TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE36e08.yg.2.1
(352 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW260843.1|CW260843 104_727_11229185_116_35195_067 Sorgh... 262 2e-069
gb|CW317729.1|CW317729 104_809_11473568_148_35866_022 Sorgh... 262 2e-069
gb|CW090817.1|CW090817 104_436_10949489_114_32604_065 Sorgh... 235 2e-061
gb|CW246411.1|CW246411 104_707_11221331_148_35088_044 Sorgh... 150 6e-042
gb|CW246412.1|CW246412 104_707_11221331_148_37606_044 Sorgh... 150 6e-042
gb|CW148316.1|CW148316 104_542_11140356_116_35003_034 Sorgh... 146 3e-040
gb|CW104104.1|CW104104 104_473_11012249_116_34444_079 Sorgh... 145 3e-040
gb|CW456969.1|CW456969 fsbb001f202j05k0 Sorghum methylation... 163 8e-040
gb|CW329817.1|CW329817 104_826_11480043_148_35996_008 Sorgh... 109 1e-038
gb|CW246410.1|CW246410 104_707_11221331_116_35084_044 Sorgh... 150 1e-037
gb|CW222901.1|CW222901 104_658_11202621_116_37181_087 Sorgh... 109 2e-037
gb|CW229880.1|CW229880 104_671_11207551_148_37265_026 Sorgh... 150 6e-036
gb|CW321938.1|CW321938 104_815_11475822_116_35944_023 Sorgh... 109 2e-035
gb|CX615412.1|CX615412 GABR1_20_B03.b1_A002 GA- or brassino... 136 1e-031
gb|CW268542.1|CW268542 104_739_11401361_148_35310_073 Sorgh... 123 8e-028
gb|CF071060.1|CF071060 FE1_15_G11.b1_A002 Iron-deficient se... 104 1e-025
gb|CX615427.1|CX615427 GABR1_20_C07.b1_A002 GA- or brassino... 112 2e-024
gb|CW184226.1|CW184226 104_600_11165041_116_36681_007 Sorgh... 68 2e-021
>gb|CW260843.1|CW260843 104_727_11229185_116_35195_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11229185, DNA
sequence
Length = 629
Score = 262 bits (566), Expect = 2e-069
Identities = 102/117 (87%), Positives = 107/117 (91%)
Frame = -1 / +3
Query: 352 PFCQGXXXXXXGASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVP 173
PFCQG GASM VSFQLP+TVSLLQAHYHHIPGVFT+DFPA PPVFFDFTSQNVP
Sbjct: 21 PFCQGPNNTRFGASMNNVSFQLPNTVSLLQAHYHHIPGVFTEDFPAFPPVFFDFTSQNVP 200
Query: 172 RALWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYDP 2
RALWQPVKGT+LYRV YGAVVQ+VFQDTGIFAAEEHPMHIHGYHF+VLATGFGNYDP
Sbjct: 201 RALWQPVKGTKLYRVEYGAVVQMVFQDTGIFAAEEHPMHIHGYHFFVLATGFGNYDP 371
Score = 257 bits (556), Expect = 4e-068
Identities = 100/116 (86%), Positives = 102/116 (87%)
Frame = +3 / -2
Query: 3 GS*LPNPVAST*KW*PWMCMGCSSAAKMPVSWNTICTTAPYLTRYRRVPLTGCHSARGTF 182
GS*LPNPVAST KW*PWMCMGCSSAAKMPVSWNTICTTAPY TRY VP TGCHSARGTF
Sbjct: 370 GS*LPNPVASTKKW*PWMCMGCSSAAKMPVSWNTICTTAPYSTRYSLVPFTGCHSARGTF 191
Query: 183 CEVKSKNTGGSAGKSSVNTPGMWW*CACSRETVSGSWNDTXXMLAPXXXXXXPWQN 350
CEVKSKNTGG+AGKSSVNTPGMWW*CACSR+TV GSWNDT MLAP PWQN
Sbjct: 190 CEVKSKNTGGNAGKSSVNTPGMWW*CACSRDTVLGSWNDTLFMLAPNRVLLGPWQN 23
Score = 157 bits (337), Expect(2) = 9e-048
Identities = 64/72 (88%), Positives = 66/72 (91%)
Frame = -3 / +2
Query: 218 GAPARVLRLHLAERPARAVAARQGHPPVPRQVRRRGADRVPGHGHLRRRGAPHAHPRLPL 39
G PA VLRLHLAERPARAVAAR+GH VPR+VRR GAD VPGHGHLRRRGAPHAHPRLPL
