TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8028975.2.1
(595 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM331709.1|BM331709 PIC1_59_F10.g1_A002 Pathogen-infecte... 99 2e-049
gb|BM328210.1|BM328210 PIC1_22_D06.g1_A002 Pathogen-infecte... 99 2e-049
gb|CB924981.1|CB924981 ABA1_29_B09.b1_A012 Abscisic acid-tr... 99 6e-049
gb|CD210978.1|CD210978 HS1_58_H07.b1_A012 Heat-shocked seed... 99 8e-042
gb|CF428452.1|CF428452 PH1_15_C10.b1_A002 Phosphorous-defic... 65 8e-036
gb|BM329289.1|BM329289 PIC1_35_G09.g1_A002 Pathogen-infecte... 65 1e-030
gb|BM328262.1|BM328262 PIC1_23_A04.g1_A002 Pathogen-infecte... 65 4e-028
gb|BM329205.1|BM329205 PIC1_34_G04.g1_A002 Pathogen-infecte... 65 7e-028
gb|CF431305.1|CF431305 NIT1_5_F06.b1_A002 Nitrogen-deficien... 65 8e-028
gb|AI724629.1|AI724629 RHIZ1_11_A04.y1_A001 Rhizome1 (RHIZ1... 62 3e-024
>gb|BM331709.1|BM331709 PIC1_59_F10.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 622
Score = 99.1 bits (210), Expect(3) = 6e-042
Identities = 39/39 (100%), Positives = 39/39 (100%)
Frame = +2 / +1
Query: 2 QYVGIEVWQVKAGSVFDNILICDDPDYARHVVDETFAAN 118
QYVGIEVWQVKAGSVFDNILICDDPDYARHVVDETFAAN
Sbjct: 37 QYVGIEVWQVKAGSVFDNILICDDPDYARHVVDETFAAN 153
Score = 92.3 bits (195), Expect(4) = 5e-036
Identities = 35/38 (92%), Positives = 36/38 (94%)
Frame = +1 / +3
Query: 1 AVCGD*SMAGQSWFSF*QHFDLR*PRLCKTCCR*NFCC 114
AVCGD*S+AGQSWF F*QHFDLR* RLCKTCCR*NFCC
Sbjct: 36 AVCGD*SLAGQSWFGF*QHFDLR*SRLCKTCCR*NFCC 149
Score = 91.3 bits (193), Expect(5) = 2e-049
Identities = 36/39 (92%), Positives = 37/39 (94%)
Frame = -1 / -2
Query: 118 ICSKSFIYNMSCIVWVIANQNVVKN*TSFDLPYFNPHIL 2
ICSKSFIYNMSCIVW+IANQNVVKN TSFDLP FNPHIL
Sbjct: 153 ICSKSFIYNMSCIVWIIANQNVVKNRTSFDLPDFNPHIL 37
Score = 79.9 bits (168), Expect(5) = 1e-035
Identities = 32/35 (91%), Positives = 32/35 (91%)
Frame = -3 / -1
Query: 107 KFHLQHVLHSLGHRKSKCCQKLNQL*PAILQSPHT 3
KFHLQHVLHSL HRKSKCCQK NQL*PA LQSPHT
Sbjct: 142 KFHLQHVLHSLDHRKSKCCQKPNQL*PARLQSPHT 38
Score = 75.3 bits (158), Expect(3) = 3e-023
Identities = 31/32 (96%), Positives = 31/32 (96%)
Frame = -2 / -3
Query: 96 TTCLA*SGSSQIKMLSKTEPALTCHTSIPTYC 1
TTCLA*SGSSQIKMLSKTEPALTC TSIPTYC
Sbjct: 131 TTCLA*SGSSQIKMLSKTEPALTCQTSIPTYC 36
Score = 64.8 bits (135), Expect(5) = 2e-049
Identities = 24/30 (80%), Positives = 25/30 (83%)
Frame = -3 / -1
Query: 320 KNTGSIARHGSRSAYDAYIYPCIGPCRGPY 231
+NT SIARHGSRS Y AYIYPC GPC GPY
Sbjct: 355 QNT*SIARHGSRSVYGAYIYPCNGPCHGPY 266
Score = 57.0 bits (118), Expect(3) = 6e-042
Identities = 28/60 (46%), Positives = 35/60 (58%)
Frame = +3 / +2
Query: 231 IGTAAGTDTRIDISVIGTTTTMTSYRSCILLKSARYWMSVYGERTCKTCMLYSRMKLNL* 410
IGT AGT T IDIS I TTTTMTSYRSC+L + + G C + + R ++*
Sbjct: 266 IGTVAGTVTGIDISAIDTTTTMTSYRSCVLKSARYWLSMELGLDDCVNKVYHFRASTDV* 445
Score = 54.2 bits (112), Expect(3) = 6e-042
Identities = 21/25 (84%), Positives = 21/25 (84%)
Frame = +3 / +3
Query: 411 FWRWVEIGHRVCN*ISTLRCNMSCS 485
FWRWVEI HR CN*IS LR NMSCS
Sbjct: 537 FWRWVEIDHRGCN*ISPLRGNMSCS 611
Score = 54.2 bits (112), Expect(5) = 2e-049
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = -2 / -2
Query: 486 YYSSYCIATWKFSYRRDGQSLPIAK 412
YYSSYC+A KFSY RDGQSLPIAK
Sbjct: 612 YYSSYCLAMGKFSYSRDGQSLPIAK 538
Score = 52.4 bits (108), Expect(5) = 1e-035
Identities = 22/25 (88%), Positives = 22/25 (88%)
Frame = -3 / -3
Query: 485 TTAHIASQRGNLVTDAMANLYPSPK 411
TTAHIASQ GNLVT AM NLYPSPK
Sbjct: 611 TTAHIASQWGNLVTAAMVNLYPSPK 537
Score = 49.6 bits (102), Expect(4) = 5e-036
