TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4580194.2.1
(542 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD429947.1|CD429947 ETH1_16_D12.g1_A002 Ethylene-treated... 300 1e-083
gb|CX606941.1|CX606941 ANR1_5_G02.g1_A002 Anaerobic roots S... 300 5e-083
gb|BF657203.1|BF657203 OV2_21_H10.b1_A002 Ovary 2 (OV2) Sor... 300 9e-083
gb|CX607585.1|CX607585 ANR1_29_C07.g1_A002 Anaerobic roots ... 298 3e-082
gb|CX618297.1|CX618297 GABR1_38_F09.g1_A002 GA- or brassino... 296 1e-081
gb|CF433049.1|CF433049 NIT1_20_D04.g1_A002 Nitrogen-deficie... 277 7e-076
gb|BG159669.1|BG159669 OV2_7_E10.b1_A002 Ovary 2 (OV2) Sorg... 249 2e-067
gb|BE357050.1|BE357050 DG1_146_F01.b1_A002 Dark Grown 1 (DG... 252 3e-066
gb|BF656791.1|BF656791 OV2_21_H10.g1_A002 Ovary 2 (OV2) Sor... 197 1e-049
gb|CL167938.1|CL167938 104_365_10810450_114_31804_130 Sorgh... 175 6e-043
gb|CW154514.1|CW154514 104_556_11145636_148_36353_038 Sorgh... 175 6e-043
gb|CL167939.1|CL167939 104_365_10810450_116_31805_130 Sorgh... 168 7e-041
gb|CD427720.1|CD427720 ETH1_33_E10.g1_A002 Ethylene-treated... 144 1e-036
gb|CX620055.1|CX620055 GABR1_49_C08.g1_A002 GA- or brassino... 98 5e-024
>gb|CD429947.1|CD429947 ETH1_16_D12.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_16_D12_A002 5', mRNA sequence
Length = 673
Score = 300 bits (649), Expect(3) = 1e-083
Identities = 127/134 (94%), Positives = 127/134 (94%)
Frame = -3 / -3
Query: 540 RKAQSSIICICLPPVVQNPWGSKRAAAVMKAW*SQNPTACATGVLRLAKRFSNWYTLKKS 361
R AQSSIICICLPPVVQNPWGSK AAAVMKAW*SQ PTACATGVLRLAKRFSNWYTLKKS
Sbjct: 578 RNAQSSIICICLPPVVQNPWGSKSAAAVMKAW*SQKPTACATGVLRLAKRFSNWYTLKKS 399
Query: 360 VMVSLQQYLLPEHSHPLLQIFSCDFFILAFHVPAVSTSAIVPPTRIATAARASVHTMILF 181
VMVSLQQYLLPEHSHPLLQIFSCDFFI AFHVPAVSTSAIVPPTRIA AARASVHTM LF
Sbjct: 398 VMVSLQQYLLPEHSHPLLQIFSCDFFIWAFHVPAVSTSAIVPPTRIAAAARASVHTMTLF 219
Query: 180 RVFRFIFSLAEPPA 139
RVFRFIFSLAE PA
Sbjct: 218 RVFRFIFSLAERPA 177
Score = 286 bits (618), Expect(2) = 2e-078
Identities = 116/134 (86%), Positives = 117/134 (87%)
Frame = +2 / +1
Query: 140 AGGSAREKMKRKTRNKXXXXXXXXXXXXXXXGGTIALVLTAGTWKAKIKKSQEKICNKGW 319
AG SA EKMKRKTRNK GGTIALVLTAGTWKA+IKKSQEKICNKGW
Sbjct: 178 AGRSASEKMKRKTRNKVIVWTLALAAAAILVGGTIALVLTAGTWKAQIKKSQEKICNKGW 357
Query: 320 ECSGSKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTT 499
ECSGSKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTT
Sbjct: 358 ECSGSKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTT 537
Query: 500 GGKQMQMMELCAFL 541
GGKQMQMMELCAFL
Sbjct: 538 GGKQMQMMELCAFL 579
Score = 196 bits (423), Expect(2) = 2e-051
Identities = 84/118 (71%), Positives = 88/118 (74%)
Frame = +1 / +3
Query: 184 QDHRMDAGPGCSGDSGGRHDCAGAHGGDVEGQDKEVAGEDL*QGVGVLGEQVXXXXXXXX 363
Q HR+DAGPG GDSGGRHD AGAHGGDVEG DKEVAGEDL QGVGVLG+QV
Sbjct: 222 QGHRVDAGPGRGGDSGGRHDRAGAHGGDVEGPDKEVAGEDLQQGVGVLGQQVLLQRHHHR 401
Query: 364 XXXGVPVREPLXXXXXXXXXXXXVLGLPGLHHRRGPLRAPGVLHHRRQADADDGALRL 537
GVPVREPL +LGLPGLHHRRG LRAPGVLHHRRQADADDGALR+
Sbjct: 402 LLQGVPVREPLRQAQHPRRARRRLLGLPGLHHRRGALRAPGVLHHRRQADADDGALRV 575
Score = 28.6 bits (56), Expect(3) = 1e-083
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -1 / -2
Query: 86 WGSNLDLRNA 57
WGSNLDLRNA
Sbjct: 129 WGSNLDLRNA 100
