TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4790360.2.1
(667 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM317408.1|BM317408 LG1_261_H08.g9_A002 Light Grown 1 (L... 260 3e-089
gb|BF656938.1|BF656938 OV2_22_H05.g1_A002 Ovary 2 (OV2) Sor... 199 1e-072
gb|CW132946.1|CW132946 104_516_11116489_148_34802_007 Sorgh... 112 5e-047
gb|CW333022.1|CW333022 104_830_11481721_148_36039_001 Sorgh... 112 5e-047
gb|AW286139.2|AW286139 LG1_261_H08.b1_A002 Light Grown 1 (L... 181 1e-044
gb|CW150519.1|CW150519 104_551_11143453_116_36307_063 Sorgh... 112 2e-044
gb|BZ336865.1|BZ336865 hz39f11.b1 WGS-SbicolorF (JM107 adap... 124 3e-042
gb|CW228767.1|CW228767 104_668_11206561_148_37248_001 Sorgh... 77 3e-034
gb|BE360608.1|BE360608 DG1_64_B12.g1_A002 Dark Grown 1 (DG1... 135 5e-031
gb|CD430969.1|CD430969 ETH1_6_D05.b1_A002 Ethylene-treated ... 135 5e-031
gb|CW150520.1|CW150520 104_551_11143453_148_36308_063 Sorgh... 125 8e-028
gb|CW477861.1|CW477861 fsbb001f235g16f0 Sorghum methylation... 124 1e-027
gb|CW477862.1|CW477862 fsbb001f235g16k0 Sorghum methylation... 124 1e-027
gb|CW333021.1|CW333021 104_830_11481721_116_36040_001 Sorgh... 66 1e-024
>gb|BM317408.1|BM317408 LG1_261_H08.g9_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 662
Score = 260 bits (563), Expect(5) = 3e-089
Identities = 106/123 (86%), Positives = 115/123 (93%)
Frame = -1 / -3
Query: 418 IG*GHRSTIRSVVCSPTKKSSILRLGHLSCHSWTTCAFFSFMEL*HFYLWVA*T*AFWDV 239
+G G RST+RSVVC+PTKK+SILRLGHLSC+SWTTCA FS M+L*HFYLWVA* *AFW+V
Sbjct: 369 LGEGQRSTMRSVVCAPTKKTSILRLGHLSCNSWTTCALFSLMKL*HFYLWVA*P*AFWNV 190
Query: 238 PNSN*RLRAVRFTKCMCVLMVDVHSKHPRSNCNVLVAEHTETVVSQCNQASHHVS**SIN 59
PNSN*RLRAV FTKCMCVLMVDVH KHPRSNCN+LVA+HTETVVSQ NQASHHVS**SIN
Sbjct: 189 PNSN*RLRAVSFTKCMCVLMVDVHGKHPRSNCNILVAKHTETVVSQSNQASHHVS**SIN 10
Query: 58 WPI 50
WPI
Sbjct: 9 WPI 1
Score = 248 bits (537), Expect(5) = 3e-087
Identities = 99/119 (83%), Positives = 102/119 (85%)
Frame = +2 / +1
Query: 50 YGPIYXXXXXXXXXXXXXRNNSFRMFSNEDVTIGSWMLAMNVNHENTHALCEPDCTESSI 229
YGPIY RNNSFRMFSNEDVTIGSWMLAMNVNHENTHALCE DCTESS+
Sbjct: 1 YGPIYALSADVVASLVALRNNSFRMFSNEDVTIGSWMLAMNVNHENTHALCEADCTESSV 180
Query: 230 AVWDIPKCSGLCHPEVKMLELHERKECTGGPTVAAEVSESED**FLGWGTNYGSDS*PV 406
AVWDIPKCSGLCHPEVKMLELH+RKECTGGPTVAAEVSESED* FLGW TNYGS S*P+
Sbjct: 181 AVWDIPKCSGLCHPEVKMLELHQRKECTGGPTVAAEVSESED*CFLGWSTNYGSHS*PL 357
Score = 241 bits (521), Expect(3) = 6e-078
Identities = 106/122 (86%), Positives = 108/122 (88%)
Frame = +3 / +2
Query: 51 MGQFMLYQLTWWLAWLHCETTVSVCSATRTLQLDRGCLL*TSTMRTHMHFVNLTARSLQL 230
MGQFMLYQLTWWLAWL ETTVSVC ATR LQLD GCL *TSTMRTHMHFV LTARSLQL
Sbjct: 2 MGQFMLYQLTWWLAWLL*ETTVSVCLATRMLQLDLGCLP*TSTMRTHMHFVKLTARSLQL 181
Query: 231 LFGTSQNAQVYATQR*KC*SSMKEKNAQVVQLWQLRCPSLRIDDFLVGEQTTDLIVDLCP 410
LFGT QNAQ YATQR*KC*S +KEK+AQVVQL QLRCPSLRID FLVG QTTDLIVDLCP
Sbjct: 182 LFGTFQNAQGYATQR*KC*SFIKEKSAQVVQLLQLRCPSLRIDVFLVGAQTTDLIVDLCP 361
Query: 411 HP 416
P
Sbjct: 362 SP 367
Score = 239 bits (517), Expect(3) = 4e-079
Identities = 100/118 (84%), Positives = 105/118 (88%)
Frame = -3 / -2
Query: 404 QVNYQIRSLFPNQEIINPQTRTPQLPQLDHLCILFFHGALAFLPLGGIDLSILGCPKQQL 225
+VNY+IRSL NQE INPQTRTPQL QLDHLC LFF ALAFLPLGGI LSIL CPKQQL
Sbjct: 355 EVNYEIRSLCSNQENINPQTRTPQLQQLDHLCTLFFDEALAFLPLGGIALSILECPKQQL 176
Query: 224 KTPCSQVHKVHVCSHG*RS*QASTIQL*RPRC*TYGNCCFAMQPS*PPRQLIKHKLAH 51
KTPCSQ+HKVHVCSHG*RS QAS IQL* PRC*TYGNCCF+ QPS*PPRQLI+HKLAH
Sbjct: 175 KTPCSQLHKVHVCSHG*RSWQASKIQL*HPRC*TYGNCCFSKQPS*PPRQLIEHKLAH 2
Score = 235 bits (508), Expect(3) = 3e-075
Identities = 98/117 (83%), Positives = 105/117 (89%)
Frame = +1 / +3
Query: 52 WANLCFIS*RGG*LGCIAKQQFPYVQQRGRYNWIVDACYERQP*EHTCTL*T*LHGVFNC 231
WANLC IS*RGG*LGC KQQFPYV QRG YNWI+DAC+ERQP*EHTCTL*+*LHGVF+C
Sbjct: 3 WANLCSIS*RGG*LGCFEKQQFPYV*QRGCYNWILDACHERQP*EHTCTL*S*LHGVFSC 182
Query: 232 CLGHPKMLRSMPPRGKNARAP*KKRMHRWSNCGS*GVRV*GLMISWLGNKLRI**LT 402
CLGH KMLR+MPPRGKNARA KKR+HRWSNC S*GVRV*GLM SWL +KLRI *LT
Sbjct: 183 CLGHSKMLRAMPPRGKNARASSKKRVHRWSNCCS*GVRV*GLMFSWLEHKLRIS*LT 353
Score = 214 bits (461), Expect(2) = 6e-068
Identities = 95/117 (81%), Positives = 97/117 (82%)
Frame = -2 / -1
Query: 402 GQLSDP*FVPQPRNHQSSDSDTSAATVGPPVHXXXXXXXXXXXSGWHRPEHFGMSQTAIE 223
GQL DP*FV QPR HQSSDSDTSAATVGPPVH SGWH PEHFGMSQTA E
Sbjct: 353 GQL*DP*FVLQPRKHQSSDSDTSAATVGPPVHSFL**SSSIFTSGWHSPEHFGMSQTATE 174
Query: 222 DSVQSGSQSACVFSWLTFIASIHDPIVTSSLLNIRKLLFRNATKLATTSADKA*IGP 52
DSVQS SQSACVFSWLTF+ASI DPIVTSSLLNIRKLLF ATKLATTSAD+A*IGP
Sbjct: 173 DSVQSASQSACVFSWLTFMASIQDPIVTSSLLNIRKLLFLKATKLATTSADRA*IGP 3
Score = 66.1 bits (138), Expect(5) = 3e-087
Identities = 24/28 (85%), Positives = 27/28 (96%)
Frame = +3 / +3
Query: 408 PHPIDVFGVFI*FIRRNHCGSTAQGTYS 491
PHP+DVFGVFI*FIR NHCGSTA+GTY+
Sbjct: 360 PHPVDVFGVFI*FIRYNHCGSTAEGTYT 443
Score = 65.2 bits (136), Expect(2) = 6e-068
Identities = 34/56 (60%), Positives = 37/56 (66%)
Frame = -1 / -2
Query: 574 AREAMKAAVTRMLNENAFATALGYDASQL*VP*AVLPQ*LRLMNQMNTPNTSIG*G 407
A+ AMKAAVTRM + +*VP AVLPQ*L LMNQMNTPNTS G*G
Sbjct: 526 AKGAMKAAVTRMFE*ECLCYSTRL*RQPV*VPSAVLPQ*LYLMNQMNTPNTSTG*G 359
Score = 60.6 bits (126), Expect(5) = 3e-089
Identities = 23/27 (85%), Positives = 23/27 (85%)
Frame = -3 / -1
Query: 488 IGSLSSAPAMIAPDESNEYSKHIYWVR 408
IGS S AP MI PDESNEYSKHIYWVR
Sbjct: 440 IGSFSGAPTMIVPDESNEYSKHIYWVR 360
Score = 56.5 bits (117), Expect(3) = 4e-079
Identities = 23/29 (79%), Positives = 26/29 (89%)
Frame = -2 / -3
Query: 495 ANYRFLEQCSRNDCA**IK*ILQTHLLGE 409
+ YRFL++CS NDC **IK*ILQTHLLGE
Sbjct: 447 SRYRFLQRCSHNDCT**IK*ILQTHLLGE 361
Score = 55.6 bits (115), Expect(3) = 6e-078
Identities = 24/27 (88%), Positives = 24/27 (88%)
Frame = +1 / +1
Query: 409 LTQ*MCLEYSFDSSGAIIAGALLKEPI 489
LTQ*MCLEYSFDSSG II GA LKEPI
Sbjct: 361 LTQ*MCLEYSFDSSGTIIVGAPLKEPI 441
Score = 52.8 bits (109), Expect(3) = 3e-075
Identities = 21/26 (80%), Positives = 22/26 (84%)
Frame = +2 / +2
Query: 410 SPNRCVWSIHLIHQAQSLREHCSRNL 487
