TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5351892.2.1
(466 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW347279.1|CW347279 fsbb001f007c05f0 Sorghum methylation... 176 1e-065
gb|CW020886.1|CW020886 104_109_10409223_116_30499 Sorghum m... 176 2e-063
gb|BE361458.1|BE361458 DG1_72_E01.g1_A002 Dark Grown 1 (DG1... 176 2e-061
gb|CW020885.1|CW020885 104_109_10409223_114_30491 Sorghum m... 119 5e-036
gb|CW379945.1|CW379945 fsbb001f059h21f0 Sorghum methylation... 132 3e-030
gb|BG356747.1|BG356747 OV2_9_E02.g1_A002 Ovary 2 (OV2) Sorg... 132 3e-030
gb|CW244441.1|CW244441 104_705_11220597_148_37586_089 Sorgh... 124 9e-028
gb|CW473951.1|CW473951 fsbb001f229j01f0 Sorghum methylation... 124 9e-028
gb|CW214577.1|CW214577 104_646_11194088_148_37053_022 Sorgh... 114 7e-025
gb|CN133092.1|CN133092 OX1_10_C11.b1_A002 Oxidatively-stres... 61 2e-023
gb|CW395999.1|CW395999 fsbb001f084e08f0 Sorghum methylation... 104 1e-021
gb|CW189981.1|CW189981 104_611_11174253_116_36749_089 Sorgh... 102 4e-021
gb|BE598372.1|BE598372 PI1_81_C10.g1_A002 Pathogen induced ... 102 4e-021
>gb|CW347279.1|CW347279 fsbb001f007c05f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f007c05, DNA
sequence
Length = 738
Score = 176 bits (379), Expect(4) = 1e-065
Identities = 67/73 (91%), Positives = 69/73 (94%)
Frame = +3 / +1
Query: 9 AGLKPWIMLKSENHVTPDPPCVRAMSIEPCFHQAPFYDCKARKDTDLGKVVPYVRHCEDV 188
AGLKPWIM KSENHV PDPPC RAMSIEPCFHQAPFYDCKA+KD DLGKVVPYVRHCEDV
Sbjct: 280 AGLKPWIMFKSENHVMPDPPCGRAMSIEPCFHQAPFYDCKAKKDADLGKVVPYVRHCEDV 459
Query: 189 SWGLKIVDQTHL* 227
SWGLKIV+QTHL*
Sbjct: 460 SWGLKIVNQTHL* 498
Score = 158 bits (339), Expect(4) = 2e-059
Identities = 67/74 (90%), Positives = 69/74 (93%)
Frame = -1 / -2
Query: 226 YK*V*STILSPQLTSSQCLT*GTTLPKSVSFLALQS*KGA*WKHGSMDMARTHGGSGVTW 47
YK*V* TI SPQLTSSQCLT*GTTLPKS SF ALQS*KGA*WKHGSMDMAR HGGSG+TW
Sbjct: 497 YK*V*FTIFSPQLTSSQCLT*GTTLPKSASFFALQS*KGA*WKHGSMDMARPHGGSGITW 318
Query: 46 FSDLSMIHGFRPAS 5
FSDL+MIHGFRPAS
Sbjct: 317 FSDLNMIHGFRPAS 276
Score = 151 bits (325), Expect(4) = 7e-055
Identities = 62/72 (86%), Positives = 65/72 (90%)
Frame = -3 / -1
Query: 227 LQMSLIYNLEPPAHVLAVPHVRHYLAQIGVLPRLAVVEGSLMEARLDGHGADARWVWRHV 48
LQMSLIYNL+PPAHVLAVPH+RHYLAQI VL R AVVEGSLMEARL+GHG ARWVW HV
Sbjct: 498 LQMSLIYNLQPPAHVLAVPHIRHYLAQISVLLRFAVVEGSLMEARLNGHGTAARWVWHHV 319
Query: 47 VLRLKHDPRLQA 12
VLRLKHDP LQA
Sbjct: 318 VLRLKHDPWLQA 283
Score = 141 bits (303), Expect(4) = 1e-049
Identities = 62/77 (80%), Positives = 66/77 (85%)
Frame = +2 / +3
Query: 14 PEAVDHA*VGEPRDARPTVRPRHVHRAVLPSSSLLRLQGEEGHRFGQGSALREALRGREL 193
PEA+DH *VGEPRDARPTVRP HVH AVLPS SLLRLQ EEG FGQGSAL EALRGREL
Sbjct: 285 PEAMDHV*VGEPRDARPTVRPCHVH*AVLPSGSLLRLQSEEGR*FGQGSALCEALRGREL 464
Query: 194 GAQDCRSNSFVV*L*SG 244
GA+DC+SNSFV + SG
Sbjct: 465 GAEDCKSNSFVAVIFSG 515
Score = 70.3 bits (147), Expect(2) = 6e-023
Identities = 33/51 (64%), Positives = 35/51 (68%)
Frame = +1 / +2
Query: 13 A*SRGSCLSRRTT*RQTHXXXXXXXXXXXXIKLPSTTARRGRTPIWAR*CL 165
A*S GSCLSRRTT* QTH I+LPSTTA+R RT IWAR*CL
Sbjct: 284 A*SHGSCLSRRTT*CQTHRAAVPCPLSRASIRLPSTTAKRRRTLIWAR*CL 436
Score = 67.0 bits (140), Expect(5) = 3e-031
Identities = 28/34 (82%), Positives = 30/34 (88%)
