TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF12e06.yg.2.1
(561 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC169370.3| Sorghum bicolor clone SB_BBc0011I20, WORKING... 224 e-103
gb|BI212063.1|BI212063 IP1_61_B03.g1_A002 Immature pannicle... 184 7e-046
gb|CN140420.1|CN140420 OX1_36_B10.b1_A002 Oxidatively-stres... 84 3e-034
gb|CD210962.1|CD210962 HS1_58_B05.b1_A012 Heat-shocked seed... 143 3e-033
gb|CW037385.1|CW037385 104_269_10504310_115_30384 Sorghum m... 135 6e-031
gb|CN149194.1|CN149194 WOUND1_61_F10.b1_A002 Wounded leaves... 84 6e-030
gb|BI139893.1|BI139893 IP1_47_A12.b1_A002 Immature pannicle... 97 7e-030
gb|CW306008.1|CW306008 104_791_11466607_148_36273_024 Sorgh... 78 8e-026
gb|BZ628082.1|BZ628082 ih57h02.g1 WGS-SbicolorF (DH5a methy... 107 2e-022
gb|CF487333.1|CF487333 POL1_43_D11.b1_A002 Pollen Sorghum b... 91 2e-022
gb|CF485968.1|CF485968 POL1_34_H03.g1_A002 Pollen Sorghum b... 106 3e-022
gb|CW144377.1|CW144377 104_536_11137911_148_34962_056 Sorgh... 91 5e-022
>gb|AC169370.3| Sorghum bicolor clone SB_BBc0011I20, WORKING DRAFT SEQUENCE, 9
unordered pieces
Length = 143922
Score = 224 bits (483), Expect(2) = e-103
Identities = 92/106 (86%), Positives = 99/106 (93%)
Frame = +3 / -3
Query: 3 ISIFGLSHFLLPDLLPSLNRVVVLDDDLIVQKDLSPLWNLDMGGKVIGAVQFCGVRLGQL 182
ISIFG SHFLLPDLLPSLNRVVVLDDDLIVQKDLS LWNLDMGGKVIGAVQFC VRLGQL
Sbjct: 66934 ISIFGHSHFLLPDLLPSLNRVVVLDDDLIVQKDLSSLWNLDMGGKVIGAVQFCEVRLGQL 66755
Query: 183 KPYIADHNVDDDSCVWLSGLNVIELDKWRDTGITSLHDQSVQKLRK 320
KPY+ADHNV+ +SCVWLSGLNV+ELDKWRD GITSL+DQS QK+ +
Sbjct: 66754 KPYMADHNVNANSCVWLSGLNVVELDKWRDMGITSLYDQSFQKVSR 66617
Score = 221 bits (477), Expect(2) = 4e-091
Identities = 90/103 (87%), Positives = 94/103 (91%)
Frame = -3 / +3
Query: 310 FWTD*SCKLVMPVSLHLSNSMTFRPDNHTHESSSTLWSAI*GFSCPNLTPQNWTAPITLP 131
FW D*S KLVMP+SLHLSNS TF+PDNHTHE + TLWSAI*GF+ PNLT QNWTAPITLP
Sbjct: 66627 FWND*SYKLVMPMSLHLSNSTTFKPDNHTHELALTLWSAI*GFNWPNLTSQNWTAPITLP 66806
Query: 130 PISRFHRGDKSFWTIKSSSRTTTLFKLGRRSGKRKCERPKIDM 2
PISRFHR DKSFWTIKSSSRTTTLFKLGRRSGKRKCE PKIDM
Sbjct: 66807 PISRFHRDDKSFWTIKSSSRTTTLFKLGRRSGKRKCEWPKIDM 66935
Score = 190 bits (410), Expect(2) = 3e-081
Identities = 81/102 (79%), Positives = 83/102 (81%)
Frame = -1 / +1
Query: 306 GLIDHANW*CQCPSIYPIQ*HSGPTTTHMNHHRRYGLLYKVSAALISLHRTGLLQSLYHP 127
G IDH N *C CPSIYPIQ HS TTHMN H YGL YKVS LISLHRTG QSLYHP
Sbjct: 66631 GTIDHTNL*CPCPSIYPIQRHSSQITTHMN*H*HYGLPYKVSTGLISLHRTGQHQSLYHP 66810
Query: 126 YRGSIEVTSPSGQSNHHPEQLLYSS*EEGQARGNVKGRR*IC 1
YRGS E+TS SGQSNHHPEQLLYSS*EEGQARGNV GR+*IC
Sbjct: 66811 YRGSTEMTSLSGQSNHHPEQLLYSS*EEGQARGNVNGRK*IC 66936