Score = 27.6 bits (54), Expect(2) = 2e-078
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +3 / +1
Query: 57 RIPQIQIRAPA 89
RIPQIQIRAPA
Sbjct: 100 RIPQIQIRAPA 132
Score = 26.7 bits (52), Expect(2) = 2e-051
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +1 / +2
Query: 55 SAFLRSRFEPQ 87
+AFLRSRFEPQ
Sbjct: 98 AAFLRSRFEPQ 130
Score = 22.1 bits (42), Expect(3) = 1e-083
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -3 / -2
Query: 57 GCKRDRRER*LKIS 16
GCK RER*L+IS
Sbjct: 96 GCKCGCRER*LEIS 55
>gb|CX606941.1|CX606941 ANR1_5_G02.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_5_G02_A002 5', mRNA sequence
Length = 745
Score = 300 bits (649), Expect(3) = 5e-083
Identities = 127/134 (94%), Positives = 127/134 (94%)
Frame = -3 / -3
Query: 540 RKAQSSIICICLPPVVQNPWGSKRAAAVMKAW*SQNPTACATGVLRLAKRFSNWYTLKKS 361
R AQSSIICICLPPVVQNPWGSK AAAVMKAW*SQ PTACATGVLRLAKRFSNWYTLKKS
Sbjct: 551 RNAQSSIICICLPPVVQNPWGSKSAAAVMKAW*SQKPTACATGVLRLAKRFSNWYTLKKS 372
Query: 360 VMVSLQQYLLPEHSHPLLQIFSCDFFILAFHVPAVSTSAIVPPTRIATAARASVHTMILF 181
VMVSLQQYLLPEHSHPLLQIFSCDFFI AFHVPAVSTSAIVPPTRIA AARASVHTM LF
Sbjct: 371 VMVSLQQYLLPEHSHPLLQIFSCDFFIWAFHVPAVSTSAIVPPTRIAAAARASVHTMTLF 192
Query: 180 RVFRFIFSLAEPPA 139
RVFRFIFSLAE PA
Sbjct: 191 RVFRFIFSLAERPA 150
Score = 286 bits (618), Expect(2) = 8e-078
Identities = 116/134 (86%), Positives = 117/134 (87%)
Frame = +2 / +1
Query: 140 AGGSAREKMKRKTRNKXXXXXXXXXXXXXXXGGTIALVLTAGTWKAKIKKSQEKICNKGW 319
AG SA EKMKRKTRNK GGTIALVLTAGTWKA+IKKSQEKICNKGW
Sbjct: 151 AGRSASEKMKRKTRNKVIVWTLALAAAAILVGGTIALVLTAGTWKAQIKKSQEKICNKGW 330
Query: 320 ECSGSKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTT 499
ECSGSKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTT
Sbjct: 331 ECSGSKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTT 510
Query: 500 GGKQMQMMELCAFL 541
GGKQMQMMELCAFL
Sbjct: 511 GGKQMQMMELCAFL 552
Score = 196 bits (423), Expect(2) = 2e-050
Identities = 84/118 (71%), Positives = 88/118 (74%)
Frame = +1 / +3
Query: 184 QDHRMDAGPGCSGDSGGRHDCAGAHGGDVEGQDKEVAGEDL*QGVGVLGEQVXXXXXXXX 363
Q HR+DAGPG GDSGGRHD AGAHGGDVEG DKEVAGEDL QGVGVLG+QV
Sbjct: 195 QGHRVDAGPGRGGDSGGRHDRAGAHGGDVEGPDKEVAGEDLQQGVGVLGQQVLLQRHHHR 374
Query: 364 XXXGVPVREPLXXXXXXXXXXXXVLGLPGLHHRRGPLRAPGVLHHRRQADADDGALRL 537
GVPVREPL +LGLPGLHHRRG LRAPGVLHHRRQADADDGALR+
Sbjct: 375 LLQGVPVREPLRQAQHPRRARRRLLGLPGLHHRRGALRAPGVLHHRRQADADDGALRV 548
Score = 25.8 bits (50), Expect(3) = 5e-083
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -2 / -3
Query: 88 AGARIWI*GMR 56
AGARIWI GMR
Sbjct: 104 AGARIWIRGMR 72
Score = 25.8 bits (50), Expect(2) = 8e-078
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +3 / +1
Query: 57 RIPQIQIRAPA 89
RIP+IQIRAPA
Sbjct: 73 RIPRIQIRAPA 105
Score = 23.5 bits (45), Expect(2) = 2e-050
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +1 / +2
Query: 55 SAFLRSRFEPQ 87
+AFL SRFEPQ
Sbjct: 71 AAFLGSRFEPQ 103
Score = 22.1 bits (42), Expect(3) = 5e-083
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -3 / -2
Query: 57 GCKRDRRER*LKIS 16
GCK RER*L+IS
Sbjct: 69 GCKCGCRER*LEIS 28
>gb|BF657203.1|BF657203 OV2_21_H10.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 522
Score = 300 bits (649), Expect(2) = 9e-083
Identities = 127/134 (94%), Positives = 127/134 (94%)
