TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF31c07.yg.2.1
(352 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CL703926.2|CL703926 SP__Bb0008E01.r SP__Bb Sorghum propi... 114 5e-025
gb|CW131258.1|CW131258 104_514_11115577_148_34790_013 Sorgh... 83 2e-015
gb|CW491532.1|CW491532 fsbb001f281g24k0 Sorghum methylation... 60 8e-015
gb|CW466861.1|CW466861 fsbb001f218e17f0 Sorghum methylation... 74 6e-013
gb|CF756186.1|CF756186 DSAF1_4_C09.b1_A011 Drought-stressed... 69 3e-011
gb|CF761499.1|CF761499 DSAF1_77_A09.b1_A011 Drought-stresse... 61 6e-009
gb|CW491531.1|CW491531 fsbb001f281g24f0 Sorghum methylation... 56 2e-007
gb|CD224243.1|CD224243 CCC1_32_E02.g1_A007 Callus culture/c... 54 8e-007
gb|CW155074.1|CW155074 104_557_11145941_116_36355_023 Sorgh... 39 0.027
gb|CW467362.1|CW467362 fsbb001f219a11f0 Sorghum methylation... 39 0.027
gb|CW478107.1|CW478107 fsbb001f235m22f0 Sorghum methylation... 39 0.027
gb|CL192935.1|CL192935 104_416_10940594_114_32291_011 Sorgh... 33 2.3
gb|CW080828.1|CW080828 104_416_10940594_114_32342_011 Sorgh... 33 2.3
gb|CW291795.1|CW291795 104_771_11413740_148_35759_038 Sorgh... 33 2.3
gb|AW285105.1|AW285105 LG1_300_F07.g1_A002 Light Grown 1 (L... 33 2.3
gb|AW679154.1|AW679154 WS1_22_B03.g1_A002 Water-stressed 1 ... 33 2.3
gb|BF588011.1|BF588011 FM1_35_F03.g1_A003 Floral-Induced Me... 33 2.3
gb|CF433596.1|CF433596 NIT1_28_H06.b1_A002 Nitrogen-deficie... 33 2.3
gb|CN134214.1|CN134214 OX1_25_B02.b1_A002 Oxidatively-stres... 33 2.3
gb|CW286555.1|CW286555 104_764_11410939_148_35519_076 Sorgh... 31 2.8
gb|CL174160.1|CL174160 104_378_10891387_148_31770_139 Sorgh... 31 8.1
gb|CW257574.1|CW257574 104_723_11227411_148_35154_078 Sorgh... 31 8.1
gb|CW274417.1|CW274417 104_747_11404416_116_35377_092 Sorgh... 31 8.1
gb|CW302902.1|CW302902 104_787_11464962_116_35675_075 Sorgh... 31 8.1
gb|CW350841.1|CW350841 fsbb001f012f13k0 Sorghum methylation... 31 8.1
gb|CW361565.1|CW361565 fsbb001f030d10f0 Sorghum methylation... 31 8.1
gb|CW446680.1|CW446680 fsbb001f179h06f0 Sorghum methylation... 31 8.1
gb|CW501754.1|CW501754 fsbb001f297m01k0 Sorghum methylation... 31 8.1
gb|BM329829.1|BM329829 PIC1_43_B01.g1_A002 Pathogen-infecte... 31 8.1
gb|BM331147.1|BM331147 PIC1_70_C06.g1_A002 Pathogen-infecte... 31 8.1
gb|CD220743.1|CD220743 CCC1_69_E05.b1_A007 Callus culture/c... 31 8.1
gb|CN124859.1|CN124859 RHOH1_7_G11.b1_A002 Acid- and alkali... 31 8.1
gb|CN131478.1|CN131478 RHOH1_48_G10.b1_A002 Acid- and alkal... 31 8.1
>gb|CL703926.2|CL703926 SP__Bb0008E01.r SP__Bb Sorghum propinquum genomic clone
SP__Bb0008E01 3', DNA sequence
Length = 727
Score = 114 bits (244), Expect = 5e-025
Identities = 47/49 (95%), Positives = 47/49 (95%)
Frame = -1 / +2
Query: 148 IDSRTEVXAGFAASPSTNRKKCETPMTL**YNHGRIWCRPADVLPVIQI 2
IDSRTEV AGFAASPST RKKCETPMTL**YNHGRIWCRPADVLPVIQI
