TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 7297817.2.1
(687 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF071129.1|CF071129 FE1_15_C11.g1_A002 Iron-deficient se... 147 6e-057
gb|CX610938.1|CX610938 ANR1_21_E04.g1_A002 Anaerobic roots ... 139 3e-055
gb|BE359281.1|BE359281 DG1_40_A11.b1_A002 Dark Grown 1 (DG1... 147 1e-054
gb|CF071081.1|CF071081 FE1_15_C11.b1_A002 Iron-deficient se... 147 8e-053
gb|CW330483.1|CW330483 104_827_11480399_116_36007_090 Sorgh... 147 1e-049
gb|BE355763.1|BE355763 DG1_116_F03.g1_A002 Dark Grown 1 (DG... 147 3e-049
gb|AW671041.1|AW671041 LG1_278_A02.b1_A002 Light Grown 1 (L... 147 6e-049
gb|BE355700.1|BE355700 DG1_116_F03.b1_A002 Dark Grown 1 (DG... 147 6e-049
gb|AW671712.1|AW671712 LG1_351_A08.b1_A002 Light Grown 1 (L... 147 6e-049
gb|AW746433.1|AW746433 WS1_53_G05.b1_A002 Water-stressed 1 ... 147 6e-049
gb|BE359416.1|BE359416 DG1_40_A11.g1_A002 Dark Grown 1 (DG1... 147 8e-049
gb|CX610851.1|CX610851 ANR1_21_E04.b1_A002 Anaerobic roots ... 139 2e-046
gb|AW671793.1|AW671793 LG1_351_A08.g1_A002 Light Grown 1 (L... 83 1e-030
gb|CW456197.1|CW456197 fsbb001f201h01f0 Sorghum methylation... 104 6e-030
gb|AW746506.1|AW746506 WS1_53_G05.g1_A002 Water-stressed 1 ... 77 1e-025
gb|AI724444.1|AI724444 RHIZ1_36_G08.y2_A001 Rhizome1 (RHIZ1... 82 1e-024
gb|AW284788.1|AW284788 LG1_278_A02.g1_A002 Light Grown 1 (L... 55 6e-023
gb|BG049334.1|BG049334 OV1_18_F04.g1_A002 Ovary 1 (OV1) Sor... 48 2e-021
gb|BG240160.1|BG240160 OV1_18_F04.b1_A002 Ovary 1 (OV1) Sor... 48 3e-021
>gb|CF071129.1|CF071129 FE1_15_C11.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_15_C11_A002 5', mRNA sequence
Length = 801
Score = 147 bits (315), Expect(7) = 6e-057
Identities = 61/62 (98%), Positives = 62/62 (100%)
Frame = -3 / +2
Query: 562 QAGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDVRYGGL 383
QAGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSD+RYGGL
Sbjct: 185 QAGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDIRYGGL 364
Query: 382 *T 377
*T
Sbjct: 365 *T 370
Score = 134 bits (288), Expect(6) = 4e-052
Identities = 58/59 (98%), Positives = 58/59 (98%)
Frame = +3 / -1
Query: 378 VQRPP*RTSENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYDL 554
VQRPP*R SENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYDL
Sbjct: 369 VQRPP*RMSENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYDL 193
Score = 52.8 bits (109), Expect(6) = 4e-052
Identities = 19/21 (90%), Positives = 19/21 (90%)
Frame = +3 / -1
Query: 615 YADECSCGTDLHFSMDPPPLL 677
Y DECSCGTDLHFSMDPP LL
Sbjct: 132 YTDECSCGTDLHFSMDPPLLL 70
Score = 47.3 bits (97), Expect(7) = 6e-057
Identities = 18/19 (94%), Positives = 18/19 (94%)
Frame = -3 / +2
Query: 676 RRGGGSMEKCRSVPHEHSS 620
RR GGSMEKCRSVPHEHSS
Sbjct: 71 RRRGGSMEKCRSVPHEHSS 127
Score = 34.1 bits (68), Expect(6) = 4e-052
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1 / -2
Query: 106 KANRENTLTDLESSHEHMQ*LETIHTQFIHAHVH 207
KAN ++T + +H ++ HTQFIHAH+H
Sbjct: 686 KAN*KHTGRSGKQAHSDLRPTMHTHTQFIHAHMH 585
Score = 31.3 bits (62), Expect(7) = 6e-057
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2 / +2
Query: 353 ACNASYSYDRTHICVCTNH 297
ACN SYSY T+IC+ H
Sbjct: 392 ACNPSYSYSTTYICMIYIH 448
Score = 29.5 bits (58), Expect(6) = 4e-052
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +2 / -3
Query: 197 HMYTVVVVYIRSSYLAW 247
H++++ +YI SSYLAW
Sbjct: 574 HVHSIASIYICSSYLAW 524
Score = 28.1 bits (55), Expect(7) = 6e-057
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3 / +1
Query: 184 VCVWSQVTACVRGCFPDRSVCF 119
VCV + CFPDR VCF
Sbjct: 610 VCVCMVGLKSLCACFPDRPVCF 675
Score = 27.2 bits (53), Expect(7) = 6e-057
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2 / +1
Query: 248 AKLNSCCVYILLLLCTCA 195
AKL+SCC+YI C A
Sbjct: 523 AKLDSCCIYIWRQYCVHA 576
Score = 26.3 bits (51), Expect(7) = 6e-057
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1 / +3
Query: 318 YMCMHEPWCSYICNYICTRK 259
Y+ MHE I NYICT K
Sbjct: 438 YIYMHEYIMMLI*NYICTHK 497
Score = 24.0 bits (46), Expect(7) = 6e-057
Identities = 7/10 (70%), Positives = 10/10 (100%)
Frame = -1 / +3
Query: 207 VYMCVYELCV 178
+++CVYELCV
Sbjct: 585 MHVCVYELCV 614
Score = 24.0 bits (46), Expect(6) = 4e-052
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = +2 / -2
Query: 287 YEHHGSCIHIYV 322
YEHH +H+Y+
Sbjct: 473 YEHHDILMHVYI 438
Score = 22.6 bits (43), Expect(6) = 4e-052
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2 / -2
Query: 314 IYVCGRRSRMRCMQ 355
IY+ RSRM CMQ
Sbjct: 431 IYMWWSRSRMDCMQ 390
>gb|CX610938.1|CX610938 ANR1_21_E04.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_21_E04_A002 5', mRNA sequence
Length = 759
Score = 139 bits (299), Expect(7) = 3e-055
Identities = 58/62 (93%), Positives = 61/62 (98%)
Frame = -3 / +1
Query: 562 QAGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDVRYGGL 383
QAGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRI+TTVRSSV WLKS+FSD+RYGGL
Sbjct: 193 QAGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIRTTVRSSV*WLKSEFSDIRYGGL 372
Query: 382 *T 377
*T
Sbjct: 373 *T 378
Score = 126 bits (269), Expect(5) = 5e-048
Identities = 55/59 (93%), Positives = 55/59 (93%)
Frame = +3 / -2