Identities = 21/25 (84%), Positives = 23/25 (92%)
Frame = +1 / +1
Query: 412 FGDG*RLAIASVTKFPRCDAI*AVV 486
FGDG*RL IA+VTKFP C+AI*AVV
Sbjct: 538 FGDG*RLTIAAVTKFPHCEAI*AVV 612
Score = 46.0 bits (94), Expect(3) = 3e-023
Identities = 20/25 (80%), Positives = 21/25 (84%)
Frame = -1 / -1
Query: 487 VLQLILHRNVEI*LQTRWPISTHRQ 413
+LQLIL RN EI*LQ RW ISTHRQ
Sbjct: 613 ILQLILPRNGEI*LQPRWSISTHRQ 539
Score = 39.1 bits (79), Expect(4) = 5e-036
Identities = 14/17 (82%), Positives = 17/17 (100%)
Frame = +3 / +2
Query: 363 TCKTCMLYSRMKLNL*F 413
TC+TCMLY+R+KLNL*F
Sbjct: 488 TCRTCMLYTRIKLNL*F 538
Score = 38.6 bits (78), Expect(5) = 2e-049
Identities = 16/22 (72%), Positives = 16/22 (72%)
Frame = -2 / -3
Query: 423 PIAKITGSASSVSTTYKFCTCA 358
P KIT SA V TTYKFCTCA
Sbjct: 548 PSPKITNSA*FVCTTYKFCTCA 483
Score = 37.7 bits (76), Expect(5) = 1e-035
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = -1 / -2
Query: 415 QNHRFSFIREYNIQVLHV 362
+NH+FS IR YNIQVLHV
Sbjct: 540 KNHKFSLIRVYNIQVLHV 487
Score = 28.1 bits (55), Expect(4) = 5e-036
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3 / +2
Query: 285 TTTMTSYRSCILLKSARYWMSV 350
TTT + +LKSARYW+S+
Sbjct: 317 TTTTMTSYRSCVLKSARYWLSM 382
Score = 27.2 bits (53), Expect(5) = 1e-035
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -1 / -2
Query: 277 MTLISILVSVPAAVPI 230
M LISI V+VPA VPI
Sbjct: 312 MALISIPVTVPATVPI 265
Score = 27.2 bits (53), Expect(3) = 3e-023
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -3 / -1
Query: 413 KSQVQLHP*VQHTSFAR 363
KSQ+QL VQHTS AR
Sbjct: 538 KSQIQLDSCVQHTSSAR 488
Score = 26.3 bits (51), Expect(5) = 1e-035
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = -2 / -3
Query: 318 EYRIYSSSW*S*C 280
++ IYSSSW*S*C
Sbjct: 353 KHMIYSSSW*S*C 315
Score = 22.1 bits (42), Expect(5) = 2e-049
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -3 / -1
Query: 347 RHPISCRFQ 321
R PI+CRFQ
Sbjct: 379 RQPITCRFQ 353
>gb|BM328210.1|BM328210 PIC1_22_D06.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 629
Score = 99.1 bits (210), Expect(3) = 3e-042
Identities = 39/39 (100%), Positives = 39/39 (100%)
Frame = +2 / +3
Query: 2 QYVGIEVWQVKAGSVFDNILICDDPDYARHVVDETFAAN 118
QYVGIEVWQVKAGSVFDNILICDDPDYARHVVDETFAAN
Sbjct: 3 QYVGIEVWQVKAGSVFDNILICDDPDYARHVVDETFAAN 119
Score = 92.3 bits (195), Expect(4) = 5e-036
Identities = 35/38 (92%), Positives = 36/38 (94%)
Frame = +1 / +2
Query: 1 AVCGD*SMAGQSWFSF*QHFDLR*PRLCKTCCR*NFCC 114
AVCGD*S+AGQSWF F*QHFDLR* RLCKTCCR*NFCC
Sbjct: 2 AVCGD*SLAGQSWFGF*QHFDLR*SRLCKTCCR*NFCC 115
Score = 91.3 bits (193), Expect(5) = 2e-049
Identities = 36/39 (92%), Positives = 37/39 (94%)
Frame = -1 / -1
Query: 118 ICSKSFIYNMSCIVWVIANQNVVKN*TSFDLPYFNPHIL 2
ICSKSFIYNMSCIVW+IANQNVVKN TSFDLP FNPHIL
Sbjct: 119 ICSKSFIYNMSCIVWIIANQNVVKNRTSFDLPDFNPHIL 3
Score = 79.9 bits (168), Expect(5) = 1e-035
Identities = 32/35 (91%), Positives = 32/35 (91%)
Frame = -3 / -3
Query: 107 KFHLQHVLHSLGHRKSKCCQKLNQL*PAILQSPHT 3
KFHLQHVLHSL HRKSKCCQK NQL*PA LQSPHT
Sbjct: 108 KFHLQHVLHSLDHRKSKCCQKPNQL*PARLQSPHT 4
Score = 75.3 bits (158), Expect(3) = 3e-023
Identities = 31/32 (96%), Positives = 31/32 (96%)
Frame = -2 / -2
Query: 96 TTCLA*SGSSQIKMLSKTEPALTCHTSIPTYC 1
TTCLA*SGSSQIKMLSKTEPALTC TSIPTYC
Sbjct: 97 TTCLA*SGSSQIKMLSKTEPALTCQTSIPTYC 2
Score = 64.8 bits (135), Expect(5) = 2e-049
Identities = 24/30 (80%), Positives = 25/30 (83%)
Frame = -3 / -3
Query: 320 KNTGSIARHGSRSAYDAYIYPCIGPCRGPY 231
+NT SIARHGSRS Y AYIYPC GPC GPY
