TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE8g03.yg.2.1
(360 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW213623.1|CW213623 104_645_11191655_116_37034_092 Sorgh... 161 1e-051
gb|BZ412900.1|BZ412900 181g10_ctg5 Subclones from BAC clone... 161 1e-051
gb|CW190601.1|CW190601 104_612_11174591_148_36758_092 Sorgh... 161 4e-048
gb|BG054057.1|BG054057 OV2_1_H05.g1_A002 Ovary 2 (OV2) Sorg... 156 5e-047
gb|BE596045.1|BE596045 PI1_51_F11.g1_A002 Pathogen induced ... 156 8e-047
gb|CW213624.1|CW213624 104_645_11191655_148_37035_092 Sorgh... 161 6e-042
gb|BG464782.1|BG464782 EM1_34_B02.g1_A002 Embryo 1 (EM1) So... 110 1e-041
gb|CL167258.1|CL167258 104_364_10809943_114_31802_007 Sorgh... 161 3e-039
gb|CW191376.1|CW191376 104_613_11178463_116_36939_026 Sorgh... 161 3e-039
gb|CL167259.1|CL167259 104_364_10809943_116_31803_007 Sorgh... 161 3e-039
gb|CW349038.1|CW349038 fsbb001f009l06f0 Sorghum methylation... 99 5e-033
>gb|CW213623.1|CW213623 104_645_11191655_116_37034_092 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11191655, DNA
sequence
Length = 683
Score = 161 bits (347), Expect(3) = 1e-051
Identities = 68/80 (85%), Positives = 71/80 (88%)
Frame = -3 / +2
Query: 241 CCK*LQKKFRYLFVRWGLYVGNMYLITGEHGDTDHEEMLSGLHKTVIVRGVTEKGSEGLL 62
C K + FRYLFVRWGL VGNMYLITGEHGDTD EEMLSGLHKTVIVRGVTEKGSE LL
Sbjct: 311 CNKQTKTNFRYLFVRWGLSVGNMYLITGEHGDTDLEEMLSGLHKTVIVRGVTEKGSEALL 490
Query: 61 RSPGSYKKDDVVPSETPLAA 2
RS GSYK+DDVVP+ETPLAA
Sbjct: 491 RSSGSYKRDDVVPTETPLAA 550
Score = 150 bits (323), Expect(2) = 6e-045
Identities = 61/85 (71%), Positives = 64/85 (75%)
Frame = -2 / +1
Query: 257 NFCQPMLQITTKKIQVSFCALGPICGEHVSDHWGTWRHRS*GDAIWVTQDCDCPGCHRER 78
N + Q + QV F ALGPICGEHVSDHWGTWR+RS GDAIWVTQDC PGCHRE
Sbjct: 295 NLAANL*QTNKNQFQVPFRALGPICGEHVSDHWGTWRYRSRGDAIWVTQDCHRPGCHREG 474
Query: 77 FGRAAEEPRKLQEGRRRAV*DPLGC 3
FG AAEE KLQEGRRR *DPLGC
Sbjct: 475 FGSAAEELGKLQEGRRRPD*DPLGC 549
Score = 148 bits (317), Expect(2) = 4e-043
Identities = 62/81 (76%), Positives = 66/81 (81%)
Frame = -1 / +3
Query: 243 NVANNYKKNSGIFLCAGAYMWGTCI*SLGNMATPIMRRCYLGYTRL*LSGVSPRKVRKGC 64
+V N K SG F CAGAY+WGTCI*SLGNMA PI RRCYLGYTRL SGVSPR+VRK C
Sbjct: 309 SVTNKQKPISGTFSCAGAYLWGTCI*SLGNMAIPI*RRCYLGYTRLSSSGVSPRRVRKRC 488
Query: 63 *GAQEATRRTTSCRLRPPWLR 1
*GA+E TR TTS RLRPPWLR
Sbjct: 489 *GAREVTRGTTSSRLRPPWLR 551
Score = 144 bits (309), Expect(3) = 1e-045
Identities = 61/79 (77%), Positives = 68/79 (86%)
Frame = +1 / -1
Query: 1 TQPRGSQTARRRPSCSFLGSSAALPNLSR*HPGQSQSCVTQIASPHDRCRHVPQ*SDTCS 180
TQPRGSQ+ RRRPSC+F SSAALPN SR*HPG+ QSCVTQIASP DR RHVPQ*SDTCS
Sbjct: 551 TQPRGSQSGRRRPSCNFPSSSAALPNPSR*HPGR*QSCVTQIASPLDRYRHVPQ*SDTCS 372
Query: 181 PHIGPSAQKDT*IFFVVIC 237
P IGPSA+K T* +F+ +C
Sbjct: 371 PQIGPSARKGT*NWFLFVC 315
Score = 136 bits (291), Expect(3) = 7e-043
Identities = 61/80 (76%), Positives = 65/80 (81%)
Frame = +2 / -2
Query: 2 RSQGGLRRHDVVLLVASWAPQQPFRTFLGDTPDNHSLV*PR*HLLMIGVAMFPSDQIHVP 181
RSQGGL R DVV LV S APQQ FRT LGDTPD+ SLV*PR*HLL IG+AMFPSDQIHVP
Sbjct: 550 RSQGGLSRDDVVPLVTSRAPQQRFRTLLGDTPDDDSLV*PR*HLL*IGIAMFPSDQIHVP 371
Query: 182 HI*APAHKKIPEFFL*LFAT 241
H *APAH+K+PE LF T
Sbjct: 370 HR*APAHEKVPEIGFCLFVT 311
Score = 51.0 bits (105), Expect(3) = 1e-051
Identities = 20/22 (90%), Positives = 20/22 (90%)
Frame = -1 / +2
Query: 360 TAGTRQGFRLSLC*HQGHRHSG 295
TAGTRQ FRLS C*HQGHRHSG
Sbjct: 161 TAGTRQDFRLSPC*HQGHRHSG 226
Score = 50.1 bits (103), Expect(2) = 6e-045
Identities = 22/24 (91%), Positives = 23/24 (95%)
Frame = -3 / +1
Query: 358 CRNSTRLQVVPLLASRSQALR*EH 287
CRN+TRLQVVPLLASRSQALR* H
Sbjct: 163 CRNATRLQVVPLLASRSQALR*CH 234
Score = 48.7 bits (100), Expect(3) = 7e-043
Identities = 21/22 (95%), Positives = 21/22 (95%)
Frame = +3 / -1
Query: 294 YLSACDLDASRGTT*SLVEFLQ 359
YLSACDLDASRGTT*SLV FLQ
Sbjct: 227 YLSACDLDASRGTT*SLVAFLQ 162
Score = 48.7 bits (100), Expect(3) = 1e-045
Identities = 20/22 (90%), Positives = 20/22 (90%)
Frame = +2 / -3
Query: 293 LPECL*P*C*QRDNLKPCRVPA 358
LPECL*P*C*Q DNLK CRVPA
Sbjct: 228 LPECL*P*C*QGDNLKSCRVPA 163
Score = 46.9 bits (96), Expect(2) = 4e-043
Identities = 19/25 (76%), Positives = 21/25 (84%)
Frame = -2 / +3
Query: 359 LQELDKASGCPSASIKVTGTQVRTH 285
LQE DK SGCP ASIKVTGTQV ++
Sbjct: 162 LQERDKTSGCPPASIKVTGTQVMSY 236
Score = 29.0 bits (57), Expect(3) = 1e-051
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = -2 / +1
