TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAD12g05.sg.3.2
(900 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN130320.1|CN130320 RHOH1_40_E07.g1_A002 Acid- and alkal... 486 e-136
gb|CN130246.1|CN130246 RHOH1_40_E07.b1_A002 Acid- and alkal... 409 e-113
gb|BF317717.1|BF317717 OV1_12_E04.g1_A002 Ovary 1 (OV1) Sor... 313 1e-084
gb|BE363877.1|BE363877 PI1_10_D05.b1_A002 Pathogen induced ... 284 2e-075
gb|BF420890.1|BF420890 OV1_12_E04.b1_A002 Ovary 1 (OV1) Sor... 246 3e-064
gb|CW463673.1|CW463673 fsbb001f212h05k0 Sorghum methylation... 175 2e-053
gb|CW478862.1|CW478862 fsbb001f236p10f0 Sorghum methylation... 175 2e-053
gb|CW184700.1|CW184700 104_602_11165672_148_36691_030 Sorgh... 134 6e-053
gb|CW174081.1|CW174081 104_586_11157200_148_36564_032 Sorgh... 205 8e-052
gb|CW422004.1|CW422004 fsbb001f131b07f0 Sorghum methylation... 198 1e-049
gb|BE363946.1|BE363946 PI1_10_D05.g1_A002 Pathogen induced ... 190 3e-047
gb|CW112406.1|CW112406 104_486_11104870_116_34546_091 Sorgh... 188 1e-046
gb|CW467334.1|CW467334 fsbb001f218p20f0 Sorghum methylation... 174 2e-044
gb|CF772769.1|CF772769 DSBF1_39_B11.g1_A010 Drought-stresse... 153 1e-039
gb|CW184699.1|CW184699 104_602_11165672_116_36692_030 Sorgh... 75 2e-033
gb|CW478863.1|CW478863 fsbb001f236p10k0 Sorghum methylation... 90 1e-032
gb|CW488801.1|CW488801 fsbb001f265g08f0 Sorghum methylation... 88 3e-032
gb|CW237987.1|CW237987 104_694_11216476_148_37490_006 Sorgh... 79 5e-026
gb|CW237986.1|CW237986 104_694_11216476_116_37489_006 Sorgh... 86 1e-025
gb|CW463672.1|CW463672 fsbb001f212h05f0 Sorghum methylation... 73 2e-025
gb|CW086749.1|CW086749 104_430_10947182_114_33015_049 Sorgh... 105 7e-022
gb|CW401162.1|CW401162 fsbb001f091n08f0 Sorghum methylation... 105 7e-022
>gb|CN130320.1|CN130320 RHOH1_40_E07.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_40_E07_A002 5', mRNA sequence
Length = 661
Score = 486 bits (1055), Expect = e-136
Identities = 196/218 (89%), Positives = 199/218 (91%)
Frame = +1 / +3
Query: 58 QIGXXXXXXXXXXXXTSMGHPYAPAELDLPGFVPLKLSQVEILVSYLGASVFVFLAVWLV 237
+IG SMGHPYAPAELDLPGFVPLKLSQ EILVSYLGAS+FV LAVWLV
Sbjct: 3 RIGG*RKAEQATAAAASMGHPYAPAELDLPGFVPLKLSQAEILVSYLGASLFVLLAVWLV 182
Query: 238 SGRCVRLSKTDRLLMCWWAFTGLTHIMIEGPFVFTPDFFKKENPNFFDEVWKEYSKGDSR 417
SGRC RLSKTDRLLMCWWAFTGLTHIMIEGPFVFTPDFFKKENPNFFDEVWKEYSKGDSR
Sbjct: 183 SGRCGRLSKTDRLLMCWWAFTGLTHIMIEGPFVFTPDFFKKENPNFFDEVWKEYSKGDSR 362
Query: 418 YVARDTATVTVEGITAVLEGPASLLAVYAIASRKSFSHILQFAVCLGQLYGCLVYFITAY 597
YVARD ATVTVEGITAVLEGPASLLAVYAI SRK FSHILQFAVCLGQLYGCLVYFITAY
Sbjct: 363 YVARDAATVTVEGITAVLEGPASLLAVYAIGSRKPFSHILQFAVCLGQLYGCLVYFITAY 542
Query: 598 LDGFNFWVGPFYFWAYFIGANSFWIWIPMLIAIRSWKK 711
LDGFNFWVGPFYFWAYFIGANSFWIWIPMLIAIRSWK+
Sbjct: 543 LDGFNFWVGPFYFWAYFIGANSFWIWIPMLIAIRSWKE 656
Score = 405 bits (879), Expect = e-112
Identities = 178/218 (81%), Positives = 183/218 (83%)
Frame = -2 / -1
Query: 713 VFFQDLMAMSIGIQIQKLFAPMKYAQK*NGPTQKLKPSKYAVMK*TRHP*SWPRQTANWR 534
+ FQDLMAMSIGIQIQKLFAPMKYAQK*NGPTQKLKPSKYAV+K*T+HP*S PRQTANWR
Sbjct: 658 ISFQDLMAMSIGIQIQKLFAPMKYAQK*NGPTQKLKPSKYAVIK*TKHP*S*PRQTANWR 479
Query: 533 MWLKDFLDAIA*TASSDAGPSNTAVIPSTVTVAVSLATYLESPLLYSFQTXXXXXXXXXX 354
+WLK F D IA*TASSDAGPSNTAVIPSTVTVA SLATYLESPLLYSFQT
Sbjct: 478 IWLKGFRDPIA*TASSDAGPSNTAVIPSTVTVAASLATYLESPLLYSFQTSSKKLGFSFL 299
Query: 353 XXXGVKTKGPSIIMWVNPVNAHQHMSRRSVLDNLTHLPETSQTARKTKTEAPR*DTRIST 174
GVKTKGPSIIMWVNPVNAHQHMSRRSVLDNL HLPETSQTAR+TK EAPR*DTRIS
Sbjct: 298 KKSGVKTKGPSIIMWVNPVNAHQHMSRRSVLDNLPHLPETSQTARRTKREAPR*DTRISA 119
Query: 173 WDSFSGTKPGRSSSAGA*GCPIDVXXXXXXXXXXXAPI 60
WDSFSGTKPGRSSSAGA*GCPID PI
Sbjct: 118 WDSFSGTKPGRSSSAGA*GCPIDAAAAVACSALRQPPI 5
Score = 316 bits (684), Expect(2) = e-104
Identities = 129/157 (82%), Positives = 140/157 (89%)
Frame = -1 / -3
Query: 711 FLPGPYGDEHRYPDPEAVCANEIRPEVERADPEVEAVQVRGDEVNQASVELAQTDGELEN 532
FLPG YG+EHRYP+PE +C NEI PEVE DPEVEA+QV GD+VNQASVEL TDG+LEN
Sbjct: 656 FLPGSYGNEHRYPNPETICTNEICPEVEWTDPEVEAIQVCGDKVNQASVELT*TDGKLEN 477
Query: 531 VAEGLPGCNSVDSK**CRAFQYSGDPFDRNSCSVPSNIPRVSLTILFPNFIKEIGVLLLE 352
+AEGLPG NS+DSK *CRAFQYS DPF+ NSC VPSNIPRV LTILFPNFI+EIGVLLLE
Sbjct: 476 MAEGLPGSNSIDSKQ*CRAFQYSSDPFNSNSCGVPSNIPRVPLTILFPNFIEEIGVLLLE 297
Query: 351 EIRSEDKGPLDHYVGQPCKCPPAHEQTVGLG*SDTSS 241
EIRSEDKGPLDHYVGQPC+CPPAHEQTVGLG S TSS
Sbjct: 296 EIRSEDKGPLDHYVGQPCECPPAHEQTVGLGQSATSS 186
Score = 208 bits (449), Expect(3) = 4e-075
Identities = 91/110 (82%), Positives = 94/110 (85%)
Frame = +3 / +2
Query: 243 KMCQIIQDRPSAHVLVGIYRVDPHNDRGALCLHS*FLQEGEPQFL**SLERV**GRL*VC 422
KM QI+QDRPSAHVLVGI+RVDPHNDRGALCLHS*FLQEGEPQFL *SLERV**G L*VC
Sbjct: 188 KMWQIVQDRPSAHVLVGIHRVDPHNDRGALCLHS*FLQEGEPQFLR*SLERV**GGL*VC 367
Query: 423 C*GHCNCYGRRDHRCIGRPCITTCCLRYCIQEVLQPHSPVRRLSGPALRM 572
C*G NCY RDH CIGRPCIT CCL Y I E LQP+SPV RLS ALRM
Sbjct: 368 C*GRRNCYC*RDHCCIGRPCITACCLCYWIPEALQPYSPVCRLSRSALRM 517
Score = 186 bits (401), Expect(3) = 4e-066
Identities = 89/115 (77%), Positives = 94/115 (81%)
Frame = -3 / -2
Query: 586 *SKPGIRRAGPDRRRTGECG*RTSWXXXXXXXXXXQGLPIQR*SLRP*QLQCP*QHT*SL 407
*SKP IRRA DRR+TGE G*R S QGLPIQ+*SL+ *QL+ P*QHT*S
Sbjct: 531 *SKPSIRRADLDRRQTGEYG*RASGIQ*HRQQAVMQGLPIQQ*SLQQ*QLRRP*QHT*SP 352
Query: 406 PYYTLSKLHQRNWGSPS*RNQE*RQRAPRSLCGSTL*MPTST*ADGRSWII*HIF 242
PYYTLSKLH+RNWGSPS*RNQE*RQRAPRSLCGSTL*MPTST*ADGRSW I HIF
Sbjct: 351 PYYTLSKLHRRNWGSPS*RNQE*RQRAPRSLCGSTL*MPTST*ADGRSWTICHIF 187
