TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5704661.2.1
(798 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN140420.1|CN140420 OX1_36_B10.b1_A002 Oxidatively-stres... 331 6e-090
gb|CN149194.1|CN149194 WOUND1_61_F10.b1_A002 Wounded leaves... 314 1e-084
gb|BM329584.1|BM329584 PIC1_40_E09.g1_A002 Pathogen-infecte... 287 1e-082
gb|CF487333.1|CF487333 POL1_43_D11.b1_A002 Pollen Sorghum b... 243 3e-063
gb|CN127460.1|CN127460 RHOH1_23_D06.b1_A002 Acid- and alkal... 238 6e-062
gb|BZ695088.1|BZ695088 SP__Ba0057N21.r SP__Ba Sorghum propi... 235 8e-061
gb|CW789437.1|CW789437 SP__Ba0057N21.r SP__Ba Sorghum propi... 233 3e-060
gb|CW144377.1|CW144377 104_536_11137911_148_34962_056 Sorgh... 159 6e-059
gb|CW306008.1|CW306008 104_791_11466607_148_36273_024 Sorgh... 127 2e-057
gb|BI139893.1|BI139893 IP1_47_A12.b1_A002 Immature pannicle... 108 5e-057
gb|CX612893.1|CX612893 GABR1_5_C04.b1_A002 GA- or brassinol... 221 8e-057
gb|CF070980.1|CF070980 FE1_14_F12.g1_A002 Iron-deficient se... 215 5e-055
gb|CW031244.1|CW031244 104_259_10500694_114_30397 Sorghum m... 205 5e-052
gb|BF587532.1|BF587532 FM1_37_E11.g1_A003 Floral-Induced Me... 205 7e-052
gb|BG101797.1|BG101797 RHIZ2_22_E09.g1_A003 Rhizome2 (RHIZ2... 188 7e-047
gb|CD234655.1|CD234655 SS1_17_C07.b1_A012 Salt-stressed see... 175 9e-043
gb|BM331533.1|BM331533 PIC1_72_D10.g1_A002 Pathogen-infecte... 170 3e-041
gb|CW068742.1|CW068742 104_317_10525284_1_30096 Sorghum met... 160 2e-038
gb|AC169370.3| Sorghum bicolor clone SB_BBc0011I20, WORKING... 97 4e-037
gb|CW158441.1|CW158441 104_564_11148823_148_36396_028 Sorgh... 155 1e-036
gb|CW229988.1|CW229988 104_671_11207609_148_37265_071 Sorgh... 155 1e-036
gb|CW285991.1|CW285991 104_763_11410641_116_35511_039 Sorgh... 152 5e-036
gb|CL193723.1|CL193723 104_417_10941134_116_32279_053 Sorgh... 132 1e-035
gb|BI212063.1|BI212063 IP1_61_B03.g1_A002 Immature pannicle... 97 6e-032
gb|CW388065.1|CW388065 fsbb001f072k16k0 Sorghum methylation... 99 1e-031
gb|CW381875.1|CW381875 fsbb001f063h19k0 Sorghum methylation... 135 9e-031
gb|CW285992.1|CW285992 104_763_11410641_148_35507_039 Sorgh... 123 3e-027
gb|CD210962.1|CD210962 HS1_58_B05.b1_A012 Heat-shocked seed... 97 1e-026
gb|CF482490.1|CF482490 POL1_7_F08.b1_A002 Pollen Sorghum bi... 120 3e-026
gb|CW354779.1|CW354779 fsbb001f019c05k0 Sorghum methylation... 116 3e-025
gb|CW374401.1|CW374401 fsbb001f051e01f0 Sorghum methylation... 72 3e-025
gb|CL158361.1|CL158361 104_347_10803488_116_31378_080 Sorgh... 115 8e-025
gb|CF480371.1|CF480371 POL1_65_H05.b1_A002 Pollen Sorghum b... 112 5e-024
gb|CL158360.1|CL158360 104_347_10803488_114_31377_080 Sorgh... 111 1e-023
gb|BI139892.1|BI139892 IP1_47_A11.b1_A002 Immature pannicle... 67 2e-023
gb|CF485968.1|CF485968 POL1_34_H03.g1_A002 Pollen Sorghum b... 106 3e-022
gb|CW037385.1|CW037385 104_269_10504310_115_30384 Sorghum m... 81 4e-022
gb|CL197598.1|CL197598 104_424_10943847_114_32384_054 Sorgh... 102 8e-021
>gb|CN140420.1|CN140420 OX1_36_B10.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_36_B10_A002 3', mRNA sequence
Length = 836
Score = 331 bits (718), Expect = 6e-090
Identities = 122/190 (64%), Positives = 156/190 (82%)
Frame = -2 / +3
Query: 788 RPGRYLSILNHLRFYLPEMHPKLDKMVFLDDDIVVKKDLAGLWSINMKGKVNGAVETCGE 609
R +YLS+LNHLRFYLPEM+PKL +++FLDDD+VV++DL GLW I+M GKVNGAVETC
Sbjct: 36 RNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQRDLTGLWKIDMDGKVNGAVETCFG 215
Query: 608 SFHRYDRYLNFSNPIITKSFDPHACVWAFGMNVFDLAEWRRQNITEIYHSWQKLNEDRSL 429
SFHRY +Y+NFS+P+I F+P+AC WA+GMN FDL WRR+ TE YH WQ NE+R+L
Sbjct: 216 SFHRYAQYMNFSHPLIKAKFNPNACGWAYGMNFFDLDSWRREKCTEQYHYWQNQNENRTL 395
Query: 428 WKLGTLPLCLVTFWNKTFPLSRSWHVLGLGYNPHVNSRDIEHAAVIHYNGNMKPWLEIGL 249
WKLGTLP L+TF++ T PL +SWHVLGLGYNP ++ +I +AAV+H+NGNMKPWL+IG+
Sbjct: 396 WKLGTLPPGLITFYSTTKPLEKSWHVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGM 575
Query: 248 PKFRSYWSKY 219
+FR W+KY
Sbjct: 576 NQFRHLWTKY 605
Score = 163 bits (351), Expect = 3e-039
Identities = 91/179 (50%), Positives = 101/179 (56%)
Frame = +1 / -2
Query: 205 WS*SRYLDQ*LRNLGRPISNQGFMLPL*CMTAACSMSLLLTWGL*PRPRTCHDRLRGNVL 384
WS Y Q N P+S+QGFMLPL C TAA +S +L GL P PRTC D RG V+
Sbjct: 619 WSLQLYFVQRCLNWFIPMSSQGFMLPLKCTTAAFLISSMLMLGLYPSPRTCQDFSRGFVV 440
Query: 385 FQNVTKHKGRVPSFQSDLSSLSFCHE**ISVMFCRLHSARSNTFIPKAQTQACGSKLLVI 564
V K G VPSF + S FC SV F L +RS FIP AQ QA G +I
Sbjct: 439 E*KVIKPGGSVPSFHNVRFSF*FCQ*WYCSVHFSLLQESRSKKFIPYAQPQALGLNFALI 260
Query: 565 MGFEKFRYRS*RWKLSPQVSTAPFTFPFMLIDQRPARSFFTTMSSSRKTILSSFGCISG 741
G EKF Y + R K VSTAPFTFP M I Q P RS TT SSSRK + SFG ISG
Sbjct: 259 RGCEKFIYCAYR*KDPKHVSTAPFTFPSMSIFQSPVRSLCTTTSSSRKRMRCSFGYISG 83
Score = 99.1 bits (210), Expect(2) = 3e-028
Identities = 39/113 (34%), Positives = 75/113 (66%)
Frame = +3 / -1
Query: 438 IFIKLLPRVINFSYVLPPPFSQVKHIHSKSPNTSMWVKTLGDNGI*KIQVSIIAMETLST 617
+ + +LP ++ S +LPPP ++K IHS P T + +K D G+*+I + I+M+
Sbjct: 386 VLVLILPIMVLLSTLLPPPRIKIKEIHSVCPTTGIRIKLCFDKGV*EIHILCISMKRSKA 207
Query: 618 SLNSTVYLPLHVD*PKASQILLYYDVIIKKDHLVKLWMHLR*VKAEMIED*QV 776
++LP+HV+ P++S+I LY+++II++ + V LW+HLR +++++I+ Q+
Sbjct: 206 CFYCPIHLPIHVNLPESSKIPLYHNIIIQEKNAV*LWVHLRQIESQVIKHRQI 48
Score = 47.3 bits (97), Expect(2) = 3e-028
Identities = 21/47 (44%), Positives = 33/47 (70%)
Frame = +3 / -1
Query: 219 ILGPVAPKLG*TNLQPGLHVAIVMYDCSMLNVSAVNMGIVT*TKNMP 359
+L P P+L T+++PGLHVAI M++ S+ N+ + IV+ +KNMP
Sbjct: 605 VLCPKVPELVHTDVKPGLHVAIEMHNSSISNLLHADAWIVSKSKNMP 465