Score = 187 bits (403), Expect(2) = 3e-081
Identities = 86/103 (83%), Positives = 91/103 (88%)
Frame = +1 / -1
Query: 1 TYLSSAFHISSCLTFFLA*IE*LFWMMI*LSRRTCHLYGTSIWVVK*LEQSSSVE*D*GS 180
TYL SA HISSCLTFFLA*IE*LFWMMI*LSR+TCHL GTSIWVVK*L SSSV+*D* S
Sbjct: 66936 TYLFSAIHISSCLTFFLA*IE*LFWMMI*LSRKTCHLCGTSIWVVK*LVLSSSVK*D*AS 66757
Query: 181 *NLI*QTITSMMIHVCGCRA*MSLNWINGGTLALPVCMINQSR 309
*NLI QTI SM+IHVCG A*MSLNWINGGT AL VCMIN+S+
Sbjct: 66756 *NLIWQTIMSMLIHVCGYLA*MSLNWINGGTWALQVCMINRSK 66628
Score = 181 bits (390), Expect(2) = e-103
Identities = 71/80 (88%), Positives = 76/80 (95%)
Frame = +3 / -1
Query: 309 KLRKDSLKSQRLQALPAGLLAFQDLVYPLEDSWVESGLGHDYGISHVDIEKAATLHYNGV 488
+LRKD LKSQR QALPA LLAFQDLVYPLEDSWV+SGLGHDYGISHVDIEKAATLHYNGV
Sbjct: 66468 QLRKDRLKSQRFQALPASLLAFQDLVYPLEDSWVQSGLGHDYGISHVDIEKAATLHYNGV 66289
Query: 489 MKPWLDLGILDYKNYWRKYL 548
MKPWLDLGI DYK+YWR+Y+
Sbjct: 66288 MKPWLDLGIHDYKSYWREYM 66229
Score = 160 bits (345), Expect(2) = 8e-066
Identities = 75/105 (71%), Positives = 82/105 (78%)
Frame = -2 / +2
Query: 317 SQLLD*LIMQTGNASVPPFIQFNDIQARQPHT*IIIDVMVCYIRFQLP*SHSTELDCSNH 138
+ LL+ LI+QT NA VPPFIQFNDIQAR PHT*I ID+MVC+IRFQL *SH TELD +NH
Sbjct: 66620 TDLLERLIIQTCNAHVPPFIQFNDIQAR*PHT*ISIDIMVCHIRFQLA*SHFTELDSTNH 66799
Query: 137 FTTHIEVP*R*QVLLDXXXXXXXXXXXQARKKVRQEEM*KAEDRY 3
FTTHIEVP R*QV LD QARKKVRQEEM* AE+RY
Sbjct: 66800 FTTHIEVPQR*QVFLDNQIIIQNNYSIQARKKVRQEEM*MAENRY 66934
Score = 158 bits (339), Expect(2) = 2e-071
Identities = 71/103 (68%), Positives = 76/103 (73%)
Frame = +2 / -2
Query: 2 HIYLRPFTFPLA*PXXXXXXXXXXG**FDCPEGLVTSMEPRYGW*SDWSSPVLWSEIRAA 181
HIY RPFTFPLA*P G**FDCPE LV S+EPRYGW*SDW PVL SEIR
Sbjct: 66935 HIYFRPFTFPLA*PSS*LE*SSCSG**FDCPERLVISVEPRYGW*SDWCCPVL*SEIRPV 66756
Query: 182 ETLYSRP*RR**FMCVVVGPECH*IG*MEGHWHYQFA*SISPE 310
ETLY RP* + *FMCVV+ EC *IG*MEGH HY+F *SI P+
Sbjct: 66755 ETLYGRP*CQC*FMCVVIWLECR*IG*MEGHGHYKFV*SIVPK 66627
Score = 144 bits (310), Expect(2) = 3e-081
Identities = 61/78 (78%), Positives = 66/78 (84%)
Frame = +2 / -3
Query: 311 VAKGQPEISATASTPCRSTCLSRPGISFGRFMG*VRPWT*LWNQPCRYREGCYSALQWCD 490
VAKG PEI+A + TPC+ TCLSR GISFGRFMG +RPWT*LWN RYR+GCYSAL WCD
Sbjct: 66466 VAKGPPEITAISGTPCKFTCLSRSGISFGRFMGSIRPWT*LWN*SRRYRKGCYSAL*WCD 66287
Query: 491 ETLA*LGDT*LQELLEEV 544
ETLA*LGDT*L ELLE V
Sbjct: 66286 ETLA*LGDT*L*ELLEGV 66233
Score = 144 bits (308), Expect(2) = 4e-091
Identities = 62/71 (87%), Positives = 67/71 (94%)
Frame = -2 / +1
Query: 521 IKYPQVKPRFHHTIVVQSSSLLYIDMADSIIMSKA*LNP*IFQRIYQVLKGK*TCRECLQ 342
I YPQVKPRFHHTI+VQSSSL YID+ +SIIMSKA*LNP*IFQRIYQ+LKGK*TCRECL+
