125 (75%), Positives = 95/125 (76%)
Frame = +3 / -3
Query: 279 QVNTP*FGLPNQYAPACFAIPGAVATVRYELFPVAKYIHAPPHTNSSQ*LVEL*KMAWSD 458
QVNTP*FGLPNQ APACFAIPGAVATVRYELFPVAKYIHAPPHTNSSQ*LVEL*K+A SD
Sbjct: 626 QVNTP*FGLPNQ*APACFAIPGAVATVRYELFPVAKYIHAPPHTNSSQ*LVEL*KIA*SD 447
Query: 459 PLGLYRPRCSLPNLYRALAPXXXXXXXXXXXXNTMEAXXXXAXXXXARSEQEWHSXXXXX 638
PLGLYRPRCSLPNLYRA AP NTMEA A ARSEQE HS
Sbjct: 446 PLGLYRPRCSLPNLYRAFAPLTSLSE*VLLSLNTMEAAARAAAISDARSEQE*HSVTGLL 267
Query: 639 *SMXS 653
*SM S
Sbjct: 266 *SMSS 252
Score = 174 bits (374), Expect = 1e-042
Identities = 76/125 (60%), Positives = 90/125 (72%)
Frame = +2 / -2
Query: 278 PGKHSVVWTSKPVCSSVLRHSRGCGDGEVRVVPRGEVHPRTAPHELVPVAGGVVEDGLVR 457
PGK+S+VWTSKP+ SS+L HS GCGD E+ +VP GEVHPRT PH+L+PVAGG+VE+ L+
Sbjct: 627 PGKYSIVWTSKPIGSSMLCHSWGCGDCEI*IVPCGEVHPRTTPHKLIPVAGGIVENCLIG 448
Query: 458 SVGAVSPTLQPAELVQGLGALDELVGVGLAVLEHYGSXXXXXXXXXR*I*AGVALXXXXX 637
S+GAVSP LQPA+ VQ DELV VG AVLEHYGS *I*A V L
Sbjct: 447 SIGAVSPALQPAKFVQSFCTFDELVRVGFAVLEHYGSCSQGGSHFRC*I*ARVTLSDWPF 268
Query: 638 VVDVL 652
V+DVL
Sbjct: 267 VIDVL 253
Score = 90.9 bits (192), Expect(2) = 9e-022
Identities = 37/76 (48%), Positives = 43/76 (56%)
Frame = +1 / -1
Query: 277 PR*TLRSLDFQTSMLQRASPFPGLWRR*GTSCXXXXXXXXXXXXXXXXXXXWSCRRWPGQ 456
PR* L SLDFQT+ LQ A PF GLWR * +C W+CR+ P +
Sbjct: 628 PR*ILHSLDFQTNRLQHALPFLGLWRL*DMNCSLWRSTSTHHPTQTHPSSWWNCRKLPDR 449
Query: 457 IRWGCIAHAAACRTCT 504
I WGCIA AAAC+ CT
Sbjct: 448 IHWGCIARAAACQICT 401
Score = 78.5 bits (165), Expect(3) = 2e-026
Identities = 30/42 (71%), Positives = 34/42 (80%)
Frame = -1 / +3
Query: 404 GRCVDVLRHGEQLVPHRRHSPGNGEARWSILVWKSKLRSVYL 279
G CVDVLRH EQ + H RHSP NG+A WS+LVWKSKL S+YL
Sbjct: 501 GWCVDVLRHREQFISHSRHSPRNGKACWSLLVWKSKLWSIYL 626
Score = 47.8 bits (98), Expect(3) = 2e-026
Identities = 23/40 (57%), Positives = 25/40 (62%)
Frame = -1 / +3
Query: 653 RXHRLXXXXXXVPLLLRSSVXXXCXXXXSFHSVQGQQDLL 534
R HRL V LLLRSS+ C SFHSVQGQQ+LL
Sbjct: 252 RGHRLQKASH*VSLLLRSSI*NGCRPGCSFHSVQGQQNLL 371
Score = 33.6 bits (67), Expect(2) = 9e-022
Identities = 17/44 (38%), Positives = 19/44 (43%)
Frame = +1 / -1
Query: 556 TLWKLXXXXXXXXTLDLSRSGTXXXXXCSRCXLXXXXXXXXXAD 687
TLWKL LDLS+S T C+RC L AD
Sbjct: 349 TLWKLQPGRQPFQMLDLSKSDTQ*LAFCNRCPLVSSSSNGH*AD 218
Score = 31.3 bits (62), Expect(3) = 2e-026
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = -3 / +2
Query: 489 GCSVGDTAPTDLTRXXXXXXXXXXXXSCGAV 397
GCS GDTAP D R CG V
Sbjct: 416 GCSAGDTAPMDPIRQFSTIPPATGMSLCGVV 508
>gb|CW347593.1|CW347593 fsbb001f007j03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f007j03, DNA
sequence
Length = 502
Score = 250 bits (540), Expect = 2e-065
Identities = 100/114 (87%), Positives = 100/114 (87%)
Frame = -2 / -1
Query: 652 EXIDYXXXXXECHSCSDLAXXXXAXXXXASIVFKDSKTYSDKLVKGAKALYKFGRLQRGR 473
E IDY ECHSCSDLA A ASIVFKDSKTYSDKLVKGAKALYKFGRLQRGR
Sbjct: 367 EDIDYKRPVTECHSCSDLASEMAAALAAASIVFKDSKTYSDKLVKGAKALYKFGRLQRGR 188
Query: 472 YSPNGSDQAIFYNSTSYWDEFVWGGAWMYFATGNNSYLTVATAPGMAKHAGAYW 311
YSPNGSDQAIFYNSTSYWDEFVWGGAWMYFATGNNSYLTVATAPGMAKHAGAYW
Sbjct: 187 YSPNGSDQAIFYNSTSYWDEFVWGGAWMYFATGNNSYLTVATAPGMAKHAGAYW 26
Score = 184 bits (397), Expect(2) = 3e-046
Identities = 84/115 (73%), Positives = 85/115 (73%)
Frame = +3 / +3
Query: 309 NQYAPACFAIPGAVATVRYELFPVAKYIHAPPHTNSSQ*LVEL*KMAWSDPLGLYRPRCS 488
NQ APACFAIPGAVATVRYELFPVAKYIHAPPHTNSSQ*LVEL*K+A SDPLGLYRPRCS
Sbjct: 24 NQ*APACFAIPGAVATVRYELFPVAKYIHAPPHTNSSQ*LVEL*KIA*SDPLGLYRPRCS 203
Query: 489 LPNLYRALAPXXXXXXXXXXXXNTMEAXXXXAXXXXARSEQEWHSXXXXX*SMXS 653
LPNLYRA AP NTMEA A ARSEQE HS *SM S