SP+RCVWSIHLIHQ QSL EH RNL
Sbjct: 362 SPSRCVWSIHLIHQVQSLWEHR*RNL 439
Score = 39.1 bits (79), Expect(3) = 4e-079
Identities = 17/33 (51%), Positives = 20/33 (60%)
Frame = -3 / -2
Query: 590 DHGSNCKRSNEGCCDKNAE*ECLCYSARLRRQP 492
D SN K + + + E*ECLCYS RL RQP
Sbjct: 541 DERSNAKGAMKAAVTRMFE*ECLCYSTRL*RQP 443
Score = 36.3 bits (73), Expect(5) = 3e-087
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1 / +3
Query: 466 GALLKEPIVGWRRNLAL*QRHSHS 537
G+ + GWR NL L*QRHSHS
Sbjct: 417 GSTAEGTYTGWRHNLVL*QRHSHS 488
Score = 34.5 bits (69), Expect(3) = 6e-078
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +2 / +1
Query: 494 AGVVT*RCSKGILIQXXXXXXXXXXXXNWN 583
AGV+T* CSKGILIQ WN
Sbjct: 445 AGVIT*YCSKGILIQTFLSQQPSLLLLRWN 534
Score = 34.1 bits (68), Expect(3) = 3e-075
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3 / +2
Query: 495 LAS*PSAVAKAFSFSILVTAAFIASLAIGTVV 590
LAS*PS VAKAFSF ++ S +GT +
Sbjct: 446 LAS*PSTVAKAFSFKHSCHSSLHCSFCVGTFI 541
Score = 33.1 bits (66), Expect(5) = 3e-089
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = -3 / -1
Query: 572 KRSNEGCCDKN 540
KRSNEGCCDKN
Sbjct: 524 KRSNEGCCDKN 492
Score = 27.6 bits (54), Expect(5) = 3e-089
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = -2 / -1
Query: 537 *MRMPLLQR*VTTPA 493
*MRMPLLQ *V TPA
Sbjct: 488 *MRMPLLQY*VMTPA 444
Score = 25.4 bits (49), Expect(5) = 3e-089
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3 / -1
Query: 665 FPSNLLYNKTPLMFCYDTG 609
FPS + + FCYDTG
Sbjct: 596 FPSTPYFLYNKIPFCYDTG 540
Score = 24.4 bits (47), Expect(5) = 3e-087
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +2 / +2
Query: 623 RTLKEFCCIE 652
R+ KEFCCIE
Sbjct: 548 RSKKEFCCIE 577
Score = 23.5 bits (45), Expect(5) = 3e-087
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3 / +3
Query: 537 SILVTAAFIASLAI 578
+ILVTAAFIA A+
Sbjct: 489 NILVTAAFIAPFAL 530
>gb|BF656938.1|BF656938 OV2_22_H05.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 547
Score = 199 bits (430), Expect(5) = 1e-072
Identities = 78/85 (91%), Positives = 81/85 (95%)
Frame = +2 / +3
Query: 152 SWMLAMNVNHENTHALCEPDCTESSIAVWDIPKCSGLCHPEVKMLELHERKECTGGPTVA 331
SWMLAMNVNHENTHALCE DCTESS+AVWDIPKCSGLCHPEVKMLELH+RKECTGGPTVA
Sbjct: 3 SWMLAMNVNHENTHALCEADCTESSVAVWDIPKCSGLCHPEVKMLELHQRKECTGGPTVA 182
Query: 332 AEVSESED**FLGWGTNYGSDS*PV 406
AEVSESED* FLGW TNYGS S*P+
Sbjct: 183 AEVSESED*CFLGWSTNYGSHS*PL 257
Score = 187 bits (402), Expect(5) = 8e-068
Identities = 75/89 (84%), Positives = 82/89 (92%)
Frame = -1 / -3
Query: 418 IG*GHRSTIRSVVCSPTKKSSILRLGHLSCHSWTTCAFFSFMEL*HFYLWVA*T*AFWDV 239
+G G RST+RSVVC+PTKK+SILRLGHLSC+SWTTCA FS M+L*HFYLWVA* *AFW+V
Sbjct: 269 LGEGQRSTMRSVVCAPTKKTSILRLGHLSCNSWTTCALFSLMKL*HFYLWVA*P*AFWNV 90
Query: 238 PNSN*RLRAVRFTKCMCVLMVDVHSKHPR 152
PNSN*RLRAV FTKCMCVLMVDVH KHPR
Sbjct: 89 PNSN*RLRAVSFTKCMCVLMVDVHGKHPR 3
Score = 172 bits (371), Expect(3) = 2e-057
Identities = 77/89 (86%), Positives = 79/89 (88%)
Frame = +3 / +1
Query: 150 DRGCLL*TSTMRTHMHFVNLTARSLQLLFGTSQNAQVYATQR*KC*SSMKEKNAQVVQLW 329
D GCL *TSTMRTHMHFV LTARSLQLLFGT QNAQ YATQR*KC*S +KEK+AQVVQL
Sbjct: 1 DLGCLP*TSTMRTHMHFVKLTARSLQLLFGTFQNAQGYATQR*KC*SFIKEKSAQVVQLL 180
Query: 330 QLRCPSLRIDDFLVGEQTTDLIVDLCPHP 416
QLRCPSLRID FLVG QTTDLIVDLCP P
Sbjct: 181 QLRCPSLRIDVFLVGAQTTDLIVDLCPSP 267
Score = 167 bits (359), Expect(3) = 6e-055
Identities = 70/84 (83%), Positives = 77/84 (91%)
Frame = +1 / +2
Query: 151 IVDACYERQP*EHTCTL*T*LHGVFNCCLGHPKMLRSMPPRGKNARAP*KKRMHRWSNCG 330
I+DAC+ERQP*EHTCTL*+*LHGVF+CCLGH KMLR+MPPRGKNARA KKR+HRWSNC
Sbjct: 2 ILDACHERQP*EHTCTL*S*LHGVFSCCLGHSKMLRAMPPRGKNARASSKKRVHRWSNCC 181
Query: 331 S*GVRV*GLMISWLGNKLRI**LT 402
S*GVRV*GLM SWL +KLRI *LT
Sbjct: 182 S*GVRV*GLMFSWLEHKLRIS*LT 253
Score = 166 bits (358), Expect(3) = 2e-057
Identities = 71/85 (83%), Positives = 74/85 (87%)
Frame = -3 / -2
Query: 404 QVNYQIRSLFPNQEIINPQTRTPQLPQLDHLCILFFHGALAFLPLGGIDLSILGCPKQQL 225
+VNY+IRSL NQE INPQTRTPQL QLDHLC LFF ALAFLPLGGI LSIL CPKQQL
Sbjct: 255 EVNYEIRSLCSNQENINPQTRTPQLQQLDHLCTLFFDEALAFLPLGGIALSILECPKQQL 76
Query: 224 KTPCSQVHKVHVCSHG*RS*QASTI 150
KTPCSQ+HKVHVCSHG*RS QAS I
Sbjct: 75 KTPCSQLHKVHVCSHG*RSWQASKI 1
Score = 150 bits (323), Expect(2) = 5e-049
Identities = 65/84 (77%), Positives = 66/84 (78%)
Frame = -2 / -1
Query: 402 GQLSDP*FVPQPRNHQSSDSDTSAATVGPPVHXXXXXXXXXXXSGWHRPEHFGMSQTAIE 223
GQL DP*FV QPR HQSSDSDTSAATVGPPVH SGWH PEHFGMSQTA E
Sbjct: 253 GQL*DP*FVLQPRKHQSSDSDTSAATVGPPVHSFL**SSSIFTSGWHSPEHFGMSQTATE 74
Query: 222 DSVQSGSQSACVFSWLTFIASIHD 151
DSVQS SQSACVFSWLTF+ASI D
Sbjct: 73 DSVQSASQSACVFSWLTFMASIQD 2
Score = 66.1 bits (138), Expect(5) = 1e-072
Identities = 24/28 (85%), Positives = 27/28 (96%)
Frame = +3 / +2
Query: 408 PHPIDVFGVFI*FIRRNHCGSTAQGTYS 491
PHP+DVFGVFI*FIR NHCGSTA+GTY+
Sbjct: 260 PHPVDVFGVFI*FIRYNHCGSTAEGTYT 343
Score = 65.2 bits (136), Expect(2) = 5e-049
Identities = 34/56 (60%), Positives = 37/56 (66%)
Frame = -1 / -2
Query: 574 AREAMKAAVTRMLNENAFATALGYDASQL*VP*AVLPQ*LRLMNQMNTPNTSIG*G 407
A+ AMKAAVTRM + +*VP AVLPQ*L LMNQMNTPNTS G*G
Sbjct: 426 AKGAMKAAVTRMFE*ECLCYSTRL*RQPV*VPSAVLPQ*LYLMNQMNTPNTSTG*G 259
Score = 60.6 bits (126), Expect(5) = 8e-068
Identities = 23/27 (85%), Positives = 23/27 (85%)
Frame = -3 / -1
Query: 488 IGSLSSAPAMIAPDESNEYSKHIYWVR 408
IGS S AP MI PDESNEYSKHIYWVR
Sbjct: 340 IGSFSGAPTMIVPDESNEYSKHIYWVR 260
Score = 56.5 bits (117), Expect(3) = 2e-057
Identities = 23/29 (79%), Positives = 26/29 (89%)
Frame = -2 / -3
Query: 495 ANYRFLEQCSRNDCA**IK*ILQTHLLGE 409
+ YRFL++CS NDC **IK*ILQTHLLGE
Sbjct: 347 SRYRFLQRCSHNDCT**IK*ILQTHLLGE 261
Score = 55.6 bits (115), Expect(3) = 2e-057
Identities = 24/27 (88%), Positives = 24/27 (88%)
Frame = +1 / +3
Query: 409 LTQ*MCLEYSFDSSGAIIAGALLKEPI 489
LTQ*MCLEYSFDSSG II GA LKEPI
Sbjct: 261 LTQ*MCLEYSFDSSGTIIVGAPLKEPI 341
Score = 52.8 bits (109), Expect(3) = 6e-055
Identities = 21/26 (80%), Positives = 22/26 (84%)
Frame = +2 / +1
Query: 410 SPNRCVWSIHLIHQAQSLREHCSRNL 487