Query: 378 VQRPP*RTSENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYDL 554
VQRPP R SEN DLSH TLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYDL
Sbjct: 377 VQRPPYRMSENSDLSH*TLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYDL 201
Score = 52.8 bits (109), Expect(5) = 5e-048
Identities = 19/21 (90%), Positives = 19/21 (90%)
Frame = +3 / -2
Query: 615 YADECSCGTDLHFSMDPPPLL 677
Y DECSCGTDLHFSMDPP LL
Sbjct: 140 YTDECSCGTDLHFSMDPPLLL 78
Score = 47.3 bits (97), Expect(7) = 3e-055
Identities = 18/19 (94%), Positives = 18/19 (94%)
Frame = -3 / +1
Query: 676 RRGGGSMEKCRSVPHEHSS 620
RR GGSMEKCRSVPHEHSS
Sbjct: 79 RRRGGSMEKCRSVPHEHSS 135
Score = 34.1 bits (68), Expect(5) = 5e-048
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1 / -3
Query: 106 KANRENTLTDLESSHEHMQ*LETIHTQFIHAHVH 207
KAN ++T + +H ++ HTQFIHAH+H
Sbjct: 694 KAN*KHTGRSGKQAHSDLRPTMHTHTQFIHAHMH 593
Score = 29.9 bits (59), Expect(7) = 3e-055
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2 / +1
Query: 353 ACNASYSYDRTHICVCTNH 297
ACN +YSY T+IC+ H
Sbjct: 400 ACNPTYSYSTTYICMIYIH 456
Score = 29.5 bits (58), Expect(7) = 3e-055
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2 / +3
Query: 248 AKLNSCCVYILLLLCTCA 195
AKLNSCC+YI C A
Sbjct: 531 AKLNSCCIYIWRQYCVHA 584
Score = 29.5 bits (58), Expect(5) = 5e-048
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +2 / -1
Query: 197 HMYTVVVVYIRSSYLAW 247
H++++ +YI SSYLAW
Sbjct: 582 HVHSIASIYICSSYLAW 532
Score = 28.1 bits (55), Expect(7) = 3e-055
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3 / +3
Query: 184 VCVWSQVTACVRGCFPDRSVCF 119
VCV + CFPDR VCF
Sbjct: 618 VCVCMVGLKSLCACFPDRPVCF 683
Score = 26.3 bits (51), Expect(7) = 3e-055
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1 / +2
Query: 318 YMCMHEPWCSYICNYICTRK 259
Y+ MHE I NYICT K
Sbjct: 446 YIYMHEYIMMLI*NYICTHK 505
Score = 24.0 bits (46), Expect(7) = 3e-055
Identities = 7/10 (70%), Positives = 10/10 (100%)
Frame = -1 / +2
Query: 207 VYMCVYELCV 178
+++CVYELCV
Sbjct: 593 MHVCVYELCV 622
Score = 24.0 bits (46), Expect(5) = 5e-048
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = +2 / -3
Query: 287 YEHHGSCIHIYV 322
YEHH +H+Y+
Sbjct: 481 YEHHDILMHVYI 446
>gb|BE359281.1|BE359281 DG1_40_A11.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 614
Score = 147 bits (315), Expect(6) = 1e-054
Identities = 61/62 (98%), Positives = 62/62 (100%)
Frame = -3 / +2
Query: 562 QAGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDVRYGGL 383
QAGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSD+RYGGL
Sbjct: 155 QAGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDIRYGGL 334
Query: 382 *T 377
*T
Sbjct: 335 *T 340
Score = 134 bits (288), Expect(6) = 8e-051
Identities = 58/59 (98%), Positives = 58/59 (98%)
Frame = +3 / -3
Query: 378 VQRPP*RTSENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYDL 554
VQRPP*R SENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYDL
Sbjct: 339 VQRPP*RMSENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYDL 163
Score = 52.8 bits (109), Expect(6) = 8e-051
Identities = 19/21 (90%), Positives = 19/21 (90%)
Frame = +3 / -3
Query: 615 YADECSCGTDLHFSMDPPPLL 677
Y DECSCGTDLHFSMDPP LL
Sbjct: 102 YTDECSCGTDLHFSMDPPLLL 40
Score = 47.3 bits (97), Expect(6) = 1e-054
Identities = 18/19 (94%), Positives = 18/19 (94%)
Frame = -3 / +2
Query: 676 RRGGGSMEKCRSVPHEHSS 620
RR GGSMEKCRSVPHEHSS
Sbjct: 41 RRRGGSMEKCRSVPHEHSS 97
Score = 31.3 bits (62), Expect(6) = 1e-054
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2 / +2
Query: 353 ACNASYSYDRTHICVCTNH 297
ACN SYSY T+IC+ H
Sbjct: 362 ACNPSYSYSTTYICMIYIH 418
Score = 29.5 bits (58), Expect(6) = 1e-054
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2 / +1
Query: 248 AKLNSCCVYILLLLCTCA 195
AKLNSCC+YI C A
Sbjct: 493 AKLNSCCIYIWRQYCVHA 546
Score = 29.5 bits (58), Expect(6) = 8e-051
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +2 / -2
Query: 197 HMYTVVVVYIRSSYLAW 247
H++++ +YI SSYLAW
Sbjct: 544 HVHSIASIYICSSYLAW 494
Score = 29.0 bits (57), Expect(6) = 8e-051
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1 / -1
Query: 178 HTQFIHAHVH 207
HTQFIHAH+H
Sbjct: 584 HTQFIHAHMH 555
Score = 26.3 bits (51), Expect(6) = 1e-054
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1 / +3
Query: 318 YMCMHEPWCSYICNYICTRK 259
Y+ MHE I NYICT K
Sbjct: 408 YIYMHEYIMMLI*NYICTHK 467
Score = 24.0 bits (46), Expect(6) = 1e-054
Identities = 7/10 (70%), Positives = 10/10 (100%)
Frame = -1 / +3
Query: 207 VYMCVYELCV 178
+++CVYELCV
Sbjct: 555 MHVCVYELCV 584
Score = 24.0 bits (46), Expect(6) = 8e-051
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = +2 / -1
Query: 287 YEHHGSCIHIYV 322
YEHH +H+Y+
Sbjct: 443 YEHHDILMHVYI 408
Score = 22.6 bits (43), Expect(6) = 8e-051
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2 / -1
Query: 314 IYVCGRRSRMRCMQ 355
IY+ RSRM CMQ
Sbjct: 401 IYMWWSRSRMDCMQ 360
>gb|CF071081.1|CF071081 FE1_15_C11.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_15_C11_A002 3', mRNA sequence
Length = 732
Score = 147 bits (315), Expect(6) = 8e-053
Identities = 61/62 (98%), Positives = 62/62 (100%)
Frame = -3 / +2
Query: 562 QAGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDVRYGGL 383
QAGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSD+RYGGL
Sbjct: 137 QAGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDIRYGGL 316
Query: 382 *T 377
*T
Sbjct: 317 *T 322
Score = 134 bits (288), Expect(5) = 1e-050
Identities = 58/59 (98%), Positives = 58/59 (98%)
Frame = +3 / -1
Query: 378 VQRPP*RTSENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYDL 554
VQRPP*R SENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYDL
Sbjct: 321 VQRPP*RMSENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYDL 145
Score = 52.8 bits (109), Expect(5) = 1e-050
Identities = 19/21 (90%), Positives = 19/21 (90%)
Frame = +3 / -1
Query: 615 YADECSCGTDLHFSMDPPPLL 677
Y DECSCGTDLHFSMDPP LL
Sbjct: 84 YTDECSCGTDLHFSMDPPLLL 22
Score = 47.3 bits (97), Expect(6) = 8e-053
Identities = 18/19 (94%), Positives = 18/19 (94%)
Frame = -3 / +2
Query: 676 RRGGGSMEKCRSVPHEHSS 620
RR GGSMEKCRSVPHEHSS
Sbjct: 23 RRRGGSMEKCRSVPHEHSS 79
Score = 34.1 bits (68), Expect(5) = 1e-050
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1 / -1
Query: 106 KANRENTLTDLESSHEHMQ*LETIHTQFIHAHVH 207
KAN ++T + +H ++ HTQFIHAH+H
Sbjct: 639 KAN*KHTGRSGKQAHSDLRPTMHTHTQFIHAHMH 538
Score = 29.5 bits (58), Expect(5) = 1e-050
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +2 / -2
Query: 197 HMYTVVVVYIRSSYLAW 247
H++++ +YI SSYLAW
Sbjct: 527 HVHSIASIYICSSYLAW 477
Score = 28.1 bits (55), Expect(6) = 8e-053
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3 / +2
Query: 184 VCVWSQVTACVRGCFPDRSVCF 119
VCV + CFPDR VCF
Sbjct: 563 VCVCMVGLKSLCACFPDRPVCF 628
Score = 27.2 bits (53), Expect(6) = 8e-053
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2 / +2
Query: 248 AKLNSCCVYILLLLCTCA 195
AKL+SCC+YI C A
Sbjct: 476 AKLDSCCIYIWRQYCVHA 529
Score = 26.3 bits (51), Expect(6) = 8e-053
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1 / +1
Query: 318 YMCMHEPWCSYICNYICTRK 259
Y+ MHE I NYICT K
Sbjct: 391 YIYMHEYIMMLI*NYICTHK 450
Score = 24.0 bits (46), Expect(6) = 8e-053
Identities = 7/10 (70%), Positives = 10/10 (100%)
Frame = -1 / +1
Query: 207 VYMCVYELCV 178
+++CVYELCV
Sbjct: 538 MHVCVYELCV 567
Score = 24.0 bits (46), Expect(5) = 1e-050
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = +2 / -1
Query: 287 YEHHGSCIHIYV 322
YEHH +H+Y+
Sbjct: 426 YEHHDILMHVYI 391
>gb|CW330483.1|CW330483 104_827_11480399_116_36007_090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11480399, DNA
sequence
Length = 695
Score = 147 bits (315), Expect(5) = 1e-049
Identities = 61/62 (98%), Positives = 62/62 (100%)
Frame = -3 / -1
Query: 562 QAGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDVRYGGL 383
QAGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSD+RYGGL
Sbjct: 359 QAGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDIRYGGL 180
Query: 382 *T 377
*T
Sbjct: 179 *T 174
Score = 134 bits (288), Expect(4) = 1e-043
Identities = 58/59 (98%), Positives = 58/59 (98%)
Frame = +3 / +1
Query: 378 VQRPP*RTSENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYDL 554
VQRPP*R SENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYDL
Sbjct: 175 VQRPP*RMSENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYDL 351
Score = 52.8 bits (109), Expect(4) = 1e-043
Identities = 19/21 (90%), Positives = 19/21 (90%)
Frame = +3 / +1
Query: 615 YADECSCGTDLHFSMDPPPLL 677
Y DECSCGTDLHFSMDPP LL
Sbjct: 412 YTDECSCGTDLHFSMDPPLLL 474
Score = 47.3 bits (97), Expect(5) = 1e-049
Identities = 18/19 (94%), Positives = 18/19 (94%)
Frame = -3 / -1
Query: 676 RRGGGSMEKCRSVPHEHSS 620
RR GGSMEKCRSVPHEHSS
Sbjct: 473 RRRGGSMEKCRSVPHEHSS 417
Score = 31.3 bits (62), Expect(5) = 1e-049
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2 / -1
Query: 353 ACNASYSYDRTHICVCTNH 297
ACN SYSY T+IC+ H
Sbjct: 152 ACNPSYSYSTTYICMIYIH 96
Score = 26.3 bits (51), Expect(5) = 1e-049
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1 / -2
Query: 318 YMCMHEPWCSYICNYICTRK 259
Y+ MHE I NYICT K
Sbjct: 106 YIYMHEYIMMLI*NYICTHK 47
Score = 24.0 bits (46), Expect(4) = 1e-043
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = +2 / +2
Query: 287 YEHHGSCIHIYV 322
YEHH +H+Y+
Sbjct: 71 YEHHDILMHVYI 106
Score = 22.6 bits (43), Expect(4) = 1e-043
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2 / +2
Query: 314 IYVCGRRSRMRCMQ 355
IY+ RSRM CMQ
Sbjct: 113 IYMWWSRSRMDCMQ 154
Score = 21.7 bits (41), Expect(5) = 1e-049
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2 / -3
Query: 248 AKLNSCC 228
AKLNSCC
Sbjct: 21 AKLNSCC 1
>gb|BE355763.1|BE355763 DG1_116_F03.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 547
Score = 147 bits (315), Expect(6) = 3e-049
Identities = 61/62 (98%), Positives = 62/62 (100%)
Frame = -3 / +2
Query: 562 QAGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDVRYGGL 383
QAGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSD+RYGGL
Sbjct: 11 QAGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDIRYGGL 190
Query: 382 *T 377
*T
Sbjct: 191 *T 196
Score = 134 bits (288), Expect(5) = 9e-042
Identities = 58/59 (98%), Positives = 58/59 (98%)
Frame = +3 / -2
Query: 378 VQRPP*RTSENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYDL 554
VQRPP*R SENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYDL
Sbjct: 195 VQRPP*RMSENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYDL 19
Score = 34.1 bits (68), Expect(5) = 9e-042
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1 / -3
Query: 106 KANRENTLTDLESSHEHMQ*LETIHTQFIHAHVH 207
KAN ++T + +H ++ HTQFIHAH+H
Sbjct: 512 KAN*KHTGRSGKQAHSDLRPTMHTHTQFIHAHMH 411
Score = 31.3 bits (62), Expect(6) = 3e-049
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2 / +2
Query: 353 ACNASYSYDRTHICVCTNH 297
ACN SYSY T+IC+ H
Sbjct: 218 ACNPSYSYSTTYICMIYIH 274
Score = 29.5 bits (58), Expect(6) = 3e-049
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2 / +1
Query: 248 AKLNSCCVYILLLLCTCA 195
AKLNSCC+YI C A
Sbjct: 349 AKLNSCCIYIWRQYCVHA 402
Score = 29.5 bits (58), Expect(5) = 9e-042
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +2 / -1
Query: 197 HMYTVVVVYIRSSYLAW 247
H++++ +YI SSYLAW
Sbjct: 400 HVHSIASIYICSSYLAW 350
Score = 28.1 bits (55), Expect(6) = 3e-049
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3 / +1
Query: 184 VCVWSQVTACVRGCFPDRSVCF 119
VCV + CFPDR VCF
Sbjct: 436 VCVCMVGLKSLCACFPDRPVCF 501
Score = 26.3 bits (51), Expect(6) = 3e-049
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1 / +3
Query: 318 YMCMHEPWCSYICNYICTRK 259
Y+ MHE I NYICT K
Sbjct: 264 YIYMHEYIMMLI*NYICTHK 323
Score = 24.0 bits (46), Expect(6) = 3e-049
Identities = 7/10 (70%), Positives = 10/10 (100%)
Frame = -1 / +3
Query: 207 VYMCVYELCV 178
+++CVYELCV
Sbjct: 411 MHVCVYELCV 440
Score = 24.0 bits (46), Expect(5) = 9e-042
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = +2 / -3
Query: 287 YEHHGSCIHIYV 322
YEHH +H+Y+
Sbjct: 299 YEHHDILMHVYI 264
Score = 22.6 bits (43), Expect(5) = 9e-042
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2 / -3
Query: 314 IYVCGRRSRMRCMQ 355
IY+ RSRM CMQ
Sbjct: 257 IYMWWSRSRMDCMQ 216
>gb|AW671041.1|AW671041 LG1_278_A02.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 507
Score = 147 bits (315), Expect(4) = 6e-049
Identities = 61/62 (98%), Positives = 62/62 (100%)
Frame = -3 / +1
Query: 562 QAGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDVRYGGL 383
QAGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSD+RYGGL
Sbjct: 178 QAGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDIRYGGL 357
Query: 382 *T 377
*T
Sbjct: 358 *T 363
Score = 134 bits (288), Expect(4) = 1e-043
Identities = 58/59 (98%), Positives = 58/59 (98%)
Frame = +3 / -2
Query: 378 VQRPP*RTSENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYDL 554
VQRPP*R SENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYDL
Sbjct: 362 VQRPP*RMSENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYDL 186
Score = 52.8 bits (109), Expect(4) = 1e-043
Identities = 19/21 (90%), Positives = 19/21 (90%)
Frame = +3 / -2
Query: 615 YADECSCGTDLHFSMDPPPLL 677
Y DECSCGTDLHFSMDPP LL
Sbjct: 125 YTDECSCGTDLHFSMDPPLLL 63
Score = 47.3 bits (97), Expect(4) = 6e-049
Identities = 18/19 (94%), Positives = 18/19 (94%)
Frame = -3 / +1
Query: 676 RRGGGSMEKCRSVPHEHSS 620
RR GGSMEKCRSVPHEHSS
Sbjct: 64 RRRGGSMEKCRSVPHEHSS 120
Score = 31.3 bits (62), Expect(4) = 6e-049
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2 / +1
Query: 353 ACNASYSYDRTHICVCTNH 297
ACN SYSY T+IC+ H
Sbjct: 385 ACNPSYSYSTTYICMIYIH 441
Score = 26.3 bits (51), Expect(4) = 6e-049
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1 / +2
Query: 318 YMCMHEPWCSYICNYICTRK 259
Y+ MHE I NYICT K
Sbjct: 431 YIYMHEYIMMLI*NYICTHK 490
Score = 24.0 bits (46), Expect(4) = 1e-043
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = +2 / -3
Query: 287 YEHHGSCIHIYV 322
YEHH +H+Y+
Sbjct: 466 YEHHDILMHVYI 431
Score = 22.6 bits (43), Expect(4) = 1e-043
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2 / -3
Query: 314 IYVCGRRSRMRCMQ 355
IY+ RSRM CMQ
Sbjct: 424 IYMWWSRSRMDCMQ 383
>gb|BE355700.1|BE355700 DG1_116_F03.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 501
Score = 147 bits (315), Expect(4) = 6e-049
Identities = 61/62 (98%), Positives = 62/62 (100%)
Frame = -3 / +2
Query: 562 QAGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDVRYGGL 383
QAGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSD+RYGGL
Sbjct: 170 QAGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDIRYGGL 349
Query: 382 *T 377
*T
Sbjct: 350 *T 355
Score = 134 bits (288), Expect(4) = 1e-043
Identities = 58/59 (98%), Positives = 58/59 (98%)
Frame = +3 / -1
Query: 378 VQRPP*RTSENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYDL 554
VQRPP*R SENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYDL
Sbjct: 354 VQRPP*RMSENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYDL 178
Score = 52.8 bits (109), Expect(4) = 1e-043
Identities = 19/21 (90%), Positives = 19/21 (90%)
Frame = +3 / -1
Query: 615 YADECSCGTDLHFSMDPPPLL 677
Y DECSCGTDLHFSMDPP LL
Sbjct: 117 YTDECSCGTDLHFSMDPPLLL 55
Score = 47.3 bits (97), Expect(4) = 6e-049
Identities = 18/19 (94%), Positives = 18/19 (94%)
Frame = -3 / +2
Query: 676 RRGGGSMEKCRSVPHEHSS 620
RR GGSMEKCRSVPHEHSS
Sbjct: 56 RRRGGSMEKCRSVPHEHSS 112
Score = 31.3 bits (62), Expect(4) = 6e-049
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2 / +2
Query: 353 ACNASYSYDRTHICVCTNH 297
ACN SYSY T+IC+ H