Sbjct: 494 IDSRTEVTAGFAASPSTKRKKCETPMTL**YNHGRIWCRPADVLPVIQI 640
Score = 113 bits (242), Expect = 9e-025
Identities = 44/50 (88%), Positives = 45/50 (90%)
Frame = +2 / -1
Query: 2 DLYHGKHICWPTPDSSMVVLSQCHWCFTFLSIS*RRGCKASXXLCS*IYS 151
DLYHGKHICWPTPDS MVVLSQ HWCFTFLS+ *RRGCKAS LCS*IYS
Sbjct: 640 DLYHGKHICWPTPDSPMVVLSQGHWCFTFLSLC*RRGCKASCHLCS*IYS 491
Score = 112 bits (240), Expect = 2e-024
Identities = 46/50 (92%), Positives = 47/50 (94%)
Frame = +3 / -2
Query: 3 ICITGSTSAGLHQILPWLYYHNVIGVSHFFLLVEGEAAKPAXTSVLESIQ 152
ICITGSTSAGLHQILPWLYYH VIGVSHFFL VEGEAAKPA TSVLESI+
Sbjct: 639 ICITGSTSAGLHQILPWLYYHKVIGVSHFFLFVEGEAAKPAVTSVLESIR 490
Score = 106 bits (226), Expect = 1e-022
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = -3 / +1
Query: 149 NRFKNRGXSWLCSLSFN**KEM*NTNDIVIIQPWKNLV*ASRCASRDTD 3
NRFKNRG SWLCSLSFN KEM*NTND+VIIQPW+NLV*ASRCASRDTD
Sbjct: 493 NRFKNRGDSWLCSLSFNKEKEM*NTNDLVIIQPWENLV*ASRCASRDTD 639
Score = 103 bits (219), Expect = 1e-021
Identities = 45/50 (90%), Positives = 45/50 (90%)
Frame = +1 / -3
Query: 1 RSVSREAHLLAYTRFFHGCIITMSLVFHISFY*LKERLQSQLXPLFLNLF 150
RSVSREAHLLAYTRF HGCIIT SLVFHISF LKERLQSQL PLFLNLF
Sbjct: 641 RSVSREAHLLAYTRFSHGCIITRSLVFHISFSLLKERLQSQLSPLFLNLF 492
Score = 71.6 bits (150), Expect = 4e-012
Identities = 29/31 (93%), Positives = 29/31 (93%)
Frame = -2 / +3
Query: 93 ERNVKHQ*HCDNTTMEESGVGQQMCFP*YRS 1
ERNVKHQ* CDNTTM ESGVGQQMCFP*YRS
Sbjct: 549 ERNVKHQ*PCDNTTMGESGVGQQMCFP*YRS 641
>gb|CW131258.1|CW131258 104_514_11115577_148_34790_013 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11115577, DNA
sequence
Length = 625
Score = 82.6 bits (174), Expect = 2e-015
Identities = 32/49 (65%), Positives = 38/49 (77%)
Frame = +3 / -1
Query: 3 ICITGSTSAGLHQILPWLYYHNVIGVSHFFLLVEGEAAKPAXTSVLESI 149
+C+ STSAGL QILPWL+YH V+GV+ F L VEG+AAKP VLESI
Sbjct: 580 VCVQTSTSAGLEQILPWLFYHKVVGVAQFLLFVEGKAAKPNVAGVLESI 434
Score = 54.2 bits (112), Expect = 8e-007
Identities = 25/44 (56%), Positives = 28/44 (63%)
Frame = -1 / +3
Query: 148 IDSRTEVXAGFAASPSTNRKKCETPMTL**YNHGRIWCRPADVL 17
IDSRT G AA PST + C TP TL** + GRI PA+VL
Sbjct: 435 IDSRTPATLGLAALPSTKSRNCATPTTL**KSQGRICSSPAEVL 566
>gb|CW491532.1|CW491532 fsbb001f281g24k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f281g24, DNA
sequence
Length = 721
Score = 59.7 bits (124), Expect(2) = 8e-015
Identities = 24/37 (64%), Positives = 26/37 (70%)
Frame = +1 / -2
Query: 151 SRIWNETXXAGXFYKPXXYELXXXQXLNMEMXIIMXR 261
SRIWNET +G FYKP YEL Q LNMEM I+M R
Sbjct: 111 SRIWNETWLSGFFYKPCNYELFVKQSLNMEMAIVMGR 1
Score = 40.5 bits (82), Expect(2) = 8e-015
Identities = 17/27 (62%), Positives = 20/27 (74%)
Frame = +3 / -1
Query: 69 VIGVSHFFLLVEGEAAKPAXTSVLESI 149
V+GV+ F L VEG+AAKP VLESI
Sbjct: 718 VVGVAQFLLFVEGKAAKPNVAGVLESI 638
Score = 38.2 bits (77), Expect(2) = 2e-007
Identities = 19/35 (54%), Positives = 20/35 (57%)