>gb|CN149194.1|CN149194 WOUND1_61_F10.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_61_F10_A002 3', mRNA sequence
Length = 807
Score = 314 bits (680), Expect = 1e-084
Identities = 113/181 (62%), Positives = 147/181 (81%)
Frame = -2 / +2
Query: 716 KMVFLDDDIVVKKDLAGLWSINMKGKVNGAVETCGESFHRYDRYLNFSNPIITKSFDPHA 537
+++FLDDD+VV++DL GLW I+M GKVNGAVETC SFHRY +Y+NFS+P+I F+P+A
Sbjct: 5 RILFLDDDVVVQRDLTGLWKIDMDGKVNGAVETCFGSFHRYAQYMNFSHPLIKAKFNPNA 184
Query: 536 CVWAFGMNVFDLAEWRRQNITEIYHSWQKLNEDRSLWKLGTLPLCLVTFWNKTFPLSRSW 357
C WA+GMN FDL WRR+ TE YH WQ NE+R+LWKLGTLP L+TF++ T PL RSW
Sbjct: 185 CGWAYGMNFFDLDSWRREKCTEQYHYWQNQNENRTLWKLGTLPPGLITFYSTTKPLERSW 364
Query: 356 HVLGLGYNPHVNSRDIEHAAVIHYNGNMKPWLEIGLPKFRSYWSKYLDYDQSFLRECNIN 177
HVLGLGYNP ++ +I +AAV+H+NGNMKPWL+IG+ +FR W+KY+DYD S++R+CN
Sbjct: 365 HVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQCNFA 544
Query: 176 P 174
P
Sbjct: 545 P 547
Score = 158 bits (340), Expect = 8e-038
Identities = 91/181 (50%), Positives = 101/181 (55%)
Frame = +1 / -1
Query: 166 FLHGLMLHSRRKDWS*SRYLDQ*LRNLGRPISNQGFMLPL*CMTAACSMSLLLTWGL*PR 345
F G LH R + S*S Y Q N P+S+QGFMLPL C TAA +S +L GL P
Sbjct: 555 FYGGAKLH*RIYESS*STYFVQRCLNWFIPMSSQGFMLPLKCTTAAFLISSMLMLGLYPS 376
Query: 346 PRTCHDRLRGNVLFQNVTKHKGRVPSFQSDLSSLSFCHE**ISVMFCRLHSARSNTFIPK 525
PRTC D RG V+ V K G VPSF + S FC SV F L +RS FIP
Sbjct: 375 PRTCQDLSRGFVVE*KVIKPGGSVPSFHNVRFSF*FCQ*WYCSVHFSLLQESRSKKFIPY 196
Query: 526 AQTQACGSKLLVIMGFEKFRYRS*RWKLSPQVSTAPFTFPFMLIDQRPARSFFTTMSSSR 705
AQ QA G +I G EKF Y + R K VSTAPFTFP M I Q P RS TT SSSR
Sbjct: 195 AQPQALGLNFALIRGCEKFIYCAYR*KDPKHVSTAPFTFPSMSIFQSPVRSLCTTTSSSR 16
Query: 706 K 708
K
Sbjct: 15 K 13
Score = 80.3 bits (169), Expect(2) = 1e-025
Identities = 32/94 (34%), Positives = 60/94 (63%)
Frame = +3 / -3
Query: 438 IFIKLLPRVINFSYVLPPPFSQVKHIHSKSPNTSMWVKTLGDNGI*KIQVSIIAMETLST 617
+ + +LP ++ S +LPPP ++K IHS P T + +K D G+*+I + I+M+
Sbjct: 283 VLVLILPIMVLLSTLLPPPRIKIKEIHSVCPTTGIRIKLCFDKGV*EIHILCISMKRSKA 104
Query: 618 SLNSTVYLPLHVD*PKASQILLYYDVIIKKDHLV 719
++LP+HV+ P++S+I LY+++II++ + V
Sbjct: 103 CFYCPIHLPIHVNLPESSKIPLYHNIIIQEKNAV 2
Score = 57.4 bits (119), Expect(2) = 1e-025
Identities = 24/62 (38%), Positives = 41/62 (66%)
Frame = +3 / -3
Query: 174 WIDVAFPKERLVIIQILGPVAPKLG*TNLQPGLHVAIVMYDCSMLNVSAVNMGIVT*TKN 353
W ++A ++I+ +L P P+L T+++PGLHVAI M++ S+ N+ + IV+ +KN
Sbjct: 547 WCEIALTNI*VIIVHVLCPKVPELVHTDVKPGLHVAIEMHNSSISNLLHADAWIVSKSKN 368
Query: 354 MP 359
MP
Sbjct: 367 MP 362
>gb|BM329584.1|BM329584 PIC1_40_E09.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 628
Score = 287 bits (621), Expect(2) = 1e-082
Identities = 115/125 (92%), Positives = 119/125 (95%)
Frame = -2 / +3
Query: 455 QKLNEDRSLWKLGTLPLCLVTFWNKTFPLSRSWHVLGLGYNPHVNSRDIEHAAVIHYNGN 276
QKLNEDRSLWKLGTLP L+TFWNKTFPLSRSWHVLGLGYNPHVNSRDIE AAVIHYNGN
Sbjct: 3 QKLNEDRSLWKLGTLPPGLITFWNKTFPLSRSWHVLGLGYNPHVNSRDIERAAVIHYNGN 182
Query: 275 MKPWLEIGLPKFRSYWSKYLDYDQSFLRECNINP*RNLVLLVPSDITNSLFSFDVHFSVV 96
MKPWLEIGLPK+RSYWSKYLDYDQSFLRECNINP*RNLVLL+PSDITNSLFS DV FSVV
Sbjct: 183 MKPWLEIGLPKYRSYWSKYLDYDQSFLRECNINP*RNLVLLIPSDITNSLFSVDVPFSVV 362
Query: 95 SIVLS 81
SIV +
Sbjct: 363 SIVFN 377
Score = 259 bits (561), Expect(3) = 1e-075
Identities = 103/124 (83%), Positives = 108/124 (87%)
Frame = +2 / -2
Query: 86 VLC*LH*SAHRKKTGYWLCQKGLKAPGSFMD*CCIPEGKIGHNPDTWTSSSETWVDQSPT 265
+LC*LH* AHR+KT YWLCQKGL+ PGSFMD*CCIP GKIGHNPDTWTSSS TW QS
Sbjct: 372 ILC*LH*RAHRQKTSYWLCQKGLEGPGSFMD*CCIPAGKIGHNPDTWTSSSGTWAGQSLA 193
Query: 266 RASCCHCNV*LQHAQCLCC*HGDCNLDQEHAMTG*GEMSCSRM*PNTKGEYQVSRVIYLH 445
RASCCHCNV* +HAQC CC H DCNLDQEHAM G*GEMSCSRM* N +GEYQVSRVIYLH
Sbjct: 192 RASCCHCNV*PRHAQCPCCLHEDCNLDQEHAMIG*GEMSCSRM*SNPEGEYQVSRVIYLH 13
Query: 446 *ASA 457
*ASA
Sbjct: 12 *ASA 1
Score = 247 bits (534), Expect(2) = 2e-069
Identities = 109/124 (87%), Positives = 113/124 (91%)
Frame = +1 / -1
Query: 85 STMLTTLKCTSKENRLLVMSEGTKSTRFLHGLMLHSRRKDWS*SRYLDQ*LRNLGRPISN 264
+TMLTTLK TS EN+LLVMSEG + TRFLHGLMLHSRRKDWS*SRYLDQ*LR LGRPIS+
Sbjct: 373 NTMLTTLKGTSTENKLLVMSEGIRRTRFLHGLMLHSRRKDWS*SRYLDQ*LRYLGRPISS 194
Query: 265 QGFMLPL*CMTAACSMSLLLTWGL*PRPRTCHDRLRGNVLFQNVTKHKGRVPSFQSDLSS 444
QGFMLPL*CMTAA SMSLL T GL*PRPRTCHDRLRGNVLFQNV K GRVPSFQSDLSS
Sbjct: 193 QGFMLPL*CMTAARSMSLLFT*GL*PRPRTCHDRLRGNVLFQNVIKPGGRVPSFQSDLSS 14
Query: 445 LSFC 456
LSFC
Sbjct: 13 LSFC 2
Score = 241 bits (521), Expect(2) = 2e-066
Identities = 107/124 (86%), Positives = 111/124 (89%)
Frame = +3 / -3
Query: 84 EYYADYTKVHIERKQAIGYVRRD*KHQVPSWIDVAFPKERLVIIQILGPVAPKLG*TNLQ 263
EYYADYTK HI+RKQAIGYVRRD*K QVPSWI+VAFP+ERLVIIQILGPVAP LG NL
Sbjct: 374 EYYADYTKGHIDRKQAIGYVRRD*KDQVPSWINVAFPQERLVIIQILGPVAPVLGQANL* 195
Query: 264 PGLHVAIVMYDCSMLNVSAVNMGIVT*TKNMP*PAEGKCLVPECDQTQRESTKFPE*SIF 443
PGLHVAIVMYD LNV AV M IVT*TKNMP* AEGKCLVPECDQT+RESTKFPE*SIF
Sbjct: 194 PGLHVAIVMYDRGTLNVPAVYMRIVT*TKNMP*SAEGKCLVPECDQTRRESTKFPE*SIF 15
Query: 444 IKLL 455
IKLL
Sbjct: 14 IKLL 3
Score = 236 bits (510), Expect(2) = 8e-066
Identities = 102/123 (82%), Positives = 105/123 (85%)
Frame = -1 / +2
Query: 456 AEA**R*ITLETWYSPFVFGHILEQDISPQPVMACSWSRLQSPC*QQRH*ACCSHTLQWQ 277
AEA**R*ITLETWYSP F HILEQDISPQP+MACSWSRLQS C QQ H*AC HTLQWQ
Sbjct: 2 AEA**R*ITLETWYSPSGFDHILEQDISPQPIMACSWSRLQSSCKQQGH*ACRGHTLQWQ 181
Query: 276 HEALVGDWSTQVSELLVQVSGL*PIFPSGMQHQSMKEPGAFSPF*HNQ*PVFFRCAL*CS 97
HEAL DW QV ELLVQVSGL*PIFP+GMQH SMKEPG +PF*HNQ* VF RCAL*CS
Sbjct: 182 HEALARDWPAQVPELLVQVSGL*PIFPAGMQH*SMKEPGPSNPF*HNQ*LVFCRCAL*CS 361
Query: 96 QHS 88
QHS
Sbjct: 362 QHS 370
Score = 234 bits (505), Expect(2) = 4e-064