Query: 287 HT*SSLKLSWNF 252
HT SSLKLSWNF
Sbjct: 232 HTESSLKLSWNF 267
Score = 28.1 bits (55), Expect(3) = 1e-045
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +3 / -3
Query: 249 AEVPRQLQARLCM 287
+E+PR+LQAR CM
Sbjct: 270 SEIPRELQARFCM 232
Score = 27.2 bits (53), Expect(3) = 7e-043
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +1 / -1
Query: 250 QKFHDSFKLDYV 285
QKFH+SFKLD V
Sbjct: 269 QKFHESFKLDSV 234
>gb|BZ412900.1|BZ412900 181g10_ctg5 Subclones from BAC clones mapped to Sorghum bicolor
chromosome 3 Sorghum bicolor genomic clone 181g10, DNA
sequence
Length = 697
Score = 161 bits (347), Expect(3) = 1e-051
Identities = 68/80 (85%), Positives = 71/80 (88%)
Frame = -3 / +2
Query: 241 CCK*LQKKFRYLFVRWGLYVGNMYLITGEHGDTDHEEMLSGLHKTVIVRGVTEKGSEGLL 62
C K + FRYLFVRWGL VGNMYLITGEHGDTD EEMLSGLHKTVIVRGVTEKGSE LL
Sbjct: 230 CNKQTKTNFRYLFVRWGLSVGNMYLITGEHGDTDLEEMLSGLHKTVIVRGVTEKGSEALL 409
Query: 61 RSPGSYKKDDVVPSETPLAA 2
RS GSYK+DDVVP+ETPLAA
Sbjct: 410 RSSGSYKRDDVVPTETPLAA 469
Score = 150 bits (323), Expect(2) = 6e-045
Identities = 61/85 (71%), Positives = 64/85 (75%)
Frame = -2 / +1
Query: 257 NFCQPMLQITTKKIQVSFCALGPICGEHVSDHWGTWRHRS*GDAIWVTQDCDCPGCHRER 78
N + Q + QV F ALGPICGEHVSDHWGTWR+RS GDAIWVTQDC PGCHRE
Sbjct: 214 NLAANL*QTNKNQFQVPFRALGPICGEHVSDHWGTWRYRSRGDAIWVTQDCHRPGCHREG 393
Query: 77 FGRAAEEPRKLQEGRRRAV*DPLGC 3
FG AAEE KLQEGRRR *DPLGC
Sbjct: 394 FGSAAEELGKLQEGRRRPD*DPLGC 468
Score = 148 bits (317), Expect(2) = 4e-043
Identities = 62/81 (76%), Positives = 66/81 (81%)
Frame = -1 / +3
Query: 243 NVANNYKKNSGIFLCAGAYMWGTCI*SLGNMATPIMRRCYLGYTRL*LSGVSPRKVRKGC 64
+V N K SG F CAGAY+WGTCI*SLGNMA PI RRCYLGYTRL SGVSPR+VRK C
Sbjct: 228 SVTNKQKPISGTFSCAGAYLWGTCI*SLGNMAIPI*RRCYLGYTRLSSSGVSPRRVRKRC 407
Query: 63 *GAQEATRRTTSCRLRPPWLR 1
*GA+E TR TTS RLRPPWLR
Sbjct: 408 *GAREVTRGTTSSRLRPPWLR 470
Score = 144 bits (309), Expect(3) = 1e-045
Identities = 61/79 (77%), Positives = 68/79 (86%)
Frame = +1 / -3
Query: 1 TQPRGSQTARRRPSCSFLGSSAALPNLSR*HPGQSQSCVTQIASPHDRCRHVPQ*SDTCS 180
TQPRGSQ+ RRRPSC+F SSAALPN SR*HPG+ QSCVTQIASP DR RHVPQ*SDTCS
Sbjct: 470 TQPRGSQSGRRRPSCNFPSSSAALPNPSR*HPGR*QSCVTQIASPLDRYRHVPQ*SDTCS 291
Query: 181 PHIGPSAQKDT*IFFVVIC 237
P IGPSA+K T* +F+ +C
Sbjct: 290 PQIGPSARKGT*NWFLFVC 234
Score = 136 bits (291), Expect(3) = 8e-043
Identities = 61/80 (76%), Positives = 65/80 (81%)
Frame = +2 / -1
Query: 2 RSQGGLRRHDVVLLVASWAPQQPFRTFLGDTPDNHSLV*PR*HLLMIGVAMFPSDQIHVP 181
RSQGGL R DVV LV S APQQ FRT LGDTPD+ SLV*PR*HLL IG+AMFPSDQIHVP
Sbjct: 469 RSQGGLSRDDVVPLVTSRAPQQRFRTLLGDTPDDDSLV*PR*HLL*IGIAMFPSDQIHVP 290
Query: 182 HI*APAHKKIPEFFL*LFAT 241
H *APAH+K+PE LF T
Sbjct: 289 HR*APAHEKVPEIGFCLFVT 230
Score = 51.0 bits (105), Expect(3) = 1e-051
Identities = 20/22 (90%), Positives = 20/22 (90%)
Frame = -1 / +2
Query: 360 TAGTRQGFRLSLC*HQGHRHSG 295
TAGTRQ FRLS C*HQGHRHSG
Sbjct: 80 TAGTRQDFRLSPC*HQGHRHSG 145
Score = 50.1 bits (103), Expect(2) = 6e-045
Identities = 22/24 (91%), Positives = 23/24 (95%)
Frame = -3 / +1
Query: 358 CRNSTRLQVVPLLASRSQALR*EH 287
CRN+TRLQVVPLLASRSQALR* H
Sbjct: 82 CRNATRLQVVPLLASRSQALR*CH 153
Score = 48.7 bits (100), Expect(3) = 1e-045
Identities = 20/22 (90%), Positives = 20/22 (90%)
Frame = +2 / -2
Query: 293 LPECL*P*C*QRDNLKPCRVPA 358
LPECL*P*C*Q DNLK CRVPA
Sbjct: 147 LPECL*P*C*QGDNLKSCRVPA 82
Score = 48.7 bits (100), Expect(3) = 8e-043
Identities = 21/22 (95%), Positives = 21/22 (95%)
Frame = +3 / -3
Query: 294 YLSACDLDASRGTT*SLVEFLQ 359
YLSACDLDASRGTT*SLV FLQ
Sbjct: 146 YLSACDLDASRGTT*SLVAFLQ 81
Score = 46.9 bits (96), Expect(2) = 4e-043
Identities = 19/25 (76%), Positives = 21/25 (84%)
Frame = -2 / +3
Query: 359 LQELDKASGCPSASIKVTGTQVRTH 285
LQE DK SGCP ASIKVTGTQV ++
Sbjct: 81 LQERDKTSGCPPASIKVTGTQVMSY 155
Score = 29.0 bits (57), Expect(3) = 1e-051
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = -2 / +1
Query: 287 HT*SSLKLSWNF 252
HT SSLKLSWNF
Sbjct: 151 HTESSLKLSWNF 186
Score = 28.1 bits (55), Expect(3) = 1e-045
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +3 / -2
Query: 249 AEVPRQLQARLCM 287
+E+PR+LQAR CM
Sbjct: 189 SEIPRELQARFCM 151
Score = 27.2 bits (53), Expect(3) = 8e-043
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +1 / -3
Query: 250 QKFHDSFKLDYV 285
QKFH+SFKLD V
Sbjct: 188 QKFHESFKLDSV 153
>gb|CW190601.1|CW190601 104_612_11174591_148_36758_092 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11174591, DNA
