TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5704580.2.1
(721 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD208091.1|CD208091 HS1_31_E03.b1_A012 Heat-shocked seed... 296 e-110
gb|CD224742.1|CD224742 CCC1_36_C12.b1_A007 Callus culture/c... 241 2e-080
>gb|CD208091.1|CD208091 HS1_31_E03.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_31_E03_A012 3', mRNA sequence
Length = 591
Score = 296 bits (641), Expect(2) = e-106
Identities = 118/126 (93%), Positives = 121/126 (96%)
Frame = +3 / -2
Query: 231 HLLPKLPPYAFLCCQALQFAKHKTGLLRVAIHKRVLVYLFAFLYNLLGFLFWNAFPHCHK 410
HLLPK PPYAFLCCQALQFAKHKTGLLRVAIH+R+LVYLFAFLYNLL FL WNAFPHCHK
Sbjct: 380 HLLPKFPPYAFLCCQALQFAKHKTGLLRVAIHERILVYLFAFLYNLLSFLSWNAFPHCHK 201
Query: 411 LIKNLRRAIRLMFQYISVNESKAIQTLS*S*LPHICQNPHSAFNFCHVDVFPEEIHKHLF 590
L+ NLRRAIRLMFQYI VNESKAIQTLS*S*LPHICQNPHSAFNFCHVDVFPEEIHKHLF
Sbjct: 200 LLNNLRRAIRLMFQYICVNESKAIQTLS*S*LPHICQNPHSAFNFCHVDVFPEEIHKHLF 21
Query: 591 I*PHPL 608
I*PHPL
Sbjct: 20 I*PHPL 3
Score = 291 bits (629), Expect(2) = e-110
Identities = 124/128 (96%), Positives = 125/128 (97%)
Frame = -3 / +3
Query: 608 ERMRLDEEVLMDFFREHINVTKVESRVRILADMRELASAESLDSFTLIYTNILEHQPDCP 429
ERMRLDEEVLMDFFREHINVTKVESRVRILADMRELASAESLDSFTLIYTNILEHQPDCP
Sbjct: 3 ERMRLDEEVLMDFFREHINVTKVESRVRILADMRELASAESLDSFTLIYTNILEHQPDCP 182
Query: 428 PEVFYKLVAMREGIPKKEAKEVVQECKEIYENSLVDGNPQKSGFVFGKLKCLTAKKGIWR 249
PEV KLVAMREGIP+KEAKEVVQECKEIYENSLVDGNPQKSGFVFGKLKCLTAKKGIWR
Sbjct: 183 PEVVEKLVAMREGIPRKEAKEVVQECKEIYENSLVDGNPQKSGFVFGKLKCLTAKKGIWR 362
Query: 248 KLGQ*VWT 225
KLGQ*V T
Sbjct: 363 KLGQ*VVT 386
Score = 267 bits (577), Expect(2) = 1e-098
Identities = 115/124 (92%), Positives = 117/124 (94%)
Frame = -1 / +1
Query: 604 G*G*MKRCLWISSGNTST*QKLKAECGFWQI*GS*LQLRVWIALLSFTLIYWNINLIARL 425
G*G*MKRCLWISSGNTST*QKLKAECGFWQI*GS*LQLRVWIALLSFT IYWNINLIARL
Sbjct: 7 G*G*MKRCLWISSGNTST*QKLKAECGFWQI*GS*LQLRVWIALLSFTQIYWNINLIARL 186
Query: 424 RFFISLWQCGKAFQKRKPRRLYKNAKRYTRTRLWMATLRSPVLCLAN*SA*QQRKAYGGS 245
R SLWQCGKAFQ+RK RRLYKNAKRYTR R WMATLRSPVLCLAN*SA*QQRKAYGG+
Sbjct: 187 RLLRSLWQCGKAFQERKLRRLYKNAKRYTRIRSWMATLRSPVLCLAN*SA*QQRKAYGGN 366
Query: 244 LGSK 233
LGSK
Sbjct: 367 LGSK 378
Score = 261 bits (564), Expect(2) = 8e-095