Frame = -3 / +2
Query: 254 IIXXISMFXXCXXXSS*XXGL*XXPAXQVSFQMRL 150
I ISM C SS* GL* P QVSFQ+RL
Sbjct: 8 ITIAISMLSDCFTKSS*LQGL*KNPESQVSFQIRL 112
Score = 37.3 bits (75), Expect(2) = 2e-007
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = -1 / +3
Query: 148 IDSRTEVXAGFAASPSTNRKKCETPMT 68
IDSRT G AA PST + C TP T
Sbjct: 639 IDSRTPATLGLAALPSTKSRNCATPTT 719
Score = 30.9 bits (61), Expect = 8.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2 / +1
Query: 261 PXHNNXHFHV*XLLXXXFVXXXLVKXTCXXSLIPNA 154
P H N H HV LL F+ V+ + SL+P++
Sbjct: 1 PSHYNSHLHVE*LLHKEFIVARFVEKS*KPSLVPDS 108
>gb|CW466861.1|CW466861 fsbb001f218e17f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f218e17, DNA
sequence
Length = 481
Score = 74.4 bits (156), Expect = 6e-013
Identities = 27/40 (67%), Positives = 33/40 (82%)
Frame = +3 / -2
Query: 3 ICITGSTSAGLHQILPWLYYHNVIGVSHFFLLVEGEAAKP 122
+C+ STSAGL QILPWL+YH V+GV+ F L VEG+AAKP
Sbjct: 129 VCVQTSTSAGLEQILPWLFYHKVVGVAQFLLFVEGKAAKP 10
Score = 44.1 bits (90), Expect = 8e-004
Identities = 20/35 (57%), Positives = 23/35 (65%)
Frame = -1 / +2
Query: 121 GFAASPSTNRKKCETPMTL**YNHGRIWCRPADVL 17
G AA PST + C TP TL** + GRI PA+VL
Sbjct: 11 GLAALPSTKSRNCATPTTL**KSQGRICSSPAEVL 115
>gb|CF756186.1|CF756186 DSAF1_4_C09.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_4_C09_A011 5', mRNA sequence
Length = 435
Score = 69.3 bits (145), Expect(2) = 3e-011
Identities = 29/50 (58%), Positives = 32/50 (64%)
Frame = +1 / +3
Query: 151 SRIWNETXXAGXFYKPXXYELXXXQXLNMEMXIIMXRDARMDXIXXXXTD 300
S+IWNET +G FYKP YEL Q LNMEM I+M RD MD I TD
Sbjct: 258 SQIWNETWLSGFFYKPCNYELFVKQSLNMEMAIVMARDGGMDWIIHLDTD 407
Score = 40.9 bits (83), Expect = 0.008
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = -2 / -2
Query: 300 ISXXXXDXIHSSIPXHNNXHFHV*XLLXXXFVXXXLVKXTCXXSLIPN 157
IS D IH++IP H N H HV LL F+ V+ + SL+P+
Sbjct: 407 ISV*MYDPIHATIPSHYNSHLHVE*LLHKEFIVARFVEKS*KPSLVPD 264
Score = 40.9 bits (83), Expect = 0.008
Identities = 23/49 (46%), Positives = 25/49 (51%)
Frame = -3 / -3
Query: 302 SSVXXXMXXSILASLXIIXXISMFXXCXXXSS*XXGL*XXPAXQVSFQM 156
SSV M S+ S I ISM C SS* GL* P QVSFQ+
Sbjct: 409 SSVSRCMIQSMPPSRAITIAISMLSDCFTKSS*LQGL*KNPESQVSFQI 263
Score = 17.1 bits (31), Expect(2) = 3e-011
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = +2 / +2
Query: 44 SSMVVLSQC 70
+S +VLSQC
Sbjct: 155 NSRLVLSQC 181
>gb|CF761499.1|CF761499 DSAF1_77_A09.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_77_A09_A011 5', mRNA sequence
Length = 371
Score = 61.1 bits (127), Expect(2) = 6e-009
Identities = 24/38 (63%), Positives = 27/38 (71%)
Frame = +1 / +3
Query: 151 SRIWNETXXAGXFYKPXXYELXXXQXLNMEMXIIMXRD 264
S+IWNET +G FYKP YEL Q LNMEM I+M RD
Sbjct: 258 SQIWNETWLSGFFYKPCNYELFVKQSLNMEMAIVMARD 371
Score = 35.0 bits (70), Expect = 0.47
Identities = 18/36 (50%), Positives = 19/36 (52%)
Frame = -3 / -2