sequence
Length = 625
Score = 161 bits (347), Expect(3) = 4e-048
Identities = 68/80 (85%), Positives = 71/80 (88%)
Frame = -3 / +1
Query: 241 CCK*LQKKFRYLFVRWGLYVGNMYLITGEHGDTDHEEMLSGLHKTVIVRGVTEKGSEGLL 62
C K + FRYLFVRWGL VGNMYLITGEHGDTD EEMLSGLHKTVIVRGVTEKGSE LL
Sbjct: 130 CNKQTKTNFRYLFVRWGLSVGNMYLITGEHGDTDLEEMLSGLHKTVIVRGVTEKGSEALL 309
Query: 61 RSPGSYKKDDVVPSETPLAA 2
RS GSYK+DDVVP+ETPLAA
Sbjct: 310 RSSGSYKRDDVVPTETPLAA 369
Score = 150 bits (323), Expect(2) = 5e-041
Identities = 61/85 (71%), Positives = 64/85 (75%)
Frame = -2 / +3
Query: 257 NFCQPMLQITTKKIQVSFCALGPICGEHVSDHWGTWRHRS*GDAIWVTQDCDCPGCHRER 78
N + Q + QV F ALGPICGEHVSDHWGTWR+RS GDAIWVTQDC PGCHRE
Sbjct: 114 NLAANL*QTNKNQFQVPFRALGPICGEHVSDHWGTWRYRSRGDAIWVTQDCHRPGCHREG 293
Query: 77 FGRAAEEPRKLQEGRRRAV*DPLGC 3
FG AAEE KLQEGRRR *DPLGC
Sbjct: 294 FGSAAEELGKLQEGRRRPD*DPLGC 368
Score = 148 bits (317), Expect(2) = 2e-039
Identities = 62/81 (76%), Positives = 66/81 (81%)
Frame = -1 / +2
Query: 243 NVANNYKKNSGIFLCAGAYMWGTCI*SLGNMATPIMRRCYLGYTRL*LSGVSPRKVRKGC 64
+V N K SG F CAGAY+WGTCI*SLGNMA PI RRCYLGYTRL SGVSPR+VRK C
Sbjct: 128 SVTNKQKPISGTFSCAGAYLWGTCI*SLGNMAIPI*RRCYLGYTRLSSSGVSPRRVRKRC 307
Query: 63 *GAQEATRRTTSCRLRPPWLR 1
*GA+E TR TTS RLRPPWLR
Sbjct: 308 *GAREVTRGTTSSRLRPPWLR 370
Score = 144 bits (309), Expect(3) = 2e-042
Identities = 61/79 (77%), Positives = 68/79 (86%)
Frame = +1 / -1
Query: 1 TQPRGSQTARRRPSCSFLGSSAALPNLSR*HPGQSQSCVTQIASPHDRCRHVPQ*SDTCS 180
TQPRGSQ+ RRRPSC+F SSAALPN SR*HPG+ QSCVTQIASP DR RHVPQ*SDTCS
Sbjct: 370 TQPRGSQSGRRRPSCNFPSSSAALPNPSR*HPGR*QSCVTQIASPLDRYRHVPQ*SDTCS 191
Query: 181 PHIGPSAQKDT*IFFVVIC 237
P IGPSA+K T* +F+ +C
Sbjct: 190 PQIGPSARKGT*NWFLFVC 134
Score = 136 bits (291), Expect(3) = 9e-039
Identities = 61/80 (76%), Positives = 65/80 (81%)
Frame = +2 / -2
Query: 2 RSQGGLRRHDVVLLVASWAPQQPFRTFLGDTPDNHSLV*PR*HLLMIGVAMFPSDQIHVP 181
RSQGGL R DVV LV S APQQ FRT LGDTPD+ SLV*PR*HLL IG+AMFPSDQIHVP
Sbjct: 369 RSQGGLSRDDVVPLVTSRAPQQRFRTLLGDTPDDDSLV*PR*HLL*IGIAMFPSDQIHVP 190
Query: 182 HI*APAHKKIPEFFL*LFAT 241
H *APAH+K+PE LF T
Sbjct: 189 HR*APAHEKVPEIGFCLFVT 130
Score = 37.7 bits (76), Expect(3) = 4e-048
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = -1 / +1
Query: 339 FRLSLC*HQGHRHSG 295
FRLS C*HQGHRHSG
Sbjct: 1 FRLSPC*HQGHRHSG 45
Score = 36.8 bits (74), Expect(3) = 2e-042
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +3 / -1
Query: 294 YLSACDLDASRGTT* 338
YLSACDLDASRGTT*
Sbjct: 46 YLSACDLDASRGTT* 2
Score = 36.3 bits (73), Expect(2) = 5e-041
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = -2 / +2
Query: 338 SGCPSASIKVTGTQVRTH 285
SGCP ASIKVTGTQV ++
Sbjct: 2 SGCPPASIKVTGTQVMSY 55
Score = 34.1 bits (68), Expect(2) = 2e-039
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = -3 / +3
Query: 337 QVVPLLASRSQALR*EH 287
QVVPLLASRSQALR* H
Sbjct: 3 QVVPLLASRSQALR*CH 53
Score = 33.6 bits (67), Expect(3) = 9e-039
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +2 / -3
Query: 293 LPECL*P*C*QRDNL 337
LPECL*P*C*Q DNL
Sbjct: 47 LPECL*P*C*QGDNL 3
Score = 29.0 bits (57), Expect(3) = 4e-048
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = -2 / +3
Query: 287 HT*SSLKLSWNF 252
HT SSLKLSWNF
Sbjct: 51 HTESSLKLSWNF 86
Score = 28.1 bits (55), Expect(3) = 2e-042
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +3 / -3
Query: 249 AEVPRQLQARLCM 287
+E+PR+LQAR CM
Sbjct: 89 SEIPRELQARFCM 51
Score = 27.2 bits (53), Expect(3) = 9e-039
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +1 / -1
Query: 250 QKFHDSFKLDYV 285
QKFH+SFKLD V
Sbjct: 88 QKFHESFKLDSV 53
>gb|BG054057.1|BG054057 OV2_1_H05.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 585
Score = 156 bits (335), Expect(2) = 5e-047
Identities = 65/71 (91%), Positives = 67/71 (94%)
Frame = -3 / +2
Query: 214 RYLFVRWGLYVGNMYLITGEHGDTDHEEMLSGLHKTVIVRGVTEKGSEGLLRSPGSYKKD 35
RYLFVRWGL VGNMYLITGEHGDTD EEMLSGLHKTVIVRGVTEKGSE LLRS GSYK+D
Sbjct: 101 RYLFVRWGLSVGNMYLITGEHGDTDLEEMLSGLHKTVIVRGVTEKGSEALLRSSGSYKRD 280
Query: 34 DVVPSETPLAA 2
DVVP+ETPLAA
Sbjct: 281 DVVPTETPLAA 313
Score = 149 bits (321), Expect = 1e-035
Identities = 61/81 (75%), Positives = 62/81 (76%)
Frame = -2 / +1
Query: 245 PMLQITTKKIQVSFCALGPICGEHVSDHWGTWRHRS*GDAIWVTQDCDCPGCHRERFGRA 66
P I QV F ALGPICGEHVSDHWGTWR+RS GDAIWVTQDC PGCHRE FG A
Sbjct: 70 PPASIKVTGTQVPFRALGPICGEHVSDHWGTWRYRSRGDAIWVTQDCHRPGCHREGFGSA 249