Frame = -2 / -3
Query: 111 ELDGSTARWTWRGRTVGLASRGSPT*A*STASGR 10
E DGSTA+WTW GRTVGLASRGSPT* *S ASG+
Sbjct: 382 EPDGSTAQWTWHGRTVGLASRGSPT*T*SMASGQ 281
Score = 65.2 bits (136), Expect(4) = 1e-065
Identities = 29/36 (80%), Positives = 32/36 (88%)
Frame = +1 / +3
Query: 322 KGTIQNVFFPSCI*SKCR*LIDRSINLFIL*CQKEE 429
K TIQNVFFPSCI*SKCR*LI+RSINLFIL ++ E
Sbjct: 573 KETIQNVFFPSCI*SKCR*LINRSINLFILMSKERE 680
Score = 64.3 bits (134), Expect(4) = 2e-059
Identities = 25/28 (89%), Positives = 27/28 (96%)
Frame = -3 / -3
Query: 410 RMNRLMDLSINYLHLDQIQEGKNTFCMV 327
RMNRL+DL INYLHLDQIQEGKNTFC+V
Sbjct: 661 RMNRLIDLFINYLHLDQIQEGKNTFCIV 578
Score = 61.6 bits (128), Expect(4) = 7e-055
Identities = 25/33 (75%), Positives = 29/33 (87%)
Frame = -2 / -2
Query: 411 EDEQINGSVYQLSTLGSNTGGKEYILYGSFVSQ 313
++EQIN SVYQLSTLGSNTGGKEYILY F ++
Sbjct: 662 QNEQINRSVYQLSTLGSNTGGKEYILYSFFCTK 564
Score = 61.1 bits (127), Expect(5) = 3e-031
Identities = 26/28 (92%), Positives = 26/28 (92%)
Frame = -1 / -1
Query: 406 *TD*WICLSTIYTWIKYRRERIHFVWFL 323
*TD* ICLSTIYTWIKYRRERIHFV FL
Sbjct: 657 *TD*SICLSTIYTWIKYRRERIHFV*FL 574
Score = 58.8 bits (122), Expect(2) = 6e-023
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = +2 / +1
Query: 332 YKMYSFPPVFDPSVDS**TDPLICSSSDVKRKRNM 436
YKMYSFPPVFDPSVDS**TD LICS K+++++
Sbjct: 583 YKMYSFPPVFDPSVDS**TDRLICSF*CQKKEKHV 687
Score = 57.9 bits (120), Expect(4) = 1e-049
Identities = 26/36 (72%), Positives = 31/36 (86%)
Frame = +3 / +2
Query: 321 QRNHTKCILSLLYLIQV*IVDRQIH*SVHPLMSKGR 428
+RN+TKCILSLLYLIQV*IVD+QI *SVH + + R
Sbjct: 572 KRNYTKCILSLLYLIQV*IVDKQID*SVHSDVKRKR 679
Score = 39.6 bits (80), Expect(4) = 1e-065
Identities = 15/19 (78%), Positives = 15/19 (78%)
Frame = +3 / +2
Query: 228 CSCNLVRTHGRLAC*LGQN 284
CSCN RTH LAC*LGQN
Sbjct: 494 CSCNFFRTHDILAC*LGQN 550
Score = 38.2 bits (77), Expect(4) = 2e-059
Identities = 16/19 (84%), Positives = 18/19 (94%)
Frame = -2 / -2
Query: 285 SSALVSKQVCRES*PDYSY 229
+SALVSKQVCRES* +YSY
Sbjct: 551 NSALVSKQVCRES*KNYSY 495
Score = 34.5 bits (69), Expect(4) = 7e-055
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = -3 / -3
Query: 284 VLP*LASKSAVSPDQITATLQMSL 213
+LP*LASK VSP++ITAT + L
Sbjct: 550 ILP*LASKYVVSPEKITATNEFDL 479
Score = 32.2 bits (64), Expect(5) = 3e-031
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = -1 / -1
Query: 283 FCPS*QASLP*VLTRLQL 230
FCPS*QAS+ *VL +LQL
Sbjct: 549 FCPS*QASMS*VLKKLQL 496
Score = 31.8 bits (63), Expect(4) = 1e-049
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +1 / +3
Query: 229 VAVIWSGLTADLLAN*GR 282
VAVI+SGLT LLAN*GR
Sbjct: 495 VAVIFSGLTTYLLAN*GR 548
Score = 26.7 bits (52), Expect(4) = 1e-065
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +2 / +2
Query: 410 SDVKRKRNMFTM 445
SDVKRKRNMF +
Sbjct: 659 SDVKRKRNMFNV 694
Score = 25.8 bits (50), Expect(4) = 2e-059
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = -2 / -1
Query: 441 VNMFLFLLTSE 409
+NMFLFLLTSE
Sbjct: 690 LNMFLFLLTSE 658
Score = 24.0 bits (46), Expect(5) = 3e-031
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = -2 / -3
Query: 243 PDYSYTTNEFDLQXXXXXXXXXXXXRKAL 157
P+ TNEFDLQ KAL
Sbjct: 514 PEKITATNEFDLQSSAPSSRPRSASHKAL 428