Score = 100 bits (213), Expect(4) = 5e-034
Identities = 44/87 (50%), Positives = 44/87 (50%)
Frame = +2 / +1
Query: 452 KGSPLYWKALHHYLLSTLLHPGXXXXXXXXXXXXXXXXXDAWFTSSPRTWXXXXXXXXXX 631
KGS LYWKALHH LLS LL PG DAWFT SP TW
Sbjct: 397 KGSLLYWKALHHCLLSMLLDPGSPSAIFSSLPSV*VSSTDAWFTLSPHTWMASTSGSVHS 576
Query: 632 XXXXISLAQTASGSGYRCSSP*GPGRK 712
ISL Q SG GYRCS P* PGRK
Sbjct: 577 TSGHISLVQIVSGFGYRCSLP*DPGRK 657
Score = 85.8 bits (181), Expect(2) = e-104
Identities = 35/43 (81%), Positives = 37/43 (86%)
Frame = -1 / -3
Query: 189 HEDLDLGQLQRHETRKVQLGWRVRVPH*RRCGHRLLGLASGAD 61
HEDL LGQLQRHE R++Q G RVRVPH*RRCG RLLGLAS AD
Sbjct: 134 HEDLGLGQLQRHEARQIQFGRRVRVPH*RRCGRRLLGLASAAD 6
Score = 69.8 bits (146), Expect(3) = 4e-066
Identities = 29/36 (80%), Positives = 30/36 (83%)
Frame = -3 / -2
Query: 169 TASAARNPEGPARLARKGAPLTSLRPSPARPCVGRR 62
TASAAR+P P R ARKGAPLT LRPSPARPCV RR
Sbjct: 114 TASAARSPADPVRPARKGAPLTPLRPSPARPCVSRR 7
Score = 68.0 bits (142), Expect(3) = 4e-075
Identities = 29/37 (78%), Positives = 31/37 (83%)
Frame = +3 / +2
Query: 60 DRRPTQGRAGDGRSDVNGAPLRASRAGPSGFRAAEAV 170
+RR TQGRAGDGRS VNGAPLRA R G +G RAAEAV
Sbjct: 5 NRRLTQGRAGDGRSGVNGAPLRAGRTGSAGLRAAEAV 115
Score = 53.8 bits (111), Expect(4) = 5e-034
Identities = 20/23 (86%), Positives = 21/23 (91%)
Frame = +2 / +1
Query: 242 EDVSDYPRPTVCSCAGGHLQG*P 310
EDV+D PRPTVCSCAGGH QG*P
Sbjct: 187 EDVADCPRPTVCSCAGGHSQG*P 255
Score = 46.0 bits (94), Expect(3) = 4e-075
Identities = 17/24 (70%), Positives = 19/24 (79%)
Frame = +3 / +2
Query: 645 FHWRKQLLDLDTDAHRHKVLEENL 716
FHW K LDLDTDAH HK+LE N+
Sbjct: 590 FHWCK*FLDLDTDAHCHKILEGNM 661
Score = 35.9 bits (72), Expect(3) = 4e-066
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = -3 / -2
Query: 712 FSSRTLWR*ASVSRSRSCLRQ*N 644
F SR LW+*ASVS+SR+ L Q*N
Sbjct: 657 FPSRILWQ*ASVSKSRNYLHQ*N 589
Score = 24.4 bits (47), Expect(4) = 5e-034
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +2 / +1
Query: 113 GTLTRQPSWTFR 148
GTLTR+P+W R
Sbjct: 58 GTLTRRPNWICR 93
Score = 23.1 bits (44), Expect(4) = 5e-034
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +2 / +1
Query: 380 MKFGKSIVR 406
MKFGKSIVR
Sbjct: 325 MKFGKSIVR 351
>gb|CN130246.1|CN130246 RHOH1_40_E07.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_40_E07_A002 3', mRNA sequence
Length = 669
Score = 409 bits (888), Expect(2) = e-113
Identities = 162/168 (96%), Positives = 163/168 (97%)
Frame = +1 / +3
Query: 241 GRCVRLSKTDRLLMCWWAFTGLTHIMIEGPFVFTPDFFKKENPNFFDEVWKEYSKGDSRY 420
GRC RLSKTDRLLMCWWAFTGLTHIMIEGPFVFTPDFFKKENPNFFDEVWKEYSKGDSRY
Sbjct: 3 GRCGRLSKTDRLLMCWWAFTGLTHIMIEGPFVFTPDFFKKENPNFFDEVWKEYSKGDSRY 182
Query: 421 VARDTATVTVEGITAVLEGPASLLAVYAIASRKSFSHILQFAVCLGQLYGCLVYFITAYL 600
VARD ATVTVEGITAVLEGPASLLAVYAI SRK FSHILQFAVCLGQLYGCLVYFITAYL
Sbjct: 183 VARDAATVTVEGITAVLEGPASLLAVYAIGSRKPFSHILQFAVCLGQLYGCLVYFITAYL 362
Query: 601 DGFNFWVGPFYFWAYFIGANSFWIWIPMLIAIRSWKKTCAAFQAEKVK 744
DGFNFWVGPFYFWAYFIGANSFWIWIPMLIAIRSWK+ CAAFQAEKVK
Sbjct: 363 DGFNFWVGPFYFWAYFIGANSFWIWIPMLIAIRSWKEICAAFQAEKVK 506
Score = 324 bits (702), Expect = 1e-087
Identities = 143/168 (85%), Positives = 147/168 (87%)
Frame = -2 / -3
Query: 743 FTFSA*NAAQVFFQDLMAMSIGIQIQKLFAPMKYAQK*NGPTQKLKPSKYAVMK*TRHP* 564
FTFSA*NAA + FQDLMAMSIGIQIQKLFAPMKYAQK*NGPTQKLKPSKYAV+K*T+HP*
Sbjct: 505 FTFSA*NAAHISFQDLMAMSIGIQIQKLFAPMKYAQK*NGPTQKLKPSKYAVIK*TKHP* 326
Query: 563 SWPRQTANWRMWLKDFLDAIA*TASSDAGPSNTAVIPSTVTVAVSLATYLESPLLYSFQT 384
S PRQTANWR+WLK F D IA*TASSDAGPSNTAVIPSTVTVA SLATYLESPLLYSFQT
Sbjct: 325 S*PRQTANWRIWLKGFRDPIA*TASSDAGPSNTAVIPSTVTVAASLATYLESPLLYSFQT 146
Query: 383 XXXXXXXXXXXXXGVKTKGPSIIMWVNPVNAHQHMSRRSVLDNLTHLP 240
GVKTKGPSIIMWVNPVNAHQHMSRRSVLDNL HLP
Sbjct: 145 SSKKLGFSFLKKSGVKTKGPSIIMWVNPVNAHQHMSRRSVLDNLPHLP 2
Score = 317 bits (686), Expect = 2e-085
Identities = 130/159 (81%), Positives = 141/159 (88%)
Frame = -1 / -2
Query: 717 ASFLPGPYGDEHRYPDPEAVCANEIRPEVERADPEVEAVQVRGDEVNQASVELAQTDGEL 538
A FLPG YG+EHRYP+PE +C NEI PEVE DPEVEA+QV GD+VNQASVEL TDG+L
Sbjct: 479 AYFLPGSYGNEHRYPNPETICTNEICPEVEWTDPEVEAIQVCGDKVNQASVELT*TDGKL 300
Query: 537 ENVAEGLPGCNSVDSK**CRAFQYSGDPFDRNSCSVPSNIPRVSLTILFPNFIKEIGVLL 358
EN+AEGLPG NS+DSK *CRAFQYS DPF+ NSC VPSNIPRV LTILFPNFI+EIGVLL
Sbjct: 299 ENMAEGLPGSNSIDSKQ*CRAFQYSSDPFNSNSCGVPSNIPRVPLTILFPNFIEEIGVLL 120
Query: 357 LEEIRSEDKGPLDHYVGQPCKCPPAHEQTVGLG*SDTSS 241
LEEIRSEDKGPLDHYVGQPC+CPPAHEQTVGLG S TSS
Sbjct: 119 LEEIRSEDKGPLDHYVGQPCECPPAHEQTVGLGQSATSS 3
Score = 208 bits (449), Expect(2) = 2e-064
Identities = 91/110 (82%), Positives = 94/110 (85%)
Frame = +3 / +2
Query: 243 KMCQIIQDRPSAHVLVGIYRVDPHNDRGALCLHS*FLQEGEPQFL**SLERV**GRL*VC 422
KM QI+QDRPSAHVLVGI+RVDPHNDRGALCLHS*FLQEGEPQFL *SLERV**G L*VC
Sbjct: 5 KMWQIVQDRPSAHVLVGIHRVDPHNDRGALCLHS*FLQEGEPQFLR*SLERV**GGL*VC 184
Query: 423 C*GHCNCYGRRDHRCIGRPCITTCCLRYCIQEVLQPHSPVRRLSGPALRM 572
C*G NCY RDH CIGRPCIT CCL Y I E LQP+SPV RLS ALRM
Sbjct: 185 C*GRRNCYC*RDHCCIGRPCITACCLCYWIPEALQPYSPVCRLSRSALRM 334
Score = 186 bits (401), Expect(2) = 2e-054
Identities = 89/115 (77%), Positives = 94/115 (81%)
Frame = -3 / -1
Query: 586 *SKPGIRRAGPDRRRTGECG*RTSWXXXXXXXXXXQGLPIQR*SLRP*QLQCP*QHT*SL 407
*SKP IRRA DRR+TGE G*R S QGLPIQ+*SL+ *QL+ P*QHT*S
Sbjct: 348 *SKPSIRRADLDRRQTGEYG*RASGIQ*HRQQAVMQGLPIQQ*SLQQ*QLRRP*QHT*SP 169
Query: 406 PYYTLSKLHQRNWGSPS*RNQE*RQRAPRSLCGSTL*MPTST*ADGRSWII*HIF 242
PYYTLSKLH+RNWGSPS*RNQE*RQRAPRSLCGSTL*MPTST*ADGRSW I HIF