Query: 65 AEEPRKLQEGRRRAV*DPLGC 3
AEE KLQEGRRR *DPLGC
Sbjct: 250 AEELGKLQEGRRRPD*DPLGC 312
Score = 144 bits (309), Expect(2) = 1e-042
Identities = 59/74 (79%), Positives = 64/74 (86%)
Frame = -1 / +3
Query: 222 KNSGIFLCAGAYMWGTCI*SLGNMATPIMRRCYLGYTRL*LSGVSPRKVRKGC*GAQEAT 43
++SG F CAGAY+WGTCI*SLGNMA PI RRCYLGYTRL SGVSPR+VRK C*GA+E T
Sbjct: 93 RHSGTFSCAGAYLWGTCI*SLGNMAIPI*RRCYLGYTRLSSSGVSPRRVRKRC*GAREVT 272
Query: 42 RRTTSCRLRPPWLR 1
R TTS RLRPPWLR
Sbjct: 273 RGTTSSRLRPPWLR 314
Score = 138 bits (296), Expect(2) = 5e-041
Identities = 59/73 (80%), Positives = 64/73 (87%)
Frame = +1 / -2
Query: 1 TQPRGSQTARRRPSCSFLGSSAALPNLSR*HPGQSQSCVTQIASPHDRCRHVPQ*SDTCS 180
TQPRGSQ+ RRRPSC+F SSAALPN SR*HPG+ QSCVTQIASP DR RHVPQ*SDTCS
Sbjct: 314 TQPRGSQSGRRRPSCNFPSSSAALPNPSR*HPGR*QSCVTQIASPLDRYRHVPQ*SDTCS 135
Query: 181 PHIGPSAQKDT*I 219
P IGPSA+K T*+
Sbjct: 134 PQIGPSARKGT*V 96
Score = 132 bits (283), Expect(2) = 7e-039
Identities = 58/72 (80%), Positives = 62/72 (86%)
Frame = +2 / -3
Query: 2 RSQGGLRRHDVVLLVASWAPQQPFRTFLGDTPDNHSLV*PR*HLLMIGVAMFPSDQIHVP 181
RSQGGL R DVV LV S APQQ FRT LGDTPD+ SLV*PR*HLL IG+AMFPSDQIHVP
Sbjct: 313 RSQGGLSRDDVVPLVTSRAPQQRFRTLLGDTPDDDSLV*PR*HLL*IGIAMFPSDQIHVP 134
Query: 182 HI*APAHKKIPE 217
H *APAH+K+PE
Sbjct: 133 HR*APAHEKVPE 98
Score = 51.0 bits (105), Expect(2) = 5e-047
Identities = 20/22 (90%), Positives = 20/22 (90%)
Frame = -1 / +3
Query: 360 TAGTRQGFRLSLC*HQGHRHSG 295
TAGTRQ FRLS C*HQGHRHSG
Sbjct: 39 TAGTRQDFRLSPC*HQGHRHSG 104
Score = 48.7 bits (100), Expect(2) = 5e-041
Identities = 21/22 (95%), Positives = 21/22 (95%)
Frame = +3 / -1
Query: 294 YLSACDLDASRGTT*SLVEFLQ 359
YLSACDLDASRGTT*SLV FLQ
Sbjct: 105 YLSACDLDASRGTT*SLVAFLQ 40
Score = 47.8 bits (98), Expect(2) = 1e-042
Identities = 20/21 (95%), Positives = 21/21 (100%)
Frame = -3 / +2
Query: 358 CRNSTRLQVVPLLASRSQALR 296
CRN+TRLQVVPLLASRSQALR
Sbjct: 41 CRNATRLQVVPLLASRSQALR 103
Score = 47.3 bits (97), Expect(2) = 7e-039
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = +2 / -3
Query: 293 LPECL*P*C*QRDNLKPCRVPA 358
+PECL*P*C*Q DNLK CRVPA
Sbjct: 106 VPECL*P*C*QGDNLKSCRVPA 41
>gb|BE596045.1|BE596045 PI1_51_F11.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 700
Score = 156 bits (335), Expect(2) = 8e-047
Identities = 65/71 (91%), Positives = 67/71 (94%)
Frame = -3 / +1
Query: 214 RYLFVRWGLYVGNMYLITGEHGDTDHEEMLSGLHKTVIVRGVTEKGSEGLLRSPGSYKKD 35
RYLFVRWGL VGNMYLITGEHGDTD EEMLSGLHKTVIVRGVTEKGSE LLRS GSYK+D
Sbjct: 211 RYLFVRWGLSVGNMYLITGEHGDTDLEEMLSGLHKTVIVRGVTEKGSEALLRSSGSYKRD 390
Query: 34 DVVPSETPLAA 2
DVVP+ETPLAA
Sbjct: 391 DVVPTETPLAA 423
Score = 149 bits (321), Expect = 1e-035
Identities = 61/81 (75%), Positives = 62/81 (76%)
Frame = -2 / +3
Query: 245 PMLQITTKKIQVSFCALGPICGEHVSDHWGTWRHRS*GDAIWVTQDCDCPGCHRERFGRA 66
P I QV F ALGPICGEHVSDHWGTWR+RS GDAIWVTQDC PGCHRE FG A
Sbjct: 180 PPASIKVTGTQVPFRALGPICGEHVSDHWGTWRYRSRGDAIWVTQDCHRPGCHREGFGSA 359
Query: 65 AEEPRKLQEGRRRAV*DPLGC 3
AEE KLQEGRRR *DPLGC
Sbjct: 360 AEELGKLQEGRRRPD*DPLGC 422
Score = 144 bits (309), Expect(2) = 2e-042
Identities = 59/74 (79%), Positives = 64/74 (86%)
Frame = -1 / +2
Query: 222 KNSGIFLCAGAYMWGTCI*SLGNMATPIMRRCYLGYTRL*LSGVSPRKVRKGC*GAQEAT 43
++SG F CAGAY+WGTCI*SLGNMA PI RRCYLGYTRL SGVSPR+VRK C*GA+E T
Sbjct: 203 RHSGTFSCAGAYLWGTCI*SLGNMAIPI*RRCYLGYTRLSSSGVSPRRVRKRC*GAREVT 382
Query: 42 RRTTSCRLRPPWLR 1
R TTS RLRPPWLR
Sbjct: 383 RGTTSSRLRPPWLR 424
Score = 138 bits (296), Expect(2) = 8e-041
Identities = 59/73 (80%), Positives = 64/73 (87%)
Frame = +1 / -1
Query: 1 TQPRGSQTARRRPSCSFLGSSAALPNLSR*HPGQSQSCVTQIASPHDRCRHVPQ*SDTCS 180
TQPRGSQ+ RRRPSC+F SSAALPN SR*HPG+ QSCVTQIASP DR RHVPQ*SDTCS
Sbjct: 424 TQPRGSQSGRRRPSCNFPSSSAALPNPSR*HPGR*QSCVTQIASPLDRYRHVPQ*SDTCS 245
Query: 181 PHIGPSAQKDT*I 219
P IGPSA+K T*+
Sbjct: 244 PQIGPSARKGT*V 206
Score = 132 bits (283), Expect(2) = 1e-038
Identities = 58/72 (80%), Positives = 62/72 (86%)
Frame = +2 / -2
Query: 2 RSQGGLRRHDVVLLVASWAPQQPFRTFLGDTPDNHSLV*PR*HLLMIGVAMFPSDQIHVP 181
RSQGGL R DVV LV S APQQ FRT LGDTPD+ SLV*PR*HLL IG+AMFPSDQIHVP
Sbjct: 423 RSQGGLSRDDVVPLVTSRAPQQRFRTLLGDTPDDDSLV*PR*HLL*IGIAMFPSDQIHVP 244
Query: 182 HI*APAHKKIPE 217
H *APAH+K+PE
Sbjct: 243 HR*APAHEKVPE 208
Score = 51.0 bits (105), Expect(2) = 8e-047
Identities = 20/22 (90%), Positives = 20/22 (90%)
Frame = -1 / +2
Query: 360 TAGTRQGFRLSLC*HQGHRHSG 295