Sbjct: 155 GVPAGVLRLHLAERPARAVAAREGHQAVPRRVRRGGADGVPGHGHLRRRGAPHAHPRLPL 334
Query: 38 LRAGHGVRQLRP 3
LRAGHGVRQLRP
Sbjct: 335 LRAGHGVRQLRP 370
Score = 68.9 bits (144), Expect(3) = 1e-029
Identities = 30/35 (85%), Positives = 30/35 (85%)
Frame = +2 / -1
Query: 80 EDARVLEHDLHHGAVPDAVQAGALDGLPQRARDVL 184
EDARVLEH LHH AV DAVQ GAL GLPQRARDVL
Sbjct: 293 EDARVLEHHLHHRAVLDAVQLGALHGLPQRARDVL 189
Score = 52.4 bits (108), Expect(3) = 1e-029
Identities = 23/31 (74%), Positives = 23/31 (74%)
Frame = +2 / -1
Query: 260 RLQQGDGVGELERHXXHARAXXGXXXALAER 352
RLQQG GVGELERH HARA G ALAER
Sbjct: 113 RLQQGHGVGELERHVVHARAEPGVVGALAER 21
Score = 52.4 bits (108), Expect(2) = 9e-048
Identities = 21/31 (67%), Positives = 23/31 (74%)
Frame = -3 / +2
Query: 350 VLPGPXXXXXXREHXXRVVPAPRHRLPAAGA 258
VLPGP REH RVVPAP+HR+PAAGA
Sbjct: 23 VLPGPQQHPVRREHEQRVVPAPQHRVPAAGA 115
Score = 44.6 bits (91), Expect(3) = 1e-029
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +1 / -3
Query: 1 AGRSCRTPWPARRSGS 48
AGRSCRTPWPARRSGS
Sbjct: 372 AGRSCRTPWPARRSGS 325
>gb|CW317729.1|CW317729 104_809_11473568_148_35866_022 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11473568, DNA
sequence
Length = 649
Score = 262 bits (566), Expect = 2e-069
Identities = 102/117 (87%), Positives = 107/117 (91%)
Frame = -1 / -3
Query: 352 PFCQGXXXXXXGASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVP 173
PFCQG GASM VSFQLP+TVSLLQAHYHHIPGVFT+DFPA PPVFFDFTSQNVP
Sbjct: 377 PFCQGPNNTRFGASMNNVSFQLPNTVSLLQAHYHHIPGVFTEDFPAFPPVFFDFTSQNVP 198
Query: 172 RALWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYDP 2
RALWQPVKGT+LYRV YGAVVQ+VFQDTGIFAAEEHPMHIHGYHF+VLATGFGNYDP
Sbjct: 197 RALWQPVKGTKLYRVEYGAVVQMVFQDTGIFAAEEHPMHIHGYHFFVLATGFGNYDP 27
Score = 257 bits (556), Expect = 4e-068
Identities = 100/116 (86%), Positives = 102/116 (87%)
Frame = +3 / +1
Query: 3 GS*LPNPVAST*KW*PWMCMGCSSAAKMPVSWNTICTTAPYLTRYRRVPLTGCHSARGTF 182
GS*LPNPVAST KW*PWMCMGCSSAAKMPVSWNTICTTAPY TRY VP TGCHSARGTF
Sbjct: 28 GS*LPNPVASTKKW*PWMCMGCSSAAKMPVSWNTICTTAPYSTRYSLVPFTGCHSARGTF 207
Query: 183 CEVKSKNTGGSAGKSSVNTPGMWW*CACSRETVSGSWNDTXXMLAPXXXXXXPWQN 350
CEVKSKNTGG+AGKSSVNTPGMWW*CACSR+TV GSWNDT MLAP PWQN
Sbjct: 208 CEVKSKNTGGNAGKSSVNTPGMWW*CACSRDTVLGSWNDTLFMLAPNRVLLGPWQN 375
Score = 157 bits (337), Expect(2) = 1e-047
Identities = 64/72 (88%), Positives = 66/72 (91%)
Frame = -3 / -2
Query: 218 GAPARVLRLHLAERPARAVAARQGHPPVPRQVRRRGADRVPGHGHLRRRGAPHAHPRLPL 39
G PA VLRLHLAERPARAVAAR+GH VPR+VRR GAD VPGHGHLRRRGAPHAHPRLPL
Sbjct: 243 GVPAGVLRLHLAERPARAVAAREGHQAVPRRVRRGGADGVPGHGHLRRRGAPHAHPRLPL 64
Query: 38 LRAGHGVRQLRP 3
LRAGHGVRQLRP
Sbjct: 63 LRAGHGVRQLRP 28
Score = 68.9 bits (144), Expect(3) = 1e-029
Identities = 30/35 (85%), Positives = 30/35 (85%)
Frame = +2 / +3
Query: 80 EDARVLEHDLHHGAVPDAVQAGALDGLPQRARDVL 184
EDARVLEH LHH AV DAVQ GAL GLPQRARDVL
Sbjct: 105 EDARVLEHHLHHRAVLDAVQLGALHGLPQRARDVL 209
Score = 52.4 bits (108), Expect(3) = 1e-029