Sbjct: 204 LPNLYRAFAPLTSLSE*VLLSLNTMEAAARAAAISDARSEQE*HSVTGLL*SMSS 368
Score = 149 bits (319), Expect = 6e-035
Identities = 67/115 (58%), Positives = 80/115 (69%)
Frame = +2 / +2
Query: 308 KPVCSSVLRHSRGCGDGEVRVVPRGEVHPRTAPHELVPVAGGVVEDGLVRSVGAVSPTLQ 487
+P+ SS+L HS GCGD E+ +VP GEVHPRT PH+L+PVAGG+VE+ L+ S+GAVSP LQ
Sbjct: 23 QPIGSSMLCHSWGCGDCEI*IVPCGEVHPRTTPHKLIPVAGGIVENCLIGSIGAVSPALQ 202
Query: 488 PAELVQGLGALDELVGVGLAVLEHYGSXXXXXXXXXR*I*AGVALXXXXXVVDVL 652
PA+ VQ DELV VG AVLEHYGS *I*A V L V+DVL
Sbjct: 203 PAKFVQSFCTFDELVRVGFAVLEHYGSCSQGGSHFRC*I*ARVTLSDWPFVIDVL 367
Score = 22.1 bits (42), Expect(2) = 3e-046
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3 / +1
Query: 285 NTP*FGLP 308
NTP*FGLP
Sbjct: 1 NTP*FGLP 24
>gb|BG054315.1|BG054315 OV2_1_B06.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 438
Score = 250 bits (540), Expect = 2e-065
Identities = 100/114 (87%), Positives = 100/114 (87%)
Frame = -2 / +2
Query: 652 EXIDYXXXXXECHSCSDLAXXXXAXXXXASIVFKDSKTYSDKLVKGAKALYKFGRLQRGR 473
E IDY ECHSCSDLA A ASIVFKDSKTYSDKLVKGAKALYKFGRLQRGR
Sbjct: 95 EDIDYKRPVTECHSCSDLASEMAAALAAASIVFKDSKTYSDKLVKGAKALYKFGRLQRGR 274
Query: 472 YSPNGSDQAIFYNSTSYWDEFVWGGAWMYFATGNNSYLTVATAPGMAKHAGAYW 311
YSPNGSDQAIFYNSTSYWDEFVWGGAWMYFATGNNSYLTVATAPGMAKHAGAYW
Sbjct: 275 YSPNGSDQAIFYNSTSYWDEFVWGGAWMYFATGNNSYLTVATAPGMAKHAGAYW 436
Score = 184 bits (397), Expect = 1e-045
Identities = 84/115 (73%), Positives = 85/115 (73%)
Frame = +3 / -1
Query: 309 NQYAPACFAIPGAVATVRYELFPVAKYIHAPPHTNSSQ*LVEL*KMAWSDPLGLYRPRCS 488
NQ APACFAIPGAVATVRYELFPVAKYIHAPPHTNSSQ*LVEL*K+A SDPLGLYRPRCS
Sbjct: 438 NQ*APACFAIPGAVATVRYELFPVAKYIHAPPHTNSSQ*LVEL*KIA*SDPLGLYRPRCS 259
Query: 489 LPNLYRALAPXXXXXXXXXXXXNTMEAXXXXAXXXXARSEQEWHSXXXXX*SMXS 653
LPNLYRA AP NTMEA A ARSEQE HS *SM S
Sbjct: 258 LPNLYRAFAPLTSLSE*VLLSLNTMEAAARAAAISDARSEQE*HSVTGLL*SMSS 94
Score = 148 bits (318), Expect = 8e-035
Identities = 67/114 (58%), Positives = 79/114 (69%)
Frame = +2 / -3
Query: 311 PVCSSVLRHSRGCGDGEVRVVPRGEVHPRTAPHELVPVAGGVVEDGLVRSVGAVSPTLQP 490
P+ SS+L HS GCGD E+ +VP GEVHPRT PH+L+PVAGG+VE+ L+ S+GAVSP LQP
Sbjct: 436 PIGSSMLCHSWGCGDCEI*IVPCGEVHPRTTPHKLIPVAGGIVENCLIGSIGAVSPALQP 257
Query: 491 AELVQGLGALDELVGVGLAVLEHYGSXXXXXXXXXR*I*AGVALXXXXXVVDVL 652
A+ VQ DELV VG AVLEHYGS *I*A V L V+DVL
Sbjct: 256 AKFVQSFCTFDELVRVGFAVLEHYGSCSQGGSHFRC*I*ARVTLSDWPFVIDVL 95
>gb|CW164355.1|CW164355 104_572_11151945_116_36461_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11151945, DNA
sequence
Length = 766
Score = 166 bits (358), Expect(3) = 2e-064
Identities = 63/104 (60%), Positives = 80/104 (76%)
Frame = -2 / +1
Query: 313 WFGSPNYGVFTWDDKLPGAQVLLSRLRLFLSPGYPYEEILRTFHNQTDNVMCSYLPVFNS 134
+F ++ VF+WD+KLPGAQ+LLSRLR+FL+PGYPYEE L +HN T MC Y P F S
Sbjct: 253 FFNILDFSVFSWDNKLPGAQLLLSRLRMFLNPGYPYEESLIGYHNATSLNMCMYFPRFGS 432
Query: 133 FNFTKGGLIQLNHGRPQPLQYAVNAAFLASLYSDYLEAADTPGW 2
FNFTKGG+ NHG+ QPLQY V +F+A+LY+DY+EA + PGW
Sbjct: 433 FNFTKGGMALFNHGKGQPLQYVVANSFIAALYADYMEAVNVPGW 564
Score = 87.7 bits (185), Expect(3) = 4e-029
Identities = 47/96 (48%), Positives = 50/96 (52%)
Frame = +3 / -3
Query: 3 HPGVSAASR*SLYKEARKAALTAY*SG*GLPWLSCINPPLVKLNELNTGKYEHMTLSVWL 182
HPG AS *S A K T Y SG LPWL PPLVKL E GKY HM V L
Sbjct: 563 HPGTLTASM*SA*SAAMKELATTYCSGCPLPWLKSAIPPLVKLKEPKRGKYMHMLRLVAL 384
Query: 183 WNVLSISS*GYPGXXXXXXXXXXT*APGSLSSQVNT 290
W +S SS G PG + APGSL SQ+NT
Sbjct: 383 W*PMSDSSYG*PGLRNMRSRDSSSCAPGSLLSQLNT 276
Score = 83.1 bits (175), Expect(3) = 2e-064
Identities = 30/58 (51%), Positives = 42/58 (72%)
Frame = -2 / +1
Query: 484 QRGRYSPNGSDQAIFYNSTSYWDEFVWGGAWMYFATGNNSYLTVATAPGMAKHAGAYW 311