TAGTRQ FRLS C*HQGHRHSG
Sbjct: 149 TAGTRQDFRLSPC*HQGHRHSG 214
Score = 48.7 bits (100), Expect(2) = 8e-041
Identities = 21/22 (95%), Positives = 21/22 (95%)
Frame = +3 / -3
Query: 294 YLSACDLDASRGTT*SLVEFLQ 359
YLSACDLDASRGTT*SLV FLQ
Sbjct: 215 YLSACDLDASRGTT*SLVAFLQ 150
Score = 47.8 bits (98), Expect(2) = 2e-042
Identities = 20/21 (95%), Positives = 21/21 (100%)
Frame = -3 / +1
Query: 358 CRNSTRLQVVPLLASRSQALR 296
CRN+TRLQVVPLLASRSQALR
Sbjct: 151 CRNATRLQVVPLLASRSQALR 213
Score = 47.3 bits (97), Expect(2) = 1e-038
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = +2 / -2
Query: 293 LPECL*P*C*QRDNLKPCRVPA 358
+PECL*P*C*Q DNLK CRVPA
Sbjct: 216 VPECL*P*C*QGDNLKSCRVPA 151
>gb|CW213624.1|CW213624 104_645_11191655_148_37035_092 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11191655, DNA
sequence
Length = 696
Score = 161 bits (347), Expect(2) = 6e-042
Identities = 68/80 (85%), Positives = 71/80 (88%)
Frame = -3 / -2
Query: 241 CCK*LQKKFRYLFVRWGLYVGNMYLITGEHGDTDHEEMLSGLHKTVIVRGVTEKGSEGLL 62
C K + FRYLFVRWGL VGNMYLITGEHGDTD EEMLSGLHKTVIVRGVTEKGSE LL
Sbjct: 599 CNKQTKTNFRYLFVRWGLSVGNMYLITGEHGDTDLEEMLSGLHKTVIVRGVTEKGSEALL 420
Query: 61 RSPGSYKKDDVVPSETPLAA 2
RS GSYK+DDVVP+ETPLAA
Sbjct: 419 RSSGSYKRDDVVPTETPLAA 360
Score = 150 bits (323), Expect = 6e-036
Identities = 61/85 (71%), Positives = 64/85 (75%)
Frame = -2 / -1
Query: 257 NFCQPMLQITTKKIQVSFCALGPICGEHVSDHWGTWRHRS*GDAIWVTQDCDCPGCHRER 78
N + Q + QV F ALGPICGEHVSDHWGTWR+RS GDAIWVTQDC PGCHRE
Sbjct: 615 NLAANL*QTNKNQFQVPFRALGPICGEHVSDHWGTWRYRSRGDAIWVTQDCHRPGCHREG 436
Query: 77 FGRAAEEPRKLQEGRRRAV*DPLGC 3
FG AAEE KLQEGRRR *DPLGC
Sbjct: 435 FGSAAEELGKLQEGRRRPD*DPLGC 361
Score = 148 bits (317), Expect = 4e-035
Identities = 62/81 (76%), Positives = 66/81 (81%)
Frame = -1 / -3
Query: 243 NVANNYKKNSGIFLCAGAYMWGTCI*SLGNMATPIMRRCYLGYTRL*LSGVSPRKVRKGC 64
+V N K SG F CAGAY+WGTCI*SLGNMA PI RRCYLGYTRL SGVSPR+VRK C
Sbjct: 601 SVTNKQKPISGTFSCAGAYLWGTCI*SLGNMAIPI*RRCYLGYTRLSSSGVSPRRVRKRC 422
Query: 63 *GAQEATRRTTSCRLRPPWLR 1
*GA+E TR TTS RLRPPWLR
Sbjct: 421 *GAREVTRGTTSSRLRPPWLR 359
Score = 144 bits (309), Expect(2) = 2e-036
Identities = 61/79 (77%), Positives = 68/79 (86%)
Frame = +1 / +2
Query: 1 TQPRGSQTARRRPSCSFLGSSAALPNLSR*HPGQSQSCVTQIASPHDRCRHVPQ*SDTCS 180
TQPRGSQ+ RRRPSC+F SSAALPN SR*HPG+ QSCVTQIASP DR RHVPQ*SDTCS
Sbjct: 359 TQPRGSQSGRRRPSCNFPSSSAALPNPSR*HPGR*QSCVTQIASPLDRYRHVPQ*SDTCS 538
Query: 181 PHIGPSAQKDT*IFFVVIC 237
P IGPSA+K T* +F+ +C
Sbjct: 539 PQIGPSARKGT*NWFLFVC 595
Score = 136 bits (291), Expect(2) = 1e-033
Identities = 61/80 (76%), Positives = 65/80 (81%)
Frame = +2 / +3
Query: 2 RSQGGLRRHDVVLLVASWAPQQPFRTFLGDTPDNHSLV*PR*HLLMIGVAMFPSDQIHVP 181
RSQGGL R DVV LV S APQQ FRT LGDTPD+ SLV*PR*HLL IG+AMFPSDQIHVP
Sbjct: 360 RSQGGLSRDDVVPLVTSRAPQQRFRTLLGDTPDDDSLV*PR*HLL*IGIAMFPSDQIHVP 539
Query: 182 HI*APAHKKIPEFFL*LFAT 241
H *APAH+K+PE LF T
Sbjct: 540 HR*APAHEKVPEIGFCLFVT 599
Score = 29.0 bits (57), Expect(2) = 6e-042
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = -2 / -1
Query: 287 HT*SSLKLSWNF 252
HT SSLKLSWNF
Sbjct: 678 HTESSLKLSWNF 643
Score = 28.1 bits (55), Expect(2) = 2e-036
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +3 / +1
Query: 249 AEVPRQLQARLCM 287
+E+PR+LQAR CM
Sbjct: 640 SEIPRELQARFCM 678
Score = 27.2 bits (53), Expect(2) = 1e-033
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +1 / +2
Query: 250 QKFHDSFKLDYV 285
QKFH+SFKLD V
Sbjct: 641 QKFHESFKLDSV 676
>gb|BG464782.1|BG464782 EM1_34_B02.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 281
Score = 110 bits (234), Expect(3) = 1e-041
Identities = 45/48 (93%), Positives = 46/48 (95%)
Frame = -3 / +2
Query: 214 RYLFVRWGLYVGNMYLITGEHGDTDHEEMLSGLHKTVIVRGVTEKGSE 71
RYLFVRWGL VGNMYLITGEHGDTD EEMLSGLHKTVIVRGVTEKGS+
Sbjct: 50 RYLFVRWGLSVGNMYLITGEHGDTDLEEMLSGLHKTVIVRGVTEKGSK 193
Score = 110 bits (234), Expect(2) = 7e-031
Identities = 42/57 (73%), Positives = 43/57 (75%)
Frame = -2 / +1
Query: 245 PMLQITTKKIQVSFCALGPICGEHVSDHWGTWRHRS*GDAIWVTQDCDCPGCHRERF 75
P I QV F ALGPICGEHVSDHWGTWR+RS GDAIWVTQDC PGCHRE F
Sbjct: 19 PPASIKVTGTQVPFRALGPICGEHVSDHWGTWRYRSRGDAIWVTQDCHRPGCHREGF 189
Score = 99.6 bits (211), Expect(3) = 1e-036
Identities = 40/50 (80%), Positives = 44/50 (88%)
Frame = -1 / +3
Query: 222 KNSGIFLCAGAYMWGTCI*SLGNMATPIMRRCYLGYTRL*LSGVSPRKVR 73
++SG F CAGAY+WGTCI*SLGNMA PI RRCYLGYTRL SGVSPR+VR