Identities = 111/123 (90%), Positives = 113/123 (91%)
Frame = -2 / +2
Query: 585 GAYGFLQGTHQRDKS*KQSADSGRYEGASFS*EFG*LYSHLH*YTGTST*LPA*GFL*AC 406
GAYGFLQGTHQRDKS*KQSADSGRYEGASFS*EFG*LYSHLH YTGTST*LPA*G AC
Sbjct: 26 GAYGFLQGTHQRDKS*KQSADSGRYEGASFS*EFG*LYSHLHKYTGTST*LPA*GC*EAC 205
Query: 405 GNAGRHSKKGSQGGCTRMQRDIRELACGWQPSEVRFCVWQIEVLDSKERHMEEAWAVSVD 226
GNAGRHSKKGS GGCTRMQRDIRE A GWQPSEVRFCVWQIEVLDSKERHMEE WAVS D
Sbjct: 206 GNAGRHSKKGS*GGCTRMQRDIREFARGWQPSEVRFCVWQIEVLDSKERHMEETWAVSGD 385
Query: 225 LSR 217
+ +
Sbjct: 386 MQQ 394
Score = 211 bits (455), Expect(2) = 1e-079
Identities = 89/96 (92%), Positives = 93/96 (96%)
Frame = +2 / -1
Query: 299 NRTSEGCHPQASSRISLCILVQPPWLPFLECLPALPQAYKKPQAGNQVDVPVY*CK*E*S 478
NRTSEGCHP+A+SRISLCILVQPP LPFLECLPALPQA ++PQAGNQVDVPVY CK*E*S
Sbjct: 312 NRTSEGCHPRANSRISLCILVQPP*LPFLECLPALPQASQQPQAGNQVDVPVYLCK*E*S 133
Query: 479 YPNSQLKLAPSYLPESALCFQLLSR*CVP*RNP*AP 586
YPNSQLKLAPSYLPESALCFQLLSR*CVP*RNP*AP
Sbjct: 132 YPNSQLKLAPSYLPESALCFQLLSR*CVP*RNP*AP 25
Score = 201 bits (434), Expect(3) = 7e-067
Identities = 88/112 (78%), Positives = 88/112 (78%)
Frame = +1 / -3
Query: 226 VHTYCPSFLHMPFFAVKHFNLPNTKPDF*GLPSTSEFSYISLHSCTTSLASFFGMPSRIA 405
V TYCPSFLHMPFFAVKHFNLPNTKPDF*GLPSTSEFSYISLHSCTTSLASF GMPSRIA
Sbjct: 385 VTTYCPSFLHMPFFAVKHFNLPNTKPDF*GLPSTSEFSYISLHSCTTSLASFLGMPSRIA 206
Query: 406 TSL*KTSGGQSG*CSSILV*MRVXXXXXXXXXXXXXXXXXXTLLSTFVTLMC 561
TS TSGGQSG*CSSI V*MRV TLLSTFVTLMC
Sbjct: 205 TSFSTTSGGQSG*CSSIFV*MRVKLSKLSAEASSLISARIRTLLSTFVTLMC 50
Score = 128 bits (274), Expect(2) = e-110
Identities = 51/59 (86%), Positives = 52/59 (88%)
Frame = -1 / +2
Query: 193 KDCTFHFSMIILLFFCRCYCWVSRLDYQCVLSLRSKNVYSTLLSYRGFWCKNM*FIQ*N 17
KDCTFHF MIILLFFCRCYCWVSRL YQCV S RSK+VYS LLSYR FWCKNM* IQ*N
Sbjct: 413 KDCTFHF*MIILLFFCRCYCWVSRLYYQCVCSFRSKSVYSILLSYREFWCKNM*SIQ*N 589
Score = 114 bits (244), Expect(2) = 1e-098
Identities = 49/60 (81%), Positives = 55/60 (91%)
Frame = -3 / +1
Query: 197 RQRLYVSLLYDHSFVLLSMLLLGFTFRLSVCTQLEEQKCIFHFA*LQRILV*EYVIYSIK 18
++RLY+S L DHSFVLLSMLLLGFTF LSVC QL+EQKCIFHF *LQRILV*++VIYSIK
Sbjct: 409 KERLYISFLNDHSFVLLSMLLLGFTFILSVCMQLQEQKCIFHFT*LQRILV*KHVIYSIK 588
Score = 111 bits (237), Expect(2) = e-106
Identities = 49/60 (81%), Positives = 52/60 (86%)
Frame = +1 / -2