Sbjct: 66256 IMYPQVKPRFHHTIIVQSSSLFYIDVTNSIIMSKA*LNP*IFQRIYQILKGK*TCRECLK 66435
Query: 341 SLRFQAVLSQL 309
SL FQAVLSQL
Sbjct: 66436 SL*FQAVLSQL 66468
Score = 141 bits (303), Expect(2) = 2e-071
Identities = 60/73 (82%), Positives = 64/73 (87%)
Frame = +1 / -2
Query: 304 SRSCERTA*NLSDCKHSLQVYLPFKTWYILWKIHGLSQALDMIMESAMSI*RRLLLCTTM 483
S SCERTA*N SD +HSLQVYLPFK WYILWKIHG +QALDMIME SI*+RLLLCT M
Sbjct: 66473 SCSCERTA*NHSDFRHSLQVYLPFKIWYILWKIHGFNQALDMIMELVTSI*KRLLLCTIM 66294
Query: 484 V**NLGLTWGYLI 522
V**NLGLTWGY+I
Sbjct: 66293 V**NLGLTWGYMI 66255
Score = 141 bits (303), Expect(2) = 3e-081
Identities = 67/78 (85%), Positives = 69/78 (88%)
Frame = -3 / +2
Query: 544 YFLQ*FL*SSIPKSSQGFITPL*CRVAAFSISTWLIP*SCPRPDSTHESSKGYTRS*KAS 365
Y LQ* L*S IPKSSQGFITPL*CRVAAFSIST LIP*SCPRPD THESSKGYTRS*KAS
Sbjct: 66233 YSLQ*LL*SCIPKSSQGFITPL*CRVAAFSIST*LIP*SCPRPD*THESSKGYTRS*KAS 66412
Query: 364 RPAGSACSR*DFRLSFRN 311
+ AGSA +R DFR SFRN
Sbjct: 66413 KLAGSA*NRCDFRRSFRN 66466
Score = 120 bits (256), Expect(2) = 8e-066
Identities = 52/66 (78%), Positives = 56/66 (84%)
Frame = -1 / +3
Query: 504 QAKVSSHHCSAE*QPSLYRHG*FHNHVQGLTQPMNLPKDIPGLERQVDLQGVLAVAEISG 325
QAKVSSHH SAE*QP LYR *FHNHVQGL +PMNLPKDIP LERQV+LQGV +A ISG
Sbjct: 66273 QAKVSSHHYSAE*QPFLYRRD*FHNHVQGLIEPMNLPKDIPDLERQVNLQGVPEIAVISG 66452
Query: 324 CPFATS 307
PFAT+
Sbjct: 66453 GPFATA 66470
Score = 111 bits (237), Expect(5) = 4e-058
Identities = 48/60 (80%), Positives = 54/60 (90%)
Frame = +3 / -2
Query: 309 KLRKDSLKSQRLQALPAGLLAFQDLVYPLEDSWVESGLGHDYGISHVDIEKAATLHYNGV 488
+LRK+SLKSQR QAL A LLAFQ LVYPLEDSWV+SGLGHD GIS+V+IEKAATL +NGV
Sbjct: 51917 QLRKNSLKSQRTQALVASLLAFQVLVYPLEDSWVQSGLGHDCGISYVNIEKAATLQHNGV 51738
Score = 107 bits (229), Expect(3) = 2e-043
Identities = 41/59 (69%), Positives = 46/59 (77%)
Frame = +2 / -1
Query: 311 VAKGQPEISATASTPCRSTCLSRPGISFGRFMG*VRPWT*LWNQPCRYREGCYSALQWC 487
V K QPEI+A ST C+ TCLS ISFGRFMG +RPWT*LWNQ C+YR+GCYSA WC
Sbjct: 51915 VEKEQPEITANTSTGCKFTCLSSSSISFGRFMGSIRPWT*LWNQLCQYRKGCYSAA*WC 51739
Score = 100 bits (213), Expect(3) = 2e-044
Identities = 43/60 (71%), Positives = 48/60 (80%)
Frame = -1 / +2
Query: 486 HHCSAE*QPSLYRHG*FHNHVQGLTQPMNLPKDIPGLERQVDLQGVLAVAEISGCPFATS 307
HH +AE*QP LY H *FHNHVQGL +PMNLPKDI LERQV+LQ VL A ISGC F+T+
Sbjct: 51740 HHYAAE*QPFLY*HN*FHNHVQGLIEPMNLPKDILELERQVNLQPVLVFAVISGCSFSTA 51919
Score = 100 bits (213), Expect(3) = 5e-053
Identities = 47/60 (78%), Positives = 52/60 (86%)
Frame = -2 / +3
Query: 488 HTIVVQSSSLLYIDMADSIIMSKA*LNP*IFQRIYQVLKGK*TCRECLQSLRFQAVLSQL 309
+TI++QSSSL YID+ DS IMSKA*LNP*IFQRIY LKGK*TC +CL SL FQAVLSQL