SP+RCVWSIHLIHQ QSL EH RNL
Sbjct: 262 SPSRCVWSIHLIHQVQSLWEHR*RNL 339
Score = 39.1 bits (79), Expect(3) = 2e-057
Identities = 17/33 (51%), Positives = 20/33 (60%)
Frame = -3 / -2
Query: 590 DHGSNCKRSNEGCCDKNAE*ECLCYSARLRRQP 492
D SN K + + + E*ECLCYS RL RQP
Sbjct: 441 DERSNAKGAMKAAVTRMFE*ECLCYSTRL*RQP 343
Score = 36.3 bits (73), Expect(5) = 1e-072
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1 / +2
Query: 466 GALLKEPIVGWRRNLAL*QRHSHS 537
G+ + GWR NL L*QRHSHS
Sbjct: 317 GSTAEGTYTGWRHNLVL*QRHSHS 388
Score = 34.5 bits (69), Expect(3) = 2e-057
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +2 / +3
Query: 494 AGVVT*RCSKGILIQXXXXXXXXXXXXNWN 583
AGV+T* CSKGILIQ WN
Sbjct: 345 AGVIT*YCSKGILIQTFLSQQPSLLLLRWN 434
Score = 34.1 bits (68), Expect(3) = 6e-055
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3 / +1
Query: 495 LAS*PSAVAKAFSFSILVTAAFIASLAIGTVV 590
LAS*PS VAKAFSF ++ S +GT +
Sbjct: 346 LAS*PSTVAKAFSFKHSCHSSLHCSFCVGTFI 441
Score = 33.1 bits (66), Expect(5) = 8e-068
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = -3 / -1
Query: 572 KRSNEGCCDKN 540
KRSNEGCCDKN
Sbjct: 424 KRSNEGCCDKN 392
Score = 27.6 bits (54), Expect(5) = 8e-068
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = -2 / -1
Query: 537 *MRMPLLQR*VTTPA 493
*MRMPLLQ *V TPA
Sbjct: 388 *MRMPLLQY*VMTPA 344
Score = 25.4 bits (49), Expect(5) = 8e-068
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3 / -1
Query: 665 FPSNLLYNKTPLMFCYDTG 609
FPS + + FCYDTG
Sbjct: 496 FPSTPYFLYNKIPFCYDTG 440
Score = 24.4 bits (47), Expect(5) = 1e-072
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +2 / +1
Query: 623 RTLKEFCCIE 652
R+ KEFCCIE
Sbjct: 448 RSKKEFCCIE 477
Score = 23.5 bits (45), Expect(5) = 1e-072
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3 / +2
Query: 537 SILVTAAFIASLAI 578
+ILVTAAFIA A+
Sbjct: 389 NILVTAAFIAPFAL 430
>gb|CW132946.1|CW132946 104_516_11116489_148_34802_007 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11116489, DNA
sequence
Length = 736
Score = 112 bits (239), Expect(5) = 5e-047
Identities = 45/51 (88%), Positives = 48/51 (94%)
Frame = +2 / +3
Query: 254 SGLCHPEVKMLELHERKECTGGPTVAAEVSESED**FLGWGTNYGSDS*PV 406
+GLCHPEVKMLELH+RKECTGGPTVAAEVSESED* FLGW TNYGS S*P+
Sbjct: 285 TGLCHPEVKMLELHQRKECTGGPTVAAEVSESED*CFLGWSTNYGSHS*PL 437
Score = 109 bits (232), Expect(4) = 7e-042
Identities = 43/53 (81%), Positives = 49/53 (92%)
Frame = -1 / -3
Query: 418 IG*GHRSTIRSVVCSPTKKSSILRLGHLSCHSWTTCAFFSFMEL*HFYLWVA* 260
+G G RST+RSVVC+PTKK+SILRLGHLSC+SWTTCA FS M+L*HFYLWVA*
Sbjct: 449 LGEGQRSTMRSVVCAPTKKTSILRLGHLSCNSWTTCALFSLMKL*HFYLWVA* 291
Score = 104 bits (221), Expect(3) = 4e-037
Identities = 46/54 (85%), Positives = 48/54 (88%)
Frame = +3 / +1
Query: 255 QVYATQR*KC*SSMKEKNAQVVQLWQLRCPSLRIDDFLVGEQTTDLIVDLCPHP 416
Q YATQR*KC*S +KEK+AQVVQL QLRCPSLRID FLVG QTTDLIVDLCP P
Sbjct: 286 QGYATQR*KC*SFIKEKSAQVVQLLQLRCPSLRIDVFLVGAQTTDLIVDLCPSP 447
Score = 94.1 bits (199), Expect(3) = 8e-036
Identities = 40/50 (80%), Positives = 42/50 (84%)
Frame = -3 / -2
Query: 404 QVNYQIRSLFPNQEIINPQTRTPQLPQLDHLCILFFHGALAFLPLGGIDL 255
+VNY+IRSL NQE INPQTRTPQL QLDHLC LFF ALAFLPLGGI L
Sbjct: 435 EVNYEIRSLCSNQENINPQTRTPQLQQLDHLCTLFFDEALAFLPLGGIAL 286
Score = 91.3 bits (193), Expect(3) = 2e-032
Identities = 40/49 (81%), Positives = 43/49 (87%)
Frame = +1 / +2
Query: 256 RSMPPRGKNARAP*KKRMHRWSNCGS*GVRV*GLMISWLGNKLRI**LT 402
R+MPPRGKNARA KKR+HRWSNC S*GVRV*GLM SWL +KLRI *LT
Sbjct: 287 RAMPPRGKNARASSKKRVHRWSNCCS*GVRV*GLMFSWLEHKLRIS*LT 433
Score = 77.6 bits (163), Expect(2) = 3e-027
Identities = 34/49 (69%), Positives = 34/49 (69%)
Frame = -2 / -1
Query: 402 GQLSDP*FVPQPRNHQSSDSDTSAATVGPPVHXXXXXXXXXXXSGWHRP 256
GQL DP*FV QPR HQSSDSDTSAATVGPPVH SGWH P
Sbjct: 433 GQL*DP*FVLQPRKHQSSDSDTSAATVGPPVHSFL**SSSIFTSGWHSP 287
Score = 66.1 bits (138), Expect(5) = 5e-047
Identities = 24/28 (85%), Positives = 27/28 (96%)
Frame = +3 / +2
Query: 408 PHPIDVFGVFI*FIRRNHCGSTAQGTYS 491
PHP+DVFGVFI*FIR NHCGSTA+GTY+
Sbjct: 440 PHPVDVFGVFI*FIRYNHCGSTAEGTYT 523
Score = 65.2 bits (136), Expect(2) = 3e-027
Identities = 34/56 (60%), Positives = 37/56 (66%)
Frame = -1 / -2
Query: 574 AREAMKAAVTRMLNENAFATALGYDASQL*VP*AVLPQ*LRLMNQMNTPNTSIG*G 407
A+ AMKAAVTRM + +*VP AVLPQ*L LMNQMNTPNTS G*G
Sbjct: 606 AKGAMKAAVTRMFE*ECLCYSTRL*RQPV*VPSAVLPQ*LYLMNQMNTPNTSTG*G 439
Score = 60.6 bits (126), Expect(4) = 7e-042
Identities = 23/27 (85%), Positives = 23/27 (85%)
Frame = -3 / -1
Query: 488 IGSLSSAPAMIAPDESNEYSKHIYWVR 408
IGS S AP MI PDESNEYSKHIYWVR
Sbjct: 520 IGSFSGAPTMIVPDESNEYSKHIYWVR 440
Score = 56.5 bits (117), Expect(3) = 8e-036
Identities = 23/29 (79%), Positives = 26/29 (89%)
Frame = -2 / -3
Query: 495 ANYRFLEQCSRNDCA**IK*ILQTHLLGE 409
+ YRFL++CS NDC **IK*ILQTHLLGE
Sbjct: 527 SRYRFLQRCSHNDCT**IK*ILQTHLLGE 441
Score = 55.6 bits (115), Expect(3) = 4e-037
Identities = 24/27 (88%), Positives = 24/27 (88%)
Frame = +1 / +3
Query: 409 LTQ*MCLEYSFDSSGAIIAGALLKEPI 489
LTQ*MCLEYSFDSSG II GA LKEPI
Sbjct: 441 LTQ*MCLEYSFDSSGTIIVGAPLKEPI 521
Score = 52.8 bits (109), Expect(3) = 2e-032
Identities = 21/26 (80%), Positives = 22/26 (84%)
Frame = +2 / +1
Query: 410 SPNRCVWSIHLIHQAQSLREHCSRNL 487
SP+RCVWSIHLIHQ QSL EH RNL
Sbjct: 442 SPSRCVWSIHLIHQVQSLWEHR*RNL 519
Score = 39.1 bits (79), Expect(3) = 8e-036
Identities = 17/33 (51%), Positives = 20/33 (60%)
Frame = -3 / -2
Query: 590 DHGSNCKRSNEGCCDKNAE*ECLCYSARLRRQP 492
D SN K + + + E*ECLCYS RL RQP
Sbjct: 621 DERSNAKGAMKAAVTRMFE*ECLCYSTRL*RQP 523
Score = 36.3 bits (73), Expect(5) = 5e-047
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1 / +2
Query: 466 GALLKEPIVGWRRNLAL*QRHSHS 537
G+ + GWR NL L*QRHSHS
Sbjct: 497 GSTAEGTYTGWRHNLVL*QRHSHS 568
Score = 34.5 bits (69), Expect(3) = 4e-037
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +2 / +3
Query: 494 AGVVT*RCSKGILIQXXXXXXXXXXXXNWN 583
AGV+T* CSKGILIQ WN
Sbjct: 525 AGVIT*YCSKGILIQTFLSQQPSLLLLRWN 614
Score = 34.1 bits (68), Expect(3) = 2e-032