Sbjct: 377 ACNPSYSYSTTYICMIYIH 433
Score = 26.3 bits (51), Expect(4) = 6e-049
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1 / +3
Query: 318 YMCMHEPWCSYICNYICTRK 259
Y+ MHE I NYICT K
Sbjct: 423 YIYMHEYIMMLI*NYICTHK 482
Score = 24.0 bits (46), Expect(4) = 1e-043
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = +2 / -2
Query: 287 YEHHGSCIHIYV 322
YEHH +H+Y+
Sbjct: 458 YEHHDILMHVYI 423
Score = 22.6 bits (43), Expect(4) = 1e-043
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2 / -2
Query: 314 IYVCGRRSRMRCMQ 355
IY+ RSRM CMQ
Sbjct: 416 IYMWWSRSRMDCMQ 375
>gb|AW671712.1|AW671712 LG1_351_A08.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 482
Score = 147 bits (315), Expect(4) = 6e-049
Identities = 61/62 (98%), Positives = 62/62 (100%)
Frame = -3 / +1
Query: 562 QAGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDVRYGGL 383
QAGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSD+RYGGL
Sbjct: 157 QAGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDIRYGGL 336
Query: 382 *T 377
*T
Sbjct: 337 *T 342
Score = 134 bits (288), Expect(4) = 1e-043
Identities = 58/59 (98%), Positives = 58/59 (98%)
Frame = +3 / -1
Query: 378 VQRPP*RTSENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYDL 554
VQRPP*R SENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYDL
Sbjct: 341 VQRPP*RMSENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYDL 165
Score = 52.8 bits (109), Expect(4) = 1e-043
Identities = 19/21 (90%), Positives = 19/21 (90%)
Frame = +3 / -1
Query: 615 YADECSCGTDLHFSMDPPPLL 677
Y DECSCGTDLHFSMDPP LL
Sbjct: 104 YTDECSCGTDLHFSMDPPLLL 42
Score = 47.3 bits (97), Expect(4) = 6e-049
Identities = 18/19 (94%), Positives = 18/19 (94%)
Frame = -3 / +1
Query: 676 RRGGGSMEKCRSVPHEHSS 620
RR GGSMEKCRSVPHEHSS
Sbjct: 43 RRRGGSMEKCRSVPHEHSS 99
Score = 31.3 bits (62), Expect(4) = 6e-049
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2 / +1
Query: 353 ACNASYSYDRTHICVCTNH 297
ACN SYSY T+IC+ H
Sbjct: 364 ACNPSYSYSTTYICMIYIH 420
Score = 26.3 bits (51), Expect(4) = 6e-049
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1 / +2
Query: 318 YMCMHEPWCSYICNYICTRK 259
Y+ MHE I NYICT K
Sbjct: 410 YIYMHEYIMMLI*NYICTHK 469
Score = 24.0 bits (46), Expect(4) = 1e-043
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = +2 / -2
Query: 287 YEHHGSCIHIYV 322
YEHH +H+Y+
Sbjct: 445 YEHHDILMHVYI 410
Score = 22.6 bits (43), Expect(4) = 1e-043
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2 / -2
Query: 314 IYVCGRRSRMRCMQ 355
IY+ RSRM CMQ
Sbjct: 403 IYMWWSRSRMDCMQ 362
>gb|AW746433.1|AW746433 WS1_53_G05.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 458
Score = 147 bits (315), Expect(4) = 6e-049
Identities = 61/62 (98%), Positives = 62/62 (100%)
Frame = -3 / +2
Query: 562 QAGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDVRYGGL 383
QAGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSD+RYGGL
Sbjct: 137 QAGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDIRYGGL 316
Query: 382 *T 377
*T
Sbjct: 317 *T 322
Score = 134 bits (288), Expect(4) = 1e-043
Identities = 58/59 (98%), Positives = 58/59 (98%)
Frame = +3 / -3
Query: 378 VQRPP*RTSENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYDL 554
VQRPP*R SENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYDL
Sbjct: 321 VQRPP*RMSENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYDL 145
Score = 52.8 bits (109), Expect(4) = 1e-043
Identities = 19/21 (90%), Positives = 19/21 (90%)
Frame = +3 / -3
Query: 615 YADECSCGTDLHFSMDPPPLL 677
Y DECSCGTDLHFSMDPP LL
Sbjct: 84 YTDECSCGTDLHFSMDPPLLL 22
Score = 47.3 bits (97), Expect(4) = 6e-049
Identities = 18/19 (94%), Positives = 18/19 (94%)
Frame = -3 / +2
Query: 676 RRGGGSMEKCRSVPHEHSS 620
RR GGSMEKCRSVPHEHSS
Sbjct: 23 RRRGGSMEKCRSVPHEHSS 79
Score = 31.3 bits (62), Expect(4) = 6e-049
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2 / +2
Query: 353 ACNASYSYDRTHICVCTNH 297
ACN SYSY T+IC+ H
Sbjct: 344 ACNPSYSYSTTYICMIYIH 400
Score = 26.3 bits (51), Expect(4) = 6e-049
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1 / +3
Query: 318 YMCMHEPWCSYICNYICTRK 259
Y+ MHE I NYICT K
Sbjct: 390 YIYMHEYIMMLI*NYICTHK 449
Score = 24.0 bits (46), Expect(4) = 1e-043
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = +2 / -1
Query: 287 YEHHGSCIHIYV 322
YEHH +H+Y+
Sbjct: 425 YEHHDILMHVYI 390
Score = 22.6 bits (43), Expect(4) = 1e-043
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2 / -1
Query: 314 IYVCGRRSRMRCMQ 355
IY+ RSRM CMQ
Sbjct: 383 IYMWWSRSRMDCMQ 342
>gb|BE359416.1|BE359416 DG1_40_A11.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 662
Score = 147 bits (315), Expect(6) = 8e-049
Identities = 61/62 (98%), Positives = 62/62 (100%)
Frame = -3 / +2
Query: 562 QAGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDVRYGGL 383
QAGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSD+RYGGL
Sbjct: 77 QAGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDIRYGGL 256
Query: 382 *T 377
*T
Sbjct: 257 *T 262
Score = 134 bits (288), Expect(5) = 4e-042
Identities = 58/59 (98%), Positives = 58/59 (98%)
Frame = +3 / -3
Query: 378 VQRPP*RTSENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYDL 554