Query: 19 FIE*ITYSYTKILCS*AKWNIHFCSSS*VHTDSLNVKPNSSIDKRTKE*S*RSETYSLCL 198
FIE*IT YTKILCS* KWNIHFCS S +HTDS+NVKPNSSIDKRTKE*S R+E YSL L
Sbjct: 587 FIE*ITCFYTKILCS*VKWNIHFCS*SCIHTDSINVKPNSSIDKRTKE*SFRNEMYSLSL 408
Score = 107 bits (229), Expect(2) = 8e-095
Identities = 46/58 (79%), Positives = 50/58 (86%)
Frame = -2 / +3
Query: 192 KTVRFTSL*SFFCSFVDATVGFHV*TISVYSA*GAKMYIPLCLATEDFGVRICNLFNK 19
KTV F S *SFFCSFVDATVGFHV TISVY+A GAK+YIP LATE+FGV+ CNLFNK
Sbjct: 414 KTVHFISK*SFFCSFVDATVGFHVYTISVYAASGAKVYIPFYLATENFGVKTCNLFNK 587
Score = 107 bits (228), Expect(2) = 1e-079
Identities = 46/59 (77%), Positives = 52/59 (88%)
Frame = +2 / -3
Query: 17 VLLNKLHILTPKSSVAKQSGIYIFAPQAEYTLIV*T*NPTVASTKEQKNDHREVKRTVF 193
+LLN+LH+ TPK SVAK +GIY FAP+A YTLIV*T*NPTVASTKEQKNDH E+K TVF
Sbjct: 589 ILLNRLHVFTPKFSVAK*NGIYTFAPEAAYTLIV*T*NPTVASTKEQKNDHLEMKCTVF 413
Score = 48.3 bits (99), Expect(3) = 7e-067
Identities = 22/23 (95%), Positives = 22/23 (95%)
Frame = +3 / -1
Query: 123 RETQQ*HRQKNKRMIIEK*NVQS 191
RETQQ*HRQKNKRMII K*NVQS
Sbjct: 483 RETQQ*HRQKNKRMII*K*NVQS 415
Score = 44.6 bits (91), Expect(3) = 7e-067
Identities = 18/22 (81%), Positives = 21/22 (95%)
Frame = +3 / -1
Query: 18 FY*INYIFLHQNPL*LSKVEYT 83
FY*I+Y+FLHQN L*LSK+EYT
Sbjct: 588 FY*IDYMFLHQNSL*LSKMEYT 523
>gb|CD224742.1|CD224742 CCC1_36_C12.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_36_C12_A007 3', mRNA sequence
Length = 522
Score = 241 bits (521), Expect(3) = 5e-075
Identities = 97/105 (92%), Positives = 100/105 (95%)
Frame = +3 / -3
Query: 231 HLLPKLPPYAFLCCQALQFAKHKTGLLRVAIHKRVLVYLFAFLYNLLGFLFWNAFPHCHK 410
HLLPK PPYAFLCCQALQFAKHKTGLLRVAIH+R+LVYLFAFLYNLL FL WNAFPHCHK
Sbjct: 316 HLLPKFPPYAFLCCQALQFAKHKTGLLRVAIHERILVYLFAFLYNLLSFLSWNAFPHCHK 137
Query: 411 LIKNLRRAIRLMFQYISVNESKAIQTLS*S*LPHICQNPHSAFNF 545
L+ NLRRAIRLMFQYI VNESKAIQTLS*S*LPHICQNPHSAFNF
Sbjct: 136 LLNNLRRAIRLMFQYICVNESKAIQTLS*S*LPHICQNPHSAFNF 2
Score = 241 bits (521), Expect(3) = 2e-080
Identities = 103/107 (96%), Positives = 104/107 (97%)
Frame = -3 / +2
Query: 545 KVESRVRILADMRELASAESLDSFTLIYTNILEHQPDCPPEVFYKLVAMREGIPKKEAKE 366
KVESRVRILADMRELASAESLDSFTLIYTNILEHQPDCPPEV KLVAMREGIP+KEAKE
Sbjct: 2 KVESRVRILADMRELASAESLDSFTLIYTNILEHQPDCPPEVVEKLVAMREGIPRKEAKE 181