+R YS D +YNSTSYWDE++W AWMY+ATGN+SY++ AT P + K+A A++
Sbjct: 85 RRTPYSLRQPDIEYYYNSTSYWDEYMWSAAWMYYATGNSSYISFATDPRLPKNAKAFF 258
Score = 50.6 bits (104), Expect(3) = 4e-029
Identities = 23/38 (60%), Positives = 25/38 (65%)
Frame = +2 / -2
Query: 326 VLRHSRGCGDGEVRVVPRGEVHPRTAPHELVPVAGGVV 439
VL R G+ +V V R VHPR APH LVPVAGGVV
Sbjct: 243 VLGQPRVGGEADVAAVARRVVHPRRAPHVLVPVAGGVV 130
Score = 36.3 bits (73), Expect(3) = 2e-064
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = -2 / +1
Query: 562 IVFKDSKTYSDKLVKGAKALYKFGR 488
IVF+D+ YS KL +GA +YKF R
Sbjct: 1 IVFRDTAAYSKKLSQGAATVYKFAR 75
Score = 29.0 bits (57), Expect(3) = 4e-029
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2 / -2
Query: 473 SPTLQPAELVQGLGALDELVGVGLAVLEH 559
+P P ELV AL +L+GVG V EH
Sbjct: 90 APPRLPRELVHRRRALAQLLGVGGGVAEH 4
>gb|CW230233.1|CW230233 104_671_11207740_116_37270_002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11207740, DNA
sequence
Length = 712
Score = 166 bits (358), Expect(2) = 3e-059
Identities = 63/104 (60%), Positives = 80/104 (76%)
Frame = -2 / -3
Query: 313 WFGSPNYGVFTWDDKLPGAQVLLSRLRLFLSPGYPYEEILRTFHNQTDNVMCSYLPVFNS 134
+F ++ VF+WD+KLPGAQ+LLSRLR+FL+PGYPYEE L +HN T MC Y P F S
Sbjct: 473 FFNILDFSVFSWDNKLPGAQLLLSRLRMFLNPGYPYEESLIGYHNATSLNMCMYFPRFGS 294
Query: 133 FNFTKGGLIQLNHGRPQPLQYAVNAAFLASLYSDYLEAADTPGW 2
FNFTKGG+ NHG+ QPLQY V +F+A+LY+DY+EA + PGW
Sbjct: 293 FNFTKGGMALFNHGKGQPLQYVVANSFIAALYADYMEAVNVPGW 162
Score = 87.7 bits (185), Expect(3) = 2e-027
Identities = 47/96 (48%), Positives = 50/96 (52%)
Frame = +3 / +1
Query: 3 HPGVSAASR*SLYKEARKAALTAY*SG*GLPWLSCINPPLVKLNELNTGKYEHMTLSVWL 182
HPG AS *S A K T Y SG LPWL PPLVKL E GKY HM V L
Sbjct: 163 HPGTLTASM*SA*SAAMKELATTYCSGCPLPWLKSAIPPLVKLKEPKRGKYMHMLRLVAL 342
Query: 183 WNVLSISS*GYPGXXXXXXXXXXT*APGSLSSQVNT 290
W +S SS G PG + APGSL SQ+NT
Sbjct: 343 W*PMSDSSYG*PGLRNMRSRDSSSCAPGSLLSQLNT 450
Score = 83.1 bits (175), Expect(2) = 3e-059
Identities = 30/58 (51%), Positives = 42/58 (72%)
Frame = -2 / -3
Query: 484 QRGRYSPNGSDQAIFYNSTSYWDEFVWGGAWMYFATGNNSYLTVATAPGMAKHAGAYW 311
+R YS D +YNSTSYWDE++W AWMY+ATGN+SY++ AT P + K+A A++
Sbjct: 641 RRTPYSLRQPDIEYYYNSTSYWDEYMWSAAWMYYATGNSSYISFATDPRLPKNAKAFF 468
Score = 50.6 bits (104), Expect(3) = 2e-027
Identities = 23/38 (60%), Positives = 25/38 (65%)
Frame = +2 / +3
Query: 326 VLRHSRGCGDGEVRVVPRGEVHPRTAPHELVPVAGGVV 439
VL R G+ +V V R VHPR APH LVPVAGGVV
Sbjct: 483 VLGQPRVGGEADVAAVARRVVHPRRAPHVLVPVAGGVV 596
Score = 23.5 bits (45), Expect(3) = 2e-027
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2 / +3
Query: 473 SPTLQPAELVQGLGALDELVGVG 541
+P P ELV AL +L+GVG
Sbjct: 636 APPRLPRELVHRRRALAQLLGVG 704
>gb|CD220536.1|CD220536 CCC1_67_H06.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_67_H06_A007 5', mRNA sequence
Length = 645
Score = 166 bits (358), Expect(2) = 1e-057
Identities = 63/104 (60%), Positives = 80/104 (76%)
Frame = -2 / +2
Query: 313 WFGSPNYGVFTWDDKLPGAQVLLSRLRLFLSPGYPYEEILRTFHNQTDNVMCSYLPVFNS 134
+F ++ VF+WD+KLPGAQ+LLSRLR+FL+PGYPYEE L +HN T MC Y P F S
Sbjct: 125 FFNILDFSVFSWDNKLPGAQLLLSRLRMFLNPGYPYEESLIGYHNATSLNMCMYFPRFGS 304
Query: 133 FNFTKGGLIQLNHGRPQPLQYAVNAAFLASLYSDYLEAADTPGW 2
FNFTKGG+ NHG+ QPLQY V +F+A+LY+DY+EA + PGW
Sbjct: 305 FNFTKGGMALFNHGKGQPLQYVVANSFIAALYADYMEAVNVPGW 436
Score = 87.7 bits (185), Expect(2) = 8e-026
Identities = 47/96 (48%), Positives = 50/96 (52%)
Frame = +3 / -1
Query: 3 HPGVSAASR*SLYKEARKAALTAY*SG*GLPWLSCINPPLVKLNELNTGKYEHMTLSVWL 182
HPG AS *S A K T Y SG LPWL PPLVKL E GKY HM V L
Sbjct: 435 HPGTLTASM*SA*SAAMKELATTYCSGCPLPWLKSAIPPLVKLKEPKRGKYMHMLRLVAL 256