Identities = 23/31 (74%), Positives = 23/31 (74%)
Frame = +2 / +3
Query: 260 RLQQGDGVGELERHXXHARAXXGXXXALAER 352
RLQQG GVGELERH HARA G ALAER
Sbjct: 285 RLQQGHGVGELERHVVHARAEPGVVGALAER 377
Score = 52.4 bits (108), Expect(2) = 1e-047
Identities = 21/31 (67%), Positives = 23/31 (74%)
Frame = -3 / -2
Query: 350 VLPGPXXXXXXREHXXRVVPAPRHRLPAAGA 258
VLPGP REH RVVPAP+HR+PAAGA
Sbjct: 375 VLPGPQQHPVRREHEQRVVPAPQHRVPAAGA 283
Score = 44.6 bits (91), Expect(3) = 1e-029
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +1 / +2
Query: 1 AGRSCRTPWPARRSGS 48
AGRSCRTPWPARRSGS
Sbjct: 26 AGRSCRTPWPARRSGS 73
>gb|CW090817.1|CW090817 104_436_10949489_114_32604_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10949489, DNA
sequence
Length = 739
Score = 235 bits (508), Expect = 2e-061
Identities = 90/97 (92%), Positives = 95/97 (97%)
Frame = -1 / +1
Query: 292 QLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRALWQPVKGTRLYRVRYGAV 113
QLP+TVSLLQAHYHHIPGVFT+DFPA PPVFFDFTSQNVPRALWQPVKGT+LYRV YGAV
Sbjct: 1 QLPNTVSLLQAHYHHIPGVFTEDFPAFPPVFFDFTSQNVPRALWQPVKGTKLYRVEYGAV 180
Query: 112 VQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYDP 2
VQ+VFQDTGIFAAEEHPMHIHGYHF+VLATGFGNYDP
Sbjct: 181 VQMVFQDTGIFAAEEHPMHIHGYHFFVLATGFGNYDP 291
Score = 226 bits (487), Expect = 1e-058
Identities = 88/96 (91%), Positives = 90/96 (93%)
Frame = +3 / -3
Query: 3 GS*LPNPVAST*KW*PWMCMGCSSAAKMPVSWNTICTTAPYLTRYRRVPLTGCHSARGTF 182
GS*LPNPVAST KW*PWMCMGCSSAAKMPVSWNTICTTAPY TRY VP TGCHSARGTF
Sbjct: 290 GS*LPNPVASTKKW*PWMCMGCSSAAKMPVSWNTICTTAPYSTRYSLVPFTGCHSARGTF 111
Query: 183 CEVKSKNTGGSAGKSSVNTPGMWW*CACSRETVSGS 290
CEVKSKNTGG+AGKSSVNTPGMWW*CACSR+TV GS
Sbjct: 110 CEVKSKNTGGNAGKSSVNTPGMWW*CACSRDTVLGS 3
Score = 157 bits (337), Expect(2) = 9e-040
Identities = 64/72 (88%), Positives = 66/72 (91%)
Frame = -3 / +3
Query: 218 GAPARVLRLHLAERPARAVAARQGHPPVPRQVRRRGADRVPGHGHLRRRGAPHAHPRLPL 39
G PA VLRLHLAERPARAVAAR+GH VPR+VRR GAD VPGHGHLRRRGAPHAHPRLPL
Sbjct: 75 GVPAGVLRLHLAERPARAVAAREGHQAVPRRVRRGGADGVPGHGHLRRRGAPHAHPRLPL 254
Query: 38 LRAGHGVRQLRP 3
LRAGHGVRQLRP
Sbjct: 255 LRAGHGVRQLRP 290
Score = 68.9 bits (144), Expect(3) = 3e-021
Identities = 30/35 (85%), Positives = 30/35 (85%)
Frame = +2 / -2
Query: 80 EDARVLEHDLHHGAVPDAVQAGALDGLPQRARDVL 184
EDARVLEH LHH AV DAVQ GAL GLPQRARDVL
Sbjct: 213 EDARVLEHHLHHRAVLDAVQLGALHGLPQRARDVL 109
Score = 44.6 bits (91), Expect(3) = 3e-021
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +1 / -1
Query: 1 AGRSCRTPWPARRSGS 48
AGRSCRTPWPARRSGS
Sbjct: 292 AGRSCRTPWPARRSGS 245
Score = 26.3 bits (51), Expect(2) = 9e-040
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -3 / +3
Query: 290 APRHRLPAAGA 258
AP+HR+PAAGA
Sbjct: 3 APQHRVPAAGA 35
Score = 25.4 bits (49), Expect(3) = 3e-021
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +2 / -2
Query: 260 RLQQGDGVGEL 292
RLQQG GVGEL
Sbjct: 33 RLQQGHGVGEL 1
>gb|CW246411.1|CW246411 104_707_11221331_148_35088_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221331, DNA