Sbjct: 168 PYYTLSKLHRRNWGSPS*RNQE*RQRAPRSLCGSTL*MPTST*ADGRSWTICHIF 4
Score = 114 bits (243), Expect(3) = 5e-036
Identities = 51/98 (52%), Positives = 52/98 (53%)
Frame = +2 / +1
Query: 452 KGSPLYWKALHHYLLSTLLHPGXXXXXXXXXXXXXXXXXDAWFTSSPRTWXXXXXXXXXX 631
KGS LYWKALHH LLS LL PG DAWFT SP TW
Sbjct: 214 KGSLLYWKALHHCLLSMLLDPGSPSAIFSSLPSV*VSSTDAWFTLSPHTWMASTSGSVHS 393
Query: 632 XXXXISLAQTASGSGYRCSSP*GPGRKLAPRFKLRR*R 745
ISL Q SG GYRCS P* PGRK A FKL+R*R
Sbjct: 394 TSGHISLVQIVSGFGYRCSLP*DPGRKYAQHFKLKR*R 507
Score = 59.7 bits (124), Expect(2) = 2e-064
Identities = 23/34 (67%), Positives = 28/34 (82%)
Frame = +3 / +2
Query: 645 FHWRKQLLDLDTDAHRHKVLEENLRRVSS*EGEE 746
FHW K LDLDTDAH HK+LE N+R +SS*+GE+
Sbjct: 407 FHWCK*FLDLDTDAHCHKILEGNMRSISS*KGED 508
Score = 53.8 bits (111), Expect(3) = 5e-036
Identities = 20/23 (86%), Positives = 21/23 (91%)
Frame = +2 / +1
Query: 242 EDVSDYPRPTVCSCAGGHLQG*P 310
EDV+D PRPTVCSCAGGH QG*P
Sbjct: 4 EDVADCPRPTVCSCAGGHSQG*P 72
Score = 47.8 bits (98), Expect(2) = 2e-054
Identities = 23/34 (67%), Positives = 26/34 (76%)
Frame = -3 / -1
Query: 745 SSPSQLETRRKFSSRTLWR*ASVSRSRSCLRQ*N 644
SSP QLE R F SR LW+*ASVS+SR+ L Q*N
Sbjct: 507 SSPFQLEMLRIFPSRILWQ*ASVSKSRNYLHQ*N 406
Score = 23.1 bits (44), Expect(3) = 5e-036
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +2 / +1
Query: 380 MKFGKSIVR 406
MKFGKSIVR
Sbjct: 142 MKFGKSIVR 168
Score = 22.1 bits (42), Expect(2) = e-113
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2 / +1
Query: 842 CTLCSNK 862
CTLCSNK
Sbjct: 613 CTLCSNK 633
>gb|BF317717.1|BF317717 OV1_12_E04.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 520
Score = 313 bits (678), Expect(2) = 1e-084
Identities = 125/130 (96%), Positives = 126/130 (96%)
Frame = +1 / +3
Query: 355 KKENPNFFDEVWKEYSKGDSRYVARDTATVTVEGITAVLEGPASLLAVYAIASRKSFSHI 534
KKENPNFFDEVWKEYSKGDSRYVARD ATVTVEGITAVLEGPASLLAVYAI SRK FSHI
Sbjct: 3 KKENPNFFDEVWKEYSKGDSRYVARDAATVTVEGITAVLEGPASLLAVYAIGSRKPFSHI 182
Query: 535 LQFAVCLGQLYGCLVYFITAYLDGFNFWVGPFYFWAYFIGANSFWIWIPMLIAIRSWKKT 714
LQFAVCLGQLYGCLVYFITAYLDGFNFWVGPFYFWAYFIGANSFWIWIPMLIAIRSWK+
Sbjct: 183 LQFAVCLGQLYGCLVYFITAYLDGFNFWVGPFYFWAYFIGANSFWIWIPMLIAIRSWKEI 362
Query: 715 CAAFQAEKVK 744
CAAFQAEKVK
Sbjct: 363 CAAFQAEKVK 392
Score = 248 bits (535), Expect(2) = 4e-065
Identities = 109/120 (90%), Positives = 113/120 (94%)
Frame = -2 / -1
Query: 743 FTFSA*NAAQVFFQDLMAMSIGIQIQKLFAPMKYAQK*NGPTQKLKPSKYAVMK*TRHP* 564
FTFSA*NAA + FQDLMAMSIGIQIQKLFAPMKYAQK*NGPTQKLKPSKYAV+K*T+HP*
Sbjct: 391 FTFSA*NAAHISFQDLMAMSIGIQIQKLFAPMKYAQK*NGPTQKLKPSKYAVIK*TKHP* 212
Query: 563 SWPRQTANWRMWLKDFLDAIA*TASSDAGPSNTAVIPSTVTVAVSLATYLESPLLYSFQT 384
S PRQTANWR+WLK F D IA*TASSDAGPSNTAVIPSTVTVA SLATYLESPLLYSFQT
Sbjct: 211 S*PRQTANWRIWLKGFRDPIA*TASSDAGPSNTAVIPSTVTVAASLATYLESPLLYSFQT 32
Score = 230 bits (496), Expect = 3e-059
Identities = 95/121 (78%), Positives = 105/121 (86%)
Frame = -1 / -3
Query: 717 ASFLPGPYGDEHRYPDPEAVCANEIRPEVERADPEVEAVQVRGDEVNQASVELAQTDGEL 538
A FLPG YG+EHRYP+PE +C NEI PEVE DPEVEA+QV GD+VNQASVEL TDG+L
Sbjct: 365 AYFLPGSYGNEHRYPNPETICTNEICPEVEWTDPEVEAIQVCGDKVNQASVELT*TDGKL 186
Query: 537 ENVAEGLPGCNSVDSK**CRAFQYSGDPFDRNSCSVPSNIPRVSLTILFPNFIKEIGVLL 358
EN+AEGLPG NS+DSK *CRAFQYS DPF+ NSC VPSNIPRV LTILFPNFI+EIGVLL
Sbjct: 185 ENMAEGLPGSNSIDSKQ*CRAFQYSSDPFNSNSCGVPSNIPRVPLTILFPNFIEEIGVLL 6
Query: 357 L 355
L
Sbjct: 5 L 3
Score = 126 bits (269), Expect(2) = 7e-040
Identities = 57/73 (78%), Positives = 58/73 (79%)
Frame = +3 / +2
Query: 354 QEGEPQFL**SLERV**GRL*VCC*GHCNCYGRRDHRCIGRPCITTCCLRYCIQEVLQPH 533
QEGEPQFL *SLERV**G L*VCC*G NCY RDH CIGRPCIT CCL Y I E LQP+
Sbjct: 2 QEGEPQFLR*SLERV**GGL*VCC*GRRNCYC*RDHCCIGRPCITACCLCYWIPEALQPY 181
Query: 534 SPVRRLSGPALRM 572
SPV RLS ALRM
Sbjct: 182 SPVCRLSRSALRM 220
Score = 114 bits (243), Expect(2) = 2e-025
Identities = 51/98 (52%), Positives = 52/98 (53%)
Frame = +2 / +1
Query: 452 KGSPLYWKALHHYLLSTLLHPGXXXXXXXXXXXXXXXXXDAWFTSSPRTWXXXXXXXXXX 631
KGS LYWKALHH LLS LL PG DAWFT SP TW
Sbjct: 100 KGSLLYWKALHHCLLSMLLDPGSPSAIFSSLPSV*VSSTDAWFTLSPHTWMASTSGSVHS 279
Query: 632 XXXXISLAQTASGSGYRCSSP*GPGRKLAPRFKLRR*R 745
ISL Q SG GYRCS P* PGRK A FKL+R*R
Sbjct: 280 TSGHISLVQIVSGFGYRCSLP*DPGRKYAQHFKLKR*R 393
Score = 108 bits (231), Expect(2) = 4e-031
Identities = 54/78 (69%), Positives = 59/78 (75%)
Frame = -3 / -2
Query: 586 *SKPGIRRAGPDRRRTGECG*RTSWXXXXXXXXXXQGLPIQR*SLRP*QLQCP*QHT*SL 407
*SKP IRRA DRR+TGE G*R S QGLPIQ+*SL+ *QL+ P*QHT*S
Sbjct: 234 *SKPSIRRADLDRRQTGEYG*RASGIQ*HRQQAVMQGLPIQQ*SLQQ*QLRRP*QHT*SP 55
Query: 406 PYYTLSKLHQRNWGSPS* 353
PYYTLSKLH+RNWGSPS*
Sbjct: 54 PYYTLSKLHRRNWGSPS* 1
Score = 59.7 bits (124), Expect(2) = 7e-040
Identities = 23/34 (67%), Positives = 28/34 (82%)
Frame = +3 / +2
Query: 645 FHWRKQLLDLDTDAHRHKVLEENLRRVSS*EGEE 746
FHW K LDLDTDAH HK+LE N+R +SS*+GE+
Sbjct: 293 FHWCK*FLDLDTDAHCHKILEGNMRSISS*KGED 394
Score = 47.8 bits (98), Expect(2) = 4e-031
Identities = 23/34 (67%), Positives = 26/34 (76%)
Frame = -3 / -2
Query: 745 SSPSQLETRRKFSSRTLWR*ASVSRSRSCLRQ*N 644
SSP QLE R F SR LW+*ASVS+SR+ L Q*N
Sbjct: 393 SSPFQLEMLRIFPSRILWQ*ASVSKSRNYLHQ*N 292
Score = 23.1 bits (44), Expect(2) = 2e-025
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +2 / +1
Query: 380 MKFGKSIVR 406
MKFGKSIVR
Sbjct: 28 MKFGKSIVR 54
Score = 22.1 bits (42), Expect(2) = 1e-084
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = +3 / +1