Sbjct: 51738 YTIMLQSSSLFYIDITDSTIMSKA*LNP*IFQRIY*NLKGK*TCNQCLCSL*FQAVLSQL 51917
Score = 99.6 bits (211), Expect(3) = 2e-033
Identities = 44/57 (77%), Positives = 49/57 (85%)
Frame = +1 / -3
Query: 316 ERTA*NLSDCKHSLQVYLPFKTWYILWKIHGLSQALDMIMESAMSI*RRLLLCTTMV 486
ERTA*N S+ KH LQVYLPFK YILWKIHG +QALDMI+ES MSI*+RLLLC+ MV
Sbjct: 51910 ERTA*NHSEHKHWLQVYLPFKF*YILWKIHGFNQALDMIVESVMSI*KRLLLCSIMV 51740
Score = 99.6 bits (211), Expect(3) = 3e-037
Identities = 46/59 (77%), Positives = 48/59 (81%)
Frame = -3 / +1
Query: 487 TPL*CRVAAFSISTWLIP*SCPRPDSTHESSKGYTRS*KASRPAGSACSR*DFRLSFRN 311
TPL CRVAAFSI T LIP SCPRPD THESSKGYTR+*KAS+ A SAC R DFRL F N
Sbjct: 51739 TPLCCRVAAFSILT*LIPQSCPRPD*THESSKGYTRT*KASKLATSACVRCDFRLFFLN 51915
Score = 87.2 bits (184), Expect(5) = 4e-058
Identities = 35/44 (79%), Positives = 40/44 (90%)
Frame = +3 / -3
Query: 183 KPYIADHNVDDDSCVWLSGLNVIELDKWRDTGITSLHDQSVQKL 314
K IADHNV+ +SCVWLSGLNVIELDKWRDTGITSL+D S+QK+
Sbjct: 52204 KKTIADHNVNANSCVWLSGLNVIELDKWRDTGITSLYD*SLQKV 52073
Score = 86.3 bits (182), Expect(3) = 5e-053
Identities = 34/40 (85%), Positives = 37/40 (92%)
Frame = -3 / +3
Query: 310 FWTD*SCKLVMPVSLHLSNSMTFRPDNHTHESSSTLWSAI 191
FW+D*S KLVMPVSLHLSNSMTFRPDNHTHE + TLWSA+
Sbjct: 52077 FWSD*SYKLVMPVSLHLSNSMTFRPDNHTHELALTLWSAM 52196
Score = 78.0 bits (164), Expect(3) = 5e-053
Identities = 32/44 (72%), Positives = 38/44 (86%)
Frame = -3 / +2
Query: 160 QNWTAPITLPPISRFHRGDKSFWTIKSSSRTTTLFKLGRRSGKR 29
QNWTAPITL PISRF++ +KSF TIKSSSRTTTLFK+GR ++
Sbjct: 52259 QNWTAPITLLPISRFNKDNKSFCTIKSSSRTTTLFKVGRSGKRK 52390
Score = 78.0 bits (164), Expect(3) = 2e-044
Identities = 32/42 (76%), Positives = 37/42 (88%)
Frame = -2 / +2
Query: 317 SQLLD*LIMQTGNASVPPFIQFNDIQARQPHT*IIIDVMVCY 192
+ LL+ LI+QT +A VPPFIQFNDIQARQPHT*I ID+MVCY
Sbjct: 52070 TDLLERLIIQTRDAGVPPFIQFNDIQARQPHT*ISIDIMVCY 52195
Score = 74.8 bits (157), Expect(3) = 2e-043
Identities = 31/39 (79%), Positives = 34/39 (87%)
Frame = +1 / -1
Query: 193 *QTITSMMIHVCGCRA*MSLNWINGGTLALPVCMINQSR 309
*QTI SM+IHVCGC A*MSLNWINGGT A VCMIN+S+
Sbjct: 52194 *QTIMSMLIHVCGCLA*MSLNWINGGTPASRVCMINRSK 52078
Score = 74.8 bits (157), Expect(5) = 4e-058
Identities = 33/38 (86%), Positives = 34/38 (89%)
Frame = +3 / -1
Query: 45 LPSLNRVVVLDDDLIVQKDLSPLWNLDMGGKVIGAVQF 158
LP+LNRVVVLDDDLIVQKDL L NLDMG KVIGAVQF
Sbjct: 52374 LPTLNRVVVLDDDLIVQKDLLSLLNLDMGSKVIGAVQF 52261
Score = 73.5 bits (154), Expect(3) = 3e-037
Identities = 29/39 (74%), Positives = 32/39 (82%)
Frame = -1 / +1
Query: 306 GLIDHANW*CQCPSIYPIQ*HSGPTTTHMNHHRRYGLLY 190
G I+H N *C+CPSIYPIQ*HSG TTTHMN H YGLL+
Sbjct: 52081 GAINHTNS*CRCPSIYPIQ*HSGQTTTHMN*H*HYGLLW 52197