sequence
Length = 677
Score = 150 bits (323), Expect(2) = 6e-042
Identities = 55/79 (69%), Positives = 67/79 (84%)
Frame = -1 / +1
Query: 241 GVFTDDFPALPPVFFDFTSQNVPRALWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHP 62
GVFT DFPA PPV FD+T+QNV RALWQPV GT++YR++YGA VQ+V Q T +FAAE HP
Sbjct: 292 GVFTADFPANPPVTFDYTAQNVSRALWQPVPGTKVYRLKYGAAVQLVLQGTNVFAAENHP 471
Query: 61 MHIHGYHFYVLATGFGNYD 5
+H+HGY FY+LA GFGN+D
Sbjct: 472 IHLHGYDFYILAEGFGNFD 528
Score = 105 bits (223), Expect(2) = 3e-025
Identities = 49/77 (63%), Positives = 52/77 (67%)
Frame = +3 / -1
Query: 12 LPNPVAST*KW*PWMCMGCSSAAKMPVSWNTICTTAPYLTRYRRVPLTGCHSARGTFCEV 191
LPNP A *K *PW MG SAA V +T CT APYL+ Y VP TGCHSAR TFC V
Sbjct: 521 LPNPSARM*KS*PWRWMGWFSAANTLVPCSTSCTAAPYLSLYTLVPGTGCHSARLTFCAV 342
Query: 192 KSKNTGGSAGKSSVNTP 242
S TGG AGKS+VNTP
Sbjct: 341 *SNVTGGLAGKSAVNTP 291
Score = 39.6 bits (80), Expect(2) = 6e-042
Identities = 17/31 (54%), Positives = 18/31 (58%)
Frame = -1 / +1
Query: 346 CQGXXXXXXGASMXXVSFQLPDTVSLLQAHY 254
C G ASM VSF LP T S+LQAHY
Sbjct: 169 CGGPNNTRFAASMNNVSFVLPSTTSILQAHY 261
Score = 29.0 bits (57), Expect(2) = 3e-025
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +3 / -1
Query: 255 *CACSRETVSGSWNDTXXMLAPXXXXXXPWQ 347
*CAC E V GS +T MLA P Q
Sbjct: 260 *CACRMEVVDGSTKETLFMLAANRVLLGPPQ 168
>gb|CW246412.1|CW246412 104_707_11221331_148_37606_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221331, DNA
sequence
Length = 680
Score = 150 bits (323), Expect(2) = 6e-042
Identities = 55/79 (69%), Positives = 67/79 (84%)
Frame = -1 / +1
Query: 241 GVFTDDFPALPPVFFDFTSQNVPRALWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHP 62
GVFT DFPA PPV FD+T+QNV RALWQPV GT++YR++YGA VQ+V Q T +FAAE HP
Sbjct: 292 GVFTADFPANPPVTFDYTAQNVSRALWQPVPGTKVYRLKYGAAVQLVLQGTNVFAAENHP 471
Query: 61 MHIHGYHFYVLATGFGNYD 5
+H+HGY FY+LA GFGN+D
Sbjct: 472 IHLHGYDFYILAEGFGNFD 528
Score = 105 bits (223), Expect(2) = 3e-025
Identities = 49/77 (63%), Positives = 52/77 (67%)
Frame = +3 / -1
Query: 12 LPNPVAST*KW*PWMCMGCSSAAKMPVSWNTICTTAPYLTRYRRVPLTGCHSARGTFCEV 191
LPNP A *K *PW MG SAA V +T CT APYL+ Y VP TGCHSAR TFC V
Sbjct: 521 LPNPSARM*KS*PWRWMGWFSAANTLVPCSTSCTAAPYLSLYTLVPGTGCHSARLTFCAV 342
Query: 192 KSKNTGGSAGKSSVNTP 242
S TGG AGKS+VNTP
Sbjct: 341 *SNVTGGLAGKSAVNTP 291
Score = 39.6 bits (80), Expect(2) = 6e-042
Identities = 17/31 (54%), Positives = 18/31 (58%)
Frame = -1 / +1
Query: 346 CQGXXXXXXGASMXXVSFQLPDTVSLLQAHY 254
C G ASM VSF LP T S+LQAHY
Sbjct: 169 CGGPNNTRFAASMNNVSFVLPSTTSILQAHY 261
Score = 29.0 bits (57), Expect(2) = 3e-025
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +3 / -1
Query: 255 *CACSRETVSGSWNDTXXMLAPXXXXXXPWQ 347
*CAC E V GS +T MLA P Q
Sbjct: 260 *CACRMEVVDGSTKETLFMLAANRVLLGPPQ 168
>gb|CW148316.1|CW148316 104_542_11140356_116_35003_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11140356, DNA
sequence