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3 / +1
Query: 495 LAS*PSAVAKAFSFSILVTAAFIASLAIGTVV 590
LAS*PS VAKAFSF ++ S +GT +
Sbjct: 526 LAS*PSTVAKAFSFKHSCHSSLHCSFCVGTFI 621
Score = 33.1 bits (66), Expect(4) = 7e-042
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = -3 / -1
Query: 572 KRSNEGCCDKN 540
KRSNEGCCDKN
Sbjct: 604 KRSNEGCCDKN 572
Score = 27.6 bits (54), Expect(4) = 7e-042
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = -2 / -1
Query: 537 *MRMPLLQR*VTTPA 493
*MRMPLLQ *V TPA
Sbjct: 568 *MRMPLLQY*VMTPA 524
Score = 24.4 bits (47), Expect(5) = 5e-047
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +2 / +1
Query: 623 RTLKEFCCIE 652
R+ KEFCCIE
Sbjct: 628 RSKKEFCCIE 657
Score = 23.5 bits (45), Expect(5) = 5e-047
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3 / +2
Query: 537 SILVTAAFIASLAI 578
+ILVTAAFIA A+
Sbjct: 569 NILVTAAFIAPFAL 610
>gb|CW333022.1|CW333022 104_830_11481721_148_36039_001 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481721, DNA
sequence
Length = 726
Score = 112 bits (239), Expect(5) = 5e-047
Identities = 45/51 (88%), Positives = 48/51 (94%)
Frame = +2 / +3
Query: 254 SGLCHPEVKMLELHERKECTGGPTVAAEVSESED**FLGWGTNYGSDS*PV 406
+GLCHPEVKMLELH+RKECTGGPTVAAEVSESED* FLGW TNYGS S*P+
Sbjct: 93 TGLCHPEVKMLELHQRKECTGGPTVAAEVSESED*CFLGWSTNYGSHS*PL 245
Score = 109 bits (232), Expect(5) = 2e-044
Identities = 43/53 (81%), Positives = 49/53 (92%)
Frame = -1 / -2
Query: 418 IG*GHRSTIRSVVCSPTKKSSILRLGHLSCHSWTTCAFFSFMEL*HFYLWVA* 260
+G G RST+RSVVC+PTKK+SILRLGHLSC+SWTTCA FS M+L*HFYLWVA*
Sbjct: 257 LGEGQRSTMRSVVCAPTKKTSILRLGHLSCNSWTTCALFSLMKL*HFYLWVA* 99
Score = 104 bits (221), Expect(3) = 4e-037
Identities = 46/54 (85%), Positives = 48/54 (88%)
Frame = +3 / +1
Query: 255 QVYATQR*KC*SSMKEKNAQVVQLWQLRCPSLRIDDFLVGEQTTDLIVDLCPHP 416
Q YATQR*KC*S +KEK+AQVVQL QLRCPSLRID FLVG QTTDLIVDLCP P
Sbjct: 94 QGYATQR*KC*SFIKEKSAQVVQLLQLRCPSLRIDVFLVGAQTTDLIVDLCPSP 255
Score = 94.1 bits (199), Expect(3) = 8e-036
Identities = 40/50 (80%), Positives = 42/50 (84%)
Frame = -3 / -1
Query: 404 QVNYQIRSLFPNQEIINPQTRTPQLPQLDHLCILFFHGALAFLPLGGIDL 255
+VNY+IRSL NQE INPQTRTPQL QLDHLC LFF ALAFLPLGGI L
Sbjct: 243 EVNYEIRSLCSNQENINPQTRTPQLQQLDHLCTLFFDEALAFLPLGGIAL 94
Score = 91.3 bits (193), Expect(3) = 2e-032
Identities = 40/49 (81%), Positives = 43/49 (87%)
Frame = +1 / +2
Query: 256 RSMPPRGKNARAP*KKRMHRWSNCGS*GVRV*GLMISWLGNKLRI**LT 402
R+MPPRGKNARA KKR+HRWSNC S*GVRV*GLM SWL +KLRI *LT
Sbjct: 95 RAMPPRGKNARASSKKRVHRWSNCCS*GVRV*GLMFSWLEHKLRIS*LT 241
Score = 77.6 bits (163), Expect(2) = 3e-027
Identities = 34/49 (69%), Positives = 34/49 (69%)
Frame = -2 / -3
Query: 402 GQLSDP*FVPQPRNHQSSDSDTSAATVGPPVHXXXXXXXXXXXSGWHRP 256
GQL DP*FV QPR HQSSDSDTSAATVGPPVH SGWH P
Sbjct: 241 GQL*DP*FVLQPRKHQSSDSDTSAATVGPPVHSFL**SSSIFTSGWHSP 95
Score = 66.1 bits (138), Expect(5) = 5e-047
Identities = 24/28 (85%), Positives = 27/28 (96%)
Frame = +3 / +2
Query: 408 PHPIDVFGVFI*FIRRNHCGSTAQGTYS 491
PHP+DVFGVFI*FIR NHCGSTA+GTY+
Sbjct: 248 PHPVDVFGVFI*FIRYNHCGSTAEGTYT 331
Score = 65.2 bits (136), Expect(2) = 3e-027
Identities = 34/56 (60%), Positives = 37/56 (66%)
Frame = -1 / -1
Query: 574 AREAMKAAVTRMLNENAFATALGYDASQL*VP*AVLPQ*LRLMNQMNTPNTSIG*G 407
A+ AMKAAVTRM + +*VP AVLPQ*L LMNQMNTPNTS G*G
Sbjct: 414 AKGAMKAAVTRMFE*ECLCYSTRL*RQPV*VPSAVLPQ*LYLMNQMNTPNTSTG*G 247
Score = 60.6 bits (126), Expect(5) = 2e-044
Identities = 23/27 (85%), Positives = 23/27 (85%)
Frame = -3 / -3
Query: 488 IGSLSSAPAMIAPDESNEYSKHIYWVR 408
IGS S AP MI PDESNEYSKHIYWVR
Sbjct: 328 IGSFSGAPTMIVPDESNEYSKHIYWVR 248
Score = 56.5 bits (117), Expect(3) = 8e-036
Identities = 23/29 (79%), Positives = 26/29 (89%)
Frame = -2 / -2
Query: 495 ANYRFLEQCSRNDCA**IK*ILQTHLLGE 409
+ YRFL++CS NDC **IK*ILQTHLLGE
Sbjct: 335 SRYRFLQRCSHNDCT**IK*ILQTHLLGE 249
Score = 55.6 bits (115), Expect(3) = 4e-037
Identities = 24/27 (88%), Positives = 24/27 (88%)
Frame = +1 / +3
Query: 409 LTQ*MCLEYSFDSSGAIIAGALLKEPI 489
LTQ*MCLEYSFDSSG II GA LKEPI
Sbjct: 249 LTQ*MCLEYSFDSSGTIIVGAPLKEPI 329
Score = 52.8 bits (109), Expect(3) = 2e-032
Identities = 21/26 (80%), Positives = 22/26 (84%)
Frame = +2 / +1
Query: 410 SPNRCVWSIHLIHQAQSLREHCSRNL 487
SP+RCVWSIHLIHQ QSL EH RNL
Sbjct: 250 SPSRCVWSIHLIHQVQSLWEHR*RNL 327
Score = 39.1 bits (79), Expect(3) = 8e-036
Identities = 17/33 (51%), Positives = 20/33 (60%)
Frame = -3 / -1
Query: 590 DHGSNCKRSNEGCCDKNAE*ECLCYSARLRRQP 492
D SN K + + + E*ECLCYS RL RQP
Sbjct: 429 DERSNAKGAMKAAVTRMFE*ECLCYSTRL*RQP 331
Score = 36.3 bits (73), Expect(5) = 5e-047
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1 / +2
Query: 466 GALLKEPIVGWRRNLAL*QRHSHS 537
G+ + GWR NL L*QRHSHS
Sbjct: 305 GSTAEGTYTGWRHNLVL*QRHSHS 376
Score = 34.5 bits (69), Expect(3) = 4e-037
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +2 / +3
Query: 494 AGVVT*RCSKGILIQXXXXXXXXXXXXNWN 583
AGV+T* CSKGILIQ WN
Sbjct: 333 AGVIT*YCSKGILIQTFLSQQPSLLLLRWN 422
Score = 34.1 bits (68), Expect(3) = 2e-032
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3 / +1
Query: 495 LAS*PSAVAKAFSFSILVTAAFIASLAIGTVV 590
LAS*PS VAKAFSF ++ S +GT +
Sbjct: 334 LAS*PSTVAKAFSFKHSCHSSLHCSFCVGTFI 429
Score = 33.1 bits (66), Expect(5) = 2e-044
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = -3 / -3
Query: 572 KRSNEGCCDKN 540
KRSNEGCCDKN
Sbjct: 412 KRSNEGCCDKN 380
Score = 27.6 bits (54), Expect(5) = 2e-044
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = -2 / -3
Query: 537 *MRMPLLQR*VTTPA 493
*MRMPLLQ *V TPA
Sbjct: 376 *MRMPLLQY*VMTPA 332
Score = 25.4 bits (49), Expect(5) = 2e-044
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3 / -3
Query: 665 FPSNLLYNKTPLMFCYDTG 609
FPS + + FCYDTG
Sbjct: 484 FPSTPYFLYNKIPFCYDTG 428
Score = 24.4 bits (47), Expect(5) = 5e-047
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +2 / +1
Query: 623 RTLKEFCCIE 652
R+ KEFCCIE
Sbjct: 436 RSKKEFCCIE 465
Score = 23.5 bits (45), Expect(5) = 5e-047