Score = 23.5 bits (45), Expect(4) = 7e-055
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -1 / -3
Query: 439 KHVSLPFDIR 410
KHVSL FDIR
Sbjct: 688 KHVSLSFDIR 659
Score = 22.6 bits (43), Expect(4) = 1e-049
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +1 / +1
Query: 412 *CQKEEKHV 438
*CQK+EKHV
Sbjct: 661 *CQKKEKHV 687
Score = 22.6 bits (43), Expect(5) = 3e-031
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -3 / -2
Query: 440 *TCFSSF*HQ 411
*TCFS F*HQ
Sbjct: 689 *TCFSFF*HQ 660
>gb|CW020886.1|CW020886 104_109_10409223_116_30499 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10409223, DNA
sequence
Length = 663
Score = 176 bits (379), Expect(4) = 2e-063
Identities = 67/73 (91%), Positives = 69/73 (94%)
Frame = +3 / -2
Query: 9 AGLKPWIMLKSENHVTPDPPCVRAMSIEPCFHQAPFYDCKARKDTDLGKVVPYVRHCEDV 188
AGLKPWIM KSENHV PDPPC RAMSIEPCFHQAPFYDCKA+KD DLGKVVPYVRHCEDV
Sbjct: 599 AGLKPWIMFKSENHVMPDPPCGRAMSIEPCFHQAPFYDCKAKKDADLGKVVPYVRHCEDV 420
Query: 189 SWGLKIVDQTHL* 227
SWGLKIV+QTHL*
Sbjct: 419 SWGLKIVNQTHL* 381
Score = 158 bits (339), Expect(4) = 2e-059
Identities = 67/74 (90%), Positives = 69/74 (93%)
Frame = -1 / +1
Query: 226 YK*V*STILSPQLTSSQCLT*GTTLPKSVSFLALQS*KGA*WKHGSMDMARTHGGSGVTW 47
YK*V* TI SPQLTSSQCLT*GTTLPKS SF ALQS*KGA*WKHGSMDMAR HGGSG+TW
Sbjct: 382 YK*V*FTIFSPQLTSSQCLT*GTTLPKSASFFALQS*KGA*WKHGSMDMARPHGGSGITW 561
Query: 46 FSDLSMIHGFRPAS 5
FSDL+MIHGFRPAS
Sbjct: 562 FSDLNMIHGFRPAS 603
Score = 151 bits (325), Expect(4) = 7e-055
Identities = 62/72 (86%), Positives = 65/72 (90%)
Frame = -3 / +3
Query: 227 LQMSLIYNLEPPAHVLAVPHVRHYLAQIGVLPRLAVVEGSLMEARLDGHGADARWVWRHV 48
LQMSLIYNL+PPAHVLAVPH+RHYLAQI VL R AVVEGSLMEARL+GHG ARWVW HV
Sbjct: 381 LQMSLIYNLQPPAHVLAVPHIRHYLAQISVLLRFAVVEGSLMEARLNGHGTAARWVWHHV 560
Query: 47 VLRLKHDPRLQA 12
VLRLKHDP LQA
Sbjct: 561 VLRLKHDPWLQA 596
Score = 141 bits (303), Expect(3) = 2e-050
Identities = 62/77 (80%), Positives = 66/77 (85%)
Frame = +2 / -1
Query: 14 PEAVDHA*VGEPRDARPTVRPRHVHRAVLPSSSLLRLQGEEGHRFGQGSALREALRGREL 193
PEA+DH *VGEPRDARPTVRP HVH AVLPS SLLRLQ EEG FGQGSAL EALRGREL
Sbjct: 594 PEAMDHV*VGEPRDARPTVRPCHVH*AVLPSGSLLRLQSEEGR*FGQGSALCEALRGREL 415
Query: 194 GAQDCRSNSFVV*L*SG 244
GA+DC+SNSFV + SG
Sbjct: 414 GAEDCKSNSFVAVIFSG 364
Score = 70.3 bits (147), Expect(2) = 5e-023
Identities = 33/51 (64%), Positives = 35/51 (68%)
Frame = +1 / -3
Query: 13 A*SRGSCLSRRTT*RQTHXXXXXXXXXXXXIKLPSTTARRGRTPIWAR*CL 165
A*S GSCLSRRTT* QTH I+LPSTTA+R RT IWAR*CL
Sbjct: 595 A*SHGSCLSRRTT*CQTHRAAVPCPLSRASIRLPSTTAKRRRTLIWAR*CL 443
Score = 67.0 bits (140), Expect(5) = 2e-031
Identities = 28/34 (82%), Positives = 30/34 (88%)
Frame = -2 / +2
Query: 111 ELDGSTARWTWRGRTVGLASRGSPT*A*STASGR 10
E DGSTA+WTW GRTVGLASRGSPT* *S ASG+
Sbjct: 497 EPDGSTAQWTWHGRTVGLASRGSPT*T*SMASGQ 598
Score = 65.2 bits (136), Expect(3) = 2e-050
Identities = 29/36 (80%), Positives = 32/36 (88%)
Frame = +1 / -1
Query: 322 KGTIQNVFFPSCI*SKCR*LIDRSINLFIL*CQKEE 429
K TIQNVFFPSCI*SKCR*LI+RSINLFIL ++ E
Sbjct: 306 KETIQNVFFPSCI*SKCR*LINRSINLFILMSKERE 199
Score = 64.3 bits (134), Expect(4) = 2e-059
Identities = 25/28 (89%), Positives = 27/28 (96%)
Frame = -3 / +2