Length = 726
Score = 146 bits (313), Expect(2) = 3e-040
Identities = 54/76 (71%), Positives = 65/76 (85%)
Frame = -1 / +2
Query: 241 GVFTDDFPALPPVFFDFTSQNVPRALWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHP 62
GVFT DFPA PPV FD+T+QNV RALWQPV GTR+YR++YGA VQ+V Q T +FAAE+HP
Sbjct: 476 GVFTADFPANPPVTFDYTAQNVSRALWQPVPGTRVYRLKYGAAVQLVLQGTNVFAAEDHP 655
Query: 61 MHIHGYHFYVLATGFG 14
+H+HGY FY+LA GFG
Sbjct: 656 IHLHGYDFYILAEGFG 703
Score = 112 bits (239), Expect = 2e-024
Identities = 50/77 (64%), Positives = 54/77 (70%)
Frame = +3 / -1
Query: 12 LPNPVAST*KW*PWMCMGCSSAAKMPVSWNTICTTAPYLTRYRRVPLTGCHSARGTFCEV 191
+PNP A *K *PW MG SSAA V W+T CT APYL+ Y VP TGCHSAR TFC V
Sbjct: 705 VPNPSARM*KS*PWRWMGWSSAANTLVPWSTSCTAAPYLSLYTLVPGTGCHSARLTFCAV 526
Query: 192 KSKNTGGSAGKSSVNTP 242
S TGG AGKS+VNTP
Sbjct: 525 *SNVTGGLAGKSAVNTP 475
Score = 39.1 bits (79), Expect(2) = 3e-040
Identities = 16/31 (51%), Positives = 18/31 (58%)
Frame = -1 / +2
Query: 346 CQGXXXXXXGASMXXVSFQLPDTVSLLQAHY 254
C G A+M VSF LP T S+LQAHY
Sbjct: 353 CSGPNNTRFAANMNNVSFVLPSTTSILQAHY 445
>gb|CW104104.1|CW104104 104_473_11012249_116_34444_079 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11012249, DNA
sequence
Length = 624
Score = 145 bits (311), Expect(2) = 3e-040
Identities = 54/76 (71%), Positives = 64/76 (84%)
Frame = -1 / -3
Query: 241 GVFTDDFPALPPVFFDFTSQNVPRALWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHP 62
GVFT DFPA PPV FD+T+QNV RALWQPV GTR+YR++YGA VQ+V Q T +FAAE HP
Sbjct: 304 GVFTADFPANPPVTFDYTAQNVSRALWQPVPGTRVYRLKYGAAVQLVLQGTNVFAAENHP 125
Query: 61 MHIHGYHFYVLATGFG 14
+H+HGY FY+LA GFG
Sbjct: 124 IHLHGYDFYILAEGFG 77
Score = 109 bits (233), Expect(2) = 1e-023
Identities = 49/77 (63%), Positives = 53/77 (68%)
Frame = +3 / +3
Query: 12 LPNPVAST*KW*PWMCMGCSSAAKMPVSWNTICTTAPYLTRYRRVPLTGCHSARGTFCEV 191
+PNP A *K *PW MG SAA V W+T CT APYL+ Y VP TGCHSAR TFC V
Sbjct: 75 VPNPSARM*KS*PWRWMGWFSAANTLVPWSTSCTAAPYLSLYTLVPGTGCHSARLTFCAV 254
Query: 192 KSKNTGGSAGKSSVNTP 242
S TGG AGKS+VNTP
Sbjct: 255 *SNVTGGLAGKSAVNTP 305
Score = 39.1 bits (79), Expect(2) = 3e-040
Identities = 16/31 (51%), Positives = 18/31 (58%)
Frame = -1 / -3
Query: 346 CQGXXXXXXGASMXXVSFQLPDTVSLLQAHY 254
C G A+M VSF LP T S+LQAHY
Sbjct: 427 CSGPNNTRFAANMNNVSFVLPSTTSILQAHY 335
Score = 18.9 bits (35), Expect(2) = 1e-023
Identities = 9/19 (47%), Positives = 9/19 (47%)
Frame = +2 / +2
Query: 260 RLQQGDGVGELERHXXHAR 316
RLQ G G E E H R
Sbjct: 341 RLQDGGGGREHEGDVVHVR 397
>gb|CW456969.1|CW456969 fsbb001f202j05k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f202j05, DNA
sequence
Length = 502
Score = 163 bits (351), Expect = 8e-040
Identities = 64/77 (83%), Positives = 67/77 (87%)
Frame = -1 / -1
Query: 352 PFCQGXXXXXXGASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVP 173
PFCQG GASM VSFQLP+TVSLLQAHYHHIPGVFT+DFPA PPVFFDFTSQNVP
Sbjct: 232 PFCQGPNNTRFGASMNNVSFQLPNTVSLLQAHYHHIPGVFTEDFPAFPPVFFDFTSQNVP 53