Sbjct: 321 QNT*SIARHGSRSVYGAYIYPCNGPCHGPY 232
Score = 57.0 bits (118), Expect(3) = 3e-042
Identities = 28/60 (46%), Positives = 35/60 (58%)
Frame = +3 / +1
Query: 231 IGTAAGTDTRIDISVIGTTTTMTSYRSCILLKSARYWMSVYGERTCKTCMLYSRMKLNL* 410
IGT AGT T IDIS I TTTTMTSYRSC+L + + G C + + R ++*
Sbjct: 232 IGTVAGTVTGIDISAIDTTTTMTSYRSCVLKSARYWLSMELGLDDCVNKVYHFRASTDV* 411
Score = 55.1 bits (114), Expect(3) = 3e-042
Identities = 22/35 (62%), Positives = 24/35 (68%)
Frame = +3 / +2
Query: 411 FWRWVEIGHRVCN*ISTLRCNMSCSTVLALLFTVC 515
FWRWVEI HR CN*IS LR NMSCS + + C
Sbjct: 503 FWRWVEIDHRGCN*ISPLRGNMSCSILALSFTSKC 607
Score = 54.2 bits (112), Expect(5) = 2e-049
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = -2 / -1
Query: 486 YYSSYCIATWKFSYRRDGQSLPIAK 412
YYSSYC+A KFSY RDGQSLPIAK
Sbjct: 578 YYSSYCLAMGKFSYSRDGQSLPIAK 504
Score = 52.4 bits (108), Expect(5) = 1e-035
Identities = 22/25 (88%), Positives = 22/25 (88%)
Frame = -3 / -2
Query: 485 TTAHIASQRGNLVTDAMANLYPSPK 411
TTAHIASQ GNLVT AM NLYPSPK
Sbjct: 577 TTAHIASQWGNLVTAAMVNLYPSPK 503
Score = 49.6 bits (102), Expect(4) = 5e-036
Identities = 21/25 (84%), Positives = 23/25 (92%)
Frame = +1 / +3
Query: 412 FGDG*RLAIASVTKFPRCDAI*AVV 486
FGDG*RL IA+VTKFP C+AI*AVV
Sbjct: 504 FGDG*RLTIAAVTKFPHCEAI*AVV 578
Score = 46.0 bits (94), Expect(3) = 3e-023
Identities = 20/25 (80%), Positives = 21/25 (84%)
Frame = -1 / -3
Query: 487 VLQLILHRNVEI*LQTRWPISTHRQ 413
+LQLIL RN EI*LQ RW ISTHRQ
Sbjct: 579 ILQLILPRNGEI*LQPRWSISTHRQ 505
Score = 39.1 bits (79), Expect(4) = 5e-036
Identities = 14/17 (82%), Positives = 17/17 (100%)
Frame = +3 / +1
Query: 363 TCKTCMLYSRMKLNL*F 413
TC+TCMLY+R+KLNL*F
Sbjct: 454 TCRTCMLYTRIKLNL*F 504
Score = 38.6 bits (78), Expect(5) = 2e-049
Identities = 16/22 (72%), Positives = 16/22 (72%)
Frame = -2 / -2
Query: 423 PIAKITGSASSVSTTYKFCTCA 358
P KIT SA V TTYKFCTCA
Sbjct: 514 PSPKITNSA*FVCTTYKFCTCA 449
Score = 37.7 bits (76), Expect(5) = 1e-035
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = -1 / -1
Query: 415 QNHRFSFIREYNIQVLHV 362
+NH+FS IR YNIQVLHV
Sbjct: 506 KNHKFSLIRVYNIQVLHV 453
Score = 28.1 bits (55), Expect(4) = 5e-036
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3 / +1
Query: 285 TTTMTSYRSCILLKSARYWMSV 350
TTT + +LKSARYW+S+
Sbjct: 283 TTTTMTSYRSCVLKSARYWLSM 348
Score = 27.2 bits (53), Expect(5) = 1e-035
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -1 / -1
Query: 277 MTLISILVSVPAAVPI 230
M LISI V+VPA VPI
Sbjct: 278 MALISIPVTVPATVPI 231
Score = 27.2 bits (53), Expect(3) = 3e-023
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -3 / -3
Query: 413 KSQVQLHP*VQHTSFAR 363
KSQ+QL VQHTS AR
Sbjct: 504 KSQIQLDSCVQHTSSAR 454
Score = 26.3 bits (51), Expect(5) = 1e-035
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = -2 / -2
Query: 318 EYRIYSSSW*S*C 280
++ IYSSSW*S*C
Sbjct: 319 KHMIYSSSW*S*C 281
Score = 22.1 bits (42), Expect(5) = 2e-049
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -3 / -3
Query: 347 RHPISCRFQ 321
R PI+CRFQ
Sbjct: 345 RQPITCRFQ 319
>gb|CB924981.1|CB924981 ABA1_29_B09.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_29_B09_A012 3', mRNA sequence
Length = 663
Score = 99.1 bits (210), Expect(3) = 3e-042
Identities = 39/39 (100%), Positives = 39/39 (100%)
Frame = +2 / +1
Query: 2 QYVGIEVWQVKAGSVFDNILICDDPDYARHVVDETFAAN 118
QYVGIEVWQVKAGSVFDNILICDDPDYARHVVDETFAAN
Sbjct: 79 QYVGIEVWQVKAGSVFDNILICDDPDYARHVVDETFAAN 195
Score = 92.3 bits (195), Expect(4) = 6e-036