Identities = 108/126 (85%), Positives = 111/126 (88%)
Frame = -3 / +1
Query: 457 GRSLMKIDHSGNLVLSLCVWSHSGTRHFPSAGHGMFLV*VTIPMLTAETLSMLQSYITMA 278
GRSLMKIDHSGNLVLSL V SHSGTRHFPSA HGMFLV*VTI M TA TLS+ +SYITMA
Sbjct: 1 GRSLMKIDHSGNLVLSLRV*SHSGTRHFPSADHGMFLV*VTILM*TAGTLSVPRSYITMA 180
Query: 277 T*SPGWRLVYPSFGATGPSIWIMTNLSFGNATSIHEGTWCF*SLLT*PIACFLSMCTLV* 98
T*SPG RL PS GATGPSIWIMTNLS GNAT IHEGTW F*SLLT*PIACFLSMC LV*
Sbjct: 181 T*SPG*RLACPSTGATGPSIWIMTNLSCGNATLIHEGTWSF*SLLT*PIACFLSMCPLV* 360
Query: 97 SA*YSL 80
SA*YS+
Sbjct: 361 SA*YSI 378
Score = 42.3 bits (86), Expect(3) = 1e-075
Identities = 18/21 (85%), Positives = 21/21 (100%)
Frame = +2 / -3
Query: 20 KGSDKKHRQ*EILLTTDI*SK 82
KGS+KKHRQ*EI+LTT+I*SK
Sbjct: 446 KGSNKKHRQ*EIMLTTEI*SK 384
Score = 40.9 bits (83), Expect(2) = 1e-082
Identities = 17/20 (85%), Positives = 17/20 (85%)
Frame = -1 / +1
Query: 81 LL*ISVVNKISYCLCFLSDP 22
LL ISVVN ISYCLCFL DP
Sbjct: 385 LLYISVVNMISYCLCFLLDP 444
Score = 37.3 bits (75), Expect(2) = 2e-069
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = +3 / -1
Query: 21 KGLTRSTGNKKSC*QLISKAR 83
+G TRSTGNK+SC*QL KAR
Sbjct: 445 RGPTRSTGNKRSC*QLKYKAR 383
Score = 35.9 bits (72), Expect(2) = 8e-066
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = -2 / +2
Query: 83 SCFRYQLLTRFLIACASCQT 24
SCF +QLLT LIACASC T
Sbjct: 383 SCFIFQLLT*SLIACASCWT 442
Score = 33.1 bits (66), Expect(2) = 2e-066
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = +1 / -2
Query: 31 QEAQAIRNLVNN*YLKQES 87
QEAQAIR+ VNN* +KQES
Sbjct: 435 QEAQAIRDHVNN*NIKQES 379
Score = 32.7 bits (65), Expect(2) = 4e-064
Identities = 15/20 (75%), Positives = 15/20 (75%)
Frame = -3 / +3
Query: 82 LALDISC*QDFLLPVLLVRP 23
LAL SC* D LLPVLLV P
Sbjct: 384 LALYFSC*HDLLLPVLLVGP 443
Score = 22.1 bits (42), Expect(3) = 1e-075
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3 / -3
Query: 3 YSCNYAKG 26
Y CNYAKG
Sbjct: 464 YICNYAKG 441
>gb|CF487333.1|CF487333 POL1_43_D11.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_43_D11_A002 3', mRNA sequence
Length = 661
Score = 243 bits (525), Expect = 3e-063
Identities = 84/135 (62%), Positives = 111/135 (82%)
Frame = -2 / +2
Query: 581 NFSNPIITKSFDPHACVWAFGMNVFDLAEWRRQNITEIYHSWQKLNEDRSLWKLGTLPLC 402
NFSNP I ++FDP+AC WA+GMN+FDL EW++++IT IYH WQ LNEDR+LWKLGTLP
Sbjct: 2 NFSNPHIARNFDPNACGWAYGMNIFDLREWKKKDITGIYHKWQNLNEDRALWKLGTLPPG 181
Query: 401 LVTFWNKTFPLSRSWHVLGLGYNPHVNSRDIEHAAVIHYNGNMKPWLEIGLPKFRSYWSK 222
L+TF+ T PL +SWHVLGLGYNP ++ +I+ AAV+HYNGNMKPWLE+ + K+R YW+K
Sbjct: 182 LLTFYKLTHPLDKSWHVLGLGYNPSIDRSEIDSAAVVHYNGNMKPWLELAMTKYRPYWTK 361
Query: 221 YLDYDQSFLRECNIN 177
Y+ YD ++R CN++
Sbjct: 362 YIKYDHPYIRGCNLS 406
Score = 111 bits (236), Expect = 2e-023
Identities = 66/137 (48%), Positives = 73/137 (53%)
Frame = +1 / -2
Query: 169 LHGLMLHSRRKDWS*SRYLDQ*LRNLGRPISNQGFMLPL*CMTAACSMSLLLTWGL*PRP 348
++ L LH R S YL Q R L SN GFM PL* TAA S+S GL P P
Sbjct: 414 IYSLKLHPRM*G*SYLIYLVQYGRYLVIASSNHGFMFPL**TTAALSISERSMLGLYPNP 235
Query: 349 RTCHDRLRGNVLFQNVTKHKGRVPSFQSDLSSLSFCHE**ISVMFCRLHSARSNTFIPKA 528
RTCHD G V V + G VPSFQ LSS FCH *I V+ HS +S FIP A
Sbjct: 234 RTCHDLSSGCVNL*KVKRPGGSVPSFQRALSSFRFCHLW*IPVISFFFHSLKSKMFIP*A 55
Query: 529 QTQACGSKLLVIMGFEK 579
Q A GSK + GFEK
Sbjct: 54 QPHAFGSKFRAMCGFEK 4
>gb|CN127460.1|CN127460 RHOH1_23_D06.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_23_D06_A002 3', mRNA sequence
Length = 814
Score = 238 bits (515), Expect = 6e-062
Identities = 85/158 (53%), Positives = 114/158 (72%)
Frame = -2 / +1
Query: 650 MKGKVNGAVETCGESFHRYDRYLNFSNPIITKSFDPHACVWAFGMNVFDLAEWRRQNITE 471
+ G V GAVETC ESFHRY +YLNFS+P I+ DPH C WAFGMN+FDL WR++N T
Sbjct: 4 LHGNVIGAVETCLESFHRYHKYLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKENATS 183
Query: 470 IYHSWQKLNEDRSLWKLGTLPLCLVTFWNKTFPLSRSWHVLGLGYNPHVNSRDIEHAAVI 291
+YH WQ+ N D LW+ GTLP L+TF+ PL R WHVLGLGY+ ++ R IE AAV+
Sbjct: 184 LYHYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVV 363
Query: 290 HYNGNMKPWLEIGLPKFRSYWSKYLDYDQSFLRECNIN 177
HYNGNMKPWL++ + +++ W +Y++ ++REC ++
Sbjct: 364 HYNGNMKPWLKLAIRRYKYIWERYVNISHPYVRECMLH 477
Score = 99.1 bits (210), Expect(2) = 4e-023
Identities = 50/102 (49%), Positives = 60/102 (58%)
Frame = +1 / -3
Query: 340 PRPRTCHDRLRGNVLFQNVTKHKGRVPSFQSDLSSLSFCHE**ISVMFCRLHSARSNTFI 519
PRP+TCH R RG++ NV + GRVP QS+ S C * V F L + +S FI
Sbjct: 314 PRPKTCHLRSRGSIRP*NVKRPAGRVPVLQSNRSEFCSCQ**YNDVAFSFLQAIKSKMFI 135
Query: 520 PKAQTQACGSKLLVIMGFEKFRYRS*RWKLSPQVSTAPFTFP 645
PKA Q CGS L +++G EKFRY R S QVSTAP T P
Sbjct: 134 PKAHPQVCGSILELMVGCEKFRYL*YR*NDSKQVSTAPMTLP 9
Score = 30.4 bits (60), Expect(2) = 4e-023
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1 / -3
Query: 262 NQGFMLPL*CMTAACSM 312
+QGFM PL*C TAA S+
Sbjct: 392 SQGFMFPL*CTTAALSI 342
>gb|BZ695088.1|BZ695088 SP__Ba0057N21.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0057N21 3', DNA sequence
Length = 1000
Score = 235 bits (507), Expect = 8e-061
Identities = 94/104 (90%), Positives = 97/104 (93%)
Frame = -2 / -3
Query: 788 RPGRYLSILNHLRFYLPEMHPKLDKMVFLDDDIVVKKDLAGLWSINMKGKVNGAVETCGE 609
R +YLSILNHLRFYLPE++PKLDKMVFLDDDIVVKKDL LWSINMKGKVNGAVETCGE
Sbjct: 341 RNPKYLSILNHLRFYLPEIYPKLDKMVFLDDDIVVKKDLTALWSINMKGKVNGAVETCGE 162
Query: 608 SFHRYDRYLNFSNPIITKSFDPHACVWAFGMNVFDLAEWRRQNI 477
SFHRYDRYLNFSNPII KSFDPHA WAFGMNVFDLAEWRRQNI
Sbjct: 161 SFHRYDRYLNFSNPIIAKSFDPHAGGWAFGMNVFDLAEWRRQNI 30
Score = 206 bits (445), Expect = 3e-052
Identities = 87/110 (79%), Positives = 91/110 (82%)
Frame = +2 / +2
Query: 449 ASATSDKFQLCSAASIQPGQTHSFQKPKHKHVGQNSW**WDLKNSGIDHSDGNSLHKSQQ 628