Query: 263 SLXIIXXISMFXXCXXXSS*XXGL*XXPAXQVSFQM 156
S I ISM C SS* GL* P QVSFQ+
Sbjct: 370 SRAITIAISMLSDCFTKSS*LQGL*KNPESQVSFQI 263
Score = 32.2 bits (64), Expect = 3.1
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2 / -1
Query: 264 IPXHNNXHFHV*XLLXXXFVXXXLVKXTCXXSLIPN 157
IP H N H HV LL F+ V+ + SL+P+
Sbjct: 371 IPSHYNSHLHVE*LLHKEFIVARFVEKS*KPSLVPD 264
Score = 17.1 bits (31), Expect(2) = 6e-009
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = +2 / +2
Query: 44 SSMVVLSQC 70
+S +VLSQC
Sbjct: 155 NSRLVLSQC 181
>gb|CW491531.1|CW491531 fsbb001f281g24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f281g24, DNA
sequence
Length = 541
Score = 56.1 bits (116), Expect = 2e-007
Identities = 19/29 (65%), Positives = 24/29 (82%)
Frame = +3 / +3
Query: 3 ICITGSTSAGLHQILPWLYYHNVIGVSHF 89
+C+ STSAGL QILPWL+YH V+GV+ F
Sbjct: 450 VCVQTSTSAGLEQILPWLFYHKVVGVAQF 536
Score = 31.8 bits (63), Expect = 4.3
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -1 / -1
Query: 91 KKCETPMTL**YNHGRIWCRPADVL 17
+ C TP TL** + GRI PA+VL
Sbjct: 538 RNCATPTTL**KSQGRICSSPAEVL 464
>gb|CD224243.1|CD224243 CCC1_32_E02.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_32_E02_A007 5', mRNA sequence
Length = 537
Score = 54.2 bits (112), Expect = 8e-007
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +3 / +1
Query: 3 ICITGSTSAGLHQILPWLYY 62
ICITGSTSAGLHQILPWLYY
Sbjct: 478 ICITGSTSAGLHQILPWLYY 537
Score = 51.0 bits (105), Expect = 7e-006
Identities = 18/20 (90%), Positives = 18/20 (90%)
Frame = +2 / +3
Query: 2 DLYHGKHICWPTPDSSMVVL 61
DLYHGKHICW TPDS MVVL
Sbjct: 477 DLYHGKHICWATPDSPMVVL 536
Score = 51.0 bits (105), Expect = 7e-006
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = -1 / -2
Query: 61 *YNHGRIWCRPADVLPVIQI 2
*YNHGRIWC PADVLPVIQI
Sbjct: 536 *YNHGRIWCSPADVLPVIQI 477
Score = 46.4 bits (95), Expect = 2e-004
Identities = 18/20 (90%), Positives = 18/20 (90%)
Frame = +1 / +2
Query: 1 RSVSREAHLLAYTRFFHGCI 60
RSVSREAHLL YTRF HGCI
Sbjct: 476 RSVSREAHLLGYTRFSHGCI 535
Score = 46.0 bits (94), Expect = 2e-004
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = -3 / -1
Query: 62 IIQPWKNLV*ASRCASRDTD 3
IIQPW+NLV* SRCASRDTD
Sbjct: 537 IIQPWENLV*PSRCASRDTD 478
Score = 45.1 bits (92), Expect = 4e-004
Identities = 18/20 (90%), Positives = 18/20 (90%)
Frame = -2 / -3
Query: 60 NTTMEESGVGQQMCFP*YRS 1
NTTM ESGV QQMCFP*YRS
Sbjct: 535 NTTMGESGVAQQMCFP*YRS 476
>gb|CW155074.1|CW155074 104_557_11145941_116_36355_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11145941, DNA
sequence
Length = 647
Score = 39.1 bits (79), Expect = 0.027
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +3 / -2
Query: 9 ITGSTSAGLHQILPWLYYHNVIGVSHFFLLVEGEAAKPAXTSVL 140
+T + S + + LPW+ YH V H F+L +G A + T VL
Sbjct: 229 VTPTMSRHIARQLPWIRYHEVPDAGHLFILADGMADRIVKTLVL 98