Identities = 35/38 (92%), Positives = 36/38 (94%)
Frame = +1 / +3
Query: 1 AVCGD*SMAGQSWFSF*QHFDLR*PRLCKTCCR*NFCC 114
AVCGD*S+AGQSWF F*QHFDLR* RLCKTCCR*NFCC
Sbjct: 78 AVCGD*SLAGQSWFGF*QHFDLR*SRLCKTCCR*NFCC 191
Score = 91.3 bits (193), Expect(5) = 6e-049
Identities = 36/39 (92%), Positives = 37/39 (94%)
Frame = -1 / -1
Query: 118 ICSKSFIYNMSCIVWVIANQNVVKN*TSFDLPYFNPHIL 2
ICSKSFIYNMSCIVW+IANQNVVKN TSFDLP FNPHIL
Sbjct: 195 ICSKSFIYNMSCIVWIIANQNVVKNRTSFDLPDFNPHIL 79
Score = 79.9 bits (168), Expect(5) = 4e-035
Identities = 32/35 (91%), Positives = 32/35 (91%)
Frame = -3 / -3
Query: 107 KFHLQHVLHSLGHRKSKCCQKLNQL*PAILQSPHT 3
KFHLQHVLHSL HRKSKCCQK NQL*PA LQSPHT
Sbjct: 184 KFHLQHVLHSLDHRKSKCCQKPNQL*PARLQSPHT 80
Score = 75.3 bits (158), Expect(3) = 9e-023
Identities = 31/32 (96%), Positives = 31/32 (96%)
Frame = -2 / -2
Query: 96 TTCLA*SGSSQIKMLSKTEPALTCHTSIPTYC 1
TTCLA*SGSSQIKMLSKTEPALTC TSIPTYC
Sbjct: 173 TTCLA*SGSSQIKMLSKTEPALTCQTSIPTYC 78
Score = 64.8 bits (135), Expect(5) = 6e-049
Identities = 24/30 (80%), Positives = 25/30 (83%)
Frame = -3 / -3
Query: 320 KNTGSIARHGSRSAYDAYIYPCIGPCRGPY 231
+NT SIARHGSRS Y AYIYPC GPC GPY
Sbjct: 397 QNT*SIARHGSRSVYGAYIYPCNGPCHGPY 308
Score = 57.0 bits (118), Expect(3) = 3e-042
Identities = 28/60 (46%), Positives = 35/60 (58%)
Frame = +3 / +2
Query: 231 IGTAAGTDTRIDISVIGTTTTMTSYRSCILLKSARYWMSVYGERTCKTCMLYSRMKLNL* 410
IGT AGT T IDIS I TTTTMTSYRSC+L + + G C + + R ++*
Sbjct: 308 IGTVAGTVTGIDISAIDTTTTMTSYRSCVLKSARYWLSMELGLDDCVNKVYHFRASTDV* 487
Score = 55.1 bits (114), Expect(3) = 3e-042
Identities = 21/27 (77%), Positives = 23/27 (85%)
Frame = +3 / +3
Query: 411 FWRWVEIGHRVCN*ISTLRCNMSCSTV 491
FWRWVEI HR CN*IS LR NMSCS++
Sbjct: 579 FWRWVEIDHRGCN*ISPLRGNMSCSSL 659
Score = 52.4 bits (108), Expect(5) = 6e-049
Identities = 22/25 (88%), Positives = 22/25 (88%)
Frame = -3 / -2
Query: 485 TTAHIASQRGNLVTDAMANLYPSPK 411
TTAHIASQ GNLVT AM NLYPSPK
Sbjct: 653 TTAHIASQWGNLVTAAMVNLYPSPK 579
Score = 51.0 bits (105), Expect(5) = 4e-035
Identities = 20/24 (83%), Positives = 21/24 (87%)
Frame = -2 / -1
Query: 483 YSSYCIATWKFSYRRDGQSLPIAK 412
YSSYC+A KFSY RDGQSLPIAK
Sbjct: 651 YSSYCLAMGKFSYSRDGQSLPIAK 580
Score = 49.6 bits (102), Expect(4) = 6e-036
Identities = 21/25 (84%), Positives = 23/25 (92%)
Frame = +1 / +1
Query: 412 FGDG*RLAIASVTKFPRCDAI*AVV 486
FGDG*RL IA+VTKFP C+AI*AVV
Sbjct: 580 FGDG*RLTIAAVTKFPHCEAI*AVV 654
Score = 44.6 bits (91), Expect(3) = 9e-023
Identities = 20/24 (83%), Positives = 20/24 (83%)
Frame = -1 / -3
Query: 484 LQLILHRNVEI*LQTRWPISTHRQ 413
LQLIL RN EI*LQ RW ISTHRQ
Sbjct: 652 LQLILPRNGEI*LQPRWSISTHRQ 581
Score = 39.1 bits (79), Expect(4) = 6e-036
Identities = 14/17 (82%), Positives = 17/17 (100%)
Frame = +3 / +2
Query: 363 TCKTCMLYSRMKLNL*F 413
TC+TCMLY+R+KLNL*F
Sbjct: 530 TCRTCMLYTRIKLNL*F 580
Score = 38.6 bits (78), Expect(5) = 6e-049
Identities = 16/22 (72%), Positives = 16/22 (72%)
Frame = -2 / -2
Query: 423 PIAKITGSASSVSTTYKFCTCA 358
P KIT SA V TTYKFCTCA
Sbjct: 590 PSPKITNSA*FVCTTYKFCTCA 525
Score = 37.7 bits (76), Expect(5) = 4e-035
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = -1 / -1
Query: 415 QNHRFSFIREYNIQVLHV 362
+NH+FS IR YNIQVLHV
Sbjct: 582 KNHKFSLIRVYNIQVLHV 529
Score = 28.1 bits (55), Expect(4) = 6e-036
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3 / +2
Query: 285 TTTMTSYRSCILLKSARYWMSV 350
TTT + +LKSARYW+S+
Sbjct: 359 TTTTMTSYRSCVLKSARYWLSM 424
Score = 27.2 bits (53), Expect(5) = 4e-035
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -1 / -1