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3 / +2
Query: 537 SILVTAAFIASLAI 578
+ILVTAAFIA A+
Sbjct: 377 NILVTAAFIAPFAL 418
>gb|AW286139.2|AW286139 LG1_261_H08.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 452
Score = 181 bits (389), Expect = 1e-044
Identities = 77/86 (89%), Positives = 80/86 (93%)
Frame = -2 / -1
Query: 258 PEHFGMSQTAIEDSVQSGSQSACVFSWLTFIASIHDPIVTSSLLNIRKLLFRNATKLATT 79
PEHFGMSQTA EDSVQS SQSACVFSWLTF+ASI DPIVTSSLLNIRKLLF ATKLATT
Sbjct: 449 PEHFGMSQTATEDSVQSASQSACVFSWLTFMASIQDPIVTSSLLNIRKLLFLKATKLATT 270
Query: 78 SADKA*IGPYA*RKYCDPSKKDWGSW 1
SAD+A*IGPYA*RKY DPSKKDWGS+
Sbjct: 269 SADRA*IGPYA*RKYSDPSKKDWGSY 192
Score = 180 bits (388), Expect = 2e-044
Identities = 74/85 (87%), Positives = 78/85 (91%)
Frame = -3 / -2
Query: 257 LSILGCPKQQLKTPCSQVHKVHVCSHG*RS*QASTIQL*RPRC*TYGNCCFAMQPS*PPR 78
LSIL CPKQQLKTPCSQ+HKVHVCSHG*RS QAS IQL* PRC*TYGNCCF+ QPS*PPR
Sbjct: 448 LSILECPKQQLKTPCSQLHKVHVCSHG*RSWQASKIQL*HPRC*TYGNCCFSKQPS*PPR 269
Query: 77 QLIKHKLAHMHEGSIVIRVKRIGAH 3
QLI+HKLAH HEGSI IRV+RIGAH
Sbjct: 268 QLIEHKLAHTHEGSIPIRVRRIGAH 194
Score = 178 bits (384), Expect = 6e-044
Identities = 72/86 (83%), Positives = 78/86 (90%)
Frame = +1 / +3
Query: 4 *APILFTRITILPSCIWANLCFIS*RGG*LGCIAKQQFPYVQQRGRYNWIVDACYERQP* 183
*APIL TRI ILPSC+WANLC IS*RGG*LGC KQQFPYV QRG YNWI+DAC+ERQP*
Sbjct: 195 *APILLTRIGILPSCVWANLCSIS*RGG*LGCFEKQQFPYV*QRGCYNWILDACHERQP* 374
Query: 184 EHTCTL*T*LHGVFNCCLGHPKMLRS 261
EHTCTL*+*LHGVF+CCLGH KMLR+
Sbjct: 375 EHTCTL*S*LHGVFSCCLGHSKMLRA 452
Score = 178 bits (383), Expect = 8e-044
Identities = 69/86 (80%), Positives = 72/86 (83%)
Frame = +2 / +1
Query: 2 HEPQSFLLGSQYFLHAYGPIYXXXXXXXXXXXXXRNNSFRMFSNEDVTIGSWMLAMNVNH 181
+EPQSFLLGS+YFLHAYGPIY RNNSFRMFSNEDVTIGSWMLAMNVNH
Sbjct: 193 YEPQSFLLGSEYFLHAYGPIYALSADVVASLVALRNNSFRMFSNEDVTIGSWMLAMNVNH 372
Query: 182 ENTHALCEPDCTESSIAVWDIPKCSG 259
ENTHALCE DCTESS+AVWDIPKCSG
Sbjct: 373 ENTHALCEADCTESSVAVWDIPKCSG 450
Score = 175 bits (376), Expect = 7e-043
Identities = 74/85 (87%), Positives = 79/85 (92%)
Frame = -1 / -3
Query: 256 *AFWDVPNSN*RLRAVRFTKCMCVLMVDVHSKHPRSNCNVLVAEHTETVVSQCNQASHHV 77
*AFW+VPNSN*RLRAV FTKCMCVLMVDVH KHPRSNCN+LVA+HTETVVSQ NQASHHV
Sbjct: 447 *AFWNVPNSN*RLRAVSFTKCMCVLMVDVHGKHPRSNCNILVAKHTETVVSQSNQASHHV 268
Query: 76 S**SINWPICMKEVL*SE*KGLGLM 2
S**SINWPI MKEV SE*+GLGL+
Sbjct: 267 S**SINWPIRMKEVFRSE*EGLGLI 193
Score = 174 bits (375), Expect = 1e-042
Identities = 74/85 (87%), Positives = 74/85 (87%)
Frame = +3 / +2
Query: 3 MSPNPFYSDHNTSFMHMGQFMLYQLTWWLAWLHCETTVSVCSATRTLQLDRGCLL*TSTM 182
MSPNP YSD NTSFM MGQFMLYQLTWWLAWL ETTVSVC ATR LQLD GCL *TSTM
Sbjct: 194 MSPNPSYSDRNTSFMRMGQFMLYQLTWWLAWLL*ETTVSVCLATRMLQLDLGCLP*TSTM 373
Query: 183 RTHMHFVNLTARSLQLLFGTSQNAQ 257
RTHMHFV LTARSLQLLFGT QNAQ
Sbjct: 374 RTHMHFVKLTARSLQLLFGTFQNAQ 448
>gb|CW150519.1|CW150519 104_551_11143453_116_36307_063 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11143453, DNA
sequence
Length = 625
Score = 112 bits (239), Expect(3) = 9e-042
Identities = 45/51 (88%), Positives = 48/51 (94%)
Frame = +2 / -3
Query: 254 SGLCHPEVKMLELHERKECTGGPTVAAEVSESED**FLGWGTNYGSDS*PV 406
+GLCHPEVKMLELH+RKECTGGPTVAAEVSESED* FLGW TNYGS S*P+
Sbjct: 320 TGLCHPEVKMLELHQRKECTGGPTVAAEVSESED*CFLGWSTNYGSHS*PL 168
Score = 109 bits (232), Expect(4) = 2e-044
Identities = 43/53 (81%), Positives = 49/53 (92%)
Frame = -1 / +3
Query: 418 IG*GHRSTIRSVVCSPTKKSSILRLGHLSCHSWTTCAFFSFMEL*HFYLWVA* 260
+G G RST+RSVVC+PTKK+SILRLGHLSC+SWTTCA FS M+L*HFYLWVA*
Sbjct: 156 LGEGQRSTMRSVVCAPTKKTSILRLGHLSCNSWTTCALFSLMKL*HFYLWVA* 314
Score = 104 bits (221), Expect(3) = 6e-036
Identities = 46/54 (85%), Positives = 48/54 (88%)
Frame = +3 / -1
Query: 255 QVYATQR*KC*SSMKEKNAQVVQLWQLRCPSLRIDDFLVGEQTTDLIVDLCPHP 416
Q YATQR*KC*S +KEK+AQVVQL QLRCPSLRID FLVG QTTDLIVDLCP P
Sbjct: 319 QGYATQR*KC*SFIKEKSAQVVQLLQLRCPSLRIDVFLVGAQTTDLIVDLCPSP 158
Score = 94.1 bits (199), Expect(4) = 8e-034
Identities = 40/50 (80%), Positives = 42/50 (84%)
Frame = -3 / +2
Query: 404 QVNYQIRSLFPNQEIINPQTRTPQLPQLDHLCILFFHGALAFLPLGGIDL 255
+VNY+IRSL NQE INPQTRTPQL QLDHLC LFF ALAFLPLGGI L
Sbjct: 170 EVNYEIRSLCSNQENINPQTRTPQLQQLDHLCTLFFDEALAFLPLGGIAL 319
Score = 91.3 bits (193), Expect(3) = 2e-030
Identities = 40/49 (81%), Positives = 43/49 (87%)
Frame = +1 / -2
Query: 256 RSMPPRGKNARAP*KKRMHRWSNCGS*GVRV*GLMISWLGNKLRI**LT 402
R+MPPRGKNARA KKR+HRWSNC S*GVRV*GLM SWL +KLRI *LT
Sbjct: 318 RAMPPRGKNARASSKKRVHRWSNCCS*GVRV*GLMFSWLEHKLRIS*LT 172
Score = 77.6 bits (163), Expect(3) = 4e-026
Identities = 34/49 (69%), Positives = 34/49 (69%)
Frame = -2 / +1
Query: 402 GQLSDP*FVPQPRNHQSSDSDTSAATVGPPVHXXXXXXXXXXXSGWHRP 256
GQL DP*FV QPR HQSSDSDTSAATVGPPVH SGWH P
Sbjct: 172 GQL*DP*FVLQPRKHQSSDSDTSAATVGPPVHSFL**SSSIFTSGWHSP 318
Score = 66.1 bits (138), Expect(3) = 9e-042
Identities = 24/28 (85%), Positives = 27/28 (96%)
Frame = +3 / -2
Query: 408 PHPIDVFGVFI*FIRRNHCGSTAQGTYS 491
PHP+DVFGVFI*FIR NHCGSTA+GTY+
Sbjct: 165 PHPVDVFGVFI*FIRYNHCGSTAEGTYT 82
Score = 60.6 bits (126), Expect(4) = 2e-044
Identities = 23/27 (85%), Positives = 23/27 (85%)
Frame = -3 / +1
Query: 488 IGSLSSAPAMIAPDESNEYSKHIYWVR 408
IGS S AP MI PDESNEYSKHIYWVR
Sbjct: 85 IGSFSGAPTMIVPDESNEYSKHIYWVR 165
Score = 56.1 bits (116), Expect(4) = 8e-034
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = -2 / +3
Query: 489 YRFLEQCSRNDCA**IK*ILQTHLLGE 409
YRFL++CS NDC **IK*ILQTHLLGE
Sbjct: 84 YRFLQRCSHNDCT**IK*ILQTHLLGE 164
Score = 55.6 bits (115), Expect(3) = 6e-036
Identities = 24/27 (88%), Positives = 24/27 (88%)
Frame = +1 / -3
Query: 409 LTQ*MCLEYSFDSSGAIIAGALLKEPI 489
LTQ*MCLEYSFDSSG II GA LKEPI
Sbjct: 164 LTQ*MCLEYSFDSSGTIIVGAPLKEPI 84
Score = 52.8 bits (109), Expect(3) = 2e-030
Identities = 21/26 (80%), Positives = 22/26 (84%)
Frame = +2 / -1
Query: 410 SPNRCVWSIHLIHQAQSLREHCSRNL 487
SP+RCVWSIHLIHQ QSL EH RNL
Sbjct: 163 SPSRCVWSIHLIHQVQSLWEHR*RNL 86
Score = 51.5 bits (106), Expect(3) = 4e-026