Score = 65.7 bits (137), Expect(3) = 2e-033
Identities = 29/46 (63%), Positives = 35/46 (76%)
Frame = +2 / -2
Query: 191 YSRP*RR**FMCVVVGPECH*IG*MEGHWHYQFA*SISPEVAKGQP 328
+SRP* + *FMCVVV PECH*IG*MEGH H++F * I+P+ P
Sbjct: 52196 HSRP*CQC*FMCVVVWPECH*IG*MEGHRHHEFV*LIAPKGQLNSP 52059
Score = 57.4 bits (119), Expect(3) = 2e-044
Identities = 24/38 (63%), Positives = 30/38 (78%)
Frame = -1 / +3
Query: 159 RTGLLQSLYHPYRGSIEVTSPSGQSNHHPEQLLYSS*E 46
RTG +SLY+PY+GS ++T+ S QSNH PEQLL S *E
Sbjct: 52260 RTGQHRSLYYPYQGSTKITNLSAQSNHRPEQLLCSR*E 52373
Score = 50.1 bits (103), Expect(3) = 2e-043
Identities = 26/40 (65%), Positives = 28/40 (70%)
Frame = +1 / -2
Query: 46 FLA*IE*LFWMMI*LSRRTCHLYGTSIWVVK*LEQSSSVE 165
FL * E*LFW MI*L R+ C+L T IWVVK* SSS E
Sbjct: 52373 FLP*TE*LFWTMI*LCRKICYLC*TLIWVVK*SVLSSSGE 52254
Score = 38.6 bits (78), Expect(3) = 3e-037
Identities = 21/52 (40%), Positives = 27/52 (51%)
Frame = -2 / +1
Query: 185 FQLP*SHSTELDCSNHFTTHIEVP*R*QVLLDXXXXXXXXXXXQARKKVRQE 30
F P S ELD ++HFTTHI+V R*Q+ L Q RK ++E
Sbjct: 52234 FNCPNLTSPELDSTDHFTTHIKVQQR*QIFLHNQIIVQNNYSVQGRKVRQEE 52389
Score = 33.1 bits (66), Expect(3) = 2e-033
Identities = 17/29 (58%), Positives = 18/29 (62%)
Frame = +2 / -3
Query: 74 G**FDCPEGLVTSMEPRYGW*SDWSSPVL 160
G *FDC E V +EP YG *SD PVL
Sbjct: 52345 GR*FDCAERFVIFVEP*YG**SDRCCPVL 52259
Score = 29.5 bits (58), Expect(5) = 4e-058
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2 / -3
Query: 2 HIYLRPFTFPLA*P 43
H+Y +PF FPLA*P
Sbjct: 52414 HMYFQPFKFPLA*P 52373
Score = 29.0 bits (57), Expect(5) = 4e-058
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +3 / -2
Query: 495 PWLDLGILDY 524
PWLDLG+LDY
Sbjct: 51737 PWLDLGLLDY 51708
>gb|BI212063.1|BI212063 IP1_61_B03.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 648
Score = 184 bits (397), Expect = 7e-046
Identities = 70/146 (47%), Positives = 100/146 (68%)
Frame = +3 / +1
Query: 111 LWNLDMGGKVIGAVQFCGVRLGQLKPYIADHNVDDDSCVWLSGLNVIELDKWRDTGITSL 290
LWN+DMG KV GAV+ CG++LG++K + D + C W+SG+N+I LDKWR+ +T
Sbjct: 4 LWNIDMGDKVNGAVELCGLKLGEMKNVLGKTAYDPNLCAWMSGVNLINLDKWREHNVTEN 183
Query: 291 HDQSVQKLRKDSLKSQRLQALPAGLLAFQDLVYPLEDSWVESGLGHDYGISHVDIEKAAT 470
+ ++K + S R A P LL+FQ L+YPL++ +GLG+DYGI V ++A+
Sbjct: 184 YLLLMKKFKFKDELSLRAAAFPLSLLSFQHLIYPLDEKLTLAGLGYDYGIDEVVARRSAS 363
Query: 471 LHYNGVMKPWLDLGILDYKNYWRKYL 548
LHYNG MKPWL+LGI DYK YW+++L
Sbjct: 364 LHYNGNMKPWLELGIPDYKKYWKRFL 441
>gb|CN140420.1|CN140420 OX1_36_B10.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_36_B10_A002 3', mRNA sequence
Length = 836
Score = 84.0 bits (177), Expect(3) = 3e-034