Query: 822 WYWKLHD 842
WYWKL D
Sbjct: 481 WYWKLPD 501
Score = 22.1 bits (42), Expect(2) = 4e-065
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3 / -2
Query: 829 QYQPTQEFKPSK*RSPIKR*LKTAFIWSS 743
++Q T + + PIK L+ AF WSS
Sbjct: 474 EFQTTNDVLHIEVLVPIKWWLRQAFNWSS 388
>gb|BE363877.1|BE363877 PI1_10_D05.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 472
Score = 284 bits (614), Expect = 2e-075
Identities = 111/147 (75%), Positives = 125/147 (85%)
Frame = +1 / +2
Query: 253 RLSKTDRLLMCWWAFTGLTHIMIEGPFVFTPDFFKKENPNFFDEVWKEYSKGDSRYVARD 432
RLSKTDRLL+ WW FT L HI+ E PF+FTPDF KENPNFFDE++KEYSKGDSRY +R+
Sbjct: 29 RLSKTDRLLLGWWVFTALAHIVFEPPFLFTPDFLSKENPNFFDEMFKEYSKGDSRYASRN 208
Query: 433 TATVTVEGITAVLEGPASLLAVYAIASRKSFSHILQFAVCLGQLYGCLVYFITAYLDGFN 612
T + +E IT +GPASLLAVYAIASRKS+SHILQFAV L QLYGCLVYFITAYLDGFN
Sbjct: 209 TVVLALEVITVGFKGPASLLAVYAIASRKSYSHILQFAVSLSQLYGCLVYFITAYLDGFN 388
Query: 613 FWVGPFYFWAYFIGANSFWIWIPMLIA 693
FWV PFYFWAYFIG+NS W+ IP L+A
Sbjct: 389 FWVSPFYFWAYFIGSNSSWVIIPTLVA 469
Score = 189 bits (407), Expect = 6e-047
Identities = 89/148 (60%), Positives = 98/148 (66%)
Frame = -2 / -2
Query: 695 MAMSIGIQIQKLFAPMKYAQK*NGPTQKLKPSKYAVMK*TRHP*SWPRQTANWRMWLKDF 516
+A S+G+ +L PMKYAQK*NG TQKLKPSKYAVMK*T+HP SW R+TANWRMWL DF
Sbjct: 471 VATSVGMITHELLEPMKYAQK*NGLTQKLKPSKYAVMK*TKHPYSWLRETANWRMWLYDF 292
Query: 515 LDAIA*TASSDAGPSNTAVIPSTVTVAVSLATYLESPLLYSFQTXXXXXXXXXXXXXGVK 336
DAIA*TA SDAGP N VI S+ V YLESPLLYS GVK
Sbjct: 291 RDAIA*TARSDAGPLNPTVITSSARTTVFREAYLESPLLYSLNISSKKFGFSLLRKSGVK 112
Query: 335 TKGPSIIMWVNPVNAHQHMSRRSVLDNL 252
KG S M + VN HQ S+RSVLDNL
Sbjct: 111 RKGGSKTM*ASAVNTHQPKSKRSVLDNL 28
Score = 179 bits (386), Expect = 4e-044
Identities = 84/151 (55%), Positives = 103/151 (68%)
Frame = -1 / -1
Query: 693 GDEHRYPDPEAVCANEIRPEVERADPEVEAVQVRGDEVNQASVELAQTDGELENVAEGLP 514
GDE RY P V +EI PEVER DPEVEA+QVRGDEVNQASV LAQ +GELE+VA LP
Sbjct: 469 GDERRYDHP*TVGTDEICPEVERTDPEVEAIQVRGDEVNQASV*LAQRNGELEDVAVRLP 290
Query: 513 GCNSVDSK**CRAFQYSGDPFDRNSCSVPSNIPRVSLTILFPNFIKEIGVLLLEEIRSED 334
GCN +D K CRAF+ + F SVP + V+ +LF + ++EI VLL EEIR E+
Sbjct: 289 GCNRIDCKKRCRAFEPNSYHFKCEDYSVPRGVSGVTFAVLFKHLVEEIWVLLAEEIRGEE 110
Query: 333 KGPLDHYVGQPCKCPPAHEQTVGLG*SDTSS 241
+G L+ V Q + PPA EQ VGLG*S ++
Sbjct: 109 EGWLEDDVSQRGEHPPAQEQAVGLG*STAAA 17
>gb|BF420890.1|BF420890 OV1_12_E04.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 377
Score = 246 bits (532), Expect = 3e-064
Identities = 99/119 (83%), Positives = 101/119 (84%)
Frame = +1 / +2
Query: 58 QIGXXXXXXXXXXXXTSMGHPYAPAELDLPGFVPLKLSQVEILVSYLGASVFVFLAVWLV 237
+IG SMGHPYAPAELDLPGFVPLKLSQ EIL YLGAS+FV LAVWLV
Sbjct: 17 RIGG*RKAEQATAAAASMGHPYAPAELDLPGFVPLKLSQAEILXXYLGASLFVLLAVWLV 196
Query: 238 SGRCVRLSKTDRLLMCWWAFTGLTHIMIEGPFVFTPDFFKKENPNFFDEVWKEYSKGDS 414
SGRC RLSKTDRLLMCWWAFTGLTHIMIEGPFVFTPDFFKKENPNFFDEVWKEYSKGDS
Sbjct: 197 SGRCGRLSKTDRLLMCWWAFTGLTHIMIEGPFVFTPDFFKKENPNFFDEVWKEYSKGDS 373
Score = 196 bits (423), Expect = 3e-049
Identities = 86/118 (72%), Positives = 87/118 (73%)
Frame = -2 / -3
Query: 413 ESPLLYSFQTXXXXXXXXXXXXXGVKTKGPSIIMWVNPVNAHQHMSRRSVLDNLTHLPET 234
ESPLLYSFQT GVKTKGPSIIMWVNPVNAHQHMSRRSVLDNL HLPET
Sbjct: 372 ESPLLYSFQTSSKKLGFSFLKKSGVKTKGPSIIMWVNPVNAHQHMSRRSVLDNLPHLPET 193
Query: 233 SQTARKTKTEAPR*DTRISTWDSFSGTKPGRSSSAGA*GCPIDVXXXXXXXXXXXAPI 60
SQTAR+TK EAPR* RIS WDSFSGTKPGRSSSAGA*GCPID PI
Sbjct: 192 SQTARRTKREAPR*XXRISAWDSFSGTKPGRSSSAGA*GCPIDAAAAVACSALRQPPI 19
Score = 129 bits (276), Expect(2) = 4e-048
Identities = 53/58 (91%), Positives = 55/58 (94%)
Frame = -1 / -2
Query: 414 RVSLTILFPNFIKEIGVLLLEEIRSEDKGPLDHYVGQPCKCPPAHEQTVGLG*SDTSS 241
RV LTILFPNFI+EIGVLLLEEIRSEDKGPLDHYVGQPC+CPPAHEQTVGLG S TSS
Sbjct: 373 RVPLTILFPNFIEEIGVLLLEEIRSEDKGPLDHYVGQPCECPPAHEQTVGLGQSATSS 200
Score = 127 bits (273), Expect(2) = 2e-043
Identities = 55/59 (93%), Positives = 56/59 (94%)
Frame = -3 / -1
Query: 418 T*SLPYYTLSKLHQRNWGSPS*RNQE*RQRAPRSLCGSTL*MPTST*ADGRSWII*HIF 242
T*S PYYTLSKLH+RNWGSPS*RNQE*RQRAPRSLCGSTL*MPTST*ADGRSW I HIF
Sbjct: 377 T*SPPYYTLSKLHRRNWGSPS*RNQE*RQRAPRSLCGSTL*MPTST*ADGRSWTICHIF 201
Score = 118 bits (252), Expect(2) = 5e-040
Identities = 52/57 (91%), Positives = 54/57 (94%)
Frame = +3 / +1
Query: 243 KMCQIIQDRPSAHVLVGIYRVDPHNDRGALCLHS*FLQEGEPQFL**SLERV**GRL 413
KM QI+QDRPSAHVLVGI+RVDPHNDRGALCLHS*FLQEGEPQFL *SLERV**G L
Sbjct: 202 KMWQIVQDRPSAHVLVGIHRVDPHNDRGALCLHS*FLQEGEPQFLR*SLERV**GGL 372
Score = 84.0 bits (177), Expect(2) = 4e-048
Identities = 35/44 (79%), Positives = 37/44 (84%)
Frame = -1 / -2
Query: 186 EDLDLGQLQRHETRKVQLGWRVRVPH*RRCGHRLLGLASGADLG 55
EDL LGQLQRHE R++Q G RVRVPH*RRCG RLLGLAS AD G
Sbjct: 145 EDLGLGQLQRHEARQIQFGRRVRVPH*RRCGRRLLGLASAADSG 14
Score = 69.8 bits (146), Expect(2) = 2e-043
Identities = 29/36 (80%), Positives = 30/36 (83%)
Frame = -3 / -1
Query: 169 TASAARNPEGPARLARKGAPLTSLRPSPARPCVGRR 62
TASAAR+P P R ARKGAPLT LRPSPARPCV RR
Sbjct: 128 TASAARSPADPVRPARKGAPLTPLRPSPARPCVSRR 21
Score = 68.0 bits (142), Expect(2) = 5e-040
Identities = 29/37 (78%), Positives = 31/37 (83%)
Frame = +3 / +1
Query: 60 DRRPTQGRAGDGRSDVNGAPLRASRAGPSGFRAAEAV 170
+RR TQGRAGDGRS VNGAPLRA R G +G RAAEAV
Sbjct: 19 NRRLTQGRAGDGRSGVNGAPLRAGRTGSAGLRAAEAV 129
>gb|CW463673.1|CW463673 fsbb001f212h05k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f212h05, DNA
sequence
Length = 753
Score = 175 bits (377), Expect(2) = 2e-053