Query: 172 RALWQPVKGTRLYRVRY 122
RALWQPVKGT+LYRV Y
Sbjct: 52 RALWQPVKGTKLYRVEY 2
Score = 159 bits (342), Expect = 1e-038
Identities = 61/76 (80%), Positives = 63/76 (82%)
Frame = +3 / +3
Query: 123 YLTRYRRVPLTGCHSARGTFCEVKSKNTGGSAGKSSVNTPGMWW*CACSRETVSGSWNDT 302
Y TRY VP TGCHSARGTFCEVKSKNTGG+AGKSSVNTPGMWW*CACSR+TV GSWNDT
Sbjct: 3 YSTRYSLVPFTGCHSARGTFCEVKSKNTGGNAGKSSVNTPGMWW*CACSRDTVLGSWNDT 182
Query: 303 XXMLAPXXXXXXPWQN 350
MLAP PWQN
Sbjct: 183 LFMLAPNRVLLGPWQN 230
>gb|CW329817.1|CW329817 104_826_11480043_148_35996_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11480043, DNA
sequence
Length = 556
Score = 109 bits (232), Expect(2) = 1e-038
Identities = 39/60 (65%), Positives = 49/60 (81%)
Frame = -1 / -1
Query: 181 NVPRALWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYDP 2
NV +ALWQPV GT+LY +R+G+VVQ+V QDT I E HP+HIHGY F++LA GFGN+DP
Sbjct: 292 NVSQALWQPVPGTKLYPLRFGSVVQVVLQDTSIVTPENHPIHIHGYDFFILAEGFGNFDP 113
Score = 69.8 bits (146), Expect(2) = 1e-038
Identities = 28/43 (65%), Positives = 32/43 (74%)
Frame = -1 / -1
Query: 316 ASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFT 188
ASM VSF P + SLL AHY+ +PGVFT DFPA PPV FD+T
Sbjct: 424 ASMNNVSFVFPKSDSLLHAHYYKVPGVFTTDFPAYPPVQFDYT 296
>gb|CW246410.1|CW246410 104_707_11221331_116_35084_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221331, DNA
sequence
Length = 688
Score = 150 bits (323), Expect(2) = 1e-037
Identities = 55/79 (69%), Positives = 67/79 (84%)
Frame = -1 / -1
Query: 241 GVFTDDFPALPPVFFDFTSQNVPRALWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHP 62
GVFT DFPA PPV FD+T+QNV RALWQPV GT++YR++YGA VQ+V Q T +FAAE HP
Sbjct: 622 GVFTADFPANPPVTFDYTAQNVSRALWQPVPGTKVYRLKYGAAVQLVLQGTNVFAAENHP 443
Query: 61 MHIHGYHFYVLATGFGNYD 5
+H+HGY FY+LA GFGN+D
Sbjct: 442 IHLHGYDFYILAEGFGNFD 386
Score = 105 bits (223), Expect = 4e-022
Identities = 49/77 (63%), Positives = 52/77 (67%)
Frame = +3 / +3
Query: 12 LPNPVAST*KW*PWMCMGCSSAAKMPVSWNTICTTAPYLTRYRRVPLTGCHSARGTFCEV 191
LPNP A *K *PW MG SAA V +T CT APYL+ Y VP TGCHSAR TFC V
Sbjct: 393 LPNPSARM*KS*PWRWMGWFSAANTLVPCSTSCTAAPYLSLYTLVPGTGCHSARLTFCAV 572
Query: 192 KSKNTGGSAGKSSVNTP 242
S TGG AGKS+VNTP
Sbjct: 573 *SNVTGGLAGKSAVNTP 623
Score = 25.8 bits (50), Expect(2) = 1e-037
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -1 / -1
Query: 289 LPDTVSLLQAHY 254
LP T S+LQAHY
Sbjct: 688 LPSTTSILQAHY 653
>gb|CW222901.1|CW222901 104_658_11202621_116_37181_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11202621, DNA
sequence
Length = 660
Score = 109 bits (232), Expect(2) = 2e-037
Identities = 39/60 (65%), Positives = 49/60 (81%)
Frame = -1 / +1
Query: 181 NVPRALWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYDP 2
NV +ALWQPV GT+LY +R+G+VVQ+V QDT I E HP+HIHGY F++LA GFGN+DP
Sbjct: 127 NVSQALWQPVPGTKLYPLRFGSVVQVVLQDTSIVTPENHPIHIHGYDFFILAEGFGNFDP 306
Score = 66.1 bits (138), Expect(2) = 2e-037
Identities = 26/41 (63%), Positives = 30/41 (73%)