Query: 410 RMNRLMDLSINYLHLDQIQEGKNTFCMV 327
RMNRL+DL INYLHLDQIQEGKNTFC+V
Sbjct: 218 RMNRLIDLFINYLHLDQIQEGKNTFCIV 301
Score = 61.6 bits (128), Expect(4) = 7e-055
Identities = 25/33 (75%), Positives = 29/33 (87%)
Frame = -2 / +1
Query: 411 EDEQINGSVYQLSTLGSNTGGKEYILYGSFVSQ 313
++EQIN SVYQLSTLGSNTGGKEYILY F ++
Sbjct: 217 QNEQINRSVYQLSTLGSNTGGKEYILYSFFCTK 315
Score = 61.1 bits (127), Expect(5) = 2e-031
Identities = 26/28 (92%), Positives = 26/28 (92%)
Frame = -1 / +3
Query: 406 *TD*WICLSTIYTWIKYRRERIHFVWFL 323
*TD* ICLSTIYTWIKYRRERIHFV FL
Sbjct: 222 *TD*SICLSTIYTWIKYRRERIHFV*FL 305
Score = 58.8 bits (122), Expect(2) = 5e-023
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = +2 / -2
Query: 332 YKMYSFPPVFDPSVDS**TDPLICSSSDVKRKRNM 436
YKMYSFPPVFDPSVDS**TD LICS K+++++
Sbjct: 296 YKMYSFPPVFDPSVDS**TDRLICSF*CQKKEKHV 192
Score = 57.9 bits (120), Expect(4) = 2e-063
Identities = 26/36 (72%), Positives = 31/36 (86%)
Frame = +3 / -3
Query: 321 QRNHTKCILSLLYLIQV*IVDRQIH*SVHPLMSKGR 428
+RN+TKCILSLLYLIQV*IVD+QI *SVH + + R
Sbjct: 307 KRNYTKCILSLLYLIQV*IVDKQID*SVHSDVKRKR 200
Score = 39.6 bits (80), Expect(4) = 2e-063
Identities = 15/19 (78%), Positives = 15/19 (78%)
Frame = +3 / -3
Query: 228 CSCNLVRTHGRLAC*LGQN 284
CSCN RTH LAC*LGQN
Sbjct: 385 CSCNFFRTHDILAC*LGQN 329
Score = 38.2 bits (77), Expect(4) = 2e-059
Identities = 16/19 (84%), Positives = 18/19 (94%)
Frame = -2 / +1
Query: 285 SSALVSKQVCRES*PDYSY 229
+SALVSKQVCRES* +YSY
Sbjct: 328 NSALVSKQVCRES*KNYSY 384
Score = 34.5 bits (69), Expect(4) = 7e-055
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = -3 / +2
Query: 284 VLP*LASKSAVSPDQITATLQMSL 213
+LP*LASK VSP++ITAT + L
Sbjct: 329 ILP*LASKYVVSPEKITATNEFDL 400
Score = 32.2 bits (64), Expect(5) = 2e-031
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = -1 / +3
Query: 283 FCPS*QASLP*VLTRLQL 230
FCPS*QAS+ *VL +LQL
Sbjct: 330 FCPS*QASMS*VLKKLQL 383
Score = 31.8 bits (63), Expect(3) = 2e-050
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +1 / -1
Query: 229 VAVIWSGLTADLLAN*GR 282
VAVI+SGLT LLAN*GR
Sbjct: 384 VAVIFSGLTTYLLAN*GR 331
Score = 26.7 bits (52), Expect(4) = 2e-063
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +2 / -3
Query: 410 SDVKRKRNMFTM 445
SDVKRKRNMF +
Sbjct: 220 SDVKRKRNMFNV 185
Score = 25.8 bits (50), Expect(4) = 2e-059
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = -2 / +3
Query: 441 VNMFLFLLTSE 409
+NMFLFLLTSE
Sbjct: 189 LNMFLFLLTSE 221
Score = 24.0 bits (46), Expect(5) = 2e-031
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = -2 / +2
Query: 243 PDYSYTTNEFDLQXXXXXXXXXXXXRKAL 157
P+ TNEFDLQ KAL
Sbjct: 365 PEKITATNEFDLQSSAPSSRPRSASHKAL 451
Score = 23.5 bits (45), Expect(4) = 7e-055
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -1 / +2
Query: 439 KHVSLPFDIR 410
KHVSL FDIR
Sbjct: 191 KHVSLSFDIR 220
Score = 22.6 bits (43), Expect(5) = 2e-031
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -3 / +1
Query: 440 *TCFSSF*HQ 411
*TCFS F*HQ
Sbjct: 190 *TCFSFF*HQ 219
>gb|BE361458.1|BE361458 DG1_72_E01.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 613
Score = 176 bits (379), Expect(3) = 2e-061
Identities = 67/73 (91%), Positives = 69/73 (94%)
Frame = +3 / +2