Query: 277 MTLISILVSVPAAVPI 230
M LISI V+VPA VPI
Sbjct: 354 MALISIPVTVPATVPI 307
Score = 27.2 bits (53), Expect(3) = 9e-023
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -3 / -3
Query: 413 KSQVQLHP*VQHTSFAR 363
KSQ+QL VQHTS AR
Sbjct: 580 KSQIQLDSCVQHTSSAR 530
Score = 26.3 bits (51), Expect(5) = 4e-035
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = -2 / -2
Query: 318 EYRIYSSSW*S*C 280
++ IYSSSW*S*C
Sbjct: 395 KHMIYSSSW*S*C 357
Score = 22.1 bits (42), Expect(5) = 6e-049
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -3 / -3
Query: 347 RHPISCRFQ 321
R PI+CRFQ
Sbjct: 421 RQPITCRFQ 395
>gb|CD210978.1|CD210978 HS1_58_H07.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_58_H07_A012 3', mRNA sequence
Length = 737
Score = 99.1 bits (210), Expect(3) = 1e-034
Identities = 39/39 (100%), Positives = 39/39 (100%)
Frame = +2 / +2
Query: 2 QYVGIEVWQVKAGSVFDNILICDDPDYARHVVDETFAAN 118
QYVGIEVWQVKAGSVFDNILICDDPDYARHVVDETFAAN
Sbjct: 203 QYVGIEVWQVKAGSVFDNILICDDPDYARHVVDETFAAN 319
Score = 92.3 bits (195), Expect(4) = 6e-028
Identities = 35/38 (92%), Positives = 36/38 (94%)
Frame = +1 / +1
Query: 1 AVCGD*SMAGQSWFSF*QHFDLR*PRLCKTCCR*NFCC 114
AVCGD*S+AGQSWF F*QHFDLR* RLCKTCCR*NFCC
Sbjct: 202 AVCGD*SLAGQSWFGF*QHFDLR*SRLCKTCCR*NFCC 315
Score = 91.3 bits (193), Expect(5) = 8e-042
Identities = 36/39 (92%), Positives = 37/39 (94%)
Frame = -1 / -2
Query: 118 ICSKSFIYNMSCIVWVIANQNVVKN*TSFDLPYFNPHIL 2
ICSKSFIYNMSCIVW+IANQNVVKN TSFDLP FNPHIL
Sbjct: 319 ICSKSFIYNMSCIVWIIANQNVVKNRTSFDLPDFNPHIL 203
Score = 79.9 bits (168), Expect(5) = 2e-027
Identities = 32/35 (91%), Positives = 32/35 (91%)
Frame = -3 / -1
Query: 107 KFHLQHVLHSLGHRKSKCCQKLNQL*PAILQSPHT 3
KFHLQHVLHSL HRKSKCCQK NQL*PA LQSPHT
Sbjct: 308 KFHLQHVLHSLDHRKSKCCQKPNQL*PARLQSPHT 204
Score = 64.8 bits (135), Expect(5) = 8e-042
Identities = 24/30 (80%), Positives = 25/30 (83%)
Frame = -3 / -1
Query: 320 KNTGSIARHGSRSAYDAYIYPCIGPCRGPY 231
+NT SIARHGSRS Y AYIYPC GPC GPY
Sbjct: 521 QNT*SIARHGSRSVYGAYIYPCNGPCHGPY 432
Score = 57.0 bits (118), Expect(3) = 1e-034
Identities = 28/60 (46%), Positives = 35/60 (58%)
Frame = +3 / +3
Query: 231 IGTAAGTDTRIDISVIGTTTTMTSYRSCILLKSARYWMSVYGERTCKTCMLYSRMKLNL* 410
IGT AGT T IDIS I TTTTMTSYRSC+L + + G C + + R ++*
Sbjct: 432 IGTVAGTVTGIDISAIDTTTTMTSYRSCVLKSARYWLSMELGLDDCVNKVYHFRASTDV* 611
Score = 39.1 bits (79), Expect(4) = 6e-028
Identities = 14/17 (82%), Positives = 17/17 (100%)
Frame = +3 / +3
Query: 363 TCKTCMLYSRMKLNL*F 413
TC+TCMLY+R+KLNL*F
Sbjct: 654 TCRTCMLYTRIKLNL*F 704
Score = 38.6 bits (78), Expect(5) = 8e-042
Identities = 16/22 (72%), Positives = 16/22 (72%)
Frame = -2 / -3
Query: 423 PIAKITGSASSVSTTYKFCTCA 358
P KIT SA V TTYKFCTCA
Sbjct: 714 PSPKITNSA*FVCTTYKFCTCA 649
Score = 37.7 bits (76), Expect(5) = 2e-027
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = -1 / -2
Query: 415 QNHRFSFIREYNIQVLHV 362
+NH+FS IR YNIQVLHV
Sbjct: 706 KNHKFSLIRVYNIQVLHV 653
Score = 29.5 bits (58), Expect(3) = 1e-034
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3 / +1
Query: 411 FWRWVEIGHR 440
FWRWVEI HR
Sbjct: 703 FWRWVEIDHR 732
Score = 28.1 bits (55), Expect(4) = 6e-028
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3 / +3
Query: 285 TTTMTSYRSCILLKSARYWMSV 350
TTT + +LKSARYW+S+
Sbjct: 483 TTTTMTSYRSCVLKSARYWLSM 548
Score = 28.1 bits (55), Expect(5) = 8e-042
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = -2 / -2
Query: 444 RRDGQSLPIAK 412
RRDGQSLPIAK