>gb|CW467362.1|CW467362 fsbb001f219a11f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f219a11, DNA
sequence
Length = 574
Score = 39.1 bits (79), Expect = 0.027
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +3 / -3
Query: 9 ITGSTSAGLHQILPWLYYHNVIGVSHFFLLVEGEAAKPAXTSVL 140
+T + S + + LPW+ YH V H F+L +G A + T VL
Sbjct: 545 VTPTMSRHIARQLPWIRYHEVPDAGHLFILADGMADRIVKTLVL 414
>gb|CW478107.1|CW478107 fsbb001f235m22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f235m22, DNA
sequence
Length = 624
Score = 39.1 bits (79), Expect = 0.027
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +3 / -2
Query: 9 ITGSTSAGLHQILPWLYYHNVIGVSHFFLLVEGEAAKPAXTSVL 140
+T + S + + LPW+ YH V H F+L +G A + T VL
Sbjct: 581 VTPTMSRHIARQLPWIRYHEVPDAGHLFILADGMADRIVKTLVL 450
>gb|CL192935.1|CL192935 104_416_10940594_114_32291_011 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10940594, DNA
sequence
Length = 745
Score = 32.7 bits (65), Expect = 2.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2 / +1
Query: 26 CWPTPDSSMVVLSQCHWC 79
CWPT + +V+L CH C
Sbjct: 190 CWPTKHTPIVILGTCHGC 243
>gb|CW080828.1|CW080828 104_416_10940594_114_32342_011 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10940594, DNA
sequence
Length = 707
Score = 32.7 bits (65), Expect = 2.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2 / +3
Query: 26 CWPTPDSSMVVLSQCHWC 79
CWPT + +V+L CH C
Sbjct: 189 CWPTKHTPIVILGTCHGC 242
>gb|CW291795.1|CW291795 104_771_11413740_148_35759_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11413740, DNA
sequence
Length = 659
Score = 32.7 bits (65), Expect = 2.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3 / -1
Query: 45 LPWLYYHNVIGVSHFFLLVEG 107
LPW+ YH V H F+LV+G
Sbjct: 173 LPWIKYHEVPEGGHMFMLVDG 111
>gb|AW285105.1|AW285105 LG1_300_F07.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 515
Score = 32.7 bits (65), Expect = 2.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3 / +2
Query: 45 LPWLYYHNVIGVSHFFLLVEG 107
LPW+ YH V H F+LV+G
Sbjct: 278 LPWIKYHEVPEGGHMFMLVDG 340
>gb|AW679154.1|AW679154 WS1_22_B03.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 546
Score = 32.7 bits (65), Expect = 2.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3 / +1
Query: 45 LPWLYYHNVIGVSHFFLLVEG 107
LPW+ YH V H F+LV+G
Sbjct: 322 LPWIKYHEVPEGGHMFMLVDG 384
>gb|BF588011.1|BF588011 FM1_35_F03.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 529
Score = 32.7 bits (65), Expect = 2.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3 / +1
Query: 45 LPWLYYHNVIGVSHFFLLVEG 107
LPW+ YH V H F+LV+G
Sbjct: 304 LPWIKYHEVPEGGHMFMLVDG 366
>gb|CF433596.1|CF433596 NIT1_28_H06.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_28_H06_A002 3', mRNA sequence
Length = 648
Score = 32.7 bits (65), Expect = 2.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3 / +2
Query: 45 LPWLYYHNVIGVSHFFLLVEG 107
LPW+ YH V H F+LV+G