ASA +CSAASIQP QTHSFQKP H+H GQNSW * DLK+SGIDHSDGNSLH SQQ
Sbjct: 2 ASARGIHLXVCSAASIQPDQTHSFQKPNHQHAGQNSWQ**DLKSSGIDHSDGNSLHMSQQ 181
Query: 629 HRLPSPSC*LTKGQPDPSLLRCHHQERPSCQALDASQVGKSGDD*GLTGT 778
H LPSPS *LTKGQ DPSLL CHHQERPSCQA D SQVGK+ DD*GLTGT
Sbjct: 182 HHLPSPSY*LTKGQSDPSLLLCHHQERPSCQASDKSQVGKNADD*GLTGT 331
Score = 190 bits (409), Expect = 3e-047
Identities = 83/100 (83%), Positives = 92/100 (92%)
Frame = +3 / +3
Query: 477 YVLPPPFSQVKHIHSKSPNTSMWVKTLGDNGI*KIQVSIIAMETLSTSLNSTVYLPLHVD 656
YVLPPPFSQ+KHIHSKSP TSM VKTLG+N I*K+QVSIIAMETLST LNST+YLPLH+D
Sbjct: 30 YVLPPPFSQIKHIHSKSPTTSMRVKTLGNNRI*KVQVSIIAMETLSTCLNSTIYLPLHID 209
Query: 657 *PKASQILLYYDVIIKKDHLVKLWMHLR*VKAEMIED*QV 776
*PK SQILLYY VIIKKDHLVKL ++LR*VK +MI+D*QV
Sbjct: 210 *PKGSQILLYYYVIIKKDHLVKLRINLR*VKTQMIKD*QV 329
Score = 187 bits (402), Expect = 2e-046
Identities = 82/101 (81%), Positives = 87/101 (86%)
Frame = -1 / -2
Query: 780 QVPVNPQSSPLLPT*DASKA*QDGLS***HRSKEGSGWPLVNQHEGEGKRCC*DLWREFP 601
+VPVNP SS LPT*D S+A*QDGLS***H SKEGS PLVNQ+EGEGK CC*D+WREFP
Sbjct: 333 EVPVNP*SSAFLPT*DLSEA*QDGLS***HSSKEGSDCPLVNQYEGEGKWCC*DMWREFP 154
Query: 600 SL*SIPEFFKSHYHQEF*PTCLCLGFWNECV*PG*MEAAEH 478
SL*SIPE FKS+Y QEF*P C LGFWNECV* G*MEAAEH
Sbjct: 153 SL*SIPELFKSYYCQEF*PACWWLGFWNECV*SG*MEAAEH 31
Score = 186 bits (400), Expect = 5e-046
Identities = 79/88 (89%), Positives = 81/88 (92%)
Frame = +1 / +1
Query: 478 MFCRLHSARSNTFIPKAQTQACGSKLLVIMGFEKFRYRS*RWKLSPQVSTAPFTFPFMLI 657
MFCRLHSARSNTFIPKAQ ACGSKLL I+GFEKFRYRS*RWKLSP VSTAPFTFPF+LI
Sbjct: 31 MFCRLHSARSNTFIPKAQPPACGSKLLAIIGFEKFRYRS*RWKLSPHVSTAPFTFPFILI 210
Query: 658 DQRPARSFFTTMSSSRKTILSSFGCISG 741
DQR RSFFTTMSSSRKTILSSFG ISG
Sbjct: 211 DQRAVRSFFTTMSSSRKTILSSFG*ISG 294
Score = 146 bits (313), Expect = 5e-034
Identities = 73/99 (73%), Positives = 74/99 (74%)
Frame = -3 / -1
Query: 775 TCQSSIISAFTYLRCIQSLTRWSFLMMTS**RRIWLAFGQST*RGXXXXXXXXXXXVSIA 596
TCQS II FTYLR I+SLTRWSFLMMT **RRI L FGQS *RG VSIA
Sbjct: 328 TCQSLIICVFTYLRFIRSLTRWSFLMMT***RRI*LPFGQSI*RGR*MVLLRHVERVSIA 149
Query: 595 MIDT*IFQIPLSPRVLTHMLVFGLLE*MCLTWLNGGGRT 479
MIDT* FQI L PRVLT MLV GLLE*MCL WLNGGGRT
Sbjct: 148 MIDT*TFQILLLPRVLTRMLVVGLLE*MCLIWLNGGGRT 32
>gb|CW789437.1|CW789437 SP__Ba0057N21.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0057N21 3', DNA sequence
Length = 714
Score = 233 bits (503), Expect = 3e-060
Identities = 93/103 (90%), Positives = 96/103 (93%)
Frame = -2 / -2
Query: 788 RPGRYLSILNHLRFYLPEMHPKLDKMVFLDDDIVVKKDLAGLWSINMKGKVNGAVETCGE 609
R +YLSILNHLRFYLPE++PKLDKMVFLDDDIVVKKDL LWSINMKGKVNGAVETCGE
Sbjct: 311 RNPKYLSILNHLRFYLPEIYPKLDKMVFLDDDIVVKKDLTALWSINMKGKVNGAVETCGE 132
Query: 608 SFHRYDRYLNFSNPIITKSFDPHACVWAFGMNVFDLAEWRRQN 480
SFHRYDRYLNFSNPII KSFDPHA WAFGMNVFDLAEWRRQN
Sbjct: 131 SFHRYDRYLNFSNPIIAKSFDPHAGGWAFGMNVFDLAEWRRQN 3
Score = 203 bits (438), Expect = 3e-051
Identities = 84/100 (84%), Positives = 87/100 (87%)
Frame = +2 / +2
Query: 479 CSAASIQPGQTHSFQKPKHKHVGQNSW**WDLKNSGIDHSDGNSLHKSQQHRLPSPSC*L 658
CSAASIQP QTHSFQKP H+H GQNSW * DLK+SGIDHSDGNSLH SQQH LPSPS *L
Sbjct: 2 CSAASIQPDQTHSFQKPNHQHAGQNSWQ**DLKSSGIDHSDGNSLHMSQQHHLPSPSY*L 181
Query: 659 TKGQPDPSLLRCHHQERPSCQALDASQVGKSGDD*GLTGT 778
TKGQ DPSLL CHHQERPSCQA D SQVGK+ DD*GLTGT
Sbjct: 182 TKGQSDPSLLLCHHQERPSCQASDKSQVGKNADD*GLTGT 301
Score = 187 bits (402), Expect = 2e-046
Identities = 82/101 (81%), Positives = 87/101 (86%)
Frame = -1 / -1
Query: 780 QVPVNPQSSPLLPT*DASKA*QDGLS***HRSKEGSGWPLVNQHEGEGKRCC*DLWREFP 601
+VPVNP SS LPT*D S+A*QDGLS***H SKEGS PLVNQ+EGEGK CC*D+WREFP
Sbjct: 303 EVPVNP*SSAFLPT*DLSEA*QDGLS***HSSKEGSDCPLVNQYEGEGKWCC*DMWREFP 124
Query: 600 SL*SIPEFFKSHYHQEF*PTCLCLGFWNECV*PG*MEAAEH 478
SL*SIPE FKS+Y QEF*P C LGFWNECV* G*MEAAEH
Sbjct: 123 SL*SIPELFKSYYCQEF*PACWWLGFWNECV*SG*MEAAEH 1
Score = 187 bits (402), Expect = 2e-046
Identities = 82/99 (82%), Positives = 91/99 (91%)
Frame = +3 / +3
Query: 480 VLPPPFSQVKHIHSKSPNTSMWVKTLGDNGI*KIQVSIIAMETLSTSLNSTVYLPLHVD* 659
VLPPPFSQ+KHIHSKSP TSM VKTLG+N I*K+QVSIIAMETLST LNST+YLPLH+D*
Sbjct: 3 VLPPPFSQIKHIHSKSPTTSMRVKTLGNNRI*KVQVSIIAMETLSTCLNSTIYLPLHID* 182
Query: 660 PKASQILLYYDVIIKKDHLVKLWMHLR*VKAEMIED*QV 776
PK SQILLYY VIIKKDHLVKL ++LR*VK +MI+D*QV
Sbjct: 183 PKGSQILLYYYVIIKKDHLVKLRINLR*VKTQMIKD*QV 299
Score = 186 bits (400), Expect = 5e-046
Identities = 79/88 (89%), Positives = 81/88 (92%)
Frame = +1 / +1
Query: 478 MFCRLHSARSNTFIPKAQTQACGSKLLVIMGFEKFRYRS*RWKLSPQVSTAPFTFPFMLI 657
MFCRLHSARSNTFIPKAQ ACGSKLL I+GFEKFRYRS*RWKLSP VSTAPFTFPF+LI
Sbjct: 1 MFCRLHSARSNTFIPKAQPPACGSKLLAIIGFEKFRYRS*RWKLSPHVSTAPFTFPFILI 180
Query: 658 DQRPARSFFTTMSSSRKTILSSFGCISG 741
DQR RSFFTTMSSSRKTILSSFG ISG
Sbjct: 181 DQRAVRSFFTTMSSSRKTILSSFG*ISG 264
Score = 146 bits (313), Expect = 5e-034
Identities = 73/99 (73%), Positives = 74/99 (74%)
Frame = -3 / -3
Query: 775 TCQSSIISAFTYLRCIQSLTRWSFLMMTS**RRIWLAFGQST*RGXXXXXXXXXXXVSIA 596
TCQS II FTYLR I+SLTRWSFLMMT **RRI L FGQS *RG VSIA
Sbjct: 298 TCQSLIICVFTYLRFIRSLTRWSFLMMT***RRI*LPFGQSI*RGR*MVLLRHVERVSIA 119
Query: 595 MIDT*IFQIPLSPRVLTHMLVFGLLE*MCLTWLNGGGRT 479
MIDT* FQI L PRVLT MLV GLLE*MCL WLNGGGRT
Sbjct: 118 MIDT*TFQILLLPRVLTRMLVVGLLE*MCLIWLNGGGRT 2
>gb|CW144377.1|CW144377 104_536_11137911_148_34962_056 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11137911, DNA
sequence
Length = 622
Score = 159 bits (341), Expect(2) = 6e-059
Identities = 55/90 (61%), Positives = 73/90 (81%)
Frame = -2 / +2
Query: 446 NEDRSLWKLGTLPLCLVTFWNKTFPLSRSWHVLGLGYNPHVNSRDIEHAAVIHYNGNMKP 267