Sbjct: 736 RRDGQSLPIAK 704
Score = 27.2 bits (53), Expect(5) = 2e-027
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -1 / -2
Query: 277 MTLISILVSVPAAVPI 230
M LISI V+VPA VPI
Sbjct: 478 MALISIPVTVPATVPI 431
Score = 26.3 bits (51), Expect(5) = 2e-027
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = -2 / -3
Query: 318 EYRIYSSSW*S*C 280
++ IYSSSW*S*C
Sbjct: 519 KHMIYSSSW*S*C 481
Score = 25.4 bits (49), Expect(5) = 2e-027
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -3 / -3
Query: 440 AMANLYPSPK 411
AM NLYPSPK
Sbjct: 732 AMVNLYPSPK 703
Score = 22.6 bits (43), Expect(4) = 6e-028
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +1 / +2
Query: 412 FGDG*RLAIAS 444
FGDG*RL IA+
Sbjct: 704 FGDG*RLTIAA 736
Score = 22.1 bits (42), Expect(5) = 8e-042
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -3 / -1
Query: 347 RHPISCRFQ 321
R PI+CRFQ
Sbjct: 545 RQPITCRFQ 519
>gb|CF428452.1|CF428452 PH1_15_C10.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_15_C10_A002 3', mRNA sequence
Length = 551
Score = 64.8 bits (135), Expect(5) = 8e-036
Identities = 24/30 (80%), Positives = 25/30 (83%)
Frame = -3 / -3
Query: 320 KNTGSIARHGSRSAYDAYIYPCIGPCRGPY 231
+NT SIARHGSRS Y AYIYPC GPC GPY
Sbjct: 252 QNT*SIARHGSRSVYGAYIYPCNGPCHGPY 163
Score = 57.0 bits (118), Expect(3) = 1e-025
Identities = 28/60 (46%), Positives = 35/60 (58%)
Frame = +3 / +1
Query: 231 IGTAAGTDTRIDISVIGTTTTMTSYRSCILLKSARYWMSVYGERTCKTCMLYSRMKLNL* 410
IGT AGT T IDIS I TTTTMTSYRSC+L + + G C + + R ++*
Sbjct: 163 IGTVAGTVTGIDISAIDTTTTMTSYRSCVLKSARYWLSMELGLDDCVNKVYHFRASTDV* 342
Score = 55.1 bits (114), Expect(3) = 1e-025
Identities = 22/35 (62%), Positives = 24/35 (68%)
Frame = +3 / +2
Query: 411 FWRWVEIGHRVCN*ISTLRCNMSCSTVLALLFTVC 515
FWRWVEI HR CN*IS LR NMSCS + + C
Sbjct: 434 FWRWVEIDHRGCN*ISPLRGNMSCSILALSFTSKC 538
Score = 54.2 bits (112), Expect(5) = 8e-036
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = -2 / -1
Query: 486 YYSSYCIATWKFSYRRDGQSLPIAK 412
YYSSYC+A KFSY RDGQSLPIAK
Sbjct: 509 YYSSYCLAMGKFSYSRDGQSLPIAK 435
Score = 52.4 bits (108), Expect(5) = 2e-022
Identities = 22/25 (88%), Positives = 22/25 (88%)
Frame = -3 / -2
Query: 485 TTAHIASQRGNLVTDAMANLYPSPK 411
TTAHIASQ GNLVT AM NLYPSPK
Sbjct: 508 TTAHIASQWGNLVTAAMVNLYPSPK 434
Score = 49.6 bits (102), Expect(4) = 4e-021
Identities = 21/25 (84%), Positives = 23/25 (92%)
Frame = +1 / +3
Query: 412 FGDG*RLAIASVTKFPRCDAI*AVV 486
FGDG*RL IA+VTKFP C+AI*AVV
Sbjct: 435 FGDG*RLTIAAVTKFPHCEAI*AVV 509
Score = 43.7 bits (89), Expect(5) = 8e-036
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = -1 / -1
Query: 118 ICSKSFIYNMSCIVWV 71
ICSKSFIYNMSCIVW+
Sbjct: 50 ICSKSFIYNMSCIVWI 3
Score = 42.8 bits (87), Expect(3) = 1e-025
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +2 / +3
Query: 71 DPDYARHVVDETFAAN 118
DPDYARHVVDETFAAN
Sbjct: 3 DPDYARHVVDETFAAN 50
Score = 40.5 bits (82), Expect(4) = 4e-021
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +1 / +2
Query: 76 RLCKTCCR*NFCC 114
RLCKTCCR*NFCC
Sbjct: 8 RLCKTCCR*NFCC 46
Score = 39.1 bits (79), Expect(4) = 4e-021
Identities = 14/17 (82%), Positives = 17/17 (100%)
Frame = +3 / +1
Query: 363 TCKTCMLYSRMKLNL*F 413
TC+TCMLY+R+KLNL*F
Sbjct: 385 TCRTCMLYTRIKLNL*F 435
Score = 38.6 bits (78), Expect(5) = 8e-036
Identities = 16/22 (72%), Positives = 16/22 (72%)
Frame = -2 / -2
Query: 423 PIAKITGSASSVSTTYKFCTCA 358
P KIT SA V TTYKFCTCA
Sbjct: 445 PSPKITNSA*FVCTTYKFCTCA 380
Score = 37.7 bits (76), Expect(5) = 2e-022