Query: 9 AGLKPWIMLKSENHVTPDPPCVRAMSIEPCFHQAPFYDCKARKDTDLGKVVPYVRHCEDV 188
AGLKPWIM KSENHV PDPPC RAMSIEPCFHQAPFYDCKA+KD DLGKVVPYVRHCEDV
Sbjct: 215 AGLKPWIMFKSENHVMPDPPCGRAMSIEPCFHQAPFYDCKAKKDADLGKVVPYVRHCEDV 394
Query: 189 SWGLKIVDQTHL* 227
SWGLKIV+QTHL*
Sbjct: 395 SWGLKIVNQTHL* 433
Score = 158 bits (339), Expect(3) = 3e-056
Identities = 67/74 (90%), Positives = 69/74 (93%)
Frame = -1 / -2
Query: 226 YK*V*STILSPQLTSSQCLT*GTTLPKSVSFLALQS*KGA*WKHGSMDMARTHGGSGVTW 47
YK*V* TI SPQLTSSQCLT*GTTLPKS SF ALQS*KGA*WKHGSMDMAR HGGSG+TW
Sbjct: 432 YK*V*FTIFSPQLTSSQCLT*GTTLPKSASFFALQS*KGA*WKHGSMDMARPHGGSGITW 253
Query: 46 FSDLSMIHGFRPAS 5
FSDL+MIHGFRPAS
Sbjct: 252 FSDLNMIHGFRPAS 211
Score = 151 bits (325), Expect(3) = 1e-052
Identities = 62/72 (86%), Positives = 65/72 (90%)
Frame = -3 / -1
Query: 227 LQMSLIYNLEPPAHVLAVPHVRHYLAQIGVLPRLAVVEGSLMEARLDGHGADARWVWRHV 48
LQMSLIYNL+PPAHVLAVPH+RHYLAQI VL R AVVEGSLMEARL+GHG ARWVW HV
Sbjct: 433 LQMSLIYNLQPPAHVLAVPHIRHYLAQISVLLRFAVVEGSLMEARLNGHGTAARWVWHHV 254
Query: 47 VLRLKHDPRLQA 12
VLRLKHDP LQA
Sbjct: 253 VLRLKHDPWLQA 218
Score = 141 bits (303), Expect(3) = 2e-048
Identities = 62/77 (80%), Positives = 66/77 (85%)
Frame = +2 / +1
Query: 14 PEAVDHA*VGEPRDARPTVRPRHVHRAVLPSSSLLRLQGEEGHRFGQGSALREALRGREL 193
PEA+DH *VGEPRDARPTVRP HVH AVLPS SLLRLQ EEG FGQGSAL EALRGREL
Sbjct: 220 PEAMDHV*VGEPRDARPTVRPCHVH*AVLPSGSLLRLQSEEGR*FGQGSALCEALRGREL 399
Query: 194 GAQDCRSNSFVV*L*SG 244
GA+DC+SNSFV + SG
Sbjct: 400 GAEDCKSNSFVAVIFSG 450
Score = 70.3 bits (147), Expect(2) = 3e-022
Identities = 33/51 (64%), Positives = 35/51 (68%)
Frame = +1 / +3
Query: 13 A*SRGSCLSRRTT*RQTHXXXXXXXXXXXXIKLPSTTARRGRTPIWAR*CL 165
A*S GSCLSRRTT* QTH I+LPSTTA+R RT IWAR*CL
Sbjct: 219 A*SHGSCLSRRTT*CQTHRAAVPCPLSRASIRLPSTTAKRRRTLIWAR*CL 371
Score = 67.0 bits (140), Expect(4) = 3e-028
Identities = 28/34 (82%), Positives = 30/34 (88%)
Frame = -2 / -3
Query: 111 ELDGSTARWTWRGRTVGLASRGSPT*A*STASGR 10
E DGSTA+WTW GRTVGLASRGSPT* *S ASG+
Sbjct: 317 EPDGSTAQWTWHGRTVGLASRGSPT*T*SMASGQ 216
Score = 61.6 bits (128), Expect(3) = 3e-056
Identities = 26/37 (70%), Positives = 28/37 (75%)
Frame = -2 / -2
Query: 423 LLTSEDEQINGSVYQLSTLGSNTGGKEYILYGSFVSQ 313
L DEQ N SVYQLSTLGSNTGGKEYILY F ++
Sbjct: 609 LAFDSDEQFNRSVYQLSTLGSNTGGKEYILYSFFCTK 499
Score = 59.7 bits (124), Expect(3) = 2e-061
Identities = 26/29 (89%), Positives = 27/29 (93%)
Frame = +1 / +1
Query: 322 KGTIQNVFFPSCI*SKCR*LIDRSINLFI 408
K TIQNVFFPSCI*SKCR*LI+RSI LFI
Sbjct: 508 KETIQNVFFPSCI*SKCR*LINRSIKLFI 594
Score = 59.7 bits (124), Expect(3) = 1e-052
Identities = 23/28 (82%), Positives = 26/28 (92%)
Frame = -3 / -3
Query: 410 RMNRLMDLSINYLHLDQIQEGKNTFCMV 327
+MN L+DL INYLHLDQIQEGKNTFC+V
Sbjct: 596 QMNSLIDLFINYLHLDQIQEGKNTFCIV 513
Score = 58.3 bits (121), Expect(3) = 2e-048
Identities = 25/32 (78%), Positives = 26/32 (81%)
Frame = +2 / +2
Query: 332 YKMYSFPPVFDPSVDS**TDPLICSSSDVKRK 427
YKMYSFPPVFDPSVDS**TD L CSS R+
Sbjct: 518 YKMYSFPPVFDPSVDS**TDRLNCSSESKARE 613
Score = 57.0 bits (118), Expect(4) = 3e-028
Identities = 25/28 (89%), Positives = 25/28 (89%)
Frame = -1 / -1
Query: 406 *TD*WICLSTIYTWIKYRRERIHFVWFL 323
*T * ICLSTIYTWIKYRRERIHFV FL