Identities = 24/28 (85%), Positives = 25/28 (89%)
Frame = -1 / +2
Query: 490 L*VP*AVLPQ*LRLMNQMNTPNTSIG*G 407
+*VP AVLPQ*L LMNQMNTPNTS G*G
Sbjct: 83 V*VPSAVLPQ*LYLMNQMNTPNTSTG*G 166
Score = 33.6 bits (67), Expect(4) = 2e-044
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = -1 / +3
Query: 538 LNENAFATALGYDA 497
LNENAFAT LGYDA
Sbjct: 36 LNENAFATVLGYDA 77
Score = 33.1 bits (66), Expect(4) = 2e-044
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = -3 / +1
Query: 572 KRSNEGCCDKN 540
KRSNEGCCDKN
Sbjct: 1 KRSNEGCCDKN 33
Score = 31.3 bits (62), Expect(3) = 9e-042
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +2 / -3
Query: 494 AGVVT*RCSKGILIQ 538
AGV+T* CSKGILIQ
Sbjct: 80 AGVIT*YCSKGILIQ 36
Score = 30.4 bits (60), Expect(3) = 6e-036
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1 / -2
Query: 466 GALLKEPIVGWRRNLAL*QRHSHS 537
G+ + G R NL L*QRHSHS
Sbjct: 108 GSTAEGTYTGGRHNLVL*QRHSHS 37
Score = 30.4 bits (60), Expect(4) = 8e-034
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = -3 / +2
Query: 536 E*ECLCYSARLRRQP 492
E*ECLCYS RL R P
Sbjct: 38 E*ECLCYSTRL*RPP 82
Score = 27.6 bits (54), Expect(3) = 4e-026
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = -2 / +1
Query: 537 *MRMPLLQR*VTTPA 493
*MRMPLLQ *V TPA
Sbjct: 37 *MRMPLLQY*VMTPA 81
Score = 27.2 bits (53), Expect(3) = 2e-030
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +3 / -1
Query: 498 AS*PSAVAKAFSF 536
AS*PS VAKAFSF
Sbjct: 76 AS*PSTVAKAFSF 38
Score = 21.7 bits (41), Expect(4) = 8e-034
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1 / +2
Query: 565 AMKAAVTRM 539
AMKAAVTRM
Sbjct: 8 AMKAAVTRM 34
>gb|BZ336865.1|BZ336865 hz39f11.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hz39f11 5', DNA sequence
Length = 716
Score = 124 bits (266), Expect(2) = 3e-042
Identities = 47/51 (92%), Positives = 50/51 (98%)
Frame = +2 / -1
Query: 107 NNSFRMFSNEDVTIGSWMLAMNVNHENTHALCEPDCTESSIAVWDIPKCSG 259
++SFRMFSNEDVTIGSWMLAMNVNHENTHALCE DCTESS+AVWDIPKCSG
Sbjct: 620 SSSFRMFSNEDVTIGSWMLAMNVNHENTHALCEADCTESSVAVWDIPKCSG 468
Score = 115 bits (245), Expect(2) = 4e-037
Identities = 45/55 (81%), Positives = 49/55 (89%)
Frame = +1 / -3
Query: 97 CIAKQQFPYVQQRGRYNWIVDACYERQP*EHTCTL*T*LHGVFNCCLGHPKMLRS 261
CI QFPYV QRG YNWI+DAC+ERQP*EHTCTL*+*LHGVF+CCLGH KMLRS
Sbjct: 630 CICLFQFPYV*QRGCYNWILDACHERQP*EHTCTL*S*LHGVFSCCLGHSKMLRS 466
Score = 112 bits (240), Expect(2) = 3e-036
Identities = 44/49 (89%), Positives = 47/49 (95%)
Frame = -1 / +3
Query: 259 T*AFWDVPNSN*RLRAVRFTKCMCVLMVDVHSKHPRSNCNVLVAEHTET 113
T*AFW+VPNSN*RLRAV FTKCMCVLMVDVH KHPRSNCN+LVA+HTET
Sbjct: 468 T*AFWNVPNSN*RLRAVSFTKCMCVLMVDVHGKHPRSNCNILVAKHTET 614
Score = 106 bits (227), Expect(2) = 2e-033
Identities = 45/49 (91%), Positives = 46/49 (93%)
Frame = -2 / +1
Query: 258 PEHFGMSQTAIEDSVQSGSQSACVFSWLTFIASIHDPIVTSSLLNIRKL 112
PEHFGMSQTA EDSVQS SQSACVFSWLTF+ASI DPIVTSSLLNIRKL
Sbjct: 469 PEHFGMSQTATEDSVQSASQSACVFSWLTFMASIQDPIVTSSLLNIRKL 615
Score = 105 bits (225), Expect(2) = 2e-026
Identities = 44/49 (89%), Positives = 45/49 (91%)
Frame = -3 / +2
Query: 260 DLSILGCPKQQLKTPCSQVHKVHVCSHG*RS*QASTIQL*RPRC*TYGN 114
DLSIL CPKQQLKTPCSQ+HKVHVCSHG*RS QAS IQL* PRC*TYGN
Sbjct: 467 DLSILECPKQQLKTPCSQLHKVHVCSHG*RSWQASKIQL*HPRC*TYGN 613
Score = 100 bits (214), Expect(2) = 1e-030
Identities = 45/56 (80%), Positives = 46/56 (82%)
Frame = +3 / -2
Query: 93 WLHCETTVSVCSATRTLQLDRGCLL*TSTMRTHMHFVNLTARSLQLLFGTSQNAQV 260
+LH VSVC ATR LQLD GCL *TSTMRTHMHFV LTARSLQLLFGT QNAQV
Sbjct: 634 FLHMSLPVSVCLATRMLQLDLGCLP*TSTMRTHMHFVKLTARSLQLLFGTFQNAQV 467
Score = 70.3 bits (147), Expect(2) = 3e-042
Identities = 26/28 (92%), Positives = 28/28 (100%)
Frame = +2 / -3
Query: 254 SGLCHPEVKMLELHERKECTGGPTVAAE 337
+GLCHPEVKMLELH+RKECTGGPTVAAE
Sbjct: 93 TGLCHPEVKMLELHQRKECTGGPTVAAE 10
Score = 62.9 bits (131), Expect(2) = 4e-037
Identities = 24/28 (85%), Positives = 26/28 (92%)
Frame = +1 / -2
Query: 256 RSMPPRGKNARAP*KKRMHRWSNCGS*G 339
R+MPPRGKNARA KKR+HRWSNCGS*G
Sbjct: 91 RAMPPRGKNARASSKKRVHRWSNCGS*G 8
Score = 62.0 bits (129), Expect(2) = 3e-036
Identities = 23/26 (88%), Positives = 24/26 (92%)
Frame = -1 / +1
Query: 337 LSCHSWTTCAFFSFMEL*HFYLWVA* 260
LSCHSWTTCA FS M+L*HFYLWVA*
Sbjct: 10 LSCHSWTTCALFSLMKL*HFYLWVA* 87
Score = 58.8 bits (122), Expect(2) = 2e-033
Identities = 24/28 (85%), Positives = 24/28 (85%)
Frame = -3 / +3
Query: 338 PQLPQLDHLCILFFHGALAFLPLGGIDL 255
PQLPQLDHLC LFF ALAFLPLGGI L
Sbjct: 9 PQLPQLDHLCTLFFDEALAFLPLGGIAL 92
Score = 55.1 bits (114), Expect(2) = 1e-030
Identities = 24/28 (85%), Positives = 26/28 (92%)
Frame = +3 / -1
Query: 255 QVYATQR*KC*SSMKEKNAQVVQLWQLR 338
Q YATQR*KC*S +KEK+AQVVQLWQLR
Sbjct: 92 QGYATQR*KC*SFIKEKSAQVVQLWQLR 9
Score = 35.9 bits (72), Expect(2) = 2e-026
Identities = 15/27 (55%), Positives = 15/27 (55%)
Frame = -2 / +2
Query: 336 SAATVGPPVHXXXXXXXXXXXSGWHRP 256
SAATVGPPVH SGWH P
Sbjct: 11 SAATVGPPVHSFL**SSSIFTSGWHSP 91
>gb|CW228767.1|CW228767 104_668_11206561_148_37248_001 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11206561, DNA
sequence
Length = 291
Score = 77.1 bits (162), Expect(4) = 3e-034
Identities = 29/36 (80%), Positives = 34/36 (94%)
Frame = -1 / -1
Query: 418 IG*GHRSTIRSVVCSPTKKSSILRLGHLSCHSWTTC 311
+G G RST+RSVVC+PTKK+SILRLGHLSC+SWTTC
Sbjct: 108 LGEGQRSTMRSVVCAPTKKTSILRLGHLSCNSWTTC 1
Score = 73.5 bits (154), Expect(4) = 5e-034
Identities = 31/35 (88%), Positives = 31/35 (88%)
Frame = +3 / +2
Query: 312 QVVQLWQLRCPSLRIDDFLVGEQTTDLIVDLCPHP 416
QVVQL QLRCPSLRID FLVG QTTDLIVDLCP P
Sbjct: 2 QVVQLLQLRCPSLRIDVFLVGAQTTDLIVDLCPSP 106
Score = 66.1 bits (138), Expect(4) = 5e-034
Identities = 24/28 (85%), Positives = 27/28 (96%)
Frame = +3 / +3
Query: 408 PHPIDVFGVFI*FIRRNHCGSTAQGTYS 491
PHP+DVFGVFI*FIR NHCGSTA+GTY+
Sbjct: 99 PHPVDVFGVFI*FIRYNHCGSTAEGTYT 182
Score = 66.1 bits (138), Expect(3) = 4e-026
Identities = 28/32 (87%), Positives = 29/32 (90%)
Frame = +2 / +1
Query: 311 TGGPTVAAEVSESED**FLGWGTNYGSDS*PV 406