Query: 183 WNVLSISS*GYPGXXXXXXXXXXT*APGSLSSQVNT 290
W +S SS G PG + APGSL SQ+NT
Sbjct: 255 W*PMSDSSYG*PGLRNMRSRDSSSCAPGSLLSQLNT 148
Score = 78.0 bits (164), Expect(2) = 1e-057
Identities = 26/43 (60%), Positives = 36/43 (83%)
Frame = -2 / +2
Query: 439 YNSTSYWDEFVWGGAWMYFATGNNSYLTVATAPGMAKHAGAYW 311
YNSTSYWDE++W AWMY+ATGN+SY++ AT P + K+A A++
Sbjct: 2 YNSTSYWDEYMWSAAWMYYATGNSSYISFATDPRLPKNAKAFF 130
Score = 50.6 bits (104), Expect(2) = 8e-026
Identities = 23/38 (60%), Positives = 25/38 (65%)
Frame = +2 / -3
Query: 326 VLRHSRGCGDGEVRVVPRGEVHPRTAPHELVPVAGGVV 439
VL R G+ +V V R VHPR APH LVPVAGGVV
Sbjct: 115 VLGQPRVGGEADVAAVARRVVHPRRAPHVLVPVAGGVV 2
>gb|BF481389.1|BF481389 FM1_18_E02.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 532
Score = 224 bits (483), Expect = 1e-057
Identities = 90/91 (98%), Positives = 91/91 (100%)
Frame = -2 / +1
Query: 274 DKLPGAQVLLSRLRLFLSPGYPYEEILRTFHNQTDNVMCSYLPVFNSFNFTKGGLIQLNH 95
DKLPGAQVLLSRLRLFLSPGYPYEEILRTFHNQTDNVMCSYLP+FNSFNFTKGGLIQLNH
Sbjct: 10 DKLPGAQVLLSRLRLFLSPGYPYEEILRTFHNQTDNVMCSYLPLFNSFNFTKGGLIQLNH 189
Query: 94 GRPQPLQYAVNAAFLASLYSDYLEAADTPGW 2
GRPQPLQYAVNAAFLASLYSDYLEAADTPGW
Sbjct: 190 GRPQPLQYAVNAAFLASLYSDYLEAADTPGW 282
Score = 182 bits (392), Expect = 5e-045
Identities = 79/91 (86%), Positives = 84/91 (92%)
Frame = +2 / -2
Query: 2 PPRRVSRFKIVAV*RSKESCVDSVLKRLRPSMVELY*SSFGEVE*IEYR*IRAHDVVGLV 181
PPRRV FKI+ V*RSKESC+DS+LK LRPSMVELY*SSF EVE*IE R*IRAH+VV LV
Sbjct: 282 PPRRVCSFKIITV*RSKESCIDSILKWLRPSMVELY*SSFSEVE*IE*R*IRAHNVVSLV 103
Query: 182 VECPQYFFVRVPWT*EESQPAEKNLSSWKFV 274
VECPQYFFVRVPWT*EESQPAEK+LSSWKFV
Sbjct: 102 VECPQYFFVRVPWT*EESQPAEKDLSSWKFV 10
Score = 182 bits (391), Expect = 7e-045
Identities = 79/91 (86%), Positives = 80/91 (87%)
Frame = +3 / -3
Query: 3 HPGVSAASR*SLYKEARKAALTAY*SG*GLPWLSCINPPLVKLNELNTGKYEHMTLSVWL 182
HPGVSAASR*SLYKEARKAALTAY*SG*GLPWLSCINPPLVKLNELN GKYEH+TLSVWL
Sbjct: 281 HPGVSAASR*SLYKEARKAALTAY*SG*GLPWLSCINPPLVKLNELNRGKYEHITLSVWL 102
Query: 183 WNVLSISS*GYPGXXXXXXXXXXT*APGSLS 275
WNVLSISS*GYPG T*APGSLS
Sbjct: 101 WNVLSISS*GYPGLRKSRSLLRRT*APGSLS 9
Score = 179 bits (385), Expect = 4e-044
Identities = 80/92 (86%), Positives = 83/92 (90%)
Frame = +1 / -1
Query: 1 TTQACQPLQDSRCIKKQGKLR*QRTEAVEAFHG*AVLILLW*S*MN*IQVNTST*RCRFG 180
TTQAC LQD+ CIKKQGKL *Q TE VEAFHG* VLILL *S*MN*I+VNTST*RC+FG
Sbjct: 283 TTQACLQLQDNHCIKKQGKLH*QHTEVVEAFHG*VVLILL**S*MN*IEVNTST*RCQFG 104
Query: 181 CGMSSVFLRKGTLDLGRVAAC*EEPELLEVCH 276
CGMSSVFLRKGTLDLGRVAAC*E PELLEVCH
Sbjct: 103 CGMSSVFLRKGTLDLGRVAAC*EGPELLEVCH 8
Score = 149 bits (321), Expect = 3e-035
Identities = 65/76 (85%), Positives = 66/76 (86%)
Frame = -1 / +3
Query: 230 LPKSRVPLRRNTEDIPQPNRQRHVLVFTCIQFIQLHQRRINTAQPWKASTASVRCQRSFP 51
LPKSRVPLRRNTEDIPQPN QR+VLVFT IQFIQLH RRINT QPWKAST SV CQ SFP
Sbjct: 54 LPKSRVPLRRNTEDIPQPN*QRYVLVFTSIQFIQLH*RRINTTQPWKASTTSVCCQCSFP 233
Query: 50 CFFIQRLS*SG*HAWV 3
CFFIQ LS*S HAWV
Sbjct: 234 CFFIQ*LS*SCRHAWV 281
Score = 149 bits (321), Expect = 3e-035
Identities = 69/92 (75%), Positives = 71/92 (77%)
Frame = -3 / +2
Query: 276 MTNFQELRFFSAGCDSS*VQGTLTKKY*GHSTTKPTTSCARIYLYSIHSTSPKED*YSST 97
+TNFQELR FSAGCDSS*VQGTLTKKY*GHSTTK TT CARIYLYSIHSTS KED*Y+ST
Sbjct: 8 VTNFQELRSFSAGCDSS*VQGTLTKKY*GHSTTKLTTLCARIYLYSIHSTSLKED*YNST 187
Query: 96 MEGLNRFXXXXXXXXXXXXTATILKRLTRLGG 1
MEGLN F T ILK TRLGG
Sbjct: 188 MEGLNHFSMLSMQLSLLLYTVIILKLQTRLGG 283
>gb|CW459444.1|CW459444 fsbb001f206d04f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f206d04, DNA
sequence
Length = 516
Score = 138 bits (297), Expect(3) = 5e-055
Identities = 54/90 (60%), Positives = 68/90 (75%)