Frame = -3 / -3
Query: 540 RKAQSSIICICLPPVVQNPWGSKRAAAVMKAW*SQNPTACATGVLRLAKRFSNWYTLKKS 361
R AQSSIICICLPPVVQNPWGSK AAAVMKAW*SQ PTACATGVLRLAKRFSNWYTLKKS
Sbjct: 517 RNAQSSIICICLPPVVQNPWGSKSAAAVMKAW*SQKPTACATGVLRLAKRFSNWYTLKKS 338
Query: 360 VMVSLQQYLLPEHSHPLLQIFSCDFFILAFHVPAVSTSAIVPPTRIATAARASVHTMILF 181
VMVSLQQYLLPEHSHPLLQIFSCDFFI AFHVPAVSTSAIVPPTRIA AARASVHTM LF
Sbjct: 337 VMVSLQQYLLPEHSHPLLQIFSCDFFIWAFHVPAVSTSAIVPPTRIAAAARASVHTMTLF 158
Query: 180 RVFRFIFSLAEPPA 139
RVFRFIFSLAE PA
Sbjct: 157 RVFRFIFSLAERPA 116
Score = 286 bits (618), Expect(2) = 2e-078
Identities = 116/134 (86%), Positives = 117/134 (87%)
Frame = +2 / +3
Query: 140 AGGSAREKMKRKTRNKXXXXXXXXXXXXXXXGGTIALVLTAGTWKAKIKKSQEKICNKGW 319
AG SA EKMKRKTRNK GGTIALVLTAGTWKA+IKKSQEKICNKGW
Sbjct: 117 AGRSASEKMKRKTRNKVIVWTLALAAAAILVGGTIALVLTAGTWKAQIKKSQEKICNKGW 296
Query: 320 ECSGSKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTT 499
ECSGSKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTT
Sbjct: 297 ECSGSKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTT 476
Query: 500 GGKQMQMMELCAFL 541
GGKQMQMMELCAFL
Sbjct: 477 GGKQMQMMELCAFL 518
Score = 196 bits (423), Expect(2) = 2e-051
Identities = 84/118 (71%), Positives = 88/118 (74%)
Frame = +1 / +2
Query: 184 QDHRMDAGPGCSGDSGGRHDCAGAHGGDVEGQDKEVAGEDL*QGVGVLGEQVXXXXXXXX 363
Q HR+DAGPG GDSGGRHD AGAHGGDVEG DKEVAGEDL QGVGVLG+QV
Sbjct: 161 QGHRVDAGPGRGGDSGGRHDRAGAHGGDVEGPDKEVAGEDLQQGVGVLGQQVLLQRHHHR 340
Query: 364 XXXGVPVREPLXXXXXXXXXXXXVLGLPGLHHRRGPLRAPGVLHHRRQADADDGALRL 537
GVPVREPL +LGLPGLHHRRG LRAPGVLHHRRQADADDGALR+
Sbjct: 341 LLQGVPVREPLRQAQHPRRARRRLLGLPGLHHRRGALRAPGVLHHRRQADADDGALRV 514
Score = 86.8 bits (183), Expect(3) = 1e-020
Identities = 35/44 (79%), Positives = 38/44 (86%)
Frame = -2 / -2
Query: 256 EHQRNRAAHQNRHCSQGQRPYDDLVPRLPLHLLSRRAPRCSLRR 125
EHQR+RAAHQNR QGQRP+DDLVPRLPLHLL+RRAPR L R
Sbjct: 233 EHQRDRAAHQNRRRGQGQRPHDDLVPRLPLHLLARRAPRRKLAR 102
Score = 28.6 bits (56), Expect(2) = 9e-083
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -1 / -2
Query: 86 WGSNLDLRNA 57
WGSNLDLRNA
Sbjct: 68 WGSNLDLRNA 39
Score = 28.1 bits (55), Expect(3) = 1e-020
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = -2 / -3
Query: 88 AGARIWI*GMR 56
AGARIWI*GMR
Sbjct: 70 AGARIWI*GMR 38
Score = 27.6 bits (54), Expect(2) = 2e-078
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +3 / +3
Query: 57 RIPQIQIRAPA 89
RIPQIQIRAPA
Sbjct: 39 RIPQIQIRAPA 71
Score = 26.7 bits (52), Expect(2) = 2e-051
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +1 / +1
Query: 55 SAFLRSRFEPQ 87
+AFLRSRFEPQ
Sbjct: 37 AAFLRSRFEPQ 69
Score = 24.0 bits (46), Expect(3) = 1e-020
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -2 / -2
Query: 445 VVPEPDGVRD 416
VVPE DGVRD
Sbjct: 422 VVPEADGVRD 393
>gb|CX607585.1|CX607585 ANR1_29_C07.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_29_C07_A002 5', mRNA sequence
Length = 764
Score = 298 bits (645), Expect(2) = 3e-082
Identities = 126/134 (94%), Positives = 127/134 (94%)
Frame = -3 / -3
Query: 540 RKAQSSIICICLPPVVQNPWGSKRAAAVMKAW*SQNPTACATGVLRLAKRFSNWYTLKKS 361
R AQSSIICICLPPVVQNPWGSK AAAVMKAW*SQ PTACATGVLRLAKRFSNWYTLKKS
Sbjct: 510 RNAQSSIICICLPPVVQNPWGSKSAAAVMKAW*SQKPTACATGVLRLAKRFSNWYTLKKS 331