Identities = 69/82 (84%), Positives = 73/82 (89%)
Frame = +1 / -3
Query: 499 YAIASRKSFSHILQFAVCLGQLYGCLVYFITAYLDGFNFWVGPFYFWAYFIGANSFWIWI 678
YAIASRKS+SHILQFAV L QLYGCLVYFITAYLDGFNFWV PFYFWAYFIG+NS W+ I
Sbjct: 346 YAIASRKSYSHILQFAVSLSQLYGCLVYFITAYLDGFNFWVSPFYFWAYFIGSNSSWVII 167
Query: 679 PMLIAIRSWKKTCAAFQAEKVK 744
P L+A RSWKK AAFQAEKVK
Sbjct: 166 PTLVATRSWKKISAAFQAEKVK 101
Score = 141 bits (303), Expect(2) = 2e-040
Identities = 61/81 (75%), Positives = 69/81 (85%)
Frame = -2 / +3
Query: 740 TFSA*NAAQVFFQDLMAMSIGIQIQKLFAPMKYAQK*NGPTQKLKPSKYAVMK*TRHP*S 561
TFSA*NAA++FFQ L+A S+G+ +L PMKYAQK*NG TQKLKPSKYAVMK*T+HP S
Sbjct: 105 TFSA*NAAEIFFQLLVATSVGMITHELLEPMKYAQK*NGLTQKLKPSKYAVMK*TKHPYS 284
Query: 560 WPRQTANWRMWLKDFLDAIA* 498
W R+TANWRMWL DF DAIA*
Sbjct: 285 WLRETANWRMWLYDFRDAIA* 347
Score = 113 bits (241), Expect(2) = 4e-026
Identities = 49/72 (68%), Positives = 55/72 (76%)
Frame = -1 / +2
Query: 714 SFLPGPYGDEHRYPDPEAVCANEIRPEVERADPEVEAVQVRGDEVNQASVELAQTDGELE 535
+ LP P GDE RY P V +EI PEVER DPEVEA+QVRGDEVNQASV LAQ +GELE
Sbjct: 131 NLLPAPCGDERRYDHP*TVGTDEICPEVERTDPEVEAIQVRGDEVNQASV*LAQRNGELE 310
Query: 534 NVAEGLPGCNSV 499
+VA LPGCN +
Sbjct: 311 DVAVRLPGCNRI 346
Score = 55.6 bits (115), Expect(2) = 2e-053
Identities = 25/46 (54%), Positives = 31/46 (67%)
Frame = +1 / -3
Query: 361 ENPNFFDEVWKEYSKGDSRYVARDTATVTVEGITAVLEGPASLLAV 498
+ N D KEYSKGDSRY +R+T + +E IT +GPASLLAV
Sbjct: 589 DRANANDVSVKEYSKGDSRYASRNTVVLALEVITVGFKGPASLLAV 452
Score = 46.0 bits (94), Expect(2) = 2e-040
Identities = 21/35 (60%), Positives = 22/35 (62%)
Frame = -2 / +3
Query: 497 TASSDAGPSNTAVIPSTVTVAVSLATYLESPLLYS 393
TA SDAGP N VI S+ V YLESPLLYS
Sbjct: 453 TARSDAGPLNPTVITSSARTTVFREAYLESPLLYS 557
Score = 26.3 bits (51), Expect(2) = 4e-026
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1 / +2
Query: 483 CRAFQYSGDPFDRNSCSVPSNIPRVSLTILF 391
CRAF+ + F SVP + V+ +LF
Sbjct: 467 CRAFEPNSYHFKCEDYSVPRGVSGVTFAVLF 559
>gb|CW478862.1|CW478862 fsbb001f236p10f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f236p10, DNA
sequence
Length = 619
Score = 175 bits (377), Expect(2) = 2e-053
Identities = 69/82 (84%), Positives = 73/82 (89%)
Frame = +1 / -3
Query: 499 YAIASRKSFSHILQFAVCLGQLYGCLVYFITAYLDGFNFWVGPFYFWAYFIGANSFWIWI 678
YAIASRKS+SHILQFAV L QLYGCLVYFITAYLDGFNFWV PFYFWAYFIG+NS W+ I
Sbjct: 275 YAIASRKSYSHILQFAVSLSQLYGCLVYFITAYLDGFNFWVSPFYFWAYFIGSNSSWVII 96
Query: 679 PMLIAIRSWKKTCAAFQAEKVK 744
P L+A RSWKK AAFQAEKVK
Sbjct: 95 PTLVATRSWKKISAAFQAEKVK 30
Score = 141 bits (303), Expect(2) = 2e-040
Identities = 61/81 (75%), Positives = 69/81 (85%)
Frame = -2 / +1
Query: 740 TFSA*NAAQVFFQDLMAMSIGIQIQKLFAPMKYAQK*NGPTQKLKPSKYAVMK*TRHP*S 561
TFSA*NAA++FFQ L+A S+G+ +L PMKYAQK*NG TQKLKPSKYAVMK*T+HP S
Sbjct: 34 TFSA*NAAEIFFQLLVATSVGMITHELLEPMKYAQK*NGLTQKLKPSKYAVMK*TKHPYS 213
Query: 560 WPRQTANWRMWLKDFLDAIA* 498
W R+TANWRMWL DF DAIA*
Sbjct: 214 WLRETANWRMWLYDFRDAIA* 276
Score = 113 bits (241), Expect(2) = 4e-026
Identities = 49/72 (68%), Positives = 55/72 (76%)
Frame = -1 / +3
Query: 714 SFLPGPYGDEHRYPDPEAVCANEIRPEVERADPEVEAVQVRGDEVNQASVELAQTDGELE 535
+ LP P GDE RY P V +EI PEVER DPEVEA+QVRGDEVNQASV LAQ +GELE
Sbjct: 60 NLLPAPCGDERRYDHP*TVGTDEICPEVERTDPEVEAIQVRGDEVNQASV*LAQRNGELE 239
Query: 534 NVAEGLPGCNSV 499
+VA LPGCN +
Sbjct: 240 DVAVRLPGCNRI 275
Score = 55.6 bits (115), Expect(2) = 2e-053
Identities = 25/46 (54%), Positives = 31/46 (67%)
Frame = +1 / -3
Query: 361 ENPNFFDEVWKEYSKGDSRYVARDTATVTVEGITAVLEGPASLLAV 498
+ N D KEYSKGDSRY +R+T + +E IT +GPASLLAV
Sbjct: 518 DRANANDVSVKEYSKGDSRYASRNTVVLALEVITVGFKGPASLLAV 381
Score = 46.0 bits (94), Expect(2) = 2e-040
Identities = 21/35 (60%), Positives = 22/35 (62%)
Frame = -2 / +1
Query: 497 TASSDAGPSNTAVIPSTVTVAVSLATYLESPLLYS 393
TA SDAGP N VI S+ V YLESPLLYS
Sbjct: 382 TARSDAGPLNPTVITSSARTTVFREAYLESPLLYS 486
Score = 26.3 bits (51), Expect(2) = 4e-026
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1 / +3
Query: 483 CRAFQYSGDPFDRNSCSVPSNIPRVSLTILF 391
CRAF+ + F SVP + V+ +LF
Sbjct: 396 CRAFEPNSYHFKCEDYSVPRGVSGVTFAVLF 488
>gb|CW184700.1|CW184700 104_602_11165672_148_36691_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11165672, DNA
sequence
Length = 654
Score = 134 bits (287), Expect(3) = 6e-053
Identities = 51/57 (89%), Positives = 53/57 (92%)
Frame = +1 / -1
Query: 499 YAIASRKSFSHILQFAVCLGQLYGCLVYFITAYLDGFNFWVGPFYFWAYFIGANSFW 669
YAIASRKS+SHILQFAV L QLYGCLVYFITAYLDGFNFWV PFYFWAYFIG+NS W
Sbjct: 171 YAIASRKSYSHILQFAVSLSQLYGCLVYFITAYLDGFNFWVSPFYFWAYFIGSNSSW 1
Score = 109 bits (233), Expect(3) = 6e-034
Identities = 46/56 (82%), Positives = 49/56 (87%)
Frame = -2 / +2
Query: 665 KLFAPMKYAQK*NGPTQKLKPSKYAVMK*TRHP*SWPRQTANWRMWLKDFLDAIA* 498
+L PMKYAQK*NG TQKLKPSKYAVMK*T+HP SW R+TANWRMWL DF DAIA*
Sbjct: 5 ELLEPMKYAQK*NGLTQKLKPSKYAVMK*TKHPYSWLRETANWRMWLYDFRDAIA* 172
Score = 61.6 bits (128), Expect(3) = 6e-053
Identities = 22/31 (70%), Positives = 25/31 (80%)
Frame = +1 / -3
Query: 295 FTGLTHIMIEGPFVFTPDFFKKENPNFFDEV 387
FT L HI+ E PF+FTPDF KENPNFFDE+
Sbjct: 649 FTALAHIVFEPPFLFTPDFLSKENPNFFDEM 557
Score = 55.6 bits (115), Expect(3) = 6e-053
Identities = 25/46 (54%), Positives = 31/46 (67%)
Frame = +1 / -1
Query: 361 ENPNFFDEVWKEYSKGDSRYVARDTATVTVEGITAVLEGPASLLAV 498
+ N D KEYSKGDSRY +R+T + +E IT +GPASLLAV
Sbjct: 414 DRANANDVSVKEYSKGDSRYASRNTVVLALEVITVGFKGPASLLAV 277
Score = 46.0 bits (94), Expect(3) = 6e-034