Identities = 32/69 (46%), Positives = 44/69 (63%)
Frame = +3 / +3
Query: 339 RLQALPAGLLAFQDLVYPLEDSWVESGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGIL 518
+L LP GL+ F PLE SW GLG++ IS +I AA +H+NG MKPWLD+G+
Sbjct: 399 KLGTLPPGLITFYSTTKPLEKSWHVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGMN 578
Query: 519 DYKNYWRKY 545
+++ W KY
Sbjct: 579 QFRHLWTKY 605
Score = 71.2 bits (149), Expect(3) = 3e-034
Identities = 26/53 (49%), Positives = 39/53 (73%)
Frame = +3 / +3
Query: 3 ISIFGLSHFLLPDLLPSLNRVVVLDDDLIVQKDLSPLWNLDMGGKVIGAVQFC 161
+S+ F LP++ P L+R++ LDDD++VQ+DL+ LW +DM GKV GAV+ C
Sbjct: 51 LSMLNHLRFYLPEMYPKLHRILFLDDDVVVQRDLTGLWKIDMDGKVNGAVETC 209
Score = 29.0 bits (57), Expect(3) = 3e-034
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +3 / +3
Query: 216 DSCVWLSGLNVIELDKWR 269
++C W G+N +LD WR
Sbjct: 282 NACGWAYGMNFFDLDSWR 335
>gb|CD210962.1|CD210962 HS1_58_B05.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_58_B05_A012 3', mRNA sequence
Length = 733
Score = 143 bits (306), Expect = 3e-033
Identities = 54/113 (47%), Positives = 77/113 (68%)
Frame = +3 / +1
Query: 210 DDDSCVWLSGLNVIELDKWRDTGITSLHDQSVQKLRKDSLKSQRLQALPAGLLAFQDLVY 389
D + C W+SG+N+I LDKWR+ +T + ++K + S R A P LL+FQ L+Y
Sbjct: 4 DPNLCAWMSGVNLINLDKWREHNVTENYLLLMKKFKFKDELSLRAAAFPLSLLSFQHLIY 183
Query: 390 PLEDSWVESGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGILDYKNYWRKYL 548
PL++ +GLG+DYGI V ++A+LHYNG MKPWL+LGI DYK YW+++L
Sbjct: 184 PLDEKLTLAGLGYDYGIDEVVARRSASLHYNGNMKPWLELGIPDYKKYWKRFL 342
>gb|CW037385.1|CW037385 104_269_10504310_115_30384 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10504310, DNA
sequence
Length = 689
Score = 135 bits (289), Expect = 6e-031
Identities = 49/94 (52%), Positives = 72/94 (76%)
Frame = +3 / +2
Query: 3 ISIFGLSHFLLPDLLPSLNRVVVLDDDLIVQKDLSPLWNLDMGGKVIGAVQFCGVRLGQL 182
+S+F SHF++P++ LN+VVVLDDD++VQ+DLS LWN+DMG KV GAV+ CG++LG++
Sbjct: 71 LSLFSHSHFVIPEIFKYLNKVVVLDDDVVVQRDLSFLWNIDMGDKVNGAVELCGLKLGEM 250
Query: 183 KPYIADHNVDDDSCVWLSGLNVIELDKWRDTGIT 284
K + D + C W+SG+N+I LDKWR+ +T
Sbjct: 251 KNVLGKTAYDPNLCAWMSGVNLINLDKWREHNVT 352
>gb|CN149194.1|CN149194 WOUND1_61_F10.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_61_F10_A002 3', mRNA sequence
Length = 807
Score = 84.0 bits (177), Expect(3) = 6e-030
Identities = 32/70 (45%), Positives = 45/70 (64%)
Frame = +3 / +2
Query: 339 RLQALPAGLLAFQDLVYPLEDSWVESGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGIL 518
+L LP GL+ F PLE SW GLG++ IS +I AA +H+NG MKPWLD+G+
Sbjct: 296 KLGTLPPGLITFYSTTKPLERSWHVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGMN 475
Query: 519 DYKNYWRKYL 548