Frame = -2 / -1
Query: 313 WFGSPNYGVFTWDDKLPGAQVLLSRLRLFLSPGYPYEEILRTFHNQTDNVMCSYLPVFNS 134
+F ++ VF+WD+KLPGAQ+LLSRLR+FL+PGYPYEE L +HN T MC Y P F S
Sbjct: 270 FFNILDFSVFSWDNKLPGAQLLLSRLRMFLNPGYPYEESLIGYHNATSLNMCMYFPRFGS 91
Query: 133 FNFTKGGLIQLNHGRPQPLQYAVNAAFLAS 44
FNFTKGG+ NHG+ QPLQY V +F+A+
Sbjct: 90 FNFTKGGMALFNHGKGQPLQYVVANSFIAA 1
Score = 83.1 bits (175), Expect(3) = 5e-055
Identities = 30/58 (51%), Positives = 42/58 (72%)
Frame = -2 / -1
Query: 484 QRGRYSPNGSDQAIFYNSTSYWDEFVWGGAWMYFATGNNSYLTVATAPGMAKHAGAYW 311
+R YS D +YNSTSYWDE++W AWMY+ATGN+SY++ AT P + K+A A++
Sbjct: 438 RRTPYSLRQPDIEYYYNSTSYWDEYMWSAAWMYYATGNSSYISFATDPRLPKNAKAFF 265
Score = 76.2 bits (160), Expect(2) = 2e-022
Identities = 40/81 (49%), Positives = 43/81 (53%)
Frame = +3 / +2
Query: 48 ARKAALTAY*SG*GLPWLSCINPPLVKLNELNTGKYEHMTLSVWLWNVLSISS*GYPGXX 227
A K T Y SG LPWL PPLVKL E GKY HM V LW +S SS G PG
Sbjct: 5 AMKELATTYCSGCPLPWLKSAIPPLVKLKEPKRGKYMHMLRLVALW*PMSDSSYG*PGLR 184
Query: 228 XXXXXXXXT*APGSLSSQVNT 290
+ APGSL SQ+NT
Sbjct: 185 NMRSRDSSSCAPGSLLSQLNT 247
Score = 50.6 bits (104), Expect(2) = 2e-022
Identities = 23/38 (60%), Positives = 25/38 (65%)
Frame = +2 / +1
Query: 326 VLRHSRGCGDGEVRVVPRGEVHPRTAPHELVPVAGGVV 439
VL R G+ +V V R VHPR APH LVPVAGGVV
Sbjct: 280 VLGQPRVGGEADVAAVARRVVHPRRAPHVLVPVAGGVV 393
Score = 32.7 bits (65), Expect(3) = 5e-055
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2 / -1
Query: 556 FKDSKTYSDKLVKGAKALYKFGR 488
F+D+ YS KL +GA +YKF R
Sbjct: 516 FRDTAAYSKKLSQGAATVYKFAR 448
>gb|BZ338704.1|BZ338704 ia97c08.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ia97c08 5', DNA sequence
Length = 661
Score = 149 bits (321), Expect(2) = 5e-053
Identities = 57/96 (59%), Positives = 74/96 (77%)
Frame = -2 / -3
Query: 289 VFTWDDKLPGAQVLLSRLRLFLSPGYPYEEILRTFHNQTDNVMCSYLPVFNSFNFTKGGL 110
VF+WD+KLPGA +LLSRLR+FL+PGYPYE+ L +H ++ MC Y F +FNFT+GGL
Sbjct: 485 VFSWDNKLPGAGLLLSRLRMFLNPGYPYEQSLVGYHKESRLDMCKYFRRFGAFNFTRGGL 306
Query: 109 IQLNHGRPQPLQYAVNAAFLASLYSDYLEAADTPGW 2
NHGR QPLQY V +FLA+L++DY+EA + PGW
Sbjct: 305 ALFNHGRGQPLQYVVANSFLAALFADYMEAINVPGW 198
Score = 81.7 bits (172), Expect(2) = 3e-024
Identities = 44/96 (45%), Positives = 49/96 (51%)
Frame = +3 / +1
Query: 3 HPGVSAASR*SLYKEARKAALTAY*SG*GLPWLSCINPPLVKLNELNTGKYEHMTLSVWL 182
HPG AS *S + ARK T Y SG LPWL +PPLVKL KY HM+ + L
Sbjct: 199 HPGTLIASM*SAKRAARKELATTYCSGCPLPWLKSASPPLVKLKAPKRRKYLHMSKRLSL 378
Query: 183 WNVLSISS*GYPGXXXXXXXXXXT*APGSLSSQVNT 290
W S*G PG APGSL SQ+NT
Sbjct: 379 W*PTRDCS*G*PGLRNMRSRDRSRPAPGSLLSQLNT 486
Score = 79.4 bits (167), Expect(2) = 5e-053
Identities = 27/43 (62%), Positives = 35/43 (81%)
Frame = -2 / -3
Query: 442 FYNSTSYWDEFVWGGAWMYFATGNNSYLTVATAPGMAKHAGAY 314
FYNSTSYWDE+VWG AW+Y+ATGN +YL+ A P +A+ A A+
Sbjct: 635 FYNSTSYWDEYVWGAAWVYYATGNTTYLSFAADPQLAERAKAF 507
Score = 51.0 bits (105), Expect(2) = 3e-024
Identities = 24/42 (57%), Positives = 26/42 (61%)
Frame = +2 / +3
Query: 317 CSSVLRHSRGCGDGEVRVVPRGEVHPRTAPHELVPVAGGVVE 442
C L R G+ +V V RG VHPR AP LVPVAGGVVE
Sbjct: 510 CLGALGELRVGGEAQVGGVARGVVHPRGAPDVLVPVAGGVVE 635
>gb|CW485226.1|CW485226 fsbb001f247n08k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f247n08, DNA
sequence
Length = 740
Score = 189 bits (408), Expect = 3e-047
Identities = 75/116 (64%), Positives = 85/116 (73%)
Frame = -2 / -3
Query: 652 EXIDYXXXXXECHSCSDLAXXXXAXXXXASIVFKDSKTYSDKLVKGAKALYKFGRLQRGR 473
E IDY ECH+CSDLA A ASIVFKD+K YS KLV GA L++F R +RGR
Sbjct: 366 EDIDYPRPVVECHACSDLAAEMAAALAAASIVFKDNKAYSQKLVHGATTLFQFARERRGR 187