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = -1 / -1
Query: 415 QNHRFSFIREYNIQVLHV 362
+NH+FS IR YNIQVLHV
Sbjct: 437 KNHKFSLIRVYNIQVLHV 384
Score = 33.6 bits (67), Expect(5) = 2e-022
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = -3 / -3
Query: 107 KFHLQHVLHSLGH 69
KFHLQHVLHSL H
Sbjct: 39 KFHLQHVLHSLDH 1
Score = 28.1 bits (55), Expect(4) = 4e-021
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3 / +1
Query: 285 TTTMTSYRSCILLKSARYWMSV 350
TTT + +LKSARYW+S+
Sbjct: 214 TTTTMTSYRSCVLKSARYWLSM 279
Score = 27.2 bits (53), Expect(5) = 2e-022
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -1 / -1
Query: 277 MTLISILVSVPAAVPI 230
M LISI V+VPA VPI
Sbjct: 209 MALISIPVTVPATVPI 162
Score = 26.3 bits (51), Expect(5) = 2e-022
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = -2 / -2
Query: 318 EYRIYSSSW*S*C 280
++ IYSSSW*S*C
Sbjct: 250 KHMIYSSSW*S*C 212
Score = 22.1 bits (42), Expect(5) = 8e-036
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -3 / -3
Query: 347 RHPISCRFQ 321
R PI+CRFQ
Sbjct: 276 RQPITCRFQ 250
>gb|BM329289.1|BM329289 PIC1_35_G09.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 654
Score = 64.8 bits (135), Expect(5) = 1e-030
Identities = 24/30 (80%), Positives = 25/30 (83%)
Frame = -3 / -3
Query: 320 KNTGSIARHGSRSAYDAYIYPCIGPCRGPY 231
+NT SIARHGSRS Y AYIYPC GPC GPY
Sbjct: 232 QNT*SIARHGSRSVYGAYIYPCNGPCHGPY 143
Score = 57.0 bits (118), Expect(3) = 4e-021
Identities = 28/60 (46%), Positives = 35/60 (58%)
Frame = +3 / +2
Query: 231 IGTAAGTDTRIDISVIGTTTTMTSYRSCILLKSARYWMSVYGERTCKTCMLYSRMKLNL* 410
IGT AGT T IDIS I TTTTMTSYRSC+L + + G C + + R ++*
Sbjct: 143 IGTVAGTVTGIDISAIDTTTTMTSYRSCVLKSARYWLSMELGLDDCVNKVYHFRASTDV* 322
Score = 55.1 bits (114), Expect(3) = 4e-021
Identities = 22/35 (62%), Positives = 24/35 (68%)
Frame = +3 / +3
Query: 411 FWRWVEIGHRVCN*ISTLRCNMSCSTVLALLFTVC 515
FWRWVEI HR CN*IS LR NMSCS + + C
Sbjct: 414 FWRWVEIDHRGCN*ISPLRGNMSCSILALSFTSKC 518
Score = 54.2 bits (112), Expect(5) = 1e-030
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = -2 / -1
Query: 486 YYSSYCIATWKFSYRRDGQSLPIAK 412
YYSSYC+A KFSY RDGQSLPIAK
Sbjct: 489 YYSSYCLAMGKFSYSRDGQSLPIAK 415
Score = 38.6 bits (78), Expect(5) = 1e-030
Identities = 16/22 (72%), Positives = 16/22 (72%)
Frame = -2 / -2
Query: 423 PIAKITGSASSVSTTYKFCTCA 358
P KIT SA V TTYKFCTCA
Sbjct: 425 PSPKITNSA*FVCTTYKFCTCA 360
Score = 27.6 bits (54), Expect(3) = 4e-021
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1 / +3
Query: 91 CCR*NFCC 114
CCR*NFCC
Sbjct: 3 CCR*NFCC 26
Score = 26.3 bits (51), Expect(5) = 1e-030
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -1 / -1
Query: 118 ICSKSFIYNM 89
ICS+SFIYNM
Sbjct: 30 ICSRSFIYNM 1
Score = 22.1 bits (42), Expect(5) = 1e-030
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -3 / -3
Query: 347 RHPISCRFQ 321
R PI+CRFQ
Sbjct: 256 RQPITCRFQ 230
>gb|BM328262.1|BM328262 PIC1_23_A04.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 410
Score = 64.8 bits (135), Expect(4) = 4e-028
Identities = 24/30 (80%), Positives = 25/30 (83%)
Frame = -3 / -1
Query: 320 KNTGSIARHGSRSAYDAYIYPCIGPCRGPY 231
+NT SIARHGSRS Y AYIYPC GPC GPY
Sbjct: 143 QNT*SIARHGSRSVYGAYIYPCNGPCHGPY 54
Score = 54.2 bits (112), Expect(4) = 4e-028
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = -2 / -2
Query: 486 YYSSYCIATWKFSYRRDGQSLPIAK 412
YYSSYC+A KFSY RDGQSLPIAK
Sbjct: 400 YYSSYCLAMGKFSYSRDGQSLPIAK 326
Score = 38.6 bits (78), Expect(4) = 4e-028