Frame = -1 / +1
Query: 310 MXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFT 188
M VSF P + SLL AHY+ +PGVFT DFPA PPV FD+T
Sbjct: 1 MNNVSFVFPKSDSLLHAHYYKVPGVFTTDFPAYPPVQFDYT 123
>gb|CW229880.1|CW229880 104_671_11207551_148_37265_026 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11207551, DNA
sequence
Length = 661
Score = 150 bits (323), Expect = 6e-036
Identities = 55/79 (69%), Positives = 67/79 (84%)
Frame = -1 / -3
Query: 241 GVFTDDFPALPPVFFDFTSQNVPRALWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHP 62
GVFT DFPA PPV FD+T+QNV RALWQPV GT++YR++YGA VQ+V Q T +FAAE HP
Sbjct: 620 GVFTADFPANPPVTFDYTAQNVSRALWQPVPGTKVYRLKYGAAVQLVLQGTNVFAAENHP 441
Query: 61 MHIHGYHFYVLATGFGNYD 5
+H+HGY FY+LA GFGN+D
Sbjct: 440 IHLHGYDFYILAEGFGNFD 384
Score = 105 bits (223), Expect = 4e-022
Identities = 49/77 (63%), Positives = 52/77 (67%)
Frame = +3 / +1
Query: 12 LPNPVAST*KW*PWMCMGCSSAAKMPVSWNTICTTAPYLTRYRRVPLTGCHSARGTFCEV 191
LPNP A *K *PW MG SAA V +T CT APYL+ Y VP TGCHSAR TFC V
Sbjct: 391 LPNPSARM*KS*PWRWMGWFSAANTLVPCSTSCTAAPYLSLYTLVPGTGCHSARLTFCAV 570
Query: 192 KSKNTGGSAGKSSVNTP 242
S TGG AGKS+VNTP
Sbjct: 571 *SNVTGGLAGKSAVNTP 621
>gb|CW321938.1|CW321938 104_815_11475822_116_35944_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11475822, DNA
sequence
Length = 577
Score = 109 bits (232), Expect(2) = 2e-035
Identities = 39/60 (65%), Positives = 49/60 (81%)
Frame = -1 / -2
Query: 181 NVPRALWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYDP 2
NV +ALWQPV GT+LY +R+G+VVQ+V QDT I E HP+HIHGY F++LA GFGN+DP
Sbjct: 471 NVSQALWQPVPGTKLYPLRFGSVVQVVLQDTSIVTPENHPIHIHGYDFFILAEGFGNFDP 292
Score = 59.3 bits (123), Expect(2) = 2e-035
Identities = 22/33 (66%), Positives = 26/33 (78%)
Frame = -1 / -2
Query: 286 PDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFT 188
P + SLL AHY+ +PGVFT DFPA PPV FD+T
Sbjct: 573 PKSDSLLHAHYYKVPGVFTTDFPAYPPVQFDYT 475
>gb|CX615412.1|CX615412 GABR1_20_B03.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_20_B03_A002 3', mRNA sequence
Length = 684
Score = 136 bits (292), Expect = 1e-031
Identities = 49/72 (68%), Positives = 61/72 (84%)
Frame = -1 / +1
Query: 220 PALPPVFFDFTSQNVPRALWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYH 41
PA PPV FD+T+QNV RALWQPV GT++YR++YGA VQ+V Q T +FAAE HP+H+HGY
Sbjct: 1 PANPPVTFDYTAQNVSRALWQPVPGTKVYRLKYGAAVQLVLQGTNVFAAENHPIHLHGYD 180
Query: 40 FYVLATGFGNYD 5
FY+LA GFGN+D
Sbjct: 181 FYILAEGFGNFD 216
>gb|CW268542.1|CW268542 104_739_11401361_148_35310_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11401361, DNA
sequence
Length = 748
Score = 123 bits (264), Expect = 8e-028
Identities = 47/53 (88%), Positives = 50/53 (94%)
Frame = -1 / -3
Query: 160 QPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYDP 2
QPVKGT+LYRV YGA VQ+ FQDTGIFAAEEHPMHIHGYHF+VLATGFGNYDP
Sbjct: 746 QPVKGTKLYRVEYGAWVQMCFQDTGIFAAEEHPMHIHGYHFFVLATGFGNYDP 588
Score = 116 bits (248), Expect = 1e-025