TGGPTVAAEVSESED* FLGW TNYGS S*P+
Sbjct: 1 TGGPTVAAEVSESED*CFLGWSTNYGSHS*PL 96
Score = 63.4 bits (132), Expect(3) = 1e-026
Identities = 27/30 (90%), Positives = 27/30 (90%)
Frame = -2 / -2
Query: 402 GQLSDP*FVPQPRNHQSSDSDTSAATVGPP 313
GQL DP*FV QPR HQSSDSDTSAATVGPP
Sbjct: 92 GQL*DP*FVLQPRKHQSSDSDTSAATVGPP 3
Score = 63.4 bits (132), Expect(2) = 6e-022
Identities = 33/53 (62%), Positives = 35/53 (66%)
Frame = -1 / -3
Query: 565 AMKAAVTRMLNENAFATALGYDASQL*VP*AVLPQ*LRLMNQMNTPNTSIG*G 407
AMKAAVTRM + +*VP AVLPQ*L LMNQMNTPNTS G*G
Sbjct: 256 AMKAAVTRMFE*ECLCYSTRL*RQPV*VPSAVLPQ*LYLMNQMNTPNTSTG*G 98
Score = 61.1 bits (127), Expect(2) = 6e-022
Identities = 25/31 (80%), Positives = 27/31 (87%)
Frame = -3 / -3
Query: 404 QVNYQIRSLFPNQEIINPQTRTPQLPQLDHL 312
+VNY+IRSL NQE INPQTRTPQL QLDHL
Sbjct: 94 EVNYEIRSLCSNQENINPQTRTPQLQQLDHL 2
Score = 60.6 bits (126), Expect(4) = 3e-034
Identities = 23/27 (85%), Positives = 23/27 (85%)
Frame = -3 / -2
Query: 488 IGSLSSAPAMIAPDESNEYSKHIYWVR 408
IGS S AP MI PDESNEYSKHIYWVR
Sbjct: 179 IGSFSGAPTMIVPDESNEYSKHIYWVR 99
Score = 56.5 bits (117), Expect(3) = 1e-026
Identities = 23/29 (79%), Positives = 26/29 (89%)
Frame = -2 / -1
Query: 495 ANYRFLEQCSRNDCA**IK*ILQTHLLGE 409
+ YRFL++CS NDC **IK*ILQTHLLGE
Sbjct: 186 SRYRFLQRCSHNDCT**IK*ILQTHLLGE 100
Score = 55.6 bits (115), Expect(3) = 4e-026
Identities = 24/27 (88%), Positives = 24/27 (88%)
Frame = +1 / +1
Query: 409 LTQ*MCLEYSFDSSGAIIAGALLKEPI 489
LTQ*MCLEYSFDSSG II GA LKEPI
Sbjct: 100 LTQ*MCLEYSFDSSGTIIVGAPLKEPI 180
Score = 55.1 bits (114), Expect(3) = 3e-021
Identities = 25/30 (83%), Positives = 26/30 (86%)
Frame = +1 / +3
Query: 313 RWSNCGS*GVRV*GLMISWLGNKLRI**LT 402
RWSNC S*GVRV*GLM SWL +KLRI *LT
Sbjct: 3 RWSNCCS*GVRV*GLMFSWLEHKLRIS*LT 92
Score = 52.8 bits (109), Expect(3) = 3e-021
Identities = 21/26 (80%), Positives = 22/26 (84%)
Frame = +2 / +2
Query: 410 SPNRCVWSIHLIHQAQSLREHCSRNL 487
SP+RCVWSIHLIHQ QSL EH RNL
Sbjct: 101 SPSRCVWSIHLIHQVQSLWEHR*RNL 178
Score = 37.3 bits (75), Expect(3) = 1e-026
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = -1 / -1
Query: 583 VPIAREAMKAAVTRMLNENAFATALGYDASQ 491
VP +E + LNENAFAT LGYDAS+
Sbjct: 273 VPRKKEQ*RLL*QECLNENAFATVLGYDASR 181
Score = 36.3 bits (73), Expect(4) = 5e-034
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1 / +3
Query: 466 GALLKEPIVGWRRNLAL*QRHSHS 537
G+ + GWR NL L*QRHSHS
Sbjct: 156 GSTAEGTYTGWRHNLVL*QRHSHS 227
Score = 33.6 bits (67), Expect(3) = 4e-026
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +2 / +1
Query: 494 AGVVT*RCSKGILIQXXXXXXXXXXXXNWN 583
AGV+T* CSKGILIQ WN
Sbjct: 184 AGVIT*YCSKGILIQTFLSQQPSLLLFAWN 273
Score = 33.6 bits (67), Expect(4) = 3e-034
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = -3 / -2
Query: 578 NCKRSNEGCCDKN 540
+ KRSNEGCCDKN
Sbjct: 269 HAKRSNEGCCDKN 231
Score = 30.9 bits (61), Expect(3) = 3e-021
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +3 / +2
Query: 495 LAS*PSAVAKAFSFSILVTAAFIASLAIGTVV 590
LAS*PS VAKAFSF ++ S GT +
Sbjct: 185 LAS*PSTVAKAFSFKHSCHSSLHCSFLRGTFI 280
Score = 27.6 bits (54), Expect(4) = 3e-034
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = -2 / -2
Query: 537 *MRMPLLQR*VTTPA 493
*MRMPLLQ *V TPA
Sbjct: 227 *MRMPLLQY*VMTPA 183
Score = 22.1 bits (42), Expect(4) = 5e-034
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3 / +3
Query: 537 SILVTAAFIASLAI 578
+ILVTAAFIA +
Sbjct: 228 NILVTAAFIAPFCV 269
>gb|BE360608.1|BE360608 DG1_64_B12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 515
Score = 135 bits (290), Expect = 5e-031
Identities = 52/111 (46%), Positives = 70/111 (63%)
Frame = +2 / +2
Query: 20 LLGSQYFLHAYGPIYXXXXXXXXXXXXXRNNSFRMFSNEDVTIGSWMLAMNVNHENTHAL 199
LLG++YF+HA G +Y +++S RMF EDVT+G+WMLAMNV HE+ A+
Sbjct: 5 LLGNEYFMHASGSLYALSSEVVEALATTKSDSLRMFDYEDVTVGAWMLAMNVKHEDNRAM 184
Query: 200 CEPDCTESSIAVWDIPKCSGLCHPEVKMLELHERKECTGGPTVAAEVSESE 352
C+ CT +SIAVWD KCSG C+ K+ +LH C+ PT+ EV E E
Sbjct: 185 CDSICTPTSIAVWDSKKCSGTCNIADKIKQLHNTTVCSKSPTLPPEVEEEE 337
>gb|CD430969.1|CD430969 ETH1_6_D05.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_6_D05_A002 3', mRNA sequence
Length = 748
Score = 135 bits (290), Expect = 5e-031
Identities = 52/111 (46%), Positives = 70/111 (63%)
Frame = +2 / +1
Query: 20 LLGSQYFLHAYGPIYXXXXXXXXXXXXXRNNSFRMFSNEDVTIGSWMLAMNVNHENTHAL 199
LLG++YF+HA G +Y +++S RMF EDVT+G+WMLAMNV HE+ A+
Sbjct: 79 LLGNEYFMHASGSLYALSSEVVEALATTKSDSLRMFDYEDVTVGAWMLAMNVKHEDNRAM 258
Query: 200 CEPDCTESSIAVWDIPKCSGLCHPEVKMLELHERKECTGGPTVAAEVSESE 352
C+ CT +SIAVWD KCSG C+ K+ +LH C+ PT+ EV E E
Sbjct: 259 CDSICTPTSIAVWDSKKCSGTCNIADKIKQLHNTTVCSKSPTLPPEVEEEE 411
>gb|CW150520.1|CW150520 104_551_11143453_148_36308_063 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11143453, DNA
sequence
Length = 557
Score = 125 bits (267), Expect = 8e-028
Identities = 48/51 (94%), Positives = 50/51 (98%)
Frame = +2 / +1
Query: 107 NNSFRMFSNEDVTIGSWMLAMNVNHENTHALCEPDCTESSIAVWDIPKCSG 259
++SFRMFSNEDVTIGSWMLAMNVNHENTHALCE DCTESSIAVWDIPKCSG
Sbjct: 280 SSSFRMFSNEDVTIGSWMLAMNVNHENTHALCEADCTESSIAVWDIPKCSG 432
Score = 116 bits (247), Expect = 5e-025
Identities = 45/55 (81%), Positives = 49/55 (89%)
Frame = +1 / +3
Query: 97 CIAKQQFPYVQQRGRYNWIVDACYERQP*EHTCTL*T*LHGVFNCCLGHPKMLRS 261
CI QFPYV QRG YNWI+DAC+ERQP*EHTCTL*+*LHGVFNCCLGH KMLR+
Sbjct: 270 CICLFQFPYV*QRGCYNWILDACHERQP*EHTCTL*S*LHGVFNCCLGHSKMLRA 434
Score = 110 bits (235), Expect = 2e-023
Identities = 43/48 (89%), Positives = 46/48 (95%)
Frame = -1 / -3
Query: 256 *AFWDVPNSN*RLRAVRFTKCMCVLMVDVHSKHPRSNCNVLVAEHTET 113
*AFW+VPNSN*RLRAV FTKCMCVLMVDVH KHPRSNCN+LVA+HTET
Sbjct: 429 *AFWNVPNSN*RLRAVSFTKCMCVLMVDVHGKHPRSNCNILVAKHTET 286
Score = 109 bits (232), Expect = 5e-023
Identities = 46/49 (93%), Positives = 47/49 (95%)
Frame = -2 / -1
Query: 258 PEHFGMSQTAIEDSVQSGSQSACVFSWLTFIASIHDPIVTSSLLNIRKL 112
PEHFGMSQTAIEDSVQS SQSACVFSWLTF+ASI DPIVTSSLLNIRKL
Sbjct: 431 PEHFGMSQTAIEDSVQSASQSACVFSWLTFMASIQDPIVTSSLLNIRKL 285