Identities = 21/35 (60%), Positives = 22/35 (62%)
Frame = -2 / +2
Query: 497 TASSDAGPSNTAVIPSTVTVAVSLATYLESPLLYS 393
TA SDAGP N VI S+ V YLESPLLYS
Sbjct: 278 TARSDAGPLNPTVITSSARTTVFREAYLESPLLYS 382
Score = 31.8 bits (63), Expect(3) = 6e-034
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = -1 / +2
Query: 387 NFIKEIGVLLLEEIRSEDKGPLDHYVGQ 304
+ ++EI VLL EEIR E++G L+ V Q
Sbjct: 557 HLVEEIWVLLAEEIRGEEEGWLEDDVSQ 640
>gb|CW174081.1|CW174081 104_586_11157200_148_36564_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11157200, DNA
sequence
Length = 603
Score = 205 bits (442), Expect = 8e-052
Identities = 79/82 (96%), Positives = 80/82 (97%)
Frame = +1 / +3
Query: 499 YAIASRKSFSHILQFAVCLGQLYGCLVYFITAYLDGFNFWVGPFYFWAYFIGANSFWIWI 678
YAI SRKSFSHILQFAVCLGQLYGCLVYFITAYLDGFNFWVGPFYFWAYFIGANSFWIWI
Sbjct: 24 YAIGSRKSFSHILQFAVCLGQLYGCLVYFITAYLDGFNFWVGPFYFWAYFIGANSFWIWI 203
Query: 679 PMLIAIRSWKKTCAAFQAEKVK 744
PMLIAIRSWK+ CAAFQAEKVK
Sbjct: 204 PMLIAIRSWKEICAAFQAEKVK 269
Score = 170 bits (365), Expect(2) = 6e-042
Identities = 73/86 (84%), Positives = 79/86 (91%)
Frame = -2 / -3
Query: 755 YLVFFTFSA*NAAQVFFQDLMAMSIGIQIQKLFAPMKYAQK*NGPTQKLKPSKYAVMK*T 576
+ + FTFSA*NAA + FQDLMAMSIGIQIQKLFAPMKYAQK*NGPTQKLKPSKYAV+K*T
Sbjct: 280 FYLVFTFSA*NAAHISFQDLMAMSIGIQIQKLFAPMKYAQK*NGPTQKLKPSKYAVIK*T 101
Query: 575 RHP*SWPRQTANWRMWLKDFLDAIA* 498
+HP*S PRQTANWR+WLKDF D IA*
Sbjct: 100 KHP*S*PRQTANWRIWLKDFRDPIA* 23
Score = 132 bits (282), Expect = 1e-029
Identities = 53/73 (72%), Positives = 61/73 (83%)
Frame = -1 / -2
Query: 717 ASFLPGPYGDEHRYPDPEAVCANEIRPEVERADPEVEAVQVRGDEVNQASVELAQTDGEL 538
A FLPG YG+EHRYP+PE +C NEI PEVE DPEVEA+QV D+VNQASVEL TDG+L
Sbjct: 242 AYFLPGSYGNEHRYPNPETICTNEICPEVEWTDPEVEAIQVCSDKVNQASVELT*TDGKL 63
Query: 537 ENVAEGLPGCNSV 499
EN+AEGLPG NS+
Sbjct: 62 ENMAEGLPGSNSI 24
Score = 22.6 bits (43), Expect(2) = 6e-042
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3 / -1
Query: 766 KTAFIWSS 743
KTAFIWSS
Sbjct: 288 KTAFIWSS 265
>gb|CW422004.1|CW422004 fsbb001f131b07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f131b07, DNA
sequence
Length = 530
Score = 198 bits (427), Expect = 1e-049
Identities = 76/78 (97%), Positives = 77/78 (98%)
Frame = +1 / +3
Query: 511 SRKSFSHILQFAVCLGQLYGCLVYFITAYLDGFNFWVGPFYFWAYFIGANSFWIWIPMLI 690
SRKSFSHILQFAVCLGQLYGCLVYFITAYLDGFNFWVGPFYFWAYFIGANSFWIWIPMLI
Sbjct: 6 SRKSFSHILQFAVCLGQLYGCLVYFITAYLDGFNFWVGPFYFWAYFIGANSFWIWIPMLI 185
Query: 691 AIRSWKKTCAAFQAEKVK 744
AIRSWK+ CAAFQAEKVK
Sbjct: 186 AIRSWKEICAAFQAEKVK 239
Score = 166 bits (357), Expect(2) = 8e-041
Identities = 70/82 (85%), Positives = 76/82 (92%)
Frame = -2 / -2
Query: 755 YLVFFTFSA*NAAQVFFQDLMAMSIGIQIQKLFAPMKYAQK*NGPTQKLKPSKYAVMK*T 576
+ + FTFSA*NAA + FQDLMAMSIGIQIQKLFAPMKYAQK*NGPTQKLKPSKYAV+K*T
Sbjct: 250 FYLVFTFSA*NAAHISFQDLMAMSIGIQIQKLFAPMKYAQK*NGPTQKLKPSKYAVIK*T 71
Query: 575 RHP*SWPRQTANWRMWLKDFLD 510
+HP*S PRQTANWR+WLKDF D
Sbjct: 70 KHP*S*PRQTANWRIWLKDFRD 5
Score = 126 bits (270), Expect = 4e-028
Identities = 51/69 (73%), Positives = 58/69 (84%)
Frame = -1 / -1
Query: 717 ASFLPGPYGDEHRYPDPEAVCANEIRPEVERADPEVEAVQVRGDEVNQASVELAQTDGEL 538
A FLPG YG+EHRYP+PE +C NEI PEVE DPEVEA+QV D+VNQASVEL TDG+L
Sbjct: 212 AYFLPGSYGNEHRYPNPETICTNEICPEVEWTDPEVEAIQVCSDKVNQASVELT*TDGKL 33
Query: 537 ENVAEGLPG 511
EN+AEGLPG
Sbjct: 32 ENMAEGLPG 6
Score = 22.6 bits (43), Expect(2) = 8e-041
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3 / -3
Query: 766 KTAFIWSS 743
KTAFIWSS
Sbjct: 258 KTAFIWSS 235
>gb|BE363946.1|BE363946 PI1_10_D05.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 460
Score = 190 bits (409), Expect = 3e-047
Identities = 77/105 (73%), Positives = 85/105 (80%)
Frame = +1 / +3
Query: 430 DTATVTVEGITAVLEGPASLLAVYAIASRKSFSHILQFAVCLGQLYGCLVYFITAYLDGF 609
+T + +E IT +GPASL AVYAIASRK +SHILQFAV L QLYGCLVYFI YLDGF
Sbjct: 3 NTVVLALEVITVGFKGPASLFAVYAIASRKWYSHILQFAVFLSQLYGCLVYFIPGYLDGF 182
Query: 610 NFWVGPFYFWAYFIGANSFWIWIPMLIAIRSWKKTCAAFQAEKVK 744
NFWV PFYFWAYFIG+NS W+ IP L+A RSWKK AAFQAEKVK
Sbjct: 183 NFWVSPFYFWAYFIGSNSSWVIIPTLVATRSWKKISAAFQAEKVK 317
Score = 155 bits (334), Expect = 7e-037
Identities = 69/103 (66%), Positives = 79/103 (76%)
Frame = -2 / -1
Query: 740 TFSA*NAAQVFFQDLMAMSIGIQIQKLFAPMKYAQK*NGPTQKLKPSKYAVMK*TRHP*S 561
TFSA*NAA++FFQ L+A S+G+ +L PMKYAQK*NG TQKLKPSKY MK*T+HP S
Sbjct: 313 TFSA*NAAEIFFQLLVATSVGMITHELLEPMKYAQK*NGLTQKLKPSKYPGMK*TKHPYS 134
Query: 560 WPRQTANWRMWLKDFLDAIA*TASSDAGPSNTAVIPSTVTVAV 432
W ++TANWRMWL F DAIA*TA SDAGP N VI S+ V
Sbjct: 133 WLKKTANWRMWLYHFRDAIA*TAKSDAGPLNPTVITSSARTTV 5
Score = 117 bits (250), Expect = 3e-025
Identities = 54/95 (56%), Positives = 65/95 (68%)
Frame = -1 / -3
Query: 714 SFLPGPYGDEHRYPDPEAVCANEIRPEVERADPEVEAVQVRGDEVNQASVELAQTDGELE 535
+ LP P GDE RY P V +EI P+VER DP+VEA+QV GDEVNQASV LAQ +GELE
Sbjct: 287 NLLPAPCGDERRYDHP*TVGTDEICPKVERTDPKVEAIQVPGDEVNQASV*LAQKNGELE 108
Query: 534 NVAEGLPGCNSVDSK**CRAFQYSGDPFDRNSCSV 430
+VA LPGCN ++ K CRAF+ + F SV
Sbjct: 107 DVAVPLPGCNRINCKKRCRAFEPNSYHFKCEDYSV 3
>gb|CW112406.1|CW112406 104_486_11104870_116_34546_091 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11104870, DNA
sequence
Length = 553
Score = 188 bits (404), Expect = 1e-046
Identities = 71/86 (82%), Positives = 77/86 (89%)
Frame = +1 / -3
Query: 499 YAIASRKSFSHILQFAVCLGQLYGCLVYFITAYLDGFNFWVGPFYFWAYFIGANSFWIWI 678
YAIAS KS+SHILQF VCLGQLYGCLVYFITAYL GFNFW+ PFYFWAYFIGANSFW+WI