NEDR+LWKLGTLP L+TF+ T PL +SWHVLGLGYNP ++ +I+ AAV+HYNGNMKP
Sbjct: 278 NEDRALWKLGTLPPGLLTFYKLTHPLDKSWHVLGLGYNPSIDRSEIDSAAVVHYNGNMKP 457
Query: 266 WLEIGLPKFRSYWSKYLDYDQSFLRECNIN 177
WLE+ + K+R YW+KY+ YD ++R CN++
Sbjct: 458 WLELAMTKYRPYWTKYIKYDHPYIRGCNLS 547
Score = 92.3 bits (195), Expect(2) = 6e-059
Identities = 31/47 (65%), Positives = 40/47 (85%)
Frame = -2 / +2
Query: 587 YLNFSNPIITKSFDPHACVWAFGMNVFDLAEWRRQNITEIYHSWQKL 447
YLNFSNP I ++FDP+AC WA+GMN+FDL EW++++IT IYH WQ L
Sbjct: 2 YLNFSNPHIARNFDPNACGWAYGMNIFDLREWKKKDITGIYHKWQNL 142
>gb|CW306008.1|CW306008 104_791_11466607_148_36273_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11466607, DNA
sequence
Length = 675
Score = 127 bits (271), Expect(2) = 2e-057
Identities = 44/92 (47%), Positives = 66/92 (71%)
Frame = -2 / -3
Query: 722 LDKMVFLDDDIVVKKDLAGLWSINMKGKVNGAVETCGESFHRYDRYLNFSNPIITKSFDP 543
L ++V L+DD+VV++DLAGLW ++M VN A+ TC F RY +YLNFS P++ +SF
Sbjct: 673 LRRVVLLEDDVVVQRDLAGLWRVDMGANVNAALHTCFGGFRRYGKYLNFSEPVVQESFSH 494
Query: 542 HACVWAFGMNVFDLAEWRRQNITEIYHSWQKL 447
AC W++G+NVFDL WRR+ T+ +H + ++
Sbjct: 493 RACAWSYGVNVFDLQGWRREQCTQQFHRFMEM 398
Score = 119 bits (254), Expect(2) = 2e-057
Identities = 42/77 (54%), Positives = 57/77 (74%)
Frame = -2 / -1
Query: 413 LPLCLVTFWNKTFPLSRSWHVLGLGYNPHVNSRDIEHAAVIHYNGNMKPWLEIGLPKFRS 234
LP+ L+TF+ KT PL +SWHV+GLGYNPH+ DI AAVIH+NGNMKPWL++ +++
Sbjct: 252 LPVGLMTFYGKTKPLDKSWHVMGLGYNPHIRPEDIGGAAVIHFNGNMKPWLDVAFNQYKH 73
Query: 233 YWSKYLDYDQSFLRECN 183
W+KY+D + FL N
Sbjct: 72 LWTKYVDTEMEFLTISN 22
>gb|BI139893.1|BI139893 IP1_47_A12.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 598
Score = 108 bits (230), Expect(3) = 5e-057
Identities = 38/92 (41%), Positives = 54/92 (58%)
Frame = -2 / +2
Query: 455 QKLNEDRSLWKLGTLPLCLVTFWNKTFPLSRSWHVLGLGYNPHVNSRDIEHAAVIHYNGN 276
+ L +LWK GTLP L+ F + SWH+LGLGY + + AAVIHYNG
Sbjct: 284 ENLKSGLTLWKFGTLPPALIAFRGHVHGIDPSWHLLGLGYQDKTDIESVRRAAVIHYNGQ 463
Query: 275 MKPWLEIGLPKFRSYWSKYLDYDQSFLRECNI 180
KPWL+I + +W+K+++Y F+R C+I
Sbjct: 464 CKPWLDIAFKNLQPFWTKHVNYSXDFVRNCHI 559
Score = 86.8 bits (183), Expect(3) = 5e-057
Identities = 29/52 (55%), Positives = 37/52 (71%)
Frame = -2 / +2
Query: 599 RYDRYLNFSNPIITKSFDPHACVWAFGMNVFDLAEWRRQNITEIYHSWQKLN 444
R+ Y NFS+P+I +S DP C WA+GMN+FDLA WR+ NI + YH W K N
Sbjct: 134 RFRTYFNFSHPVIARSLDPDECAWAYGMNIFDLAAWRKTNIRDTYHFWLKEN 289
Score = 66.6 bits (139), Expect(3) = 5e-057
Identities = 25/32 (78%), Positives = 31/32 (96%)
Frame = -2 / +2
Query: 710 VFLDDDIVVKKDLAGLWSINMKGKVNGAVETC 615
VFLDDDIVV++DL+ LW+IN++GKVNGAVETC
Sbjct: 8 VFLDDDIVVQRDLSPLWAINLEGKVNGAVETC 103
Score = 51.9 bits (107), Expect(3) = 1e-022
Identities = 24/47 (51%), Positives = 31/47 (65%)
Frame = +1 / -2
Query: 448 SFCHE**ISVMFCRLHSARSNTFIPKAQTQACGSKLLVIMGFEKFRY 588
SF +* +S+MF L +ARSN FIP AQ + GS+L I G EK +Y
Sbjct: 285 SFNQK*YVSLMFVFLQAARSNIFIPYAQAHSSGSRLRAITGCEKLKY 145
Score = 47.8 bits (98), Expect(3) = 1e-022
Identities = 23/31 (74%), Positives = 24/31 (77%)
Frame = +1 / -2
Query: 619 VSTAPFTFPFMLIDQRPARSFFTTMSSSRKT 711
VSTAPFTFP LI QR +S TTMSSSRKT
Sbjct: 99 VSTAPFTFPSRLIAQRGDKSR*TTMSSSRKT 7
Score = 45.5 bits (93), Expect(3) = 1e-022
Identities = 23/60 (38%), Positives = 36/60 (60%)
Frame = +3 / -1
Query: 252 TNLQPGLHVAIVMYDCSMLNVSAVNMGIVT*TKNMP*PAEGKCLVPECDQTQRESTKFPE 431
+N+ P L +AIVMY CS + + + +V+* K +P* + + P+C + STKFPE
Sbjct: 487 SNV*PWLALAIVMYHCSPPDALNICLVLVS*AKQVP*WVDAMHMTPKCYKGGW*STKFPE 308
>gb|CX612893.1|CX612893 GABR1_5_C04.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_5_C04_A002 3', mRNA sequence
Length = 762
Score = 221 bits (478), Expect = 8e-057
Identities = 77/145 (53%), Positives = 105/145 (72%)
Frame = -2 / +1
Query: 611 ESFHRYDRYLNFSNPIITKSFDPHACVWAFGMNVFDLAEWRRQNITEIYHSWQKLNEDRS 432
ESFHRY +YLNFS+P I+ DPH C WAFGMN+FDL WR++N T +YH WQ+ N D
Sbjct: 1 ESFHRYHKYLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKENATSLYHYWQEQNSDLL 180
Query: 431 LWKLGTLPLCLVTFWNKTFPLSRSWHVLGLGYNPHVNSRDIEHAAVIHYNGNMKPWLEIG 252
LW+ GTLP L+TF+ PL R WHVLGLGY+ ++ R IE AAV+HYNGNMKPWL++
Sbjct: 181 LWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHYNGNMKPWLKLA 360
Query: 251 LPKFRSYWSKYLDYDQSFLRECNIN 177
+ +++ W +Y++ ++REC ++
Sbjct: 361 IRRYKYIWERYVNISHPYVRECMLH 435
>gb|CF070980.1|CF070980 FE1_14_F12.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_14_F12_A002 5', mRNA sequence
Length = 692
Score = 215 bits (465), Expect = 5e-055
Identities = 77/130 (59%), Positives = 101/130 (77%)
Frame = -2 / -1
Query: 563 ITKSFDPHACVWAFGMNVFDLAEWRRQNITEIYHSWQKLNEDRSLWKLGTLPLCLVTFWN 384
I F+P+AC A+GMN FDL WRR+ TE YH WQ NE+R+LWKLGTLP L+TF++
Sbjct: 692 IKAKFNPNACGGAYGMNFFDLDSWRREKCTEQYHYWQNQNENRTLWKLGTLPPGLITFYS 513
Query: 383 KTFPLSRSWHVLGLGYNPHVNSRDIEHAAVIHYNGNMKPWLEIGLPKFRSYWSKYLDYDQ 204
T PL +SWHVLGLGYNP ++ +I +AAV+H+NGNMKPWL+IG+ +FR W+KY+DYD
Sbjct: 512 TTKPLEKSWHVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGMNQFRHLWTKYVDYDD 333
Query: 203 SFLRECNINP 174
S++R+CN P
Sbjct: 332 SYIRQCNFAP 303
>gb|CW031244.1|CW031244 104_259_10500694_114_30397 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10500694, DNA
sequence
Length = 776
Score = 205 bits (443), Expect = 5e-052
Identities = 77/121 (63%), Positives = 98/121 (80%)
Frame = -2 / +3
Query: 788 RPGRYLSILNHLRFYLPEMHPKLDKMVFLDDDIVVKKDLAGLWSINMKGKVNGAVETCGE 609
R +YLS+LNHLRFY+PE++P+L K+VFLDDDIVV+KDL+ L++IN+ G V GAVETC E
Sbjct: 414 RNPKYLSMLNHLRFYIPEIYPELQKVVFLDDDIVVQKDLSELFTINLNGNVMGAVETCME 593
Query: 608 SFHRYDRYLNFSNPIITKSFDPHACVWAFGMNVFDLAEWRRQNITEIYHSWQKLNEDRSL 429