Identities = 46/53 (86%), Positives = 48/53 (90%)
Frame = -3 / -2
Query: 161 AARQGHPPVPRQVRRRGADRVPGHGHLRRRGAPHAHPRLPLLRAGHGVRQLRP 3
AAR+GH VPR+VRR GAD PGHGHLRRRGAPHAHPRLPLLRAGHGVRQLRP
Sbjct: 747 AAREGHQAVPRRVRRVGADVFPGHGHLRRRGAPHAHPRLPLLRAGHGVRQLRP 589
Score = 114 bits (244), Expect = 5e-025
Identities = 45/53 (84%), Positives = 45/53 (84%)
Frame = +3 / +1
Query: 3 GS*LPNPVAST*KW*PWMCMGCSSAAKMPVSWNTICTTAPYLTRYRRVPLTGC 161
GS*LPNPVAST KW*PWMCMGCSSAAKMPVSW ICT APY TRY VP TGC
Sbjct: 589 GS*LPNPVASTKKW*PWMCMGCSSAAKMPVSWKHICTHAPYSTRYSLVPFTGC 747
>gb|CF071060.1|CF071060 FE1_15_G11.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_15_G11_A002 3', mRNA sequence
Length = 665
Score = 104 bits (222), Expect(2) = 1e-025
Identities = 38/60 (63%), Positives = 48/60 (80%)
Frame = -1 / +3
Query: 181 NVPRALWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYDP 2
NV +ALWQPV GT+LY +R+G+VVQ+V QDT I E HP+ IHGY F++LA GFGN+DP
Sbjct: 51 NVSQALWQPVPGTKLYPLRFGSVVQVVLQDTSIVTPENHPIPIHGYDFFILAEGFGNFDP 230
Score = 30.9 bits (61), Expect(2) = 1e-025
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -1 / +3
Query: 232 TDDFPALPPVFFDFT 188
T DFPA PPV FD+T
Sbjct: 3 TTDFPAYPPVQFDYT 47
>gb|CX615427.1|CX615427 GABR1_20_C07.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_20_C07_A002 3', mRNA sequence
Length = 645
Score = 112 bits (240), Expect = 2e-024
Identities = 40/59 (67%), Positives = 49/59 (83%)
Frame = -1 / +1
Query: 181 NVPRALWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYD 5
NV RALWQPV GT+ YR++YGA VQ+V Q T +FAAE HP+H+HGY FY+LA GFGN+D
Sbjct: 1 NVSRALWQPVPGTKAYRLKYGAAVQLVLQGTNVFAAENHPIHLHGYDFYILAEGFGNFD 177
>gb|CW184226.1|CW184226 104_600_11165041_116_36681_007 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11165041, DNA
sequence
Length = 601
Score = 67.5 bits (141), Expect(3) = 2e-021
Identities = 25/56 (44%), Positives = 39/56 (69%)
Frame = -1 / +2
Query: 172 RALWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYD 5
R+L KGT++ +R V++V Q+T I AE HP+H+HG++F+VLA G GN++
Sbjct: 233 RSLMFTSKGTKVKTLR*NETVEVVLQNTAILGAENHPVHLHGFNFFVLAQGTGNFN 400
Score = 37.3 bits (75), Expect(3) = 2e-021
Identities = 14/18 (77%), Positives = 14/18 (77%)
Frame = -1 / +2
Query: 241 GVFTDDFPALPPVFFDFT 188
GVFT DFP PPV FDFT
Sbjct: 158 GVFTRDFPDRPPVMFDFT 211
Score = 33.1 bits (66), Expect(3) = 2e-021
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -1 / +2
Query: 316 ASMXXVSFQLPDTVSLLQAHYHHIP 242
ASM VSFQ P +SLL+AH P
Sbjct: 80 ASMNNVSFQFPTAMSLLEAHMRGAP 154
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 324,263,730
Number of Sequences: 832831
Number of extensions: 5028660
Number of successful extensions: 516883
Number of sequences better than 1.0e-020: 18
length of database: 163,786,556
effective HSP length: 51
effective length of database: 121,312,175
effective search space used: 7885291375
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)