Identities = 16/22 (72%), Positives = 16/22 (72%)
Frame = -2 / -3
Query: 423 PIAKITGSASSVSTTYKFCTCA 358
P KIT SA V TTYKFCTCA
Sbjct: 336 PSPKITNSA*FVCTTYKFCTCA 271
Score = 22.1 bits (42), Expect(4) = 4e-028
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -3 / -1
Query: 347 RHPISCRFQ 321
R PI+CRFQ
Sbjct: 167 RQPITCRFQ 141
>gb|BM329205.1|BM329205 PIC1_34_G04.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 539
Score = 64.8 bits (135), Expect(4) = 7e-028
Identities = 24/30 (80%), Positives = 25/30 (83%)
Frame = -3 / -3
Query: 320 KNTGSIARHGSRSAYDAYIYPCIGPCRGPY 231
+NT SIARHGSRS Y AYIYPC GPC GPY
Sbjct: 117 QNT*SIARHGSRSVYGAYIYPCNGPCHGPY 28
Score = 54.2 bits (112), Expect(4) = 7e-028
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = -2 / -1
Query: 486 YYSSYCIATWKFSYRRDGQSLPIAK 412
YYSSYC+A KFSY RDGQSLPIAK
Sbjct: 374 YYSSYCLAMGKFSYSRDGQSLPIAK 300
Score = 38.6 bits (78), Expect(4) = 7e-028
Identities = 16/22 (72%), Positives = 16/22 (72%)
Frame = -2 / -2
Query: 423 PIAKITGSASSVSTTYKFCTCA 358
P KIT SA V TTYKFCTCA
Sbjct: 310 PSPKITNSA*FVCTTYKFCTCA 245
Score = 22.1 bits (42), Expect(4) = 7e-028
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -3 / -3
Query: 347 RHPISCRFQ 321
R PI+CRFQ
Sbjct: 141 RQPITCRFQ 115
>gb|CF431305.1|CF431305 NIT1_5_F06.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_5_F06_A002 3', mRNA sequence
Length = 524
Score = 64.8 bits (135), Expect(4) = 8e-028
Identities = 24/30 (80%), Positives = 25/30 (83%)
Frame = -3 / -3
Query: 320 KNTGSIARHGSRSAYDAYIYPCIGPCRGPY 231
+NT SIARHGSRS Y AYIYPC GPC GPY
Sbjct: 261 QNT*SIARHGSRSVYGAYIYPCNGPCHGPY 172
Score = 54.2 bits (112), Expect(4) = 8e-028
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = -2 / -1
Query: 486 YYSSYCIATWKFSYRRDGQSLPIAK 412
YYSSYC+A KFSY RDGQSLPIAK
Sbjct: 518 YYSSYCLAMGKFSYSRDGQSLPIAK 444
Score = 38.6 bits (78), Expect(4) = 8e-028
Identities = 16/22 (72%), Positives = 16/22 (72%)
Frame = -2 / -2
Query: 423 PIAKITGSASSVSTTYKFCTCA 358
P KIT SA V TTYKFCTCA
Sbjct: 454 PSPKITNSA*FVCTTYKFCTCA 389
Score = 22.1 bits (42), Expect(4) = 8e-028
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -3 / -3
Query: 347 RHPISCRFQ 321
R PI+CRFQ
Sbjct: 285 RQPITCRFQ 259
>gb|AI724629.1|AI724629 RHIZ1_11_A04.y1_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 422
Score = 62.0 bits (129), Expect(4) = 3e-024
Identities = 23/30 (76%), Positives = 24/30 (80%)
Frame = -3 / -1
Query: 320 KNTGSIARHGSRSAYDAYIYPCIGPCRGPY 231
+ T SIARHGSRS Y AYIYPC GPC GPY
Sbjct: 143 QKT*SIARHGSRSVYGAYIYPCNGPCHGPY 54
Score = 41.4 bits (84), Expect(4) = 3e-024
Identities = 17/20 (85%), Positives = 17/20 (85%)
Frame = -1 / -1
Query: 472 LHRNVEI*LQTRWPISTHRQ 413
LHRN EI*LQ RW ISTHRQ
Sbjct: 386 LHRNGEI*LQPRWSISTHRQ 327
Score = 38.6 bits (78), Expect(4) = 3e-024
Identities = 16/22 (72%), Positives = 16/22 (72%)
Frame = -2 / -3
Query: 423 PIAKITGSASSVSTTYKFCTCA 358
P KIT SA V TTYKFCTCA
Sbjct: 336 PSPKITNSA*FVCTTYKFCTCA 271
Score = 24.4 bits (47), Expect(4) = 3e-024
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -3 / -1
Query: 347 RHPISCRFQK 318
R P+SCRFQK
Sbjct: 167 RQPMSCRFQK 138
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 565,499,965
Number of Sequences: 832831
Number of extensions: 6655129
Number of successful extensions: 53561
Number of sequences better than 1.0e-020: 11
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 17229097872
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)