Sbjct: 42 RHSGTFSCAGAYLWGTCI*SLGNMAIPI*RRCYLGYTRLSSSGVSPRRVR 191
Score = 96.8 bits (205), Expect(3) = 1e-036
Identities = 40/48 (83%), Positives = 44/48 (91%)
Frame = +2 / -2
Query: 74 RTFLGDTPDNHSLV*PR*HLLMIGVAMFPSDQIHVPHI*APAHKKIPE 217
RT LGDTPD+ SLV*PR*HLL IG+AMFPSDQIHVPH *APAH+K+PE
Sbjct: 190 RTLLGDTPDDDSLV*PR*HLL*IGIAMFPSDQIHVPHR*APAHEKVPE 47
Score = 90.9 bits (192), Expect(3) = 1e-031
Identities = 39/48 (81%), Positives = 42/48 (87%)
Frame = +1 / -1
Query: 76 NLSR*HPGQSQSCVTQIASPHDRCRHVPQ*SDTCSPHIGPSAQKDT*I 219
N SR*HPG+ QSCVTQIASP DR RHVPQ*SDTCSP IGPSA+K T*+
Sbjct: 188 NPSR*HPGR*QSCVTQIASPLDRYRHVPQ*SDTCSPQIGPSARKGT*V 45
Score = 53.3 bits (110), Expect(3) = 1e-041
Identities = 22/31 (70%), Positives = 25/31 (80%)
Frame = -3 / +1
Query: 94 GVTEKGSEGLLRSPGSYKKDDVVPSETPLAA 2
G +G E LLRS GSYK+DDVVP+ETPLAA
Sbjct: 169 GCHREGFEALLRSSGSYKRDDVVPTETPLAA 261
Score = 48.3 bits (99), Expect(3) = 1e-036
Identities = 20/27 (74%), Positives = 21/27 (77%)
Frame = -1 / +2
Query: 81 KVRKGC*GAQEATRRTTSCRLRPPWLR 1
K K C*GA+E TR TTS RLRPPWLR
Sbjct: 182 KGSKRC*GAREVTRGTTSSRLRPPWLR 262
Score = 48.3 bits (99), Expect(3) = 1e-036
Identities = 20/27 (74%), Positives = 22/27 (81%)
Frame = +1 / -2
Query: 1 TQPRGSQTARRRPSCSFLGSSAALPNL 81
TQPRGSQ+ RRRPSC+F SSAAL L
Sbjct: 262 TQPRGSQSGRRRPSCNFPSSSAALRTL 182
Score = 42.3 bits (86), Expect(3) = 1e-036
Identities = 18/18 (100%), Positives = 18/18 (100%)
Frame = +3 / -3
Query: 294 YLSACDLDASRGTT*SLV 347
YLSACDLDASRGTT*SLV
Sbjct: 54 YLSACDLDASRGTT*SLV 1
Score = 41.8 bits (85), Expect(2) = 7e-031
Identities = 20/31 (64%), Positives = 20/31 (64%)
Frame = -2 / +3
Query: 95 GCHRERFGRAAEEPRKLQEGRRRAV*DPLGC 3
G R AAEE KLQEGRRR *DPLGC
Sbjct: 168 GVSPRRVRSAAEELGKLQEGRRRPD*DPLGC 260
Score = 40.9 bits (83), Expect(3) = 1e-031
Identities = 19/27 (70%), Positives = 19/27 (70%)
Frame = +2 / -3
Query: 2 RSQGGLRRHDVVLLVASWAPQQPFRTF 82
RSQGGL R DVV LV S APQQ F F
Sbjct: 261 RSQGGLSRDDVVPLVTSRAPQQRFEPF 181
Score = 40.5 bits (82), Expect(3) = 1e-041
Identities = 16/18 (88%), Positives = 16/18 (88%)
Frame = -2 / +1
Query: 347 DKASGCPSASIKVTGTQV 294
DK SGCP ASIKVTGTQV
Sbjct: 1 DKTSGCPPASIKVTGTQV 54
Score = 39.6 bits (80), Expect(3) = 1e-036
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = -1 / +3
Query: 345 QGFRLSLC*HQGHRHSG 295
Q FRLS C*HQGHRHSG
Sbjct: 3 QDFRLSPC*HQGHRHSG 53
Score = 38.2 bits (77), Expect(3) = 1e-031
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +2 / -2
Query: 293 LPECL*P*C*QRDNLKPC 346
+PECL*P*C*Q DNLK C
Sbjct: 55 VPECL*P*C*QGDNLKSC 2
>gb|CL167258.1|CL167258 104_364_10809943_114_31802_007 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10809943, DNA
sequence
Length = 720
Score = 161 bits (347), Expect = 3e-039
Identities = 68/80 (85%), Positives = 71/80 (88%)
Frame = -3 / -1
Query: 241 CCK*LQKKFRYLFVRWGLYVGNMYLITGEHGDTDHEEMLSGLHKTVIVRGVTEKGSEGLL 62
C K + FRYLFVRWGL VGNMYLITGEHGDTD EEMLSGLHKTVIVRGVTEKGSE LL
Sbjct: 657 CNKQTKTNFRYLFVRWGLSVGNMYLITGEHGDTDLEEMLSGLHKTVIVRGVTEKGSEALL 478
Query: 61 RSPGSYKKDDVVPSETPLAA 2
RS GSYK+DDVVP+ETPLAA
Sbjct: 477 RSSGSYKRDDVVPTETPLAA 418
Score = 150 bits (323), Expect = 6e-036
Identities = 61/85 (71%), Positives = 64/85 (75%)
Frame = -2 / -3
Query: 257 NFCQPMLQITTKKIQVSFCALGPICGEHVSDHWGTWRHRS*GDAIWVTQDCDCPGCHRER 78
N + Q + QV F ALGPICGEHVSDHWGTWR+RS GDAIWVTQDC PGCHRE
Sbjct: 673 NLAANL*QTNKNQFQVPFRALGPICGEHVSDHWGTWRYRSRGDAIWVTQDCHRPGCHREG 494
Query: 77 FGRAAEEPRKLQEGRRRAV*DPLGC 3
FG AAEE KLQEGRRR *DPLGC
Sbjct: 493 FGSAAEELGKLQEGRRRPD*DPLGC 419
Score = 148 bits (317), Expect = 4e-035
Identities = 62/81 (76%), Positives = 66/81 (81%)
Frame = -1 / -2
Query: 243 NVANNYKKNSGIFLCAGAYMWGTCI*SLGNMATPIMRRCYLGYTRL*LSGVSPRKVRKGC 64
+V N K SG F CAGAY+WGTCI*SLGNMA PI RRCYLGYTRL SGVSPR+VRK C
Sbjct: 659 SVTNKQKPISGTFSCAGAYLWGTCI*SLGNMAIPI*RRCYLGYTRLSSSGVSPRRVRKRC 480
Query: 63 *GAQEATRRTTSCRLRPPWLR 1
*GA+E TR TTS RLRPPWLR
Sbjct: 479 *GAREVTRGTTSSRLRPPWLR 417
Score = 144 bits (309), Expect = 5e-034
Identities = 61/79 (77%), Positives = 68/79 (86%)
Frame = +1 / +3
Query: 1 TQPRGSQTARRRPSCSFLGSSAALPNLSR*HPGQSQSCVTQIASPHDRCRHVPQ*SDTCS 180
TQPRGSQ+ RRRPSC+F SSAALPN SR*HPG+ QSCVTQIASP DR RHVPQ*SDTCS
Sbjct: 417 TQPRGSQSGRRRPSCNFPSSSAALPNPSR*HPGR*QSCVTQIASPLDRYRHVPQ*SDTCS 596
Query: 181 PHIGPSAQKDT*IFFVVIC 237
P IGPSA+K T* +F+ +C
Sbjct: 597 PQIGPSARKGT*NWFLFVC 653
Score = 136 bits (291), Expect = 2e-031