Sbjct: 392 LPWIKYHEVPEGGHMFMLVDG 454
>gb|CN134214.1|CN134214 OX1_25_B02.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_25_B02_A002 3', mRNA sequence
Length = 786
Score = 32.7 bits (65), Expect = 2.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3 / +1
Query: 45 LPWLYYHNVIGVSHFFLLVEG 107
LPW+ YH V H F+LV+G
Sbjct: 397 LPWIKYHEVPEGGHMFMLVDG 459
>gb|CW286555.1|CW286555 104_764_11410939_148_35519_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11410939, DNA
sequence
Length = 578
Score = 30.9 bits (61), Expect(2) = 2.8
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3 / -3
Query: 72 IGVSHFFLLVEGEAAKPAXTSVLESIQPHL 161
+GVS FFL +EG A VL ++Q H+
Sbjct: 108 MGVSFFFLYLEGMPAPSTTRFVLRNMQTHI 19
Score = 18.0 bits (33), Expect(2) = 2.8
Identities = 3/6 (50%), Positives = 6/6 (100%)
Frame = +3 / -2
Query: 48 PWLYYH 65
PW+++H
Sbjct: 559 PWIHFH 542
>gb|CL174160.1|CL174160 104_378_10891387_148_31770_139 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10891387, DNA
sequence
Length = 734
Score = 30.9 bits (61), Expect = 8.1
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +2 / +1
Query: 23 ICWPTPDSSMVVLSQCH 73
+CW TP M++++QCH
Sbjct: 592 MCWATPQGWMLLITQCH 642
>gb|CW257574.1|CW257574 104_723_11227411_148_35154_078 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11227411, DNA
sequence
Length = 660
Score = 30.9 bits (61), Expect = 8.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3 / -2
Query: 18 STSAGLHQILPWLYYHNVIGVSHFFLLVEGEA 113
S S + + LPW+ YH + H FL+ +G A
Sbjct: 587 SLSRYISEKLPWVVYHELPKSGHLFLIGDGMA 492
>gb|CW274417.1|CW274417 104_747_11404416_116_35377_092 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11404416, DNA
sequence
Length = 513
Score = 30.9 bits (61), Expect = 8.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3 / -3
Query: 18 STSAGLHQILPWLYYHNVIGVSHFFLLVEGEA 113
S S + + LPW+ YH + H FL+ +G A
Sbjct: 343 SLSRYISEKLPWVVYHELPKSGHLFLIGDGMA 248
>gb|CW302902.1|CW302902 104_787_11464962_116_35675_075 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11464962, DNA
sequence
Length = 695
Score = 30.9 bits (61), Expect = 8.1
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -1 / +1
Query: 52 HGRIWCRPADVLPV 11
+G++WCRP D LPV
Sbjct: 94 YGKLWCRPRDRLPV 135
>gb|CW350841.1|CW350841 fsbb001f012f13k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f012f13, DNA
sequence
Length = 784
Score = 30.9 bits (61), Expect = 8.1
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +2 / +1
Query: 23 ICWPTPDSSMVVLSQCH 73
+CW TP M++++QCH
Sbjct: 451 MCWATPQGWMLLITQCH 501
>gb|CW361565.1|CW361565 fsbb001f030d10f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f030d10, DNA
sequence
Length = 710
Score = 30.9 bits (61), Expect = 8.1
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +2 / +1
Query: 23 ICWPTPDSSMVVLSQCH 73
+CW TP M++++QCH