Query: 472 YSPNGSDQAIFYNSTSYWDEFVWGGAWMYFATGNNSYLTVATAPGMAKHAGAYWFG 305
YS GSD FYNSTSYWDEFVWG +WMY ATGN+SYLT+AT P +AKHAGA+W G
Sbjct: 186 YSAGGSDATKFYNSTSYWDEFVWGSSWMYLATGNSSYLTLATHPKLAKHAGAFWGG 19
Score = 124 bits (266), Expect = 1e-027
Identities = 60/116 (51%), Positives = 67/116 (57%)
Frame = +3 / +2
Query: 306 PNQYAPACFAIPGAVATVRYELFPVAKYIHAPPHTNSSQ*LVEL*KMAWSDPLGLYRPRC 485
P Q APACFA G VA V+Y+ PVA+YIH PHTNSSQ*LVEL* S+P LY PR
Sbjct: 20 PPQKAPACFASLGCVARVKYDELPVARYIHELPHTNSSQ*LVEL*NFVASEPPALYLPRR 199
Query: 486 SLPNLYRALAPXXXXXXXXXXXXNTMEAXXXXAXXXXARSEQEWHSXXXXX*SMXS 653
SL N R +AP NT++A A ARSEQ WHS *SM S
Sbjct: 200 SLANWKRVVAPCTSFCE*ALLSLNTIDAAANAAAISAARSEQAWHSTTGRG*SMSS 367
>gb|CW230234.1|CW230234 104_671_11207740_148_37266_002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11207740, DNA
sequence
Length = 650
Score = 98.2 bits (208), Expect(3) = 5e-047
Identities = 38/62 (61%), Positives = 47/62 (75%)
Frame = -2 / +2
Query: 313 WFGSPNYGVFTWDDKLPGAQVLLSRLRLFLSPGYPYEEILRTFHNQTDNVMCSYLPVFNS 134
+F ++ VF+WD+KLPGAQ+LLSRLR+FL+PGYPYEE L +HN T MC Y P F S
Sbjct: 464 FFNILDFSVFSWDNKLPGAQLLLSRLRMFLNPGYPYEESLIGYHNATSLNMCMYFPRFGS 643
Query: 133 FN 128
FN
Sbjct: 644 FN 649
Score = 83.1 bits (175), Expect(3) = 5e-047
Identities = 30/58 (51%), Positives = 42/58 (72%)
Frame = -2 / +2
Query: 484 QRGRYSPNGSDQAIFYNSTSYWDEFVWGGAWMYFATGNNSYLTVATAPGMAKHAGAYW 311
+R YS D +YNSTSYWDE++W AWMY+ATGN+SY++ AT P + K+A A++
Sbjct: 296 RRTPYSLRQPDIEYYYNSTSYWDEYMWSAAWMYYATGNSSYISFATDPRLPKNAKAFF 469
Score = 46.4 bits (95), Expect(3) = 5e-047
Identities = 22/55 (40%), Positives = 27/55 (49%)
Frame = -2 / +2
Query: 652 EXIDYXXXXXECHSCSDLAXXXXAXXXXASIVFKDSKTYSDKLVKGAKALYKFGR 488
E + Y S DL A ASIVF+D+ YS KL +GA +YKF R
Sbjct: 122 EDMAYPRPSVSVGSAPDLGGEVAAALAAASIVFRDTAAYSKKLSQGAATVYKFAR 286
>gb|BE357514.1|BE357514 DG1_20_G09.b2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 583
Score = 172 bits (370), Expect = 5e-042
Identities = 70/84 (83%), Positives = 70/84 (83%)
Frame = -2 / +1
Query: 652 EXIDYXXXXXECHSCSDLAXXXXAXXXXASIVFKDSKTYSDKLVKGAKALYKFGRLQRGR 473
E IDY ECHSCSDLA A ASIVFKDSKTYSDKLVKGAKALYKFGRLQRGR
Sbjct: 331 EDIDYKRPVTECHSCSDLASEMAAALAAASIVFKDSKTYSDKLVKGAKALYKFGRLQRGR 510
Query: 472 YSPNGSDQAIFYNSTSYWDEFVWG 401
YSPNGSDQAIFYNSTSYWDEFVWG
Sbjct: 511 YSPNGSDQAIFYNSTSYWDEFVWG 582
Score = 113 bits (241), Expect = 3e-024
Identities = 54/84 (64%), Positives = 55/84 (65%)
Frame = +3 / -3
Query: 402 PHTNSSQ*LVEL*KMAWSDPLGLYRPRCSLPNLYRALAPXXXXXXXXXXXXNTMEAXXXX 581
PHTNSSQ*LVEL*K+A SDPLGLYRPRCSLPNLYRA AP NTMEA
Sbjct: 581 PHTNSSQ*LVEL*KIA*SDPLGLYRPRCSLPNLYRAFAPLTSLSE*VLLSLNTMEAAARA 402
Query: 582 AXXXXARSEQEWHSXXXXX*SMXS 653
A ARSEQE HS *SM S
Sbjct: 401 AAISDARSEQE*HSVTGLL*SMSS 330
>gb|BI098991.1|BI098991 IP1_36_A03.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 446
Score = 172 bits (370), Expect = 5e-042
Identities = 70/84 (83%), Positives = 70/84 (83%)
Frame = -2 / +2
Query: 652 EXIDYXXXXXECHSCSDLAXXXXAXXXXASIVFKDSKTYSDKLVKGAKALYKFGRLQRGR 473
E IDY ECHSCSDLA A ASIVFKDSKTYSDKLVKGAKALYKFGRLQRGR
Sbjct: 194 EDIDYKRPVTECHSCSDLASEMAAALAAASIVFKDSKTYSDKLVKGAKALYKFGRLQRGR 373
Query: 472 YSPNGSDQAIFYNSTSYWDEFVWG 401
YSPNGSDQAIFYNSTSYWDEFVWG
Sbjct: 374 YSPNGSDQAIFYNSTSYWDEFVWG 445
Score = 113 bits (241), Expect = 3e-024
Identities = 54/84 (64%), Positives = 55/84 (65%)
Frame = +3 / -3
Query: 402 PHTNSSQ*LVEL*KMAWSDPLGLYRPRCSLPNLYRALAPXXXXXXXXXXXXNTMEAXXXX 581
PHTNSSQ*LVEL*K+A SDPLGLYRPRCSLPNLYRA AP NTMEA
Sbjct: 444 PHTNSSQ*LVEL*KIA*SDPLGLYRPRCSLPNLYRAFAPLTSLSE*VLLSLNTMEAAARA 265
Query: 582 AXXXXARSEQEWHSXXXXX*SMXS 653
A ARSEQE HS *SM S