+++ W KY+
Sbjct: 476 QFRHLWTKYV 505
Score = 56.5 bits (117), Expect(3) = 6e-030
Identities = 20/35 (57%), Positives = 29/35 (82%)
Frame = +3 / +2
Query: 57 NRVVVLDDDLIVQKDLSPLWNLDMGGKVIGAVQFC 161
+R++ LDDD++VQ+DL+ LW +DM GKV GAV+ C
Sbjct: 2 HRILFLDDDVVVQRDLTGLWKIDMDGKVNGAVETC 106
Score = 29.0 bits (57), Expect(3) = 6e-030
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +3 / +2
Query: 216 DSCVWLSGLNVIELDKWR 269
++C W G+N +LD WR
Sbjct: 179 NACGWAYGMNFFDLDSWR 232
>gb|BI139893.1|BI139893 IP1_47_A12.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 598
Score = 96.8 bits (205), Expect(2) = 7e-030
Identities = 37/115 (32%), Positives = 62/115 (53%)
Frame = +3 / +2
Query: 204 NVDDDSCVWLSGLNVIELDKWRDTGITSLHDQSVQKLRKDSLKSQRLQALPAGLLAFQDL 383
++D D C W G+N+ +L WR T I + +++ K L + LP L+AF+
Sbjct: 179 SLDPDECAWAYGMNIFDLAAWRKTNIRDTYHFWLKENLKSGLTLWKFGTLPPALIAFRGH 358
Query: 384 VYPLEDSWVESGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGILDYKNYWRKYL 548
V+ ++ SW GLG+ + +AA +HYNG KPWLD+ + + +W K++
Sbjct: 359 VHGIDPSWHLLGLGYQDKTDIESVRRAAVIHYNGQCKPWLDIAFKNLQPFWTKHV 523
Score = 54.7 bits (113), Expect(2) = 7e-030
Identities = 20/32 (62%), Positives = 27/32 (84%)
Frame = +3 / +2
Query: 66 VVLDDDLIVQKDLSPLWNLDMGGKVIGAVQFC 161
V LDDD++VQ+DLSPLW +++ GKV GAV+ C
Sbjct: 8 VFLDDDIVVQRDLSPLWAINLEGKVNGAVETC 103
>gb|CW306008.1|CW306008 104_791_11466607_148_36273_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11466607, DNA
sequence
Length = 675
Score = 78.0 bits (164), Expect(3) = 8e-026
Identities = 31/66 (46%), Positives = 40/66 (60%)
Frame = +3 / -1
Query: 351 LPAGLLAFQDLVYPLEDSWVESGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGILDYKN 530
LP GL+ F PL+ SW GLG++ I DI AA +H+NG MKPWLD+ YK+
Sbjct: 252 LPVGLMTFYGKTKPLDKSWHVMGLGYNPHIRPEDIGGAAVIHFNGNMKPWLDVAFNQYKH 73
Query: 531 YWRKYL 548
W KY+
Sbjct: 72 LWTKYV 55
Score = 51.5 bits (106), Expect(3) = 8e-026
Identities = 19/36 (52%), Positives = 27/36 (75%)
Frame = +3 / -3
Query: 54 LNRVVVLDDDLIVQKDLSPLWNLDMGGKVIGAVQFC 161
L RVV+L+DD++VQ+DL+ LW +DMG V A+ C
Sbjct: 673 LRRVVLLEDDVVVQRDLAGLWRVDMGANVNAALHTC 566
Score = 27.6 bits (54), Expect(3) = 8e-026
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3 / -3
Query: 219 SCVWLSGLNVIELDKWR 269
+C W G+NV +L WR
Sbjct: 490 ACAWSYGVNVFDLQGWR 440
>gb|BZ628082.1|BZ628082 ih57h02.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ih57h02 5', DNA sequence
Length = 469
Score = 107 bits (228), Expect = 2e-022
Identities = 40/72 (55%), Positives = 53/72 (73%)
Frame = +3 / -3
Query: 333 SQRLQALPAGLLAFQDLVYPLEDSWVESGLGHDYGISHVDIEKAATLHYNGVMKPWLDLG 512