Sbjct: 434 YAIASHKSYSHILQFTVCLGQLYGCLVYFITAYLAGFNFWITPFYFWAYFIGANSFWVWI 255
Query: 679 PMLIAIRSWKKTCAAFQAEKVKKTK* 756
P LIA+RSWK CAAF+ EK KKT+*
Sbjct: 254 PTLIAMRSWKIICAAFRTEKAKKTR* 177
Score = 147 bits (316), Expect = 2e-034
Identities = 67/86 (77%), Positives = 72/86 (83%)
Frame = -2 / +1
Query: 755 YLVFFTFSA*NAAQVFFQDLMAMSIGIQIQKLFAPMKYAQK*NGPTQKLKPSKYAVMK*T 576
YLVFF FS NAAQ+ FQ LMAMS+GIQ QKLFAPMKYAQK*NG QKLKP+KYAVMK*T
Sbjct: 178 YLVFFAFSVRNAAQMIFQLLMAMSVGIQTQKLFAPMKYAQK*NGVIQKLKPAKYAVMK*T 357
Query: 575 RHP*SWPRQTANWRMWLKDFLDAIA* 498
RHP*SWPRQT N R+ L D DA+A*
Sbjct: 358 RHP*SWPRQTVN*RI*L*DLWDAMA* 435
Score = 114 bits (243), Expect = 2e-024
Identities = 46/73 (63%), Positives = 56/73 (76%)
Frame = -1 / +3
Query: 717 ASFLPGPYGDEHRYPDPEAVCANEIRPEVERADPEVEAVQVRGDEVNQASVELAQTDGEL 538
A+ LP P+G+E YP+PE VC NEI PE+E +DPEVEA QVR DEVN+A VELAQ D EL
Sbjct: 216 ANDLPAPHGNERWYPNPETVCTNEICPEIEWSDPEVEASQVRSDEVNKAPVELAQADSEL 395
Query: 537 ENVAEGLPGCNSV 499
+N+ GL GCN +
Sbjct: 396 KNMTIGLVGCNGI 434
>gb|CW467334.1|CW467334 fsbb001f218p20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f218p20, DNA
sequence
Length = 447
Score = 174 bits (374), Expect(2) = 2e-044
Identities = 68/82 (82%), Positives = 73/82 (89%)
Frame = +1 / -1
Query: 499 YAIASRKSFSHILQFAVCLGQLYGCLVYFITAYLDGFNFWVGPFYFWAYFIGANSFWIWI 678
YAIASRKS+SHILQFAV L QLYGCLVYF+TAYLDGFNFWV PFYFWAYFIG+NS W+ I
Sbjct: 276 YAIASRKSYSHILQFAVSLSQLYGCLVYFMTAYLDGFNFWVSPFYFWAYFIGSNSSWVII 97
Query: 679 PMLIAIRSWKKTCAAFQAEKVK 744
P L+A RSWKK AAFQAEKVK
Sbjct: 96 PTLVATRSWKKISAAFQAEKVK 31
Score = 141 bits (303), Expect = 1e-032
Identities = 61/81 (75%), Positives = 69/81 (85%)
Frame = -2 / +2
Query: 740 TFSA*NAAQVFFQDLMAMSIGIQIQKLFAPMKYAQK*NGPTQKLKPSKYAVMK*TRHP*S 561
TFSA*NAA++FFQ L+A S+G+ +L PMKYAQK*NG TQKLKPSKYAVMK*T+HP S
Sbjct: 35 TFSA*NAAEIFFQLLVATSVGMITHELLEPMKYAQK*NGLTQKLKPSKYAVMK*TKHPYS 214
Query: 560 WPRQTANWRMWLKDFLDAIA* 498
W R+TANWRMWL DF DAIA*
Sbjct: 215 WLRETANWRMWLYDFRDAIA* 277
Score = 110 bits (234), Expect = 4e-023
Identities = 48/72 (66%), Positives = 54/72 (75%)
Frame = -1 / +1
Query: 714 SFLPGPYGDEHRYPDPEAVCANEIRPEVERADPEVEAVQVRGDEVNQASVELAQTDGELE 535
+ LP P GDE RY P V +EI PEVER DPEVEA+QVRG EVNQASV LAQ +GELE
Sbjct: 61 NLLPAPCGDERRYDHP*TVGTDEICPEVERTDPEVEAIQVRGHEVNQASV*LAQRNGELE 240
Query: 534 NVAEGLPGCNSV 499
+VA LPGCN +
Sbjct: 241 DVAVRLPGCNRI 276
Score = 27.2 bits (53), Expect(2) = 2e-044
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1 / -1
Query: 433 TATVTVEGITAVLEGPASLLAV 498
T + +E IT +GPASLLAV
Sbjct: 447 TVVLALEVITVGFKGPASLLAV 382
>gb|CF772769.1|CF772769 DSBF1_39_B11.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_39_B11_A010 3', mRNA sequence
Length = 403
Score = 153 bits (329), Expect(2) = 1e-039
Identities = 57/59 (96%), Positives = 58/59 (98%)
Frame = +1 / +3
Query: 568 GCLVYFITAYLDGFNFWVGPFYFWAYFIGANSFWIWIPMLIAIRSWKKTCAAFQAEKVK 744
GCLVYFITAYLDGFNFWVGPFYFWAYFIGANSFWIWIPMLIAIRSWK+ CAAFQAEKVK
Sbjct: 3 GCLVYFITAYLDGFNFWVGPFYFWAYFIGANSFWIWIPMLIAIRSWKEICAAFQAEKVK 179
Score = 127 bits (271), Expect(2) = 4e-029
Identities = 54/63 (85%), Positives = 59/63 (93%)
Frame = -2 / -1
Query: 755 YLVFFTFSA*NAAQVFFQDLMAMSIGIQIQKLFAPMKYAQK*NGPTQKLKPSKYAVMK*T 576
+ + FTFSA*NAA + FQDLMAMSIGIQIQKLFAPMKYAQK*NGPTQKLKPSKYAV+K*T
Sbjct: 190 FYLVFTFSA*NAAHISFQDLMAMSIGIQIQKLFAPMKYAQK*NGPTQKLKPSKYAVIK*T 11
Query: 575 RHP 567
+HP
Sbjct: 10 KHP 2
Score = 31.8 bits (63), Expect(2) = 1e-039
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +2 / +1
Query: 803 LKFLCWLVLETA*CTLCSN 859
LKFLCW CTLCSN
Sbjct: 253 LKFLCWYWKMETACTLCSN 309
Score = 22.6 bits (43), Expect(2) = 4e-029
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3 / -2
Query: 766 KTAFIWSS 743
KTAFIWSS
Sbjct: 198 KTAFIWSS 175
>gb|CW184699.1|CW184699 104_602_11165672_116_36692_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11165672, DNA
sequence
Length = 574
Score = 74.8 bits (157), Expect(3) = 2e-033
Identities = 26/38 (68%), Positives = 30/38 (78%)
Frame = +1 / +1
Query: 274 LLMCWWAFTGLTHIMIEGPFVFTPDFFKKENPNFFDEV 387
LL+ WW FT L HI+ E PF+FTPDF KENPNFFDE+
Sbjct: 1 LLLGWWVFTALAHIVFEPPFLFTPDFLSKENPNFFDEM 114
Score = 55.6 bits (115), Expect(3) = 2e-033
Identities = 25/46 (54%), Positives = 31/46 (67%)
Frame = +1 / +2
Query: 361 ENPNFFDEVWKEYSKGDSRYVARDTATVTVEGITAVLEGPASLLAV 498
+ N D KEYSKGDSRY +R+T + +E IT +GPASLLAV
Sbjct: 257 DRANANDVSVKEYSKGDSRYASRNTVVLALEVITVGFKGPASLLAV 394
Score = 54.7 bits (113), Expect(3) = 2e-033
Identities = 22/25 (88%), Positives = 23/25 (92%)
Frame = +1 / +2
Query: 499 YAIASRKSFSHILQFAVCLGQLYGC 573
YAIASRKS+SHILQFAV L QLYGC
Sbjct: 500 YAIASRKSYSHILQFAVSLSQLYGC 574
>gb|CW478863.1|CW478863 fsbb001f236p10k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f236p10, DNA
sequence
Length = 607
Score = 90.4 bits (191), Expect(2) = 1e-032
Identities = 33/45 (73%), Positives = 37/45 (82%)
Frame = +1 / +2
Query: 253 RLSKTDRLLMCWWAFTGLTHIMIEGPFVFTPDFFKKENPNFFDEV 387
RLSKTDRLL+ WW FT L HI+ E PF+FTPDF KENPNFFDE+
Sbjct: 377 RLSKTDRLLLGWWVFTALAHIVFEPPFLFTPDFLSKENPNFFDEM 511
Score = 73.5 bits (154), Expect(2) = 1e-032
Identities = 27/44 (61%), Positives = 35/44 (79%)
Frame = +1 / +2
Query: 112 GHPYAPAELDLPGFVPLKLSQVEILVSYLGASVFVFLAVWLVSG 243
GHPY+PAEL+LPGFVP +LSQ +IL ++G +VF L WL+SG
Sbjct: 98 GHPYSPAELELPGFVPQRLSQGQILAPFVGTAVFSVLGAWLISG 229