Sbjct: 592 *TV*SICLSTIYTWIKYRRERIHFV*FL 509
Score = 56.1 bits (116), Expect(2) = 3e-022
Identities = 24/29 (82%), Positives = 28/29 (96%)
Frame = +3 / +3
Query: 321 QRNHTKCILSLLYLIQV*IVDRQIH*SVH 407
+RN+TKCILSLLYLIQV*IVD+QI *+VH
Sbjct: 507 KRNYTKCILSLLYLIQV*IVDKQID*TVH 593
Score = 39.6 bits (80), Expect(3) = 2e-061
Identities = 15/19 (78%), Positives = 15/19 (78%)
Frame = +3 / +3
Query: 228 CSCNLVRTHGRLAC*LGQN 284
CSCN RTH LAC*LGQN
Sbjct: 429 CSCNFFRTHDILAC*LGQN 485
Score = 38.2 bits (77), Expect(3) = 3e-056
Identities = 16/19 (84%), Positives = 18/19 (94%)
Frame = -2 / -2
Query: 285 SSALVSKQVCRES*PDYSY 229
+SALVSKQVCRES* +YSY
Sbjct: 486 NSALVSKQVCRES*KNYSY 430
Score = 34.5 bits (69), Expect(3) = 1e-052
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = -3 / -3
Query: 284 VLP*LASKSAVSPDQITATLQMSL 213
+LP*LASK VSP++ITAT + L
Sbjct: 485 ILP*LASKYVVSPEKITATNEFDL 414
Score = 32.2 bits (64), Expect(4) = 3e-028
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = -1 / -1
Query: 283 FCPS*QASLP*VLTRLQL 230
FCPS*QAS+ *VL +LQL
Sbjct: 484 FCPS*QASMS*VLKKLQL 431
Score = 31.8 bits (63), Expect(3) = 2e-048
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +1 / +1
Query: 229 VAVIWSGLTADLLAN*GR 282
VAVI+SGLT LLAN*GR
Sbjct: 430 VAVIFSGLTTYLLAN*GR 483
Score = 24.0 bits (46), Expect(4) = 3e-028
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = -2 / -3
Query: 243 PDYSYTTNEFDLQXXXXXXXXXXXXRKAL 157
P+ TNEFDLQ KAL
Sbjct: 449 PEKITATNEFDLQSSAPSSRPRSASHKAL 363
>gb|CW020885.1|CW020885 104_109_10409223_114_30491 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10409223, DNA
sequence
Length = 716
Score = 119 bits (254), Expect(2) = 5e-036
Identities = 44/49 (89%), Positives = 45/49 (91%)
Frame = +3 / +3
Query: 9 AGLKPWIMLKSENHVTPDPPCVRAMSIEPCFHQAPFYDCKARKDTDLGK 155
AGLKPWIM KSENHV PDPPC RAMSIEPCFHQAPFYDCKA+KD DLGK
Sbjct: 510 AGLKPWIMFKSENHVMPDPPCGRAMSIEPCFHQAPFYDCKAKKDADLGK 656
Score = 113 bits (241), Expect(2) = 1e-033
Identities = 45/50 (90%), Positives = 47/50 (94%)
Frame = -1 / -2
Query: 154 LPKSVSFLALQS*KGA*WKHGSMDMARTHGGSGVTWFSDLSMIHGFRPAS 5
LPKS SF ALQS*KGA*WKHGSMDMAR HGGSG+TWFSDL+MIHGFRPAS
Sbjct: 655 LPKSASFFALQS*KGA*WKHGSMDMARPHGGSGITWFSDLNMIHGFRPAS 506
Score = 92.7 bits (196), Expect(2) = 2e-025
Identities = 39/48 (81%), Positives = 40/48 (83%)
Frame = -3 / -1
Query: 155 LAQIGVLPRLAVVEGSLMEARLDGHGADARWVWRHVVLRLKHDPRLQA 12
LAQI V R AVVEGSLMEARL+GHG ARWVW HVVLRLKHDP LQA
Sbjct: 656 LAQISVFLRFAVVEGSLMEARLNGHGTAARWVWHHVVLRLKHDPWLQA 513
Score = 87.7 bits (185), Expect(2) = 6e-022
Identities = 38/47 (80%), Positives = 39/47 (82%)
Frame = +2 / +2
Query: 14 PEAVDHA*VGEPRDARPTVRPRHVHRAVLPSSSLLRLQGEEGHRFGQ 154
PEA+DH *VGEPRDARPTVRP HVH AVLPS SLLRLQ EE FGQ
Sbjct: 515 PEAMDHV*VGEPRDARPTVRPCHVH*AVLPSGSLLRLQSEERR*FGQ 655
Score = 52.4 bits (108), Expect(2) = 5e-036
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +3 / +2
Query: 150 GKVVPYVRHCEDVSWGLKIV 209
G+VVPYVRHCEDVSWGLKIV
Sbjct: 650 GQVVPYVRHCEDVSWGLKIV 709
Score = 50.1 bits (103), Expect(2) = 1e-033
Identities = 17/19 (89%), Positives = 19/19 (100%)
Frame = -3 / -2
Query: 209 YNLEPPAHVLAVPHVRHYL 153
YNL+PPAHVLAVPH+RHYL
Sbjct: 709 YNLQPPAHVLAVPHIRHYL 653