Sbjct: 264 AAISDARSEQE*HSVTGLL*SMSS 193
>gb|CN134485.1|CN134485 OX1_26_D08.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_26_D08_A002 5', mRNA sequence
Length = 814
Score = 163 bits (350), Expect = 3e-039
Identities = 64/65 (98%), Positives = 65/65 (100%)
Frame = -2 / +3
Query: 196 LRTFHNQTDNVMCSYLPVFNSFNFTKGGLIQLNHGRPQPLQYAVNAAFLASLYSDYLEAA 17
LRTFHNQTDNVMCSYLP+FNSFNFTKGGLIQLNHGRPQPLQYAVNAAFLASLYSDYLEAA
Sbjct: 15 LRTFHNQTDNVMCSYLPLFNSFNFTKGGLIQLNHGRPQPLQYAVNAAFLASLYSDYLEAA 194
Query: 16 DTPGW 2
DTPGW
Sbjct: 195 DTPGW 209
Score = 151 bits (325), Expect = 8e-036
Identities = 63/65 (96%), Positives = 64/65 (98%)
Frame = +3 / -1
Query: 3 HPGVSAASR*SLYKEARKAALTAY*SG*GLPWLSCINPPLVKLNELNTGKYEHMTLSVWL 182
HPGVSAASR*SLYKEARKAALTAY*SG*GLPWLSCINPPLVKLNELN GKYEH+TLSVWL
Sbjct: 208 HPGVSAASR*SLYKEARKAALTAY*SG*GLPWLSCINPPLVKLNELNRGKYEHITLSVWL 29
Query: 183 WNVLS 197
WNVLS
Sbjct: 28 WNVLS 14
Score = 126 bits (270), Expect = 3e-028
Identities = 55/69 (79%), Positives = 57/69 (82%)
Frame = -1 / +2
Query: 209 LRRNTEDIPQPNRQRHVLVFTCIQFIQLHQRRINTAQPWKASTASVRCQRSFPCFFIQRL 30
L + TEDIPQPN QR+VLVFT IQFIQLH RRINT QPWKAST SV CQ SFPCFFIQ L
Sbjct: 2 LTKKTEDIPQPN*QRYVLVFTSIQFIQLH*RRINTTQPWKASTTSVCCQCSFPCFFIQ*L 181
Query: 29 S*SG*HAWV 3
S*S HAWV
Sbjct: 182 S*SCRHAWV 208
Score = 123 bits (264), Expect = 2e-027
Identities = 56/67 (83%), Positives = 59/67 (88%)
Frame = +1 / -2
Query: 1 TTQACQPLQDSRCIKKQGKLR*QRTEAVEAFHG*AVLILLW*S*MN*IQVNTST*RCRFG 180
TTQAC LQD+ CIKKQGKL *Q TE VEAFHG* VLILL *S*MN*I+VNTST*RC+FG
Sbjct: 210 TTQACLQLQDNHCIKKQGKLH*QHTEVVEAFHG*VVLILL**S*MN*IEVNTST*RCQFG 31
Query: 181 CGMSSVF 201
CGMSSVF
Sbjct: 30 CGMSSVF 10
Score = 122 bits (260), Expect = 8e-027
Identities = 54/66 (81%), Positives = 59/66 (89%)
Frame = +2 / -3
Query: 2 PPRRVSRFKIVAV*RSKESCVDSVLKRLRPSMVELY*SSFGEVE*IEYR*IRAHDVVGLV 181
PPRRV FKI+ V*RSKESC+DS+LK LRPSMVELY*SSF EVE*IE R*IRAH+VV LV
Sbjct: 209 PPRRVCSFKIITV*RSKESCIDSILKWLRPSMVELY*SSFSEVE*IE*R*IRAHNVVSLV 30
Query: 182 VECPQY 199
VECPQ+
Sbjct: 29 VECPQF 12
>gb|CW278251.1|CW278251 104_752_11406451_116_35644_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11406451, DNA
sequence
Length = 670
Score = 158 bits (340), Expect = 7e-038
Identities = 63/98 (64%), Positives = 70/98 (71%)
Frame = -2 / -2
Query: 652 EXIDYXXXXXECHSCSDLAXXXXAXXXXASIVFKDSKTYSDKLVKGAKALYKFGRLQRGR 473
E IDY ECH+CSDLA A ASIVFKD+K YS KLV GA L++F R +RGR
Sbjct: 294 EDIDYPRPVVECHACSDLAAEMAAALAAASIVFKDNKAYSQKLVHGATTLFQFARERRGR 115
Query: 472 YSPNGSDQAIFYNSTSYWDEFVWGGAWMYFATGNNSYL 359
YS GSD FYNSTSYWDEFVWG +WMY ATGN+SYL
Sbjct: 114 YSAGGSDATKFYNSTSYWDEFVWGSSWMYLATGNSSYL 1
>gb|CW143204.1|CW143204 104_534_11137288_148_34947_050 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11137288, DNA
sequence
Length = 571
Score = 134 bits (288), Expect(2) = 3e-037
Identities = 51/74 (68%), Positives = 59/74 (79%)
Frame = -2 / -1
Query: 526 LVKGAKALYKFGRLQRGRYSPNGSDQAIFYNSTSYWDEFVWGGAWMYFATGNNSYLTVAT 347
LV GA L++F R +RGRYS GSD FYNSTSYWDEFVWG +WMY ATGN+SYLT+AT
Sbjct: 571 LVHGATTLFQFARERRGRYSAGGSDATKFYNSTSYWDEFVWGSSWMYLATGNSSYLTLAT 392
Query: 346 APGMAKHAGAYWFG 305
P +AKHAGA+W G
Sbjct: 391 HPKLAKHAGAFWGG 350
Score = 41.8 bits (85), Expect(2) = 3e-037
Identities = 14/21 (66%), Positives = 19/21 (90%)
Frame = -2 / -1
Query: 313 WFGSPNYGVFTWDDKLPGAQV 251
++G P+YGVF+WD+KL GAQV
Sbjct: 361 FWGGPDYGVFSWDNKLTGAQV 299
>gb|CW143203.1|CW143203 104_534_11137288_116_34951_050 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11137288, DNA
sequence
Length = 571
Score = 133 bits (284), Expect(2) = 1e-036