+FHR+ +YLN S+P+I FDP AC WAFGMNV DL EWR +N+T IYH WQ+ N D +L
Sbjct: 594 TFHRFHKYLNHSHPLIRAHFDPDACGWAFGMNVLDLVEWRNKNVTGIYHYWQERNSDHTL 773
Query: 428 W 426
W
Sbjct: 774 W 776
>gb|BF587532.1|BF587532 FM1_37_E11.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 632
Score = 205 bits (442), Expect = 7e-052
Identities = 72/118 (61%), Positives = 94/118 (79%)
Frame = -2 / +1
Query: 527 AFGMNVFDLAEWRRQNITEIYHSWQKLNEDRSLWKLGTLPLCLVTFWNKTFPLSRSWHVL 348
A+GMN FDL WRR+ TE YH WQ NE+R+LWKLGTLP L+TF++ T PL +SWHVL
Sbjct: 1 AYGMNFFDLDSWRREKCTEQYHYWQNQNENRTLWKLGTLPXGLITFYSTTKPLEKSWHVL 180
Query: 347 GLGYNPHVNSRDIEHAAVIHYNGNMKPWLEIGLPKFRSYWSKYLDYDQSFLRECNINP 174
GLGYNP ++ +I +AAV+H+NGNMKPWL+IG+ +FR W+KY+DYD S++R+CN P
Sbjct: 181 GLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQCNFAP 354
>gb|BG101797.1|BG101797 RHIZ2_22_E09.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 591
Score = 188 bits (406), Expect = 7e-047
Identities = 67/114 (58%), Positives = 89/114 (78%)
Frame = -2 / +3
Query: 509 FDLAEWRRQNITEIYHSWQKLNEDRSLWKLGTLPLCLVTFWNKTFPLSRSWHVLGLGYNP 330
FDL EW+ ++IT IYH WQ +NE+R LWKLGTLP L+TF+ T PL +SWHVLGLGYNP
Sbjct: 3 FDLEEWKNKDITGIYHKWQNMNENRLLWKLGTLPPGLLTFYKLTHPLDKSWHVLGLGYNP 182
Query: 329 HVNSRDIEHAAVIHYNGNMKPWLEIGLPKFRSYWSKYLDYDQSFLRECNINP*R 168
+ +I++AAVIHYNGNMKPWLEI + K+R YW+KY++Y+ ++ C I+ *+
Sbjct: 183 TIERSEIDNAAVIHYNGNMKPWLEIAMTKYRPYWTKYINYEHPYIHGCKISQ*K 344
>gb|CD234655.1|CD234655 SS1_17_C07.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_17_C07_A012 3', mRNA sequence
Length = 683
Score = 175 bits (376), Expect = 9e-043
Identities = 60/118 (50%), Positives = 85/118 (72%)
Frame = -2 / +3
Query: 530 WAFGMNVFDLAEWRRQNITEIYHSWQKLNEDRSLWKLGTLPLCLVTFWNKTFPLSRSWHV 351
WAFGMN+FDL WR++N T +YH WQ+ N D LW+ GTLP L+TF+ PL R WHV
Sbjct: 3 WAFGMNIFDLIAWRKENATSLYHYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHV 182
Query: 350 LGLGYNPHVNSRDIEHAAVIHYNGNMKPWLEIGLPKFRSYWSKYLDYDQSFLRECNIN 177
LGLGY+ ++ R IE AAV+HYNGNMKPWL++ + +++ W +Y++ ++REC ++
Sbjct: 183 LGLGYDVDIDDRLIESAAVVHYNGNMKPWLKLAIRRYKYIWERYVNISHPYVRECMLH 356
>gb|BM331533.1|BM331533 PIC1_72_D10.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 596
Score = 170 bits (365), Expect = 3e-041
Identities = 59/95 (62%), Positives = 79/95 (83%)
Frame = -2 / +2
Query: 470 IYHSWQKLNEDRSLWKLGTLPLCLVTFWNKTFPLSRSWHVLGLGYNPHVNSRDIEHAAVI 291
IYH WQ LNEDR LWKLGTLP L+TF+N T+PL+R+WHVLGLGY+P V+ +I++AAV+
Sbjct: 2 IYHYWQDLNEDRKLWKLGTLPPGLITFYNLTYPLNRTWHVLGLGYDPAVDIAEIDNAAVV 181
Query: 290 HYNGNMKPWLEIGLPKFRSYWSKYLDYDQSFLREC 186
HYNGN KPWL++ + K+++YWSKY+D D S ++ C
Sbjct: 182 HYNGNYKPWLDLAISKYKTYWSKYVDVDNSHVQHC 286
>gb|CW068742.1|CW068742 104_317_10525284_1_30096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10525284, DNA
sequence
Length = 432
Score = 160 bits (345), Expect = 2e-038
Identities = 62/95 (65%), Positives = 79/95 (83%)
Frame = -2 / -2
Query: 788 RPGRYLSILNHLRFYLPEMHPKLDKMVFLDDDIVVKKDLAGLWSINMKGKVNGAVETCGE 609
R +YLS+LNHLRFY+PE++P+L K+VFLDDDIVV+KDL+ L++IN+ G V GAVETC E
Sbjct: 287 RNPKYLSMLNHLRFYIPEIYPELQKVVFLDDDIVVQKDLSELFTINLNGNVMGAVETCME 108
Query: 608 SFHRYDRYLNFSNPIITKSFDPHACVWAFGMNVFD 504
+FHR+ +YLN S+P+I FDP AC WAFGMNV D
Sbjct: 107 TFHRFHKYLNHSHPLIRAHFDPDACGWAFGMNVLD 3
>gb|AC169370.3| Sorghum bicolor clone SB_BBc0011I20, WORKING DRAFT SEQUENCE, 9
unordered pieces
Length = 143922
Score = 97.3 bits (206), Expect(3) = 4e-037
Identities = 35/79 (44%), Positives = 53/79 (67%)
Frame = -2 / -1
Query: 413 LPLCLVTFWNKTFPLSRSWHVLGLGYNPHVNSRDIEHAAVIHYNGNMKPWLEIGLPKFRS 234
LP L+ F + +PL SW GLG++ ++ DIE AA +HYNG MKPWL++G+ ++S
Sbjct: 66426 LPASLLAFQDLVYPLEDSWVQSGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGIHDYKS 66247
Query: 233 YWSKYLDYDQSFLRECNIN 177
YW +Y+ + F+ ECNI+
Sbjct: 66246 YWREYMTNGEKFMTECNIH 66190
Score = 77.6 bits (163), Expect(3) = 4e-037
Identities = 28/54 (51%), Positives = 42/54 (77%)
Frame = -2 / -3
Query: 776 YLSILNHLRFYLPEMHPKLDKMVFLDDDIVVKKDLAGLWSINMKGKVNGAVETC 615
Y+SI H F LP++ P L+++V LDDD++V+KDL+ LW+++M GKV GAV+ C
Sbjct: 66937 YISIFGHSHFLLPDLLPSLNRVVVLDDDLIVQKDLSSLWNLDMGGKVIGAVQFC 66776
Score = 38.2 bits (77), Expect(3) = 4e-037
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -2 / -3
Query: 542 HACVWAFGMNVFDLAEWRRQNITEIY 465
++CVW G+NV +L +WR IT +Y
Sbjct: 66721 NSCVWLSGLNVVELDKWRDMGITSLY 66644
>gb|CW158441.1|CW158441 104_564_11148823_148_36396_028 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11148823, DNA
sequence
Length = 643
Score = 155 bits (332), Expect = 1e-036
Identities = 55/111 (49%), Positives = 82/111 (73%)
Frame = -2 / -3
Query: 779 RYLSILNHLRFYLPEMHPKLDKMVFLDDDIVVKKDLAGLWSINMKGKVNGAVETCGESFH 600
R +++L++LRFYLPEM P L ++V L+DD+VV++DLAGLW ++M VN A+ TC F
Sbjct: 410 RDVALLDYLRFYLPEMFPALRRVVLLEDDVVVQRDLAGLWRVDMGANVNAALHTCFGGFR 231
Query: 599 RYDRYLNFSNPIITKSFDPHACVWAFGMNVFDLAEWRRQNITEIYHSWQKL 447
RY +YLNFS P++ +SF AC W++G+NVFDL WRR+ T+ +H + ++
Sbjct: 230 RYGKYLNFSEPVVQESFSHRACAWSYGVNVFDLQGWRREQCTQQFHRFMEM 78
>gb|CW229988.1|CW229988 104_671_11207609_148_37265_071 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11207609, DNA
sequence
Length = 621
Score = 155 bits (332), Expect = 1e-036
Identities = 55/111 (49%), Positives = 82/111 (73%)
Frame = -2 / -3
Query: 779 RYLSILNHLRFYLPEMHPKLDKMVFLDDDIVVKKDLAGLWSINMKGKVNGAVETCGESFH 600
R +++L++LRFYLPEM P L ++V L+DD+VV++DLAGLW ++M VN A+ TC F
Sbjct: 385 RDVALLDYLRFYLPEMFPALRRVVLLEDDVVVQRDLAGLWRVDMGANVNAALHTCFGGFR 206
Query: 599 RYDRYLNFSNPIITKSFDPHACVWAFGMNVFDLAEWRRQNITEIYHSWQKL 447