Query: 360 VMVSLQQYLLPEHSHPLLQIFSCDFFILAFHVPAVSTSAIVPPTRIATAARASVHTMILF 181
VMVSLQQYLLPEHSHPLLQIFSCDFFI AFHVPAVSTSAIVPPTRIA AARASVHT+ LF
Sbjct: 330 VMVSLQQYLLPEHSHPLLQIFSCDFFIWAFHVPAVSTSAIVPPTRIAAAARASVHTVTLF 151
Query: 180 RVFRFIFSLAEPPA 139
RVFRFIFSLAE PA
Sbjct: 150 RVFRFIFSLAERPA 109
Score = 286 bits (619), Expect(2) = 2e-078
Identities = 116/134 (86%), Positives = 117/134 (87%)
Frame = +2 / +2
Query: 140 AGGSAREKMKRKTRNKXXXXXXXXXXXXXXXGGTIALVLTAGTWKAKIKKSQEKICNKGW 319
AG SA EKMKRKTRNK GGTIALVLTAGTWKA+IKKSQEKICNKGW
Sbjct: 110 AGRSASEKMKRKTRNKVTVWTLALAAAAILVGGTIALVLTAGTWKAQIKKSQEKICNKGW 289
Query: 320 ECSGSKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTT 499
ECSGSKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTT
Sbjct: 290 ECSGSKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTT 469
Query: 500 GGKQMQMMELCAFL 541
GGKQMQMMELCAFL
Sbjct: 470 GGKQMQMMELCAFL 511
Score = 196 bits (423), Expect(2) = 2e-051
Identities = 84/118 (71%), Positives = 88/118 (74%)
Frame = +1 / +1
Query: 184 QDHRMDAGPGCSGDSGGRHDCAGAHGGDVEGQDKEVAGEDL*QGVGVLGEQVXXXXXXXX 363
Q HR+DAGPG GDSGGRHD AGAHGGDVEG DKEVAGEDL QGVGVLG+QV
Sbjct: 154 QGHRVDAGPGRGGDSGGRHDRAGAHGGDVEGPDKEVAGEDLQQGVGVLGQQVLLQRHHHR 333
Query: 364 XXXGVPVREPLXXXXXXXXXXXXVLGLPGLHHRRGPLRAPGVLHHRRQADADDGALRL 537
GVPVREPL +LGLPGLHHRRG LRAPGVLHHRRQADADDGALR+
Sbjct: 334 LLQGVPVREPLRQAQHPRRARRRLLGLPGLHHRRGALRAPGVLHHRRQADADDGALRV 507
Score = 28.6 bits (56), Expect(2) = 3e-082
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -1 / -2
Query: 86 WGSNLDLRNA 57
WGSNLDLRNA
Sbjct: 61 WGSNLDLRNA 32
Score = 27.6 bits (54), Expect(2) = 2e-078
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +3 / +2
Query: 57 RIPQIQIRAPA 89
RIPQIQIRAPA
Sbjct: 32 RIPQIQIRAPA 64
Score = 26.7 bits (52), Expect(2) = 2e-051
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +1 / +3
Query: 55 SAFLRSRFEPQ 87
+AFLRSRFEPQ
Sbjct: 30 AAFLRSRFEPQ 62
>gb|CX618297.1|CX618297 GABR1_38_F09.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_38_F09_A002 5', mRNA sequence
Length = 782
Score = 296 bits (641), Expect(2) = 1e-081
Identities = 126/134 (94%), Positives = 126/134 (94%)
Frame = -3 / -3
Query: 540 RKAQSSIICICLPPVVQNPWGSKRAAAVMKAW*SQNPTACATGVLRLAKRFSNWYTLKKS 361
R AQSSIICICLP VVQNPWGSK AAAVMKAW*SQ PTACATGVLRLAKRFSNWYTLKKS
Sbjct: 492 RNAQSSIICICLPSVVQNPWGSKSAAAVMKAW*SQKPTACATGVLRLAKRFSNWYTLKKS 313
Query: 360 VMVSLQQYLLPEHSHPLLQIFSCDFFILAFHVPAVSTSAIVPPTRIATAARASVHTMILF 181
VMVSLQQYLLPEHSHPLLQIFSCDFFI AFHVPAVSTSAIVPPTRIA AARASVHTM LF
Sbjct: 312 VMVSLQQYLLPEHSHPLLQIFSCDFFIWAFHVPAVSTSAIVPPTRIAAAARASVHTMTLF 133
Query: 180 RVFRFIFSLAEPPA 139
RVFRFIFSLAE PA
Sbjct: 132 RVFRFIFSLAERPA 91
Score = 282 bits (611), Expect(2) = 2e-077
Identities = 115/134 (85%), Positives = 116/134 (86%)
Frame = +2 / +2
Query: 140 AGGSAREKMKRKTRNKXXXXXXXXXXXXXXXGGTIALVLTAGTWKAKIKKSQEKICNKGW 319
AG SA EKMKRKTRNK GGTIALVLTAGTWKA+IKKSQEKICNKGW
Sbjct: 92 AGRSASEKMKRKTRNKVIVWTLALAAAAILVGGTIALVLTAGTWKAQIKKSQEKICNKGW 271
Query: 320 ECSGSKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTT 499
ECSGSKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTT
Sbjct: 272 ECSGSKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTT 451