Identities = 61/80 (76%), Positives = 65/80 (81%)
Frame = +2 / +1
Query: 2 RSQGGLRRHDVVLLVASWAPQQPFRTFLGDTPDNHSLV*PR*HLLMIGVAMFPSDQIHVP 181
RSQGGL R DVV LV S APQQ FRT LGDTPD+ SLV*PR*HLL IG+AMFPSDQIHVP
Sbjct: 418 RSQGGLSRDDVVPLVTSRAPQQRFRTLLGDTPDDDSLV*PR*HLL*IGIAMFPSDQIHVP 597
Query: 182 HI*APAHKKIPEFFL*LFAT 241
H *APAH+K+PE LF T
Sbjct: 598 HR*APAHEKVPEIGFCLFVT 657
>gb|CW191376.1|CW191376 104_613_11178463_116_36939_026 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11178463, DNA
sequence
Length = 692
Score = 161 bits (347), Expect = 3e-039
Identities = 68/80 (85%), Positives = 71/80 (88%)
Frame = -3 / +3
Query: 241 CCK*LQKKFRYLFVRWGLYVGNMYLITGEHGDTDHEEMLSGLHKTVIVRGVTEKGSEGLL 62
C K + FRYLFVRWGL VGNMYLITGEHGDTD EEMLSGLHKTVIVRGVTEKGSE LL
Sbjct: 45 CNKQTKTNFRYLFVRWGLSVGNMYLITGEHGDTDLEEMLSGLHKTVIVRGVTEKGSEALL 224
Query: 61 RSPGSYKKDDVVPSETPLAA 2
RS GSYK+DDVVP+ETPLAA
Sbjct: 225 RSSGSYKRDDVVPTETPLAA 284
Score = 150 bits (323), Expect = 6e-036
Identities = 61/85 (71%), Positives = 64/85 (75%)
Frame = -2 / +2
Query: 257 NFCQPMLQITTKKIQVSFCALGPICGEHVSDHWGTWRHRS*GDAIWVTQDCDCPGCHRER 78
N + Q + QV F ALGPICGEHVSDHWGTWR+RS GDAIWVTQDC PGCHRE
Sbjct: 29 NLAANL*QTNKNQFQVPFRALGPICGEHVSDHWGTWRYRSRGDAIWVTQDCHRPGCHREG 208
Query: 77 FGRAAEEPRKLQEGRRRAV*DPLGC 3
FG AAEE KLQEGRRR *DPLGC
Sbjct: 209 FGSAAEELGKLQEGRRRPD*DPLGC 283
Score = 148 bits (317), Expect = 4e-035
Identities = 62/81 (76%), Positives = 66/81 (81%)
Frame = -1 / +1
Query: 243 NVANNYKKNSGIFLCAGAYMWGTCI*SLGNMATPIMRRCYLGYTRL*LSGVSPRKVRKGC 64
+V N K SG F CAGAY+WGTCI*SLGNMA PI RRCYLGYTRL SGVSPR+VRK C
Sbjct: 43 SVTNKQKPISGTFSCAGAYLWGTCI*SLGNMAIPI*RRCYLGYTRLSSSGVSPRRVRKRC 222
Query: 63 *GAQEATRRTTSCRLRPPWLR 1
*GA+E TR TTS RLRPPWLR
Sbjct: 223 *GAREVTRGTTSSRLRPPWLR 285
Score = 144 bits (309), Expect = 5e-034
Identities = 61/79 (77%), Positives = 68/79 (86%)
Frame = +1 / -3
Query: 1 TQPRGSQTARRRPSCSFLGSSAALPNLSR*HPGQSQSCVTQIASPHDRCRHVPQ*SDTCS 180
TQPRGSQ+ RRRPSC+F SSAALPN SR*HPG+ QSCVTQIASP DR RHVPQ*SDTCS
Sbjct: 285 TQPRGSQSGRRRPSCNFPSSSAALPNPSR*HPGR*QSCVTQIASPLDRYRHVPQ*SDTCS 106
Query: 181 PHIGPSAQKDT*IFFVVIC 237
P IGPSA+K T* +F+ +C
Sbjct: 105 PQIGPSARKGT*NWFLFVC 49
Score = 136 bits (291), Expect = 2e-031
Identities = 61/80 (76%), Positives = 65/80 (81%)
Frame = +2 / -1
Query: 2 RSQGGLRRHDVVLLVASWAPQQPFRTFLGDTPDNHSLV*PR*HLLMIGVAMFPSDQIHVP 181
RSQGGL R DVV LV S APQQ FRT LGDTPD+ SLV*PR*HLL IG+AMFPSDQIHVP
Sbjct: 284 RSQGGLSRDDVVPLVTSRAPQQRFRTLLGDTPDDDSLV*PR*HLL*IGIAMFPSDQIHVP 105
Query: 182 HI*APAHKKIPEFFL*LFAT 241
H *APAH+K+PE LF T
Sbjct: 104 HR*APAHEKVPEIGFCLFVT 45
>gb|CL167259.1|CL167259 104_364_10809943_116_31803_007 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10809943, DNA
sequence
Length = 641
Score = 161 bits (347), Expect(2) = 3e-039
Identities = 68/80 (85%), Positives = 71/80 (88%)
Frame = -3 / +1
Query: 241 CCK*LQKKFRYLFVRWGLYVGNMYLITGEHGDTDHEEMLSGLHKTVIVRGVTEKGSEGLL 62
C K + FRYLFVRWGL VGNMYLITGEHGDTD EEMLSGLHKTVIVRGVTEKGSE LL
Sbjct: 64 CNKQTKTNFRYLFVRWGLSVGNMYLITGEHGDTDLEEMLSGLHKTVIVRGVTEKGSEALL 243
Query: 61 RSPGSYKKDDVVPSETPLAA 2
RS GSYK+DDVVP+ETPLAA
Sbjct: 244 RSSGSYKRDDVVPTETPLAA 303
Score = 150 bits (323), Expect = 6e-036
Identities = 61/85 (71%), Positives = 64/85 (75%)
Frame = -2 / +3
Query: 257 NFCQPMLQITTKKIQVSFCALGPICGEHVSDHWGTWRHRS*GDAIWVTQDCDCPGCHRER 78
N + Q + QV F ALGPICGEHVSDHWGTWR+RS GDAIWVTQDC PGCHRE
Sbjct: 48 NLAANL*QTNKNQFQVPFRALGPICGEHVSDHWGTWRYRSRGDAIWVTQDCHRPGCHREG 227
Query: 77 FGRAAEEPRKLQEGRRRAV*DPLGC 3
FG AAEE KLQEGRRR *DPLGC
Sbjct: 228 FGSAAEELGKLQEGRRRPD*DPLGC 302
Score = 148 bits (317), Expect = 4e-035
Identities = 62/81 (76%), Positives = 66/81 (81%)
Frame = -1 / +2
Query: 243 NVANNYKKNSGIFLCAGAYMWGTCI*SLGNMATPIMRRCYLGYTRL*LSGVSPRKVRKGC 64
+V N K SG F CAGAY+WGTCI*SLGNMA PI RRCYLGYTRL SGVSPR+VRK C
Sbjct: 62 SVTNKQKPISGTFSCAGAYLWGTCI*SLGNMAIPI*RRCYLGYTRLSSSGVSPRRVRKRC 241
Query: 63 *GAQEATRRTTSCRLRPPWLR 1
*GA+E TR TTS RLRPPWLR
Sbjct: 242 *GAREVTRGTTSSRLRPPWLR 304
Score = 144 bits (309), Expect(2) = 5e-034
Identities = 61/79 (77%), Positives = 68/79 (86%)
Frame = +1 / -2
Query: 1 TQPRGSQTARRRPSCSFLGSSAALPNLSR*HPGQSQSCVTQIASPHDRCRHVPQ*SDTCS 180
TQPRGSQ+ RRRPSC+F SSAALPN SR*HPG+ QSCVTQIASP DR RHVPQ*SDTCS
Sbjct: 304 TQPRGSQSGRRRPSCNFPSSSAALPNPSR*HPGR*QSCVTQIASPLDRYRHVPQ*SDTCS 125
Query: 181 PHIGPSAQKDT*IFFVVIC 237
P IGPSA+K T* +F+ +C