Query: 365 VVQECKEIYENSLVDGNPQKSGFVFGKLKCLTAKKGIWRKLGQ*VWT 225
VVQECKEIYENSLVDGNPQKSGFVFGKLKCLTAKKGIWRKLGQ*V T
Sbjct: 182 VVQECKEIYENSLVDGNPQKSGFVFGKLKCLTAKKGIWRKLGQ*VVT 322
Score = 227 bits (491), Expect(3) = 1e-070
Identities = 98/110 (89%), Positives = 100/110 (90%)
Frame = -2 / +1
Query: 546 KS*KQSADSGRYEGASFS*EFG*LYSHLH*YTGTST*LPA*GFL*ACGNAGRHSKKGSQG 367
KS*KQSADSGRYEGASFS*EFG*LYSHLH YTGTST*LPA*G ACGNAGRHSKKGS G
Sbjct: 1 KS*KQSADSGRYEGASFS*EFG*LYSHLHKYTGTST*LPA*GC*EACGNAGRHSKKGS*G 180
Query: 366 GCTRMQRDIRELACGWQPSEVRFCVWQIEVLDSKERHMEEAWAVSVDLSR 217
GCTRMQRDIRE A GWQPSEVRFCVWQIEVLDSKERHMEE WAVS D+ +
Sbjct: 181 GCTRMQRDIREFARGWQPSEVRFCVWQIEVLDSKERHMEETWAVSGDMQQ 330
Score = 222 bits (480), Expect(3) = 2e-068
Identities = 95/104 (91%), Positives = 97/104 (93%)
Frame = -1 / +3
Query: 544 KLKAECGFWQI*GS*LQLRVWIALLSFTLIYWNINLIARLRFFISLWQCGKAFQKRKPRR 365
KLKAECGFWQI*GS*LQLRVWIALLSFT IYWNINLIARLR SLWQCGKAFQ+RK RR
Sbjct: 3 KLKAECGFWQI*GS*LQLRVWIALLSFTQIYWNINLIARLRLLRSLWQCGKAFQERKLRR 182
Query: 364 LYKNAKRYTRTRLWMATLRSPVLCLAN*SA*QQRKAYGGSLGSK 233
LYKNAKRYTR R WMATLRSPVLCLAN*SA*QQRKAYGG+LGSK
Sbjct: 183 LYKNAKRYTRIRSWMATLRSPVLCLAN*SA*QQRKAYGGNLGSK 314
Score = 189 bits (407), Expect(2) = 4e-057
Identities = 83/107 (77%), Positives = 83/107 (77%)
Frame = +1 / -1
Query: 226 VHTYCPSFLHMPFFAVKHFNLPNTKPDF*GLPSTSEFSYISLHSCTTSLASFFGMPSRIA 405
V TYCPSFLHMPFFAVKHFNLPNTKPDF*GLPSTSEFSYISLHSCTTSLASF GMPSRIA
Sbjct: 321 VTTYCPSFLHMPFFAVKHFNLPNTKPDF*GLPSTSEFSYISLHSCTTSLASFLGMPSRIA 142
Query: 406 TSL*KTSGGQSG*CSSILV*MRVXXXXXXXXXXXXXXXXXXTLLSTF 546
TS TSGGQSG*CSSI V*MRV TLLSTF
Sbjct: 141 TSFSTTSGGQSG*CSSIFV*MRVKLSKLSAEASSLISARIRTLLSTF 1
Score = 181 bits (390), Expect(2) = 4e-053
Identities = 75/82 (91%), Positives = 79/82 (96%)
Frame = +2 / -2
Query: 299 NRTSEGCHPQASSRISLCILVQPPWLPFLECLPALPQAYKKPQAGNQVDVPVY*CK*E*S 478
NRTSEGCHP+A+SRISLCILVQPP LPFLECLPALPQA ++PQAGNQVDVPVY CK*E*S
Sbjct: 248 NRTSEGCHPRANSRISLCILVQPP*LPFLECLPALPQASQQPQAGNQVDVPVYLCK*E*S 69
Query: 479 YPNSQLKLAPSYLPESALCFQL 544
YPNSQLKLAPSYLPESALCFQL
Sbjct: 68 YPNSQLKLAPSYLPESALCFQL 3
Score = 75.3 bits (158), Expect(3) = 2e-080
Identities = 28/39 (71%), Positives = 30/39 (76%)
Frame = -1 / +1
Query: 193 KDCTFHFSMIILLFFCRCYCWVSRLDYQCVLSLRSKNVY 77
KDCTFHF MIILLFFCRCYCWVSRL Y L+ + VY