RY +YLNFS P++ +SF AC W++G+NVFDL WRR+ T+ +H + ++
Sbjct: 205 RYGKYLNFSEPVVQESFSHRACAWSYGVNVFDLQGWRREQCTQQFHRFMEM 53
>gb|CW285991.1|CW285991 104_763_11410641_116_35511_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11410641, DNA
sequence
Length = 612
Score = 152 bits (327), Expect = 5e-036
Identities = 55/93 (59%), Positives = 73/93 (78%)
Frame = -2 / +2
Query: 446 NEDRSLWKLGTLPLCLVTFWNKTFPLSRSWHVLGLGYNPHVNSRDIEHAAVIHYNGNMKP 267
NE+R LWKLGTLP L+TF+ T PL +SWHVLGLGYNP + +I++AAVIHYNGNMKP
Sbjct: 62 NENRLLWKLGTLPPGLLTFYKLTHPLDKSWHVLGLGYNPTIERSEIDNAAVIHYNGNMKP 241
Query: 266 WLEIGLPKFRSYWSKYLDYDQSFLRECNINP*R 168
WLEI + K+R YW+KY++Y+ ++ C I+ *+
Sbjct: 242 WLEIAMTKYRPYWTKYINYEHPYIHGCKISQ*K 340
>gb|CL193723.1|CL193723 104_417_10941134_116_32279_053 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10941134, DNA
sequence
Length = 686
Score = 132 bits (283), Expect(2) = 1e-035
Identities = 46/66 (69%), Positives = 58/66 (87%)
Frame = -2 / +2
Query: 644 GKVNGAVETCGESFHRYDRYLNFSNPIITKSFDPHACVWAFGMNVFDLAEWRRQNITEIY 465
G VNGAVETCGESFHR+D+YLNFSNP I+++FDP+AC WA+GMN+FDL EW+ ++IT IY
Sbjct: 5 GNVNGAVETCGESFHRFDKYLNFSNPNISQNFDPNACGWAYGMNMFDLEEWKNKDITGIY 184
Query: 464 HSWQKL 447
H WQ +
Sbjct: 185 HKWQNM 202
Score = 40.9 bits (83), Expect(2) = 1e-035
Identities = 17/26 (65%), Positives = 19/26 (73%)
Frame = -2 / +1
Query: 446 NEDRSLWKLGTLPLCLVTFWNKTFPL 369
NE+R LWKLGTLP L TF+ T PL
Sbjct: 607 NENRLLWKLGTLPPGLSTFYKLTHPL 684
>gb|BI212063.1|BI212063 IP1_61_B03.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 648
Score = 96.8 bits (205), Expect(3) = 6e-032
Identities = 35/91 (38%), Positives = 55/91 (60%)
Frame = -2 / +1
Query: 443 EDRSLWKLGTLPLCLVTFWNKTFPLSRSWHVLGLGYNPHVNSRDIEHAAVIHYNGNMKPW 264
+D + PL L++F + +PL + GLGY+ ++ +A +HYNGNMKPW
Sbjct: 214 KDELSLRAAAFPLSLLSFQHLIYPLDEKLTLAGLGYDYGIDEVVARRSASLHYNGNMKPW 393
Query: 263 LEIGLPKFRSYWSKYLDYDQSFLRECNINP* 171
LE+G+P ++ YW ++L F+ ECN+NP*
Sbjct: 394 LELGIPDYKKYWKRFLVRGDRFMDECNVNP* 486
Score = 44.6 bits (91), Expect(3) = 6e-032
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = -2 / +1
Query: 554 SFDPHACVWAFGMNVFDLAEWRRQNITEIY 465
++DP+ C W G+N+ +L +WR N+TE Y
Sbjct: 97 AYDPNLCAWMSGVNLINLDKWREHNVTENY 186
Score = 35.4 bits (71), Expect(3) = 6e-032
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = -2 / +1
Query: 665 LWSINMKGKVNGAVETCG 612
LW+I+M KVNGAVE CG
Sbjct: 4 LWNIDMGDKVNGAVELCG 57
>gb|CW388065.1|CW388065 fsbb001f072k16k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f072k16, DNA
sequence
Length = 722
Score = 99.1 bits (210), Expect(2) = 1e-031
Identities = 40/61 (65%), Positives = 46/61 (75%)
Frame = -2 / -2
Query: 788 RPGRYLSILNHLRFYLPEMHPKLDKMVFLDDDIVVKKDLAGLWSINMKGKVNGAVETCGE 609
R RY S LNHLRFYLPE+ P L K+V LD D+VV+ DL GLW ++MKGKV GAVETC
Sbjct: 310 RDPRYTSALNHLRFYLPEVFPSLGKVVLLDHDVVVQNDLTGLWDLDMKGKVIGAVETCTS 131
Query: 608 S 606
S
Sbjct: 130 S 128
Score = 59.3 bits (123), Expect(2) = 1e-031
Identities = 22/40 (55%), Positives = 27/40 (67%)
Frame = -2 / -2
Query: 620 TCGESFHRYDRYLNFSNPIITKSFDPHACVWAFGMNVFDL 501
T E +HR D ++FSNP I DP AC +AFGMN+FDL
Sbjct: 136 TSSEGYHRLDSLVDFSNPSIFDKVDPKACAFAFGMNIFDL 17
>gb|CW381875.1|CW381875 fsbb001f063h19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f063h19, DNA
sequence
Length = 722
Score = 135 bits (289), Expect = 9e-031
Identities = 47/90 (52%), Positives = 68/90 (75%)
Frame = -2 / +2
Query: 437 RSLWKLGTLPLCLVTFWNKTFPLSRSWHVLGLGYNPHVNSRDIEHAAVIHYNGNMKPWLE 258
+ LWK G+LPL +TF+N+T PL WHV GLG++ + ++E A+VIHY+G +KPWLE
Sbjct: 71 QKLWKPGSLPLGQLTFYNRTLPLDHRWHVFGLGHDFSIGRNELESASVIHYSGKLKPWLE 250
Query: 257 IGLPKFRSYWSKYLDYDQSFLRECNINP*R 168
I +PK+R YW++YL+YD L++CNI+ *R
Sbjct: 251 ISIPKYRDYWNRYLNYDNPHLQQCNIHG*R 340
>gb|CW285992.1|CW285992 104_763_11410641_148_35507_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11410641, DNA
sequence
Length = 694
Score = 123 bits (264), Expect = 3e-027
Identities = 43/76 (56%), Positives = 59/76 (77%)
Frame = -2 / -1
Query: 395 TFWNKTFPLSRSWHVLGLGYNPHVNSRDIEHAAVIHYNGNMKPWLEIGLPKFRSYWSKYL 216
TF+ T PL +SWHVLGLGYNP + +I++AAVIHYNGNMKPWLEI + K+R YW+KY+
Sbjct: 694 TFYKLTHPLDKSWHVLGLGYNPTMXRSEIDNAAVIHYNGNMKPWLEIAMTKYRPYWTKYI 515
Query: 215 DYDQSFLRECNINP*R 168
+Y+ ++ C I+ *+
Sbjct: 514 NYEHPYIHGCKISQ*K 467
>gb|CD210962.1|CD210962 HS1_58_B05.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_58_B05_A012 3', mRNA sequence
Length = 733
Score = 96.8 bits (205), Expect(2) = 1e-026
Identities = 35/91 (38%), Positives = 55/91 (60%)
Frame = -2 / +1
Query: 443 EDRSLWKLGTLPLCLVTFWNKTFPLSRSWHVLGLGYNPHVNSRDIEHAAVIHYNGNMKPW 264
+D + PL L++F + +PL + GLGY+ ++ +A +HYNGNMKPW
Sbjct: 115 KDELSLRAAAFPLSLLSFQHLIYPLDEKLTLAGLGYDYGIDEVVARRSASLHYNGNMKPW 294
Query: 263 LEIGLPKFRSYWSKYLDYDQSFLRECNINP* 171
LE+G+P ++ YW ++L F+ ECN+NP*
Sbjct: 295 LELGIPDYKKYWKRFLVRGDRFMDECNVNP* 387
Score = 44.1 bits (90), Expect(2) = 1e-026
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -2 / +1
Query: 551 FDPHACVWAFGMNVFDLAEWRRQNITEIY 465
+DP+ C W G+N+ +L +WR N+TE Y
Sbjct: 1 YDPNLCAWMSGVNLINLDKWREHNVTENY 87
>gb|CF482490.1|CF482490 POL1_7_F08.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_7_F08_A002 3', mRNA sequence
Length = 521
Score = 120 bits (256), Expect = 3e-026
Identities = 39/64 (60%), Positives = 54/64 (84%)
Frame = -2 / +2
Query: 365 RSWHVLGLGYNPHVNSRDIEHAAVIHYNGNMKPWLEIGLPKFRSYWSKYLDYDQSFLREC 186
+SWHVLGLGYNP ++ +I +AAV+H+NGNMKPWL+IG+ +FR W+KY+DYD S++R+C
Sbjct: 5 KSWHVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQC 184