Score = 43.2 bits (88), Expect(2) = 2e-025
Identities = 18/20 (90%), Positives = 18/20 (90%)
Frame = -1 / -3
Query: 208 TILSPQLTSSQCLT*GTTLP 149
TI SPQLTSSQCLT*GTT P
Sbjct: 708 TIFSPQLTSSQCLT*GTTCP 649
Score = 36.8 bits (74), Expect(2) = 6e-022
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +2 / +1
Query: 158 SALREALRGRELGAQDC 208
SAL EALRGRELGA+DC
Sbjct: 658 SALCEALRGRELGAEDC 708
>gb|CW379945.1|CW379945 fsbb001f059h21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f059h21, DNA
sequence
Length = 715
Score = 132 bits (283), Expect = 3e-030
Identities = 48/73 (65%), Positives = 56/73 (76%)
Frame = +3 / -3
Query: 9 AGLKPWIMLKSENHVTPDPPCVRAMSIEPCFHQAPFYDCKARKDTDLGKVVPYVRHCEDV 188
+G K W+M K EN P+PPC + MSIEPCFH PFYDCK RK TD GK+VP+VRHCED+
Sbjct: 362 SGSKTWLMFKPENRTAPNPPCRQVMSIEPCFHAPPFYDCKTRKGTDTGKLVPHVRHCEDM 183
Query: 189 SWGLKIVDQTHL* 227
SWGLK+VD L*
Sbjct: 182 SWGLKLVDTGEL* 144
>gb|BG356747.1|BG356747 OV2_9_E02.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 535
Score = 132 bits (283), Expect = 3e-030
Identities = 48/73 (65%), Positives = 56/73 (76%)
Frame = +3 / +1
Query: 9 AGLKPWIMLKSENHVTPDPPCVRAMSIEPCFHQAPFYDCKARKDTDLGKVVPYVRHCEDV 188
+G K W+M K EN P+PPC + MSIEPCFH PFYDCK RK TD GK+VP+VRHCED+
Sbjct: 235 SGSKTWLMFKPENRTAPNPPCRQVMSIEPCFHAPPFYDCKTRKGTDTGKLVPHVRHCEDM 414
Query: 189 SWGLKIVDQTHL* 227
SWGLK+VD L*
Sbjct: 415 SWGLKLVDTGEL* 453
>gb|CW244441.1|CW244441 104_705_11220597_148_37586_089 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11220597, DNA
sequence
Length = 629
Score = 124 bits (265), Expect = 9e-028
Identities = 43/66 (65%), Positives = 52/66 (78%)
Frame = +3 / -2
Query: 12 GLKPWIMLKSENHVTPDPPCVRAMSIEPCFHQAPFYDCKARKDTDLGKVVPYVRHCEDVS 191
GL PWIM + ENH TP PPC RA S+EPC H PFYDC+A+ D GK+VP+V+HCED+S
Sbjct: 232 GLTPWIMFRPENHTTPYPPCRRAKSMEPCMHGPPFYDCRAKHGADTGKLVPHVQHCEDMS 53
Query: 192 WGLKIV 209
WGLK+V
Sbjct: 52 WGLKLV 35
>gb|CW473951.1|CW473951 fsbb001f229j01f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f229j01, DNA
sequence
Length = 543
Score = 124 bits (265), Expect = 9e-028
Identities = 43/66 (65%), Positives = 52/66 (78%)
Frame = +3 / -1
Query: 12 GLKPWIMLKSENHVTPDPPCVRAMSIEPCFHQAPFYDCKARKDTDLGKVVPYVRHCEDVS 191
GL PWIM + ENH TP PPC RA S+EPC H PFYDC+A+ D GK+VP+V+HCED+S
Sbjct: 495 GLTPWIMFRPENHTTPYPPCRRAKSMEPCMHGPPFYDCRAKHGADTGKLVPHVQHCEDMS 316
Query: 192 WGLKIV 209
WGLK+V
Sbjct: 315 WGLKLV 298
>gb|CW214577.1|CW214577 104_646_11194088_148_37053_022 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11194088, DNA
sequence
Length = 669
Score = 114 bits (244), Expect = 7e-025
Identities = 39/61 (63%), Positives = 47/61 (77%)
Frame = +3 / -2
Query: 12 GLKPWIMLKSENHVTPDPPCVRAMSIEPCFHQAPFYDCKARKDTDLGKVVPYVRHCEDVS 191
GL PWIM + ENH TP PPC RA S+EPC H PFYDC+A+ D GK+VP+V+HCED+S
Sbjct: 185 GLTPWIMFRPENHTTPYPPCRRAKSMEPCMHGPPFYDCRAKHGADTGKLVPHVQHCEDMS 6
Query: 192 W 194
W
Sbjct: 5 W 3
>gb|CN133092.1|CN133092 OX1_10_C11.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_10_C11_A002 3', mRNA sequence
Length = 239
Score = 60.6 bits (126), Expect(4) = 2e-023
Identities = 25/32 (78%), Positives = 28/32 (87%)
Frame = -2 / -3
Query: 408 DEQINGSVYQLSTLGSNTGGKEYILYGSFVSQ 313