Sbjct: 349 KDCTFHF*MIILLFFCRCYCWVSRLYYPVCTQLQEQKVY 465
Score = 55.1 bits (114), Expect(3) = 1e-070
Identities = 23/29 (79%), Positives = 26/29 (89%)
Frame = -3 / +3
Query: 197 RQRLYVSLLYDHSFVLLSMLLLGFTFRLS 111
++RLY+S L DHSFVLLSMLLLGFTF LS
Sbjct: 345 KERLYISFLNDHSFVLLSMLLLGFTFILS 431
Score = 54.2 bits (112), Expect(3) = 5e-075
Identities = 24/29 (82%), Positives = 26/29 (89%)
Frame = +1 / -3
Query: 112 DSLNVKPNSSIDKRTKE*S*RSETYSLCL 198
DS+NVKPNSSIDKRTKE*S R+E YSL L
Sbjct: 430 DSINVKPNSSIDKRTKE*SFRNEMYSLSL 344
Score = 53.8 bits (111), Expect(2) = 4e-057
Identities = 24/27 (88%), Positives = 25/27 (92%)
Frame = +2 / -1
Query: 113 IV*T*NPTVASTKEQKNDHREVKRTVF 193
IV*T*NPTVASTKEQKNDH E+K TVF
Sbjct: 429 IV*T*NPTVASTKEQKNDHLEMKCTVF 349
Score = 52.8 bits (109), Expect(3) = 2e-068
Identities = 23/27 (85%), Positives = 23/27 (85%)
Frame = -2 / +2
Query: 192 KTVRFTSL*SFFCSFVDATVGFHV*TI 112
KTV F S *SFFCSFVDATVGFHV TI
Sbjct: 350 KTVHFISK*SFFCSFVDATVGFHVYTI 430
Score = 48.3 bits (99), Expect(2) = 4e-053
Identities = 22/23 (95%), Positives = 22/23 (95%)
Frame = +3 / -2
Query: 123 RETQQ*HRQKNKRMIIEK*NVQS 191
RETQQ*HRQKNKRMII K*NVQS
Sbjct: 419 RETQQ*HRQKNKRMII*K*NVQS 351
Score = 26.3 bits (51), Expect(3) = 5e-075
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +1 / -1
Query: 49 KILCS*AKWNIH 84
K CS* KWNIH
Sbjct: 495 KFSCS*VKWNIH 460
Score = 24.4 bits (47), Expect(3) = 1e-070
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = -3 / +2
Query: 122 FRLSVCTQLEEQKCIFHFA*LQ 57
+ + ++CIFHF *LQ
Sbjct: 422 YTIQCVRSFRSKRCIFHFT*LQ 487
Score = 24.0 bits (46), Expect(3) = 2e-068
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3 / +1
Query: 110 VCTQLEEQKCIFHF 69
VCTQL+EQK F
Sbjct: 433 VCTQLQEQKVYIPF 474
Score = 23.1 bits (44), Expect(3) = 2e-080
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -1 / +3
Query: 91 SKNVYSTLLSYR 56
+K VYS LLSYR
Sbjct: 453 AKGVYSILLSYR 488
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 867,840,927
Number of Sequences: 832831
Number of extensions: 12217224
Number of successful extensions: 90270
Number of sequences better than 1.0e-020: 2
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 21980531170
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)