Query: 185 NINP 174
N P
Sbjct: 185 NFAP 196
>gb|CW354779.1|CW354779 fsbb001f019c05k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f019c05, DNA
sequence
Length = 265
Score = 116 bits (249), Expect = 3e-025
Identities = 40/56 (71%), Positives = 49/56 (87%)
Frame = -2 / -1
Query: 629 AVETCGESFHRYDRYLNFSNPIITKSFDPHACVWAFGMNVFDLAEWRRQNITEIYH 462
AV TCG +FHR+DRYLNFSNP+I K FD AC WA+GMN+FDL+EWR+QNIT++YH
Sbjct: 265 AVHTCGATFHRFDRYLNFSNPLIAKQFDQRACGWAYGMNMFDLSEWRKQNITDVYH 98
>gb|CW374401.1|CW374401 fsbb001f051e01f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f051e01, DNA
sequence
Length = 432
Score = 72.1 bits (151), Expect(2) = 3e-025
Identities = 24/50 (48%), Positives = 33/50 (66%)
Frame = -2 / +2
Query: 599 RYDRYLNFSNPIITKSFDPHACVWAFGMNVFDLAEWRRQNITEIYHSWQK 450
++ Y NFS+P+I K+FDP WA+GMN+ DL WR+ I + YH W K
Sbjct: 221 KFKNYFNFSHPLIAKNFDPSKRAWAYGMNISDLNAWRKTTIKDKYHHWVK 370
Score = 64.3 bits (134), Expect(2) = 3e-025
Identities = 24/41 (58%), Positives = 32/41 (78%)
Frame = -2 / +2
Query: 737 EMHPKLDKMVFLDDDIVVKKDLAGLWSINMKGKVNGAVETC 615
++ P L+K FLDDD+VV+ DL+ LW I++ GK NGAVETC
Sbjct: 68 QVFPNLNKAGFLDDDVVVQHDLSPLWDIDLAGKANGAVETC 190
>gb|CL158361.1|CL158361 104_347_10803488_116_31378_080 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10803488, DNA
sequence
Length = 731
Score = 115 bits (246), Expect = 8e-025
Identities = 42/95 (44%), Positives = 65/95 (68%)
Frame = -2 / -3
Query: 401 LVTFWNKTFPLSRSWHVLGLGYNPHVNSRDIEHAAVIHYNGNMKPWLEIGLPKFRSYWSK 222
L++F+ T PL +SWHV+GLGYNP ++ I AAVIH++GNMKPWL++ L ++++ W+K
Sbjct: 354 LMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAVIHFDGNMKPWLDVALNQYKALWTK 175
Query: 221 YLDYDQSFLRECNINP*RNLVLLVPSDITNSLFSF 117
Y+D + FL CN *R+ + L+ + + SF
Sbjct: 174 YVDTEMEFLTLCNFGL*RDSLELLRKPLAGATSSF 70
>gb|CF480371.1|CF480371 POL1_65_H05.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_65_H05_A002 3', mRNA sequence
Length = 430
Score = 112 bits (240), Expect = 5e-024
Identities = 38/66 (57%), Positives = 53/66 (80%)
Frame = -2 / +2
Query: 365 RSWHVLGLGYNPHVNSRDIEHAAVIHYNGNMKPWLEIGLPKFRSYWSKYLDYDQSFLREC 186
+SWHVLGLGYNP + +I++AAVIHYNGNMKPWLEI + K+R YW+KY++Y+ ++ C
Sbjct: 5 KSWHVLGLGYNPTIERSEIDNAAVIHYNGNMKPWLEIAMTKYRPYWTKYINYEPPYIHGC 184
Query: 185 NINP*R 168
I+ *+
Sbjct: 185 KISQ*K 202
>gb|CL158360.1|CL158360 104_347_10803488_114_31377_080 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10803488, DNA
sequence
Length = 727
Score = 111 bits (238), Expect = 1e-023
Identities = 39/79 (49%), Positives = 58/79 (73%)
Frame = -2 / +2
Query: 401 LVTFWNKTFPLSRSWHVLGLGYNPHVNSRDIEHAAVIHYNGNMKPWLEIGLPKFRSYWSK 222
L++F+ T PL +SWHV+GLGYNP ++ I AAVIH++GNMKPWL++ L ++++ W+K
Sbjct: 482 LMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAVIHFDGNMKPWLDVALNQYKALWTK 661
Query: 221 YLDYDQSFLRECNINP*RN 165
Y+D + FL CN *R+
Sbjct: 662 YVDTEMEFLTLCNFGL*RD 718
>gb|BI139892.1|BI139892 IP1_47_A11.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 238
Score = 66.6 bits (139), Expect(2) = 2e-023
Identities = 25/32 (78%), Positives = 31/32 (96%)
Frame = -2 / +2
Query: 710 VFLDDDIVVKKDLAGLWSINMKGKVNGAVETC 615
VFLDDDIVV++DL+ LW+IN++GKVNGAVETC
Sbjct: 8 VFLDDDIVVQRDLSPLWAINLEGKVNGAVETC 103
Score = 62.9 bits (131), Expect(2) = 2e-023
Identities = 20/35 (57%), Positives = 28/35 (80%)
Frame = -2 / +2
Query: 602 HRYDRYLNFSNPIITKSFDPHACVWAFGMNVFDLA 498
+R+ Y NFS+P+I +S DP+ C WA+GMN+FDLA
Sbjct: 131 NRFRTYFNFSHPVIARSLDPYECAWAYGMNIFDLA 235
>gb|CF485968.1|CF485968 POL1_34_H03.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_34_H03_A002 5', mRNA sequence
Length = 620
Score = 106 bits (227), Expect = 3e-022
Identities = 37/92 (40%), Positives = 60/92 (65%)
Frame = -2 / +1
Query: 446 NEDRSLWKLGTLPLCLVTFWNKTFPLSRSWHVLGLGYNPHVNSRDIEHAAVIHYNGNMKP 267
N+D + + LP+ L++F + +PL + GLGY+ + + +A +HYNGNMKP
Sbjct: 43 NDDEASLRASALPISLLSFQHLLYPLDERLTLSGLGYDYGIKEEVAQSSASLHYNGNMKP 222
Query: 266 WLEIGLPKFRSYWSKYLDYDQSFLRECNINP* 171
WLE+G+P +R YW ++L D+ F+ ECN++P*
Sbjct: 223 WLELGIPDYRKYWKRFLTRDERFMDECNVSP* 318
>gb|CW037385.1|CW037385 104_269_10504310_115_30384 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10504310, DNA
sequence
Length = 689
Score = 81.3 bits (171), Expect(2) = 4e-022
Identities = 31/56 (55%), Positives = 44/56 (78%)
Frame = -2 / +2
Query: 779 RYLSILNHLRFYLPEMHPKLDKMVFLDDDIVVKKDLAGLWSINMKGKVNGAVETCG 612
+YLS+ +H F +PE+ L+K+V LDDD+VV++DL+ LW+I+M KVNGAVE CG
Sbjct: 65 KYLSLFSHSHFVIPEIFKYLNKVVVLDDDVVVQRDLSFLWNIDMGDKVNGAVELCG 232
Score = 44.6 bits (91), Expect(2) = 4e-022
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = -2 / +2
Query: 554 SFDPHACVWAFGMNVFDLAEWRRQNITEIY 465
++DP+ C W G+N+ +L +WR N+TE Y
Sbjct: 272 AYDPNLCAWMSGVNLINLDKWREHNVTENY 361
>gb|CL197598.1|CL197598 104_424_10943847_114_32384_054 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943847, DNA
sequence
Length = 643
Score = 102 bits (217), Expect = 8e-021
Identities = 33/57 (57%), Positives = 47/57 (82%)
Frame = -2 / +1
Query: 344 LGYNPHVNSRDIEHAAVIHYNGNMKPWLEIGLPKFRSYWSKYLDYDQSFLRECNINP 174
LGYNP ++ +I +AAV+H+NGNMKPWL+IG+ +FR W+KY+DYD S++R+CN P
Sbjct: 1 LGYNPSISMEEIRNAAVVHFNGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQCNFAP 171
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,085,048,501
Number of Sequences: 832831
Number of extensions: 17196240
Number of successful extensions: 92894
Number of sequences better than 1.0e-020: 46
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 25069686902
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)