VQRPP*R SENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYDL
Sbjct: 261 VQRPP*RMSENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYDL 85
Score = 34.1 bits (68), Expect(5) = 4e-042
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1 / -1
Query: 106 KANRENTLTDLESSHEHMQ*LETIHTQFIHAHVH 207
KAN ++T + +H ++ HTQFIHAH+H
Sbjct: 578 KAN*KHTGRSGKQAHSDLRPTMHTHTQFIHAHMH 477
Score = 31.3 bits (62), Expect(6) = 8e-049
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2 / +2
Query: 353 ACNASYSYDRTHICVCTNH 297
ACN SYSY T+IC+ H
Sbjct: 284 ACNPSYSYSTTYICMIYIH 340
Score = 29.5 bits (58), Expect(6) = 8e-049
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2 / +1
Query: 248 AKLNSCCVYILLLLCTCA 195
AKLNSCC+YI C A
Sbjct: 415 AKLNSCCIYIWRQYCVHA 468
Score = 29.5 bits (58), Expect(5) = 4e-042
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +2 / -2
Query: 197 HMYTVVVVYIRSSYLAW 247
H++++ +YI SSYLAW
Sbjct: 466 HVHSIASIYICSSYLAW 416
Score = 28.1 bits (55), Expect(6) = 8e-049
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3 / +1
Query: 184 VCVWSQVTACVRGCFPDRSVCF 119
VCV + CFPDR VCF
Sbjct: 502 VCVCMVGLKSLCACFPDRPVCF 567
Score = 26.3 bits (51), Expect(6) = 8e-049
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1 / +3
Query: 318 YMCMHEPWCSYICNYICTRK 259
Y+ MHE I NYICT K
Sbjct: 330 YIYMHEYIMMLI*NYICTHK 389
Score = 24.0 bits (46), Expect(5) = 4e-042
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3 / -3
Query: 615 YADECSCG 638
Y DECSCG
Sbjct: 24 YTDECSCG 1
Score = 24.0 bits (46), Expect(6) = 8e-049
Identities = 7/10 (70%), Positives = 10/10 (100%)
Frame = -1 / +3
Query: 207 VYMCVYELCV 178
+++CVYELCV
Sbjct: 477 MHVCVYELCV 506
Score = 24.0 bits (46), Expect(5) = 4e-042
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = +2 / -1
Query: 287 YEHHGSCIHIYV 322
YEHH +H+Y+
Sbjct: 365 YEHHDILMHVYI 330
>gb|CX610851.1|CX610851 ANR1_21_E04.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_21_E04_A002 3', mRNA sequence
Length = 648
Score = 139 bits (299), Expect(6) = 2e-046
Identities = 58/62 (93%), Positives = 59/62 (95%)
Frame = -3 / +1
Query: 562 QAGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDVRYGGL 383
QAGKSYSFNGPSGRDDPE KRR RVAAYNVFATQGRIKTTVRSSVKW KSKFSD+RYGGL
Sbjct: 49 QAGKSYSFNGPSGRDDPEEKRRPRVAAYNVFATQGRIKTTVRSSVKWFKSKFSDIRYGGL 228
Query: 382 *T 377
*T
Sbjct: 229 *T 234
Score = 128 bits (275), Expect(4) = 2e-038
Identities = 55/59 (93%), Positives = 57/59 (96%)
Frame = +3 / -2
Query: 378 VQRPP*RTSENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYDL 554
VQRPP*R SENLDL+HLTLLRTVVLIRPCVANTLYAATR RRF+SGSSRPLGPLKLYDL
Sbjct: 233 VQRPP*RMSENLDLNHLTLLRTVVLIRPCVANTLYAATRGRRFSSGSSRPLGPLKLYDL 57
Score = 34.1 bits (68), Expect(4) = 2e-038
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1 / -3
Query: 106 KANRENTLTDLESSHEHMQ*LETIHTQFIHAHVH 207
KAN ++T + +H ++ HTQFIHAH+H
Sbjct: 550 KAN*KHTGRSGKQAHSDLRPTMHTHTQFIHAHMH 449
Score = 29.9 bits (59), Expect(6) = 2e-046
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2 / +1
Query: 353 ACNASYSYDRTHICVCTNH 297
ACN +YSY T+IC+ H
Sbjct: 256 ACNPTYSYSTTYICMIYIH 312
Score = 29.5 bits (58), Expect(6) = 2e-046
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2 / +3
Query: 248 AKLNSCCVYILLLLCTCA 195
AKLNSCC+YI C A
Sbjct: 387 AKLNSCCIYIWRQYCVHA 440
Score = 29.5 bits (58), Expect(4) = 2e-038
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +2 / -1
Query: 197 HMYTVVVVYIRSSYLAW 247
H++++ +YI SSYLAW
Sbjct: 438 HVHSIASIYICSSYLAW 388
Score = 28.1 bits (55), Expect(6) = 2e-046
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3 / +3
Query: 184 VCVWSQVTACVRGCFPDRSVCF 119
VCV + CFPDR VCF
Sbjct: 474 VCVCMVGLKSLCACFPDRPVCF 539
Score = 26.3 bits (51), Expect(6) = 2e-046
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1 / +2
Query: 318 YMCMHEPWCSYICNYICTRK 259
Y+ MHE I NYICT K
Sbjct: 302 YIYMHEYIMMLI*NYICTHK 361
Score = 24.0 bits (46), Expect(6) = 2e-046
Identities = 7/10 (70%), Positives = 10/10 (100%)
Frame = -1 / +2
Query: 207 VYMCVYELCV 178
+++CVYELCV
Sbjct: 449 MHVCVYELCV 478
Score = 24.0 bits (46), Expect(4) = 2e-038
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = +2 / -3
Query: 287 YEHHGSCIHIYV 322
YEHH +H+Y+
Sbjct: 337 YEHHDILMHVYI 302
>gb|AW671793.1|AW671793 LG1_351_A08.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 569
Score = 83.1 bits (175), Expect(6) = 1e-030
Identities = 34/35 (97%), Positives = 35/35 (100%)
Frame = -3 / +3
Query: 481 YNVFATQGRIKTTVRSSVKWLKSKFSDVRYGGL*T 377
YNVFATQGRIKTTVRSSVKWLKSKFSD+RYGGL*T
Sbjct: 3 YNVFATQGRIKTTVRSSVKWLKSKFSDIRYGGL*T 107
Score = 79.9 bits (168), Expect(5) = 7e-026
Identities = 34/35 (97%), Positives = 34/35 (97%)
Frame = +3 / -2
Query: 378 VQRPP*RTSENLDLSHLTLLRTVVLIRPCVANTLY 482
VQRPP*R SENLDLSHLTLLRTVVLIRPCVANTLY
Sbjct: 106 VQRPP*RMSENLDLSHLTLLRTVVLIRPCVANTLY 2
Score = 34.1 bits (68), Expect(5) = 7e-026
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1 / -3
Query: 106 KANRENTLTDLESSHEHMQ*LETIHTQFIHAHVH 207
KAN ++T + +H ++ HTQFIHAH+H
Sbjct: 423 KAN*KHTGRSGKQAHSDLRPTMHTHTQFIHAHMH 322
Score = 31.3 bits (62), Expect(6) = 1e-030
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2 / +3
Query: 353 ACNASYSYDRTHICVCTNH 297
ACN SYSY T+IC+ H