S R A P LL+FQ L+YPL++ +GLG+DYGI V ++A+LHYNG MKPWL+LG
Sbjct: 392 SLRAAAFPLSLLSFQHLIYPLDEKLTLAGLGYDYGIDEVVARRSASLHYNGNMKPWLELG 213
Query: 513 ILDYKNYWRKYL 548
I DYK YW+++L
Sbjct: 212 IPDYKKYWKRFL 177
>gb|CF487333.1|CF487333 POL1_43_D11.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_43_D11_A002 3', mRNA sequence
Length = 661
Score = 90.9 bits (192), Expect(2) = 2e-022
Identities = 34/70 (48%), Positives = 46/70 (65%)
Frame = +3 / +2
Query: 339 RLQALPAGLLAFQDLVYPLEDSWVESGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGIL 518
+L LP GLL F L +PL+ SW GLG++ I +I+ AA +HYNG MKPWL+L +
Sbjct: 158 KLGTLPPGLLTFYKLTHPLDKSWHVLGLGYNPSIDRSEIDSAAVVHYNGNMKPWLELAMT 337
Query: 519 DYKNYWRKYL 548
Y+ YW KY+
Sbjct: 338 KYRPYWTKYI 367
Score = 35.4 bits (71), Expect(2) = 2e-022
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3 / +2
Query: 204 NVDDDSCVWLSGLNVIELDKWRDTGITSLH 293
N D ++C W G+N+ +L +W+ IT ++
Sbjct: 29 NFDPNACGWAYGMNIFDLREWKKKDITGIY 118
>gb|CF485968.1|CF485968 POL1_34_H03.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_34_H03_A002 5', mRNA sequence
Length = 620
Score = 106 bits (226), Expect = 3e-022
Identities = 41/76 (53%), Positives = 54/76 (71%)
Frame = +3 / +1
Query: 321 DSLKSQRLQALPAGLLAFQDLVYPLEDSWVESGLGHDYGISHVDIEKAATLHYNGVMKPW 500
D S R ALP LL+FQ L+YPL++ SGLG+DYGI + +A+LHYNG MKPW
Sbjct: 46 DDEASLRASALPISLLSFQHLLYPLDERLTLSGLGYDYGIKEEVAQSSASLHYNGNMKPW 225
Query: 501 LDLGILDYKNYWRKYL 548
L+LGI DY+ YW+++L
Sbjct: 226 LELGIPDYRKYWKRFL 273
>gb|CW144377.1|CW144377 104_536_11137911_148_34962_056 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11137911, DNA
sequence
Length = 622
Score = 90.9 bits (192), Expect(2) = 5e-022
Identities = 34/70 (48%), Positives = 46/70 (65%)
Frame = +3 / +2
Query: 339 RLQALPAGLLAFQDLVYPLEDSWVESGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGIL 518
+L LP GLL F L +PL+ SW GLG++ I +I+ AA +HYNG MKPWL+L +
Sbjct: 299 KLGTLPPGLLTFYKLTHPLDKSWHVLGLGYNPSIDRSEIDSAAVVHYNGNMKPWLELAMT 478
Query: 519 DYKNYWRKYL 548
Y+ YW KY+
Sbjct: 479 KYRPYWTKYI 508
Score = 35.4 bits (71), Expect(2) = 5e-022
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3 / +2
Query: 204 NVDDDSCVWLSGLNVIELDKWRDTGITSLH 293
N D ++C W G+N+ +L +W+ IT ++
Sbjct: 35 NFDPNACGWAYGMNIFDLREWKKKDITGIY 124
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 714,580,064
Number of Sequences: 832831
Number of extensions: 10382893
Number of successful extensions: 87792
Number of sequences better than 1.0e-020: 18
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 15912986229
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)