>gb|CW488801.1|CW488801 fsbb001f265g08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f265g08, DNA
sequence
Length = 672
Score = 87.7 bits (185), Expect(2) = 3e-032
Identities = 31/45 (68%), Positives = 38/45 (84%)
Frame = +1 / +3
Query: 253 RLSKTDRLLMCWWAFTGLTHIMIEGPFVFTPDFFKKENPNFFDEV 387
RLS+TDRLLM WW F LT+I++E PF+FTPDF KENPN+FDE+
Sbjct: 474 RLSRTDRLLMGWWLFAALTYIVLESPFLFTPDFLSKENPNYFDEL 608
Score = 72.5 bits (152), Expect(2) = 3e-032
Identities = 27/44 (61%), Positives = 35/44 (79%)
Frame = +1 / +1
Query: 112 GHPYAPAELDLPGFVPLKLSQVEILVSYLGASVFVFLAVWLVSG 243
GHPY+PAEL+LPGFVP +LSQ +IL ++G +VF L WL+SG
Sbjct: 247 GHPYSPAELELPGFVPQRLSQGQILAPFVGNAVFSVLGAWLISG 378
>gb|CW237987.1|CW237987 104_694_11216476_148_37490_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11216476, DNA
sequence
Length = 520
Score = 79.4 bits (167), Expect(2) = 5e-026
Identities = 32/44 (72%), Positives = 37/44 (84%)
Frame = +1 / +1
Query: 112 GHPYAPAELDLPGFVPLKLSQVEILVSYLGASVFVFLAVWLVSG 243
GH YAPA+L LPGFVPL+LSQ +IL YLG +VFV LAVWL+SG
Sbjct: 7 GHTYAPADLHLPGFVPLQLSQGQILAPYLGTAVFVVLAVWLLSG 138
Score = 62.0 bits (129), Expect(2) = 5e-026
Identities = 22/25 (88%), Positives = 23/25 (92%)
Frame = +1 / +1
Query: 271 RLLMCWWAFTGLTHIMIEGPFVFTP 345
RLLMCWWAFTGLTHI+IEG FVF P
Sbjct: 445 RLLMCWWAFTGLTHIVIEGAFVFNP 519
>gb|CW237986.1|CW237986 104_694_11216476_116_37489_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11216476, DNA
sequence
Length = 702
Score = 85.8 bits (181), Expect(2) = 1e-025
Identities = 37/39 (94%), Positives = 38/39 (97%)
Frame = +1 / -2
Query: 391 KEYSKGDSRYVARDTATVTVEGITAVLEGPASLLAVYAI 507
KEYSKGDSRYVARD ATVTVEGITAVLEGPASLLAVYA+
Sbjct: 170 KEYSKGDSRYVARDPATVTVEGITAVLEGPASLLAVYAL 54
Score = 76.2 bits (160), Expect(3) = 5e-024
Identities = 34/35 (97%), Positives = 34/35 (97%)
Frame = -2 / +1
Query: 497 TASSDAGPSNTAVIPSTVTVAVSLATYLESPLLYS 393
TASSDAGPSNTAVIPSTVTVA SLATYLESPLLYS
Sbjct: 64 TASSDAGPSNTAVIPSTVTVAGSLATYLESPLLYS 168
Score = 52.4 bits (108), Expect(2) = 1e-025
Identities = 24/40 (60%), Positives = 27/40 (67%)
Frame = +3 / -2
Query: 270 PSAHVLVGIYRVDPHNDRGALCLHS*FLQEGEPQFL**SL 389
PSAHVLVG++R PH RG L L LQ+GEP L *SL
Sbjct: 398 PSAHVLVGVHRPHPHCHRGGLRLQPRILQQGEPHLLR*SL 279
Score = 51.0 bits (105), Expect(3) = 5e-024
Identities = 24/40 (60%), Positives = 28/40 (70%)
Frame = -3 / +1
Query: 388 KLHQRNWGSPS*RNQE*RQRAPRSLCGSTL*MPTST*ADG 269
+LH+ WGSP *R + *R+R PR CG * PTST*ADG
Sbjct: 280 RLHRSRWGSPC*RIRG*RRRPPR*QCG*GR*TPTST*ADG 399
Score = 23.1 bits (44), Expect(3) = 5e-024
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2 / +1
Query: 269 SVLDNLTHLPETSQT 225
SVLDN HLP Q+
Sbjct: 400 SVLDNPRHLPANQQS 444
>gb|CW463672.1|CW463672 fsbb001f212h05f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f212h05, DNA
sequence
Length = 719
Score = 73.5 bits (154), Expect(2) = 2e-025
Identities = 27/44 (61%), Positives = 35/44 (79%)
Frame = +1 / +2
Query: 112 GHPYAPAELDLPGFVPLKLSQVEILVSYLGASVFVFLAVWLVSG 243
GHPY+PAEL+LPGFVP +LSQ +IL ++G +VF L WL+SG
Sbjct: 335 GHPYSPAELELPGFVPQRLSQGQILAPFVGTAVFSVLGAWLISG 466
Score = 66.1 bits (138), Expect(2) = 2e-025
Identities = 24/33 (72%), Positives = 27/33 (81%)
Frame = +1 / +2
Query: 253 RLSKTDRLLMCWWAFTGLTHIMIEGPFVFTPDF 351
RLSKTDRLL+ WW FT L HI+ E PF+FTPDF
Sbjct: 614 RLSKTDRLLLGWWVFTALAHIVFEPPFLFTPDF 712
>gb|CW086749.1|CW086749 104_430_10947182_114_33015_049 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10947182, DNA
sequence
Length = 728
Score = 105 bits (225), Expect = 7e-022
Identities = 45/62 (72%), Positives = 47/62 (75%)
Frame = -2 / +1
Query: 245 LPETSQTARKTKTEAPR*DTRISTWDSFSGTKPGRSSSAGA*GCPIDVXXXXXXXXXXXA 66
+PETSQTAR+TK EAPR*DTRIS WDSFSGTKPGRSSSAGA*GCPID
Sbjct: 241 VPETSQTARRTKREAPR*DTRISAWDSFSGTKPGRSSSAGA*GCPIDAAAAVACSALRQP 420
Query: 65 PI 60
PI
Sbjct: 421 PI 426
Score = 105 bits (223), Expect = 1e-021
Identities = 45/62 (72%), Positives = 47/62 (75%)
Frame = +1 / -1
Query: 58 QIGXXXXXXXXXXXXTSMGHPYAPAELDLPGFVPLKLSQVEILVSYLGASVFVFLAVWLV 237
+IG SMGHPYAPAELDLPGFVPLKLSQ EILVSYLGAS+FV LAVWLV
Sbjct: 428 RIGG*RKAEQATAAAASMGHPYAPAELDLPGFVPLKLSQAEILVSYLGASLFVLLAVWLV 249
Query: 238 SG 243
SG
Sbjct: 248 SG 243
>gb|CW401162.1|CW401162 fsbb001f091n08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f091n08, DNA
sequence
Length = 754
Score = 105 bits (225), Expect = 7e-022
Identities = 45/62 (72%), Positives = 47/62 (75%)
Frame = -2 / +2
Query: 245 LPETSQTARKTKTEAPR*DTRISTWDSFSGTKPGRSSSAGA*GCPIDVXXXXXXXXXXXA 66
+PETSQTAR+TK EAPR*DTRIS WDSFSGTKPGRSSSAGA*GCPID
Sbjct: 230 VPETSQTARRTKREAPR*DTRISAWDSFSGTKPGRSSSAGA*GCPIDAAAAVACSALRQP 409
Query: 65 PI 60
PI
Sbjct: 410 PI 415
Score = 105 bits (223), Expect = 1e-021
Identities = 45/62 (72%), Positives = 47/62 (75%)
Frame = +1 / -2
Query: 58 QIGXXXXXXXXXXXXTSMGHPYAPAELDLPGFVPLKLSQVEILVSYLGASVFVFLAVWLV 237
+IG SMGHPYAPAELDLPGFVPLKLSQ EILVSYLGAS+FV LAVWLV
Sbjct: 417 RIGG*RKAEQATAAAASMGHPYAPAELDLPGFVPLKLSQAEILVSYLGASLFVLLAVWLV 238
Query: 238 SG 243
SG
Sbjct: 237 SG 232
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 989,025,128
Number of Sequences: 832831
Number of extensions: 13669663
Number of successful extensions: 109683
Number of sequences better than 1.0e-020: 24
length of database: 163,786,556
effective HSP length: 55
effective length of database: 117,980,851
effective search space used: 28787327644
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)