Sbjct: 129 ACNPSYSYSTTYICMIYIH 185
Score = 29.5 bits (58), Expect(6) = 1e-030
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2 / +2
Query: 248 AKLNSCCVYILLLLCTCA 195
AKLNSCC+YI C A
Sbjct: 260 AKLNSCCIYIWRQYCVHA 313
Score = 29.5 bits (58), Expect(5) = 7e-026
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +2 / -1
Query: 197 HMYTVVVVYIRSSYLAW 247
H++++ +YI SSYLAW
Sbjct: 311 HVHSIASIYICSSYLAW 261
Score = 28.1 bits (55), Expect(6) = 1e-030
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3 / +2
Query: 184 VCVWSQVTACVRGCFPDRSVCF 119
VCV + CFPDR VCF
Sbjct: 347 VCVCMVGLKSLCACFPDRPVCF 412
Score = 26.3 bits (51), Expect(6) = 1e-030
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1 / +1
Query: 318 YMCMHEPWCSYICNYICTRK 259
Y+ MHE I NYICT K
Sbjct: 175 YIYMHEYIMMLI*NYICTHK 234
Score = 24.0 bits (46), Expect(5) = 7e-026
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = +2 / -3
Query: 287 YEHHGSCIHIYV 322
YEHH +H+Y+
Sbjct: 210 YEHHDILMHVYI 175
Score = 24.0 bits (46), Expect(6) = 1e-030
Identities = 7/10 (70%), Positives = 10/10 (100%)
Frame = -1 / +1
Query: 207 VYMCVYELCV 178
+++CVYELCV
Sbjct: 322 MHVCVYELCV 351
Score = 22.6 bits (43), Expect(5) = 7e-026
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2 / -3
Query: 314 IYVCGRRSRMRCMQ 355
IY+ RSRM CMQ
Sbjct: 168 IYMWWSRSRMDCMQ 127
>gb|CW456197.1|CW456197 fsbb001f201h01f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f201h01, DNA
sequence
Length = 764
Score = 104 bits (222), Expect(2) = 6e-030
Identities = 44/45 (97%), Positives = 44/45 (97%)
Frame = -3 / +3
Query: 562 QAGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSV 428
QAGKSYSFNGPSGRDDPEA RRRRVAAYNVFATQGRIKTTVRSSV
Sbjct: 630 QAGKSYSFNGPSGRDDPEAXRRRRVAAYNVFATQGRIKTTVRSSV 764
Score = 99.1 bits (210), Expect(2) = 6e-030
Identities = 42/42 (100%), Positives = 42/42 (100%)
Frame = +3 / -2
Query: 429 TLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYDL 554
TLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYDL
Sbjct: 763 TLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYDL 638
Score = 52.8 bits (109), Expect(2) = 6e-030
Identities = 19/21 (90%), Positives = 19/21 (90%)
Frame = +3 / -2
Query: 615 YADECSCGTDLHFSMDPPPLL 677
Y DECSCGTDLHFSMDPP LL
Sbjct: 577 YTDECSCGTDLHFSMDPPLLL 515
Score = 47.3 bits (97), Expect(2) = 6e-030
Identities = 18/19 (94%), Positives = 18/19 (94%)
Frame = -3 / +3
Query: 676 RRGGGSMEKCRSVPHEHSS 620
RR GGSMEKCRSVPHEHSS
Sbjct: 516 RRRGGSMEKCRSVPHEHSS 572
>gb|AW746506.1|AW746506 WS1_53_G05.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 466
Score = 77.1 bits (162), Expect(5) = 1e-025
Identities = 32/33 (96%), Positives = 33/33 (100%)
Frame = -3 / +1
Query: 475 VFATQGRIKTTVRSSVKWLKSKFSDVRYGGL*T 377
VFATQGRIKTTVRSSVKWLKSKFSD+RYGGL*T
Sbjct: 1 VFATQGRIKTTVRSSVKWLKSKFSDIRYGGL*T 99
Score = 72.5 bits (152), Expect(5) = 8e-023
Identities = 31/32 (96%), Positives = 31/32 (96%)
Frame = +3 / -3
Query: 378 VQRPP*RTSENLDLSHLTLLRTVVLIRPCVAN 473
VQRPP*R SENLDLSHLTLLRTVVLIRPCVAN
Sbjct: 98 VQRPP*RMSENLDLSHLTLLRTVVLIRPCVAN 3
Score = 31.3 bits (62), Expect(5) = 1e-025
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2 / +1
Query: 353 ACNASYSYDRTHICVCTNH 297
ACN SYSY T+IC+ H
Sbjct: 121 ACNPSYSYSTTYICMIYIH 177
Score = 29.9 bits (59), Expect(5) = 8e-023
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1 / -1
Query: 139 ESSHEHMQ*LETIHTQFIHAHVH 207
+ +H ++ HTQFIHAH+H
Sbjct: 382 KQAHSDLRPTMHTHTQFIHAHMH 314
Score = 29.5 bits (58), Expect(5) = 1e-025
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2 / +3
Query: 248 AKLNSCCVYILLLLCTCA 195
AKLNSCC+YI C A
Sbjct: 252 AKLNSCCIYIWRQYCVHA 305
Score = 29.5 bits (58), Expect(5) = 8e-023
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +2 / -2
Query: 197 HMYTVVVVYIRSSYLAW 247
H++++ +YI SSYLAW
Sbjct: 303 HVHSIASIYICSSYLAW 253
Score = 26.3 bits (51), Expect(5) = 1e-025
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1 / +2
Query: 318 YMCMHEPWCSYICNYICTRK 259
Y+ MHE I NYICT K
Sbjct: 167 YIYMHEYIMMLI*NYICTHK 226
Score = 24.0 bits (46), Expect(5) = 1e-025
Identities = 7/10 (70%), Positives = 10/10 (100%)
Frame = -1 / +2
Query: 207 VYMCVYELCV 178
+++CVYELCV
Sbjct: 314 MHVCVYELCV 343
Score = 24.0 bits (46), Expect(5) = 8e-023
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = +2 / -1
Query: 287 YEHHGSCIHIYV 322
YEHH +H+Y+
Sbjct: 202 YEHHDILMHVYI 167
Score = 22.6 bits (43), Expect(5) = 8e-023
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2 / -1
Query: 314 IYVCGRRSRMRCMQ 355
IY+ RSRM CMQ
Sbjct: 160 IYMWWSRSRMDCMQ 119
>gb|AI724444.1|AI724444 RHIZ1_36_G08.y2_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 431
Score = 82.2 bits (173), Expect(4) = 1e-024
Identities = 35/38 (92%), Positives = 36/38 (94%)
Frame = -3 / +2
Query: 490 VAAYNVFATQGRIKTTVRSSVKWLKSKFSDVRYGGL*T 377
V A NVFATQGRIKTTVRSSVKWLKSKFSD+RYGGL*T
Sbjct: 2 VPASNVFATQGRIKTTVRSSVKWLKSKFSDIRYGGL*T 115
Score = 79.4 bits (167), Expect(4) = 5e-022
Identities = 35/38 (92%), Positives = 35/38 (92%)
Frame = +3 / -3
Query: 378 VQRPP*RTSENLDLSHLTLLRTVVLIRPCVANTLYAAT 491
VQRPP*R SENLDLSHLTLLRTVVLIRPCVANTL A T
Sbjct: 114 VQRPP*RMSENLDLSHLTLLRTVVLIRPCVANTLDAGT 1
Score = 35.9 bits (72), Expect(4) = 1e-024