Score = 103 bits (219), Expect = 3e-021
Identities = 43/48 (89%), Positives = 44/48 (91%)
Frame = -3 / -2
Query: 257 LSILGCPKQQLKTPCSQVHKVHVCSHG*RS*QASTIQL*RPRC*TYGN 114
LSIL CPKQQLKTPCSQ+HKVHVCSHG*RS QAS IQL* PRC*TYGN
Sbjct: 430 LSILECPKQQLKTPCSQLHKVHVCSHG*RSWQASKIQL*HPRC*TYGN 287
>gb|CW477861.1|CW477861 fsbb001f235g16f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f235g16, DNA
sequence
Length = 752
Score = 124 bits (266), Expect = 1e-027
Identities = 47/51 (92%), Positives = 50/51 (98%)
Frame = +2 / +1
Query: 107 NNSFRMFSNEDVTIGSWMLAMNVNHENTHALCEPDCTESSIAVWDIPKCSG 259
++SFRMFSNEDVTIGSWMLAMNVNHENTHALCE DCTESS+AVWDIPKCSG
Sbjct: 505 SSSFRMFSNEDVTIGSWMLAMNVNHENTHALCEADCTESSVAVWDIPKCSG 657
Score = 115 bits (245), Expect = 9e-025
Identities = 45/55 (81%), Positives = 49/55 (89%)
Frame = +1 / +3
Query: 97 CIAKQQFPYVQQRGRYNWIVDACYERQP*EHTCTL*T*LHGVFNCCLGHPKMLRS 261
CI QFPYV QRG YNWI+DAC+ERQP*EHTCTL*+*LHGVF+CCLGH KMLRS
Sbjct: 495 CICLFQFPYV*QRGCYNWILDACHERQP*EHTCTL*S*LHGVFSCCLGHSKMLRS 659
Score = 112 bits (240), Expect = 4e-024
Identities = 44/49 (89%), Positives = 47/49 (95%)
Frame = -1 / -3
Query: 259 T*AFWDVPNSN*RLRAVRFTKCMCVLMVDVHSKHPRSNCNVLVAEHTET 113
T*AFW+VPNSN*RLRAV FTKCMCVLMVDVH KHPRSNCN+LVA+HTET
Sbjct: 657 T*AFWNVPNSN*RLRAVSFTKCMCVLMVDVHGKHPRSNCNILVAKHTET 511
Score = 106 bits (227), Expect = 3e-022
Identities = 45/49 (91%), Positives = 46/49 (93%)
Frame = -2 / -1
Query: 258 PEHFGMSQTAIEDSVQSGSQSACVFSWLTFIASIHDPIVTSSLLNIRKL 112
PEHFGMSQTA EDSVQS SQSACVFSWLTF+ASI DPIVTSSLLNIRKL
Sbjct: 656 PEHFGMSQTATEDSVQSASQSACVFSWLTFMASIQDPIVTSSLLNIRKL 510
Score = 105 bits (225), Expect = 5e-022
Identities = 44/49 (89%), Positives = 45/49 (91%)
Frame = -3 / -2
Query: 260 DLSILGCPKQQLKTPCSQVHKVHVCSHG*RS*QASTIQL*RPRC*TYGN 114
DLSIL CPKQQLKTPCSQ+HKVHVCSHG*RS QAS IQL* PRC*TYGN
Sbjct: 658 DLSILECPKQQLKTPCSQLHKVHVCSHG*RSWQASKIQL*HPRC*TYGN 512
>gb|CW477862.1|CW477862 fsbb001f235g16k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f235g16, DNA
sequence
Length = 751
Score = 124 bits (266), Expect = 1e-027
Identities = 47/51 (92%), Positives = 50/51 (98%)
Frame = +2 / -1
Query: 107 NNSFRMFSNEDVTIGSWMLAMNVNHENTHALCEPDCTESSIAVWDIPKCSG 259
++SFRMFSNEDVTIGSWMLAMNVNHENTHALCE DCTESS+AVWDIPKCSG
Sbjct: 334 SSSFRMFSNEDVTIGSWMLAMNVNHENTHALCEADCTESSVAVWDIPKCSG 182
Score = 115 bits (245), Expect = 9e-025
Identities = 45/55 (81%), Positives = 49/55 (89%)
Frame = +1 / -3
Query: 97 CIAKQQFPYVQQRGRYNWIVDACYERQP*EHTCTL*T*LHGVFNCCLGHPKMLRS 261
CI QFPYV QRG YNWI+DAC+ERQP*EHTCTL*+*LHGVF+CCLGH KMLRS
Sbjct: 344 CICLFQFPYV*QRGCYNWILDACHERQP*EHTCTL*S*LHGVFSCCLGHSKMLRS 180
Score = 112 bits (240), Expect = 4e-024
Identities = 44/49 (89%), Positives = 47/49 (95%)
Frame = -1 / +2
Query: 259 T*AFWDVPNSN*RLRAVRFTKCMCVLMVDVHSKHPRSNCNVLVAEHTET 113
T*AFW+VPNSN*RLRAV FTKCMCVLMVDVH KHPRSNCN+LVA+HTET
Sbjct: 182 T*AFWNVPNSN*RLRAVSFTKCMCVLMVDVHGKHPRSNCNILVAKHTET 328
Score = 106 bits (227), Expect = 3e-022
Identities = 45/49 (91%), Positives = 46/49 (93%)
Frame = -2 / +3
Query: 258 PEHFGMSQTAIEDSVQSGSQSACVFSWLTFIASIHDPIVTSSLLNIRKL 112
PEHFGMSQTA EDSVQS SQSACVFSWLTF+ASI DPIVTSSLLNIRKL
Sbjct: 183 PEHFGMSQTATEDSVQSASQSACVFSWLTFMASIQDPIVTSSLLNIRKL 329
Score = 105 bits (225), Expect = 5e-022
Identities = 44/49 (89%), Positives = 45/49 (91%)
Frame = -3 / +1
Query: 260 DLSILGCPKQQLKTPCSQVHKVHVCSHG*RS*QASTIQL*RPRC*TYGN 114
DLSIL CPKQQLKTPCSQ+HKVHVCSHG*RS QAS IQL* PRC*TYGN
Sbjct: 181 DLSILECPKQQLKTPCSQLHKVHVCSHG*RSWQASKIQL*HPRC*TYGN 327
>gb|CW333021.1|CW333021 104_830_11481721_116_36040_001 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481721, DNA
sequence
Length = 711
Score = 66.1 bits (138), Expect(5) = 1e-024
Identities = 24/28 (85%), Positives = 27/28 (96%)
Frame = +3 / -3
Query: 408 PHPIDVFGVFI*FIRRNHCGSTAQGTYS 491
PHP+DVFGVFI*FIR NHCGSTA+GTY+
Sbjct: 673 PHPVDVFGVFI*FIRYNHCGSTAEGTYT 590
Score = 60.6 bits (126), Expect(5) = 1e-021
Identities = 23/27 (85%), Positives = 23/27 (85%)
Frame = -3 / +2
Query: 488 IGSLSSAPAMIAPDESNEYSKHIYWVR 408
IGS S AP MI PDESNEYSKHIYWVR
Sbjct: 593 IGSFSGAPTMIVPDESNEYSKHIYWVR 673
Score = 36.3 bits (73), Expect(5) = 1e-024
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1 / -3
Query: 466 GALLKEPIVGWRRNLAL*QRHSHS 537
G+ + GWR NL L*QRHSHS
Sbjct: 616 GSTAEGTYTGWRHNLVL*QRHSHS 545
Score = 35.0 bits (70), Expect(5) = 1e-024
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = +3 / -2
Query: 372 GEQTTDLIVDLCPHP 416
G QTTDLIVDLCP P
Sbjct: 710 GAQTTDLIVDLCPSP 666
Score = 33.1 bits (66), Expect(5) = 1e-021
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = -3 / +2
Query: 572 KRSNEGCCDKN 540
KRSNEGCCDKN
Sbjct: 509 KRSNEGCCDKN 541
Score = 29.9 bits (59), Expect(5) = 1e-021
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = -1 / +1
Query: 418 IG*GHRSTIRSVVCSP 371
+G G RST+RSVVC+P
Sbjct: 664 LGEGQRSTMRSVVCAP 711
Score = 27.6 bits (54), Expect(5) = 1e-021
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = -2 / +2
Query: 537 *MRMPLLQR*VTTPA 493
*MRMPLLQ *V TPA
Sbjct: 545 *MRMPLLQY*VMTPA 589
Score = 25.4 bits (49), Expect(5) = 1e-021
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3 / +2
Query: 665 FPSNLLYNKTPLMFCYDTG 609
FPS + + FCYDTG
Sbjct: 437 FPSTPYFLYNKIPFCYDTG 493
Score = 24.4 bits (47), Expect(5) = 1e-024
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +2 / -2
Query: 623 RTLKEFCCIE 652
R+ KEFCCIE
Sbjct: 485 RSKKEFCCIE 456
Score = 23.5 bits (45), Expect(5) = 1e-024
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3 / -3
Query: 537 SILVTAAFIASLAI 578
+ILVTAAFIA A+
Sbjct: 544 NILVTAAFIAPFAL 503
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 865,212,711
Number of Sequences: 832831
Number of extensions: 12851774
Number of successful extensions: 84626
Number of sequences better than 1.0e-020: 14
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 19841884894
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)