Identities = 50/73 (68%), Positives = 58/73 (79%)
Frame = -2 / +2
Query: 523 VKGAKALYKFGRLQRGRYSPNGSDQAIFYNSTSYWDEFVWGGAWMYFATGNNSYLTVATA 344
V GA L++F R +RGRYS GSD FYNSTSYWDEFVWG +WMY ATGN+SYLT+AT
Sbjct: 2 VHGATTLFQFARERRGRYSAGGSDATKFYNSTSYWDEFVWGSSWMYLATGNSSYLTLATH 181
Query: 343 PGMAKHAGAYWFG 305
P +AKHAGA+W G
Sbjct: 182 PKLAKHAGAFWGG 220
Score = 41.8 bits (85), Expect(2) = 1e-036
Identities = 14/21 (66%), Positives = 19/21 (90%)
Frame = -2 / +2
Query: 313 WFGSPNYGVFTWDDKLPGAQV 251
++G P+YGVF+WD+KL GAQV
Sbjct: 209 FWGGPDYGVFSWDNKLTGAQV 271
>gb|CW269890.1|CW269890 104_741_11402081_116_35322_075 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11402081, DNA
sequence
Length = 645
Score = 149 bits (321), Expect = 3e-035
Identities = 57/96 (59%), Positives = 74/96 (77%)
Frame = -2 / +3
Query: 289 VFTWDDKLPGAQVLLSRLRLFLSPGYPYEEILRTFHNQTDNVMCSYLPVFNSFNFTKGGL 110
VF+WD+KLPGA +LLSRLR+FL+PGYPYE+ L +H ++ MC Y F +FNFT+GGL
Sbjct: 3 VFSWDNKLPGAGLLLSRLRMFLNPGYPYEQSLVGYHKESRLDMCKYFRRFGAFNFTRGGL 182
Query: 109 IQLNHGRPQPLQYAVNAAFLASLYSDYLEAADTPGW 2
NHGR QPLQY V +FLA+L++DY+EA + PGW
Sbjct: 183 ALFNHGRGQPLQYVVANSFLAALFADYMEAINVPGW 290
>gb|CW163892.1|CW163892 104_571_11151698_148_36455_003 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11151698, DNA
sequence
Length = 665
Score = 100 bits (213), Expect(2) = 2e-024
Identities = 39/55 (70%), Positives = 45/55 (81%)
Frame = -2 / +1
Query: 166 VMCSYLPVFNSFNFTKGGLIQLNHGRPQPLQYAVNAAFLASLYSDYLEAADTPGW 2
+ + L F F+ T GGLIQLNHG+PQPLQY VNAAFLAS++SDYLEAADTPGW
Sbjct: 475 ITAALLEQFTKFSSTTGGLIQLNHGKPQPLQYVVNAAFLASVFSDYLEAADTPGW 639
Score = 99.6 bits (211), Expect(2) = 3e-024
Identities = 39/49 (79%), Positives = 43/49 (87%)
Frame = -2 / +1
Query: 256 QVLLSRLRLFLSPGYPYEEILRTFHNQTDNVMCSYLPVFNSFNFTKGGL 110
QVLLSRLRLFLSPGYPYEE+LR FHNQT +MCSYLP+F SFN T+G L
Sbjct: 304 QVLLSRLRLFLSPGYPYEEMLRAFHNQTSIIMCSYLPIFKSFNRTRGDL 450
Score = 33.1 bits (66), Expect(2) = 3e-024
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = -1 / +3
Query: 134 IQLHQRRINTAQPWKASTASVRCQRSFPCFFIQRLS*SG*HAWV 3
I H R ++ + +A+T SV Q PCF +Q LS* ++WV
Sbjct: 507 IFFHYRWFDSVKSREATTPSVCGQCCIPCFCVQ*LS*GCGYSWV 638
Score = 32.7 bits (65), Expect(2) = 2e-024
Identities = 18/32 (56%), Positives = 19/32 (59%)
Frame = -3 / +2
Query: 255 RFFSAGCDSS*VQGTLTKKY*GHSTTKPTTSC 160
RFF AG S*V K+ *GHSTTK SC
Sbjct: 305 RFF*AG*GFS*VLDIHMKRC*GHSTTKLALSC 400
>gb|CW361677.1|CW361677 fsbb001f030f23f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f030f23, DNA
sequence
Length = 564
Score = 80.8 bits (170), Expect(3) = 1e-022
Identities = 29/57 (50%), Positives = 39/57 (68%)
Frame = -2 / +1
Query: 484 QRGRYSPNGSDQAIFYNSTSYWDEFVWGGAWMYFATGNNSYLTVATAPGMAKHAGAY 314
+ YS + D FYNSTSYWDE+VWG AW+Y+ATGN +YL+ P +A+ A A+
Sbjct: 343 EHATYSRHQQDIEPFYNSTSYWDEYVWGAAWVYYATGNTTYLSFPADPQLAERAKAF 513
Score = 38.2 bits (77), Expect(3) = 1e-022
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = -2 / +1
Query: 613 SCSDLAXXXXAXXXXASIVFKDSKTYSDKLVKGAKALYKF 494
S DL A ASI F+D YS KLV GA ++ F
Sbjct: 199 SAPDLGGEIAAALAAASIAFRDDAAYSKKLVHGAVTMFGF 318
Score = 26.3 bits (51), Expect(3) = 1e-022
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = -2 / +1
Query: 289 VFTWDDKLPG 260
VF+WD+KLPG
Sbjct: 535 VFSWDNKLPG 564
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 716,290,811
Number of Sequences: 832831
Number of extensions: 9829778
Number of successful extensions: 77975
Number of sequences better than 1.0e-020: 25
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 20792394350
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)