Query: 500 GGKQMQMMELCAFL 541
GKQMQMMELCAFL
Sbjct: 452 DGKQMQMMELCAFL 493
Score = 196 bits (423), Expect(2) = 2e-051
Identities = 84/118 (71%), Positives = 88/118 (74%)
Frame = +1 / +1
Query: 184 QDHRMDAGPGCSGDSGGRHDCAGAHGGDVEGQDKEVAGEDL*QGVGVLGEQVXXXXXXXX 363
Q HR+DAGPG GDSGGRHD AGAHGGDVEG DKEVAGEDL QGVGVLG+QV
Sbjct: 136 QGHRVDAGPGRGGDSGGRHDRAGAHGGDVEGPDKEVAGEDLQQGVGVLGQQVLLQRHHHR 315
Query: 364 XXXGVPVREPLXXXXXXXXXXXXVLGLPGLHHRRGPLRAPGVLHHRRQADADDGALRL 537
GVPVREPL +LGLPGLHHRRG LRAPGVLHHRRQADADDGALR+
Sbjct: 316 LLQGVPVREPLRQAQHPRRARRRLLGLPGLHHRRGALRAPGVLHHRRQADADDGALRV 489
Score = 28.6 bits (56), Expect(2) = 1e-081
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -1 / -2
Query: 86 WGSNLDLRNA 57
WGSNLDLRNA
Sbjct: 43 WGSNLDLRNA 14
Score = 27.6 bits (54), Expect(2) = 2e-077
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +3 / +2
Query: 57 RIPQIQIRAPA 89
RIPQIQIRAPA
Sbjct: 14 RIPQIQIRAPA 46
Score = 26.7 bits (52), Expect(2) = 2e-051
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +1 / +3
Query: 55 SAFLRSRFEPQ 87
+AFLRSRFEPQ
Sbjct: 12 AAFLRSRFEPQ 44
>gb|CF433049.1|CF433049 NIT1_20_D04.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_20_D04_A002 5', mRNA sequence
Length = 477
Score = 277 bits (599), Expect(2) = 7e-076
Identities = 118/125 (94%), Positives = 118/125 (94%)
Frame = -3 / -3
Query: 513 ICLPPVVQNPWGSKRAAAVMKAW*SQNPTACATGVLRLAKRFSNWYTLKKSVMVSLQQYL 334
ICLPPVVQNPWGSK AAAVMKAW*SQ PTA ATGVLRLAKRFSNWYTLKKSVMVSLQQYL
Sbjct: 475 ICLPPVVQNPWGSKSAAAVMKAW*SQKPTAYATGVLRLAKRFSNWYTLKKSVMVSLQQYL 296
Query: 333 LPEHSHPLLQIFSCDFFILAFHVPAVSTSAIVPPTRIATAARASVHTMILFRVFRFIFSL 154
LPEHSHPLLQIFSCDFFI AFHVPAVSTSAIVPPTRIA AARASVHTM LFRVFRFIFSL
Sbjct: 295 LPEHSHPLLQIFSCDFFIWAFHVPAVSTSAIVPPTRIAAAARASVHTMTLFRVFRFIFSL 116
Query: 153 AEPPA 139
AE PA
Sbjct: 115 AERPA 101
Score = 261 bits (565), Expect(2) = 4e-071
Identities = 106/125 (84%), Positives = 108/125 (86%)
Frame = +2 / +3
Query: 140 AGGSAREKMKRKTRNKXXXXXXXXXXXXXXXGGTIALVLTAGTWKAKIKKSQEKICNKGW 319
AG SA EKMKRKTRNK GGTIALVLTAGTWKA+IKKSQEKICNKGW
Sbjct: 102 AGRSASEKMKRKTRNKVIVWTLALAAAAILVGGTIALVLTAGTWKAQIKKSQEKICNKGW 281
Query: 320 ECSGSKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTT 499
ECSGSKYCCNDTITDFFKVYQFENLFAKRNTPVA+AVGFWDYQAFITAAALFEPQGFCTT
Sbjct: 282 ECSGSKYCCNDTITDFFKVYQFENLFAKRNTPVAYAVGFWDYQAFITAAALFEPQGFCTT 461
Query: 500 GGKQM 514
GGKQM
Sbjct: 462 GGKQM 476
Score = 179 bits (386), Expect(2) = 3e-046
Identities = 77/110 (70%), Positives = 80/110 (72%)
Frame = +1 / +2
Query: 184 QDHRMDAGPGCSGDSGGRHDCAGAHGGDVEGQDKEVAGEDL*QGVGVLGEQVXXXXXXXX 363
Q HR+DAGPG GDSGGRHD AGAHGGDVEG DKEVAGEDL QGVGVLG+QV
Sbjct: 146 QGHRVDAGPGRGGDSGGRHDRAGAHGGDVEGPDKEVAGEDLQQGVGVLGQQVLLQRHHHR 325
Query: 364 XXXGVPVREPLXXXXXXXXXXXXVLGLPGLHHRRGPLRAPGVLHHRRQAD 513
GVPVREPL +LGLPGLHHRRG LRAPGVLHHRRQAD
Sbjct: 326 LLQGVPVREPLRQAQHPRRVRRRLLGLPGLHHRRGALRAPGVLHHRRQAD 475
Score = 86.8 bits (183), Expect(3) = 8e-021
Identities = 35/44 (79%), Positives = 38/44 (86%)
Frame = -2 / -2
Query: 256 EHQRNRAAHQNRHCSQGQRPYDDLVPRLPLHLLSRRAPRCSLRR 125
EHQR+RAAHQNR QGQRP+DDLVPRLPLHLL+RRAPR L R
Sbjct: 218 EHQRDRAAHQNRRRGQGQRPHDDLVPRLPLHLLARRAPRRKLAR 87
Score = 28.6 bits (56), Expect(2) = 7e-076
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -1 / -2