Sbjct: 124 PQIGPSARKGT*NWFLFVC 68
Score = 136 bits (291), Expect = 2e-031
Identities = 61/80 (76%), Positives = 65/80 (81%)
Frame = +2 / -3
Query: 2 RSQGGLRRHDVVLLVASWAPQQPFRTFLGDTPDNHSLV*PR*HLLMIGVAMFPSDQIHVP 181
RSQGGL R DVV LV S APQQ FRT LGDTPD+ SLV*PR*HLL IG+AMFPSDQIHVP
Sbjct: 303 RSQGGLSRDDVVPLVTSRAPQQRFRTLLGDTPDDDSLV*PR*HLL*IGIAMFPSDQIHVP 124
Query: 182 HI*APAHKKIPEFFL*LFAT 241
H *APAH+K+PE LF T
Sbjct: 123 HR*APAHEKVPEIGFCLFVT 64
Score = 19.4 bits (36), Expect(2) = 5e-034
Identities = 6/7 (85%), Positives = 7/7 (100%)
Frame = +1 / -2
Query: 250 QKFHDSF 270
QKFH+SF
Sbjct: 22 QKFHESF 2
Score = 19.4 bits (36), Expect(2) = 3e-039
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -2 / +3
Query: 269 KLSWNF 252
KLSWNF
Sbjct: 3 KLSWNF 20
>gb|CW349038.1|CW349038 fsbb001f009l06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f009l06, DNA
sequence
Length = 741
Score = 99.1 bits (210), Expect(3) = 5e-033
Identities = 41/49 (83%), Positives = 42/49 (85%)
Frame = -3 / +3
Query: 241 CCK*LQKKFRYLFVRWGLYVGNMYLITGEHGDTDHEEMLSGLHKTVIVR 95
C K + FRYLFVRWGL VGNMYLITGEHGDTD EEMLSGLHKTVIVR
Sbjct: 594 CNKQTKTNFRYLFVRWGLSVGNMYLITGEHGDTDLEEMLSGLHKTVIVR 740
Score = 94.1 bits (199), Expect(2) = 5e-028
Identities = 36/54 (66%), Positives = 39/54 (72%)
Frame = -2 / +2
Query: 257 NFCQPMLQITTKKIQVSFCALGPICGEHVSDHWGTWRHRS*GDAIWVTQDCDCP 96
N + Q + QV F ALGPICGEHVSDHWGTWR+RS GDAIWVTQDC P
Sbjct: 578 NLAANL*QTNKNQFQVPFRALGPICGEHVSDHWGTWRYRSRGDAIWVTQDCHRP 739
Score = 89.0 bits (188), Expect(2) = 2e-025
Identities = 37/50 (74%), Positives = 39/50 (78%)
Frame = -1 / +1
Query: 243 NVANNYKKNSGIFLCAGAYMWGTCI*SLGNMATPIMRRCYLGYTRL*LSG 94
+V N K SG F CAGAY+WGTCI*SLGNMA PI RRCYLGYTRL SG
Sbjct: 592 SVTNKQKPISGTFSCAGAYLWGTCI*SLGNMAIPI*RRCYLGYTRLSSSG 741
Score = 87.2 bits (184), Expect(3) = 1e-028
Identities = 36/48 (75%), Positives = 41/48 (85%)
Frame = +1 / -1
Query: 94 PGQSQSCVTQIASPHDRCRHVPQ*SDTCSPHIGPSAQKDT*IFFVVIC 237
PG+ QSCVTQIASP DR RHVPQ*SDTCSP IGPSA+K T* +F+ +C
Sbjct: 741 PGR*QSCVTQIASPLDRYRHVPQ*SDTCSPQIGPSARKGT*NWFLFVC 598
Score = 86.3 bits (182), Expect(3) = 4e-028
Identities = 37/49 (75%), Positives = 41/49 (83%)
Frame = +2 / -2
Query: 95 PDNHSLV*PR*HLLMIGVAMFPSDQIHVPHI*APAHKKIPEFFL*LFAT 241
PD+ SLV*PR*HLL IG+AMFPSDQIHVPH *APAH+K+PE LF T
Sbjct: 740 PDDDSLV*PR*HLL*IGIAMFPSDQIHVPHR*APAHEKVPEIGFCLFVT 594
Score = 51.0 bits (105), Expect(3) = 5e-033
Identities = 20/22 (90%), Positives = 20/22 (90%)
Frame = -1 / +3
Query: 360 TAGTRQGFRLSLC*HQGHRHSG 295
TAGTRQ FRLS C*HQGHRHSG
Sbjct: 444 TAGTRQDFRLSPC*HQGHRHSG 509
Score = 50.1 bits (103), Expect(2) = 5e-028
Identities = 22/24 (91%), Positives = 23/24 (95%)
Frame = -3 / +2
Query: 358 CRNSTRLQVVPLLASRSQALR*EH 287
CRN+TRLQVVPLLASRSQALR* H
Sbjct: 446 CRNATRLQVVPLLASRSQALR*CH 517
Score = 48.7 bits (100), Expect(3) = 4e-028
Identities = 21/22 (95%), Positives = 21/22 (95%)
Frame = +3 / -1
Query: 294 YLSACDLDASRGTT*SLVEFLQ 359
YLSACDLDASRGTT*SLV FLQ
Sbjct: 510 YLSACDLDASRGTT*SLVAFLQ 445
Score = 48.7 bits (100), Expect(3) = 1e-028
Identities = 20/22 (90%), Positives = 20/22 (90%)
Frame = +2 / -3
Query: 293 LPECL*P*C*QRDNLKPCRVPA 358
LPECL*P*C*Q DNLK CRVPA
Sbjct: 511 LPECL*P*C*QGDNLKSCRVPA 446
Score = 46.9 bits (96), Expect(2) = 2e-025
Identities = 19/25 (76%), Positives = 21/25 (84%)
Frame = -2 / +1
Query: 359 LQELDKASGCPSASIKVTGTQVRTH 285
LQE DK SGCP ASIKVTGTQV ++
Sbjct: 445 LQERDKTSGCPPASIKVTGTQVMSY 519
Score = 29.0 bits (57), Expect(3) = 5e-033
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = -2 / +2
Query: 287 HT*SSLKLSWNF 252
HT SSLKLSWNF
Sbjct: 515 HTESSLKLSWNF 550
Score = 28.1 bits (55), Expect(3) = 1e-028
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +3 / -3
Query: 249 AEVPRQLQARLCM 287
+E+PR+LQAR CM
Sbjct: 553 SEIPRELQARFCM 515
Score = 27.2 bits (53), Expect(3) = 4e-028
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +1 / -1
Query: 250 QKFHDSFKLDYV 285
QKFH+SFKLD V
Sbjct: 552 QKFHESFKLDSV 517
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 490,607,716
Number of Sequences: 832831
Number of extensions: 7421632
Number of successful extensions: 351892
Number of sequences better than 1.0e-020: 13
length of database: 163,786,556
effective HSP length: 51
effective length of database: 121,312,175
effective search space used: 8249227900
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)