+EQIN SVYQLSTLGSNTGGKEYILY F ++
Sbjct: 204 NEQINRSVYQLSTLGSNTGGKEYILYSFFCTK 109
Score = 60.2 bits (125), Expect(4) = 2e-023
Identities = 26/29 (89%), Positives = 27/29 (93%)
Frame = +1 / +1
Query: 322 KGTIQNVFFPSCI*SKCR*LIDRSINLFI 408
K TIQNVFFPSCI SKCR*LI+RSINLFI
Sbjct: 118 KETIQNVFFPSCIGSKCR*LINRSINLFI 204
Score = 38.2 bits (77), Expect(4) = 2e-023
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = +3 / +3
Query: 228 CSCNLVRTHGRLAC*LGQN 284
CSCN RTH LAC*+GQN
Sbjct: 39 CSCNFFRTHDILAC*VGQN 95
Score = 36.8 bits (74), Expect(4) = 2e-023
Identities = 15/19 (78%), Positives = 18/19 (94%)
Frame = -2 / -3
Query: 285 SSALVSKQVCRES*PDYSY 229
+SAL+SKQVCRES* +YSY
Sbjct: 96 NSALLSKQVCRES*KNYSY 40
Score = 35.4 bits (71), Expect(4) = 2e-023
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = -3 / -2
Query: 227 LQMSLIYNLEPPAH 186
LQMSLIYNL+PPAH
Sbjct: 43 LQMSLIYNLQPPAH 2
Score = 35.4 bits (71), Expect(4) = 2e-023
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = +2 / +1
Query: 185 RELGAQDCRSNSFVV*L*SG 244
RELGA+DC+SNSFV + SG
Sbjct: 1 RELGAEDCKSNSFVAVIFSG 60
Score = 25.4 bits (49), Expect(4) = 2e-023
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -2 / -2
Query: 438 NMFLFLLTSE 409
NMFLFLLTSE
Sbjct: 232 NMFLFLLTSE 203
Score = 24.0 bits (46), Expect(4) = 2e-023
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +2 / +3
Query: 410 SDVKRKRNMFTM 445
SDVKRKRNM +
Sbjct: 204 SDVKRKRNMLNV 239
>gb|CW395999.1|CW395999 fsbb001f084e08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f084e08, DNA
sequence
Length = 619
Score = 104 bits (221), Expect = 1e-021
Identities = 34/60 (56%), Positives = 45/60 (75%)
Frame = +3 / +1
Query: 39 SENHVTPDPPCVRAMSIEPCFHQAPFYDCKARKDTDLGKVVPYVRHCEDVSWGLKIVDQT 218
+E H P+PPC RA+S+EPCFH YDC R+D +L KV PY+R C DVSWG+K+V+Q+
Sbjct: 295 TEGHAAPEPPCQRALSVEPCFHSPSSYDCTVRRDVELDKVTPYIRRCVDVSWGIKLVNQS 474
>gb|CW189981.1|CW189981 104_611_11174253_116_36749_089 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11174253, DNA
sequence
Length = 706
Score = 102 bits (217), Expect = 4e-021
Identities = 33/60 (55%), Positives = 45/60 (75%)
Frame = +3 / -2
Query: 39 SENHVTPDPPCVRAMSIEPCFHQAPFYDCKARKDTDLGKVVPYVRHCEDVSWGLKIVDQT 218
+E P+PPC RA+S+EPCFH +Y+C R+D DL KV PY+R C DVSWG+K+V+Q+
Sbjct: 369 TEGQAAPEPPCQRALSVEPCFHSPSYYNCTVRRDVDLDKVTPYIRRCVDVSWGIKLVNQS 190
>gb|BE598372.1|BE598372 PI1_81_C10.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 606
Score = 102 bits (217), Expect = 4e-021
Identities = 33/60 (55%), Positives = 45/60 (75%)
Frame = +3 / +3
Query: 39 SENHVTPDPPCVRAMSIEPCFHQAPFYDCKARKDTDLGKVVPYVRHCEDVSWGLKIVDQT 218
+E P+PPC RA+S+EPCFH +Y+C R+D DL KV PY+R C DVSWG+K+V+Q+
Sbjct: 342 TEGQAAPEPPCQRALSVEPCFHSPSYYNCTVRRDVDLDKVTPYIRRCVDVSWGIKLVNQS 521
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 527,182,055
Number of Sequences: 832831
Number of extensions: 6554706
Number of successful extensions: 115925
Number of sequences better than 1.0e-020: 15
length of database: 163,786,556
effective HSP length: 52
effective length of database: 120,479,344
effective search space used: 12288893088
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)