Query: 86 WGSNLDLRNA 57
WGSNLDLRNA
Sbjct: 53 WGSNLDLRNA 24
Score = 28.1 bits (55), Expect(3) = 8e-021
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = -2 / -3
Query: 88 AGARIWI*GMR 56
AGARIWI*GMR
Sbjct: 55 AGARIWI*GMR 23
Score = 27.6 bits (54), Expect(2) = 4e-071
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +3 / +3
Query: 57 RIPQIQIRAPA 89
RIPQIQIRAPA
Sbjct: 24 RIPQIQIRAPA 56
Score = 26.7 bits (52), Expect(2) = 3e-046
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +1 / +1
Query: 55 SAFLRSRFEPQ 87
+AFLRSRFEPQ
Sbjct: 22 AAFLRSRFEPQ 54
Score = 24.0 bits (46), Expect(3) = 8e-021
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -2 / -2
Query: 445 VVPEPDGVRD 416
VVPE DGVRD
Sbjct: 407 VVPEADGVRD 378
>gb|BG159669.1|BG159669 OV2_7_E10.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 445
Score = 249 bits (538), Expect(2) = 2e-067
Identities = 107/114 (93%), Positives = 107/114 (93%)
Frame = -3 / -3
Query: 480 GSKRAAAVMKAW*SQNPTACATGVLRLAKRFSNWYTLKKSVMVSLQQYLLPEHSHPLLQI 301
GSK AAAVMKAW*SQ PTACATGVLRLAKRFSNWYTLKKS MVSLQQYLLPEHSHPLLQI
Sbjct: 443 GSKSAAAVMKAW*SQKPTACATGVLRLAKRFSNWYTLKKSAMVSLQQYLLPEHSHPLLQI 264
Query: 300 FSCDFFILAFHVPAVSTSAIVPPTRIATAARASVHTMILFRVFRFIFSLAEPPA 139
FSCDFFI AFHVPAVSTSAIVPPTRIA AARASVHTM LFRVFRFIFSLAE PA
Sbjct: 263 FSCDFFIWAFHVPAVSTSAIVPPTRIAAAARASVHTMTLFRVFRFIFSLAERPA 102
Score = 233 bits (503), Expect(2) = 1e-062
Identities = 95/114 (83%), Positives = 96/114 (84%)
Frame = +2 / +1
Query: 140 AGGSAREKMKRKTRNKXXXXXXXXXXXXXXXGGTIALVLTAGTWKAKIKKSQEKICNKGW 319
AG SA EKMKRKTRNK GGTIALVLTAGTWKA+IKKSQEKICNKGW
Sbjct: 103 AGRSASEKMKRKTRNKVIVWTLALAAAAILVGGTIALVLTAGTWKAQIKKSQEKICNKGW 282
Query: 320 ECSGSKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEP 481
ECSGSKYCCNDTI DFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEP
Sbjct: 283 ECSGSKYCCNDTIADFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEP 444
Score = 147 bits (316), Expect(2) = 1e-036
Identities = 65/99 (65%), Positives = 68/99 (68%)
Frame = +1 / +3
Query: 184 QDHRMDAGPGCSGDSGGRHDCAGAHGGDVEGQDKEVAGEDL*QGVGVLGEQVXXXXXXXX 363
Q HR+DAGPG GDSGGR D AGAHGGDVEG DKEVAGEDL QGVGVLG+QV
Sbjct: 147 QGHRVDAGPGRGGDSGGRDDRAGAHGGDVEGPDKEVAGEDLQQGVGVLGQQVLLQRHHRR 326
Query: 364 XXXGVPVREPLXXXXXXXXXXXXVLGLPGLHHRRGPLRA 480
GVPVREPL +LGLPGLHHRRG LRA
Sbjct: 327 LLQGVPVREPLRQAQHPRRARRRLLGLPGLHHRRGALRA 443
Score = 28.6 bits (56), Expect(2) = 2e-067
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -1 / -2
Query: 86 WGSNLDLRNA 57
WGSNLDLRNA
Sbjct: 54 WGSNLDLRNA 25
Score = 27.6 bits (54), Expect(2) = 1e-062
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +3 / +1
Query: 57 RIPQIQIRAPA 89
RIPQIQIRAPA
Sbjct: 25 RIPQIQIRAPA 57
Score = 26.7 bits (52), Expect(2) = 1e-036
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +1 / +2
Query: 55 SAFLRSRFEPQ 87
+AFLRSRFEPQ
Sbjct: 23 AAFLRSRFEPQ 55
>gb|BE357050.1|BE357050 DG1_146_F01.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 554
Score = 252 bits (545), Expect = 3e-066
Identities = 99/100 (99%), Positives = 100/100 (100%)
Frame = +2 / +2
Query: 242 IALVLTAGTWKAKIKKSQEKICNKGWECSGSKYCCNDTITDFFKVYQFENLFAKRNTPVA 421
IALVLTAGTWKA+IKKSQEKICNKGWECSGSKYCCNDTITDFFKVYQFENLFAKRNTPVA
Sbjct: 11 IALVLTAGTWKAQIKKSQEKICNKGWECSGSKYCCNDTITDFFKVYQFENLFAKRNTPVA 190
Query: 422 HAVGFWDYQAFITAAALFEPQGFCTTGGKQMQMMELCAFL 541
HAVGFWDYQAFITAAALFEPQGFCTTGGKQMQMMELCAFL
Sbjct: 191 HAVGFWDYQAFITAAALFEPQGFCTTGGKQMQMMELCAFL 310
Score = 231 bits (499), Expect = 6e-060
Identities = 96/100 (96%), Positives = 96/100 (96%)
Frame = -3 / -3
Query: 540 RKAQSSIICICLPPVVQNPWGSKRAAAVMKAW*SQNPTACATGVLRLAKRFSNWYTLKKS 361
R AQSSIICICLPPVVQNPWGSK AAAVMKAW*SQ PTACATGVLRLAKRFSNWYTLKKS
Sbjct: 309 RNAQSSIICICLPPVVQNPWGSKSAAAVMKAW*SQKPTACATGVLRLAKRFSNWYTLKKS 130
Query: 360 VMVSLQQYLLPEHSHPLLQIFSCDFFILAFHVPAVSTSAI 241
VMVSLQQYLLPEHSHPLLQIFSCDFFI AFHVPAVSTSAI
Sbjct: 129 VMVSLQQYLLPEHSHPLLQIFSCDFFIWAFHVPAVSTSAI 10
Score = 159 bits (341), Expect = 4e-038
Identities = 70/101 (69%), Positives = 73/101 (72%)
Frame = +1 / +1
Query: 235 RHDCAGAHGGDVEGQDKEVAGEDL*QGVGVLGEQVXXXXXXXXXXXGVPVREPLXXXXXX 414
R D AGAHGGDVEG DKEVAGEDL QGVGVLG+QV GVPVREPL
Sbjct: 4 RGDRAGAHGGDVEGPDKEVAGEDLQQGVGVLGQQVLLQRHHHRLLQGVPVREPLRQAQHP 183
Query: 415 XXXXXXVLGLPGLHHRRGPLRAPGVLHHRRQADADDGALRL 537
+LGLPGLHHRRG LRAPGVLHHRRQADADDGALR+
Sbjct: 184 RRARRRLLGLPGLHHRRGALRAPGVLHHRRQADADDGALRV 306
>gb|BF656791.1|BF656791 OV2_21_H10.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 663
Score = 197 bits (424), Expect = 1e-049
Identities = 76/78 (97%), Positives = 76/78 (97%)
Frame = +2 / +3
Query: 308 NKGWECSGSKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQG 487
NKGWECSGSKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQG
Sbjct: 3 NKGWECSGSKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQG 182
Query: 488 FCTTGGKQMQMMELCAFL 541
FCTTGG MQMMELCAFL
Sbjct: 183 FCTTGGN*MQMMELCAFL 236
Score = 177 bits (380), Expect = 2e-043
Identities = 74/78 (94%), Positives = 74/78 (94%)
Frame = -3 / -3
Query: 540 RKAQSSIICICLPPVVQNPWGSKRAAAVMKAW*SQNPTACATGVLRLAKRFSNWYTLKKS 361
R AQSSIICI LPPVVQNPWGSK AAAVMKAW*SQ PTACATGVLRLAKRFSNWYTLKKS
Sbjct: 235 RNAQSSIICI*LPPVVQNPWGSKSAAAVMKAW*SQKPTACATGVLRLAKRFSNWYTLKKS 56
Query: 360 VMVSLQQYLLPEHSHPLL 307
VMVSLQQYLLPEHSHPLL
Sbjct: 55 VMVSLQQYLLPEHSHPLL 2
Score = 110 bits (235), Expect = 2e-023
Identities = 48/76 (63%), Positives = 51/76 (67%)
Frame = +1 / +2
Query: 310 QGVGVLGEQVXXXXXXXXXXXGVPVREPLXXXXXXXXXXXXVLGLPGLHHRRGPLRAPGV 489
QGVGVLG+QV GVPVREPL +LGLPGLHHRRG LRAPGV
Sbjct: 5 QGVGVLGQQVLLQRHHHRLLQGVPVREPLRQAQHPRRARRRLLGLPGLHHRRGALRAPGV 184
Query: 490 LHHRRQADADDGALRL 537
LHHRRQ DADDGALR+
Sbjct: 185 LHHRRQLDADDGALRV 232
>gb|CL167938.1|CL167938 104_365_10810450_114_31804_130 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10810450, DNA
sequence
Length = 796
Score = 175 bits (376), Expect = 6e-043
Identities = 67/102 (65%), Positives = 80/102 (78%)
Frame = +2 / +1
Query: 236 GTIALVLTAGTWKAKIKKSQEKICNKGWECSGSKYCCNDTITDFFKVYQFENLFAKRNTP 415
G L+L T A + EK+C+KGWECSGS++CCN+TI DFFK YQFE LF KRN+
Sbjct: 337 GAALLLLLLATLAAAVMAGGEKVCDKGWECSGSRFCCNETIGDFFKAYQFEELFPKRNSD 516
Query: 416 VAHAVGFWDYQAFITAAALFEPQGFCTTGGKQMQMMELCAFL 541
+AHA GFWDY+AFITAAALFEP+GF TTGGK+M MME+ AFL
Sbjct: 517 LAHAAGFWDYKAFITAAALFEPRGFGTTGGKEMGMMEVAAFL 642
Score = 122 bits (260), Expect = 6e-027
Identities = 62/102 (60%), Positives = 66/102 (64%)
Frame = -3 / -3
Query: 540 RKAQSSIICICLPPVVQNPWGSKRAAAVMKAW*SQNPTACATGVLRLAKRFSNWYTLKKS 361
RKA +SI+ I LPPVV NP GSK AAAVMKA *SQ P A A LRL K SNWY LKKS
Sbjct: 641 RKAATSIMPISLPPVVPNPRGSKSAAAVMKAL*SQKPAAWARSELRLGKSSSNWYALKKS 462
Query: 360 VMVSLQQYLLPEHSHPLLQIFSCDFFILAFHVPAVSTSAIVP 235
MVSLQQ LP HSHPL Q FS A V + S+S P
Sbjct: 461 PMVSLQQNRLPLHSHPLSQTFSPPAITAAAKVASRSSSNAAP 336
>gb|CW154514.1|CW154514 104_556_11145636_148_36353_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11145636, DNA
sequence
Length = 641
Score = 175 bits (376), Expect = 6e-043
Identities = 67/102 (65%), Positives = 80/102 (78%)
Frame = +2 / -2
Query: 236 GTIALVLTAGTWKAKIKKSQEKICNKGWECSGSKYCCNDTITDFFKVYQFENLFAKRNTP 415
G L+L T A + EK+C+KGWECSGS++CCN+TI DFFK YQFE LF KRN+
Sbjct: 562 GAALLLLLLATLAAAVMAGGEKVCDKGWECSGSRFCCNETIGDFFKAYQFEELFPKRNSD 383
Query: 416 VAHAVGFWDYQAFITAAALFEPQGFCTTGGKQMQMMELCAFL 541
+AHA GFWDY+AFITAAALFEP+GF TTGGK+M MME+ AFL
Sbjct: 382 LAHAAGFWDYKAFITAAALFEPRGFGTTGGKEMGMMEVAAFL 257
Score = 122 bits (260), Expect = 6e-027
Identities = 62/102 (60%), Positives = 66/102 (64%)
Frame = -3 / +3
Query: 540 RKAQSSIICICLPPVVQNPWGSKRAAAVMKAW*SQNPTACATGVLRLAKRFSNWYTLKKS 361
RKA +SI+ I LPPVV NP GSK AAAVMKA *SQ P A A LRL K SNWY LKKS
Sbjct: 258 RKAATSIMPISLPPVVPNPRGSKSAAAVMKAL*SQKPAAWARSELRLGKSSSNWYALKKS 437
Query: 360 VMVSLQQYLLPEHSHPLLQIFSCDFFILAFHVPAVSTSAIVP 235
MVSLQQ LP HSHPL Q FS A V + S+S P
Sbjct: 438 PMVSLQQNRLPLHSHPLSQTFSPPAITAAAKVASRSSSNAAP 563
>gb|CL167939.1|CL167939 104_365_10810450_116_31805_130 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10810450, DNA
sequence
Length = 715
Score = 168 bits (361), Expect = 7e-041
Identities = 62/82 (75%), Positives = 73/82 (89%)
Frame = +2 / -1
Query: 296 EKICNKGWECSGSKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALF 475
EK+C+KGWECSGS++CCN+TI DFFK YQFE LF KRN+ +AHA GFWDY+AFITAAALF
Sbjct: 712 EKVCDKGWECSGSRFCCNETIGDFFKAYQFEELFPKRNSDLAHAAGFWDYKAFITAAALF 533
Query: 476 EPQGFCTTGGKQMQMMELCAFL 541
EP+GF TTGGK+M MME+ AFL
Sbjct: 532 EPRGFGTTGGKEMGMMEVAAFL 467
Score = 118 bits (253), Expect = 5e-026
Identities = 57/82 (69%), Positives = 59/82 (71%)
Frame = -3 / +3
Query: 540 RKAQSSIICICLPPVVQNPWGSKRAAAVMKAW*SQNPTACATGVLRLAKRFSNWYTLKKS 361
RKA +SI+ I LPPVV NP GSK AAAVMKA *SQ P A A LRL K SNWY LKKS
Sbjct: 468 RKAATSIMPISLPPVVPNPRGSKSAAAVMKAL*SQKPAAWARSELRLGKSSSNWYALKKS 647
Query: 360 VMVSLQQYLLPEHSHPLLQIFS 295
MVSLQQ LP HSHPL Q FS
Sbjct: 648 PMVSLQQNRLPLHSHPLSQTFS 713
>gb|CD427720.1|CD427720 ETH1_33_E10.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_33_E10_A002 5', mRNA sequence
Length = 317
Score = 144 bits (309), Expect(3) = 1e-036
Identities = 62/66 (93%), Positives = 62/66 (93%)
Frame = -3 / -2
Query: 336 LLPEHSHPLLQIFSCDFFILAFHVPAVSTSAIVPPTRIATAARASVHTMILFRVFRFIFS 157
LLPEHSHPLLQIFSCDFFI AFHVPAVSTSAIVPPTRIA AARASVHTM LFRVFRFIFS
Sbjct: 316 LLPEHSHPLLQIFSCDFFI*AFHVPAVSTSAIVPPTRIAAAARASVHTMTLFRVFRFIFS 137
Query: 156 LAEPPA 139
LAE PA
Sbjct: 136 LAERPA 119
Score = 111 bits (236), Expect(2) = 2e-026
Identities = 48/66 (72%), Positives = 48/66 (72%)
Frame = +2 / +3
Query: 140 AGGSAREKMKRKTRNKXXXXXXXXXXXXXXXGGTIALVLTAGTWKAKIKKSQEKICNKGW 319
AG SA EKMKRKTRNK GGTIALVLTAGTWKA IKKSQEKICNKGW
Sbjct: 120 AGRSASEKMKRKTRNKVIVWTLALAAAAILVGGTIALVLTAGTWKA