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -1 / +3
Query: 324 HTYMCMHEPWCSYICNYICTRKLYAC 247
+ Y+ MHE I NYICT KLY C
Sbjct: 204 YIYIYMHEYIMMLI*NYICTHKLYVC 281
Score = 29.0 bits (57), Expect(4) = 5e-022
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2 / -2
Query: 248 HAYSLRVHI*LHIYEHHGSCIHIYV 322
H Y+L VH+* H+ SC++IY+
Sbjct: 280 HTYNLCVHM*FHMSIMIYSCMYIYI 206
Score = 28.1 bits (55), Expect(4) = 5e-022
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +1 / -1
Query: 172 TIHTQFIHAHV 204
T+HTQFIHAH+
Sbjct: 401 TMHTQFIHAHM 369
Score = 27.6 bits (54), Expect(4) = 1e-024
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1 / +3
Query: 204 YMCVYELCVYGLKSLHV 154
++CVYELCV+G + V
Sbjct: 369 HVCVYELCVHGWSQVTV 419
Score = 23.5 bits (45), Expect(4) = 1e-024
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1 / +1
Query: 246 QAK*LLRIYTTTTVYMCVYEL 184
QAK*LL IY + CV+ +
Sbjct: 298 QAK*LLHIYMEALLCYCVHAM 360
Score = 23.5 bits (45), Expect(4) = 5e-022
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +3 / -2
Query: 219 YIYAAAI*LG 248
YIYAAAI*LG
Sbjct: 325 YIYAAAI*LG 296
>gb|AW284788.1|AW284788 LG1_278_A02.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 484
Score = 54.7 bits (113), Expect(6) = 6e-023
Identities = 22/23 (95%), Positives = 23/23 (100%)
Frame = -3 / +2
Query: 445 TVRSSVKWLKSKFSDVRYGGL*T 377
TVRSSVKWLKSKFSD+RYGGL*T
Sbjct: 2 TVRSSVKWLKSKFSDIRYGGL*T 70
Score = 31.3 bits (62), Expect(6) = 6e-023
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2 / +2
Query: 353 ACNASYSYDRTHICVCTNH 297
ACN SYSY T+IC+ H
Sbjct: 92 ACNPSYSYSTTYICMIYIH 148
Score = 29.5 bits (58), Expect(6) = 6e-023
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2 / +1
Query: 248 AKLNSCCVYILLLLCTCA 195
AKLNSCC+YI C A
Sbjct: 223 AKLNSCCIYIWRQYCVHA 276
Score = 28.1 bits (55), Expect(6) = 6e-023
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3 / +1
Query: 184 VCVWSQVTACVRGCFPDRSVCF 119
VCV + CFPDR VCF
Sbjct: 310 VCVCMVGLKSLCACFPDRPVCF 375
Score = 26.3 bits (51), Expect(6) = 6e-023
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1 / +3
Query: 318 YMCMHEPWCSYICNYICTRK 259
Y+ MHE I NYICT K
Sbjct: 138 YIYMHEYIMMLI*NYICTHK 197
Score = 24.0 bits (46), Expect(6) = 6e-023
Identities = 7/10 (70%), Positives = 10/10 (100%)
Frame = -1 / +3
Query: 207 VYMCVYELCV 178
+++CVYELCV
Sbjct: 285 MHVCVYELCV 314
>gb|BG049334.1|BG049334 OV1_18_F04.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 411
Score = 48.3 bits (99), Expect(6) = 2e-021
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = -3 / +1
Query: 436 SSVKWLKSKFSDVRYGGL*T 377
SSVKWLKSKFSD+RYGGL*T
Sbjct: 10 SSVKWLKSKFSDIRYGGL*T 69
Score = 31.3 bits (62), Expect(6) = 2e-021
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2 / +1
Query: 353 ACNASYSYDRTHICVCTNH 297
ACN SYSY T+IC+ H
Sbjct: 91 ACNPSYSYSTTYICMIYIH 147
Score = 29.5 bits (58), Expect(6) = 2e-021
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2 / +3
Query: 248 AKLNSCCVYILLLLCTCA 195
AKLNSCC+YI C A
Sbjct: 222 AKLNSCCIYIWRQYCVHA 275
Score = 28.1 bits (55), Expect(6) = 2e-021
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3 / +3
Query: 184 VCVWSQVTACVRGCFPDRSVCF 119
VCV + CFPDR VCF
Sbjct: 309 VCVCMVGLKSLCACFPDRPVCF 374
Score = 26.3 bits (51), Expect(6) = 2e-021
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1 / +2
Query: 318 YMCMHEPWCSYICNYICTRK 259
Y+ MHE I NYICT K
Sbjct: 137 YIYMHEYIMMLI*NYICTHK 196
Score = 24.0 bits (46), Expect(6) = 2e-021
Identities = 7/10 (70%), Positives = 10/10 (100%)
Frame = -1 / +2
Query: 207 VYMCVYELCV 178
+++CVYELCV
Sbjct: 284 MHVCVYELCV 313
>gb|BG240160.1|BG240160 OV1_18_F04.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 463
Score = 48.3 bits (99), Expect(6) = 3e-021
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = -3 / +1
Query: 436 SSVKWLKSKFSDVRYGGL*T 377
SSVKWLKSKFSD+RYGGL*T
Sbjct: 10 SSVKWLKSKFSDIRYGGL*T 69
Score = 31.3 bits (62), Expect(6) = 3e-021
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2 / +1
Query: 353 ACNASYSYDRTHICVCTNH 297
ACN SYSY T+IC+ H
Sbjct: 91 ACNPSYSYSTTYICMIYIH 147
Score = 29.5 bits (58), Expect(6) = 3e-021
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2 / +3
Query: 248 AKLNSCCVYILLLLCTCA 195
AKLNSCC+YI C A
Sbjct: 222 AKLNSCCIYIWRQYCVHA 275
Score = 28.1 bits (55), Expect(6) = 3e-021
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3 / +3
Query: 184 VCVWSQVTACVRGCFPDRSVCF 119
VCV + CFPDR VCF
Sbjct: 309 VCVCMVGLKSLCACFPDRPVCF 374
Score = 26.3 bits (51), Expect(6) = 3e-021
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1 / +2
Query: 318 YMCMHEPWCSYICNYICTRK 259
Y+ MHE I NYICT K
Sbjct: 137 YIYMHEYIMMLI*NYICTHK 196
Score = 24.0 bits (46), Expect(6) = 3e-021
Identities = 7/10 (70%), Positives = 10/10 (100%)
Frame = -1 / +2
Query: 207 VYMCVYELCV 178
+++CVYELCV
Sbjct: 284 MHVCVYELCV 313
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 723,639,247
Number of Sequences: 832831
Number of extensions: 10232020
Number of successful extensions: 128788
Number of sequences better than 1.0e-020: 20
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 20673580668
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)