Sbjct: 346 MCWATPQGWMLLITQCH 396
>gb|CW446680.1|CW446680 fsbb001f179h06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f179h06, DNA
sequence
Length = 280
Score = 30.9 bits (61), Expect = 8.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2 / -3
Query: 32 PTPDSSMVVLSQCHWCFTFLSIS*RRGC 115
P P + V + H C +S+S*RRGC
Sbjct: 251 PCPAAPSVAVDWMHACMATVSLS*RRGC 168
>gb|CW501754.1|CW501754 fsbb001f297m01k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f297m01, DNA
sequence
Length = 758
Score = 30.9 bits (61), Expect = 8.1
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +2 / +3
Query: 23 ICWPTPDSSMVVLSQCH 73
+CW TP M++++QCH
Sbjct: 519 MCWATPQGWMLLITQCH 569
>gb|BM329829.1|BM329829 PIC1_43_B01.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 573
Score = 30.9 bits (61), Expect = 8.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3 / +1
Query: 18 STSAGLHQILPWLYYHNVIGVSHFFLLVEGEA 113
S S + + LPW+ YH + H FL+ +G A
Sbjct: 79 SLSRYISEKLPWVVYHELPKSGHLFLIGDGMA 174
>gb|BM331147.1|BM331147 PIC1_70_C06.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 563
Score = 30.9 bits (61), Expect = 8.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3 / +3
Query: 18 STSAGLHQILPWLYYHNVIGVSHFFLLVEGEA 113
S S + + LPW+ YH + H FL+ +G A
Sbjct: 69 SLSRYISEKLPWVVYHELPKSGHLFLIGDGMA 164
>gb|CD220743.1|CD220743 CCC1_69_E05.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_69_E05_A007 3', mRNA sequence
Length = 418
Score = 30.9 bits (61), Expect = 8.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3 / +1
Query: 18 STSAGLHQILPWLYYHNVIGVSHFFLLVEGEA 113
S S + + LPW+ YH + H FL+ +G A
Sbjct: 76 SLSRYISEKLPWVVYHELPKSGHLFLIGDGMA 171
>gb|CN124859.1|CN124859 RHOH1_7_G11.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_7_G11_A002 3', mRNA sequence
Length = 737
Score = 30.9 bits (61), Expect = 8.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3 / +3
Query: 18 STSAGLHQILPWLYYHNVIGVSHFFLLVEGEA 113
S S + + LPW+ YH + H FL+ +G A
Sbjct: 390 SLSRYISEKLPWVVYHELPKSGHLFLIGDGMA 485
>gb|CN131478.1|CN131478 RHOH1_48_G10.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_48_G10_A002 3', mRNA sequence
Length = 758
Score = 30.9 bits (61), Expect = 8.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3 / +1
Query: 18 STSAGLHQILPWLYYHNVIGVSHFFLLVEGEA 113
S S + + LPW+ YH + H FL+ +G A
Sbjct: 253 SLSRYISEKLPWVVYHELPKSGHLFLIGDGMA 348
Database: Sorghum_nucl_with_EST.fasta
Posted date: May 2, 2006 3:37 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 272,385,802
Number of Sequences: 832831
Number of extensions: 2501746
Number of successful extensions: 127456
Number of sequences better than 10.0: 35
length of database: 163,786,556
effective HSP length: 51
effective length of database: 121,312,175
effective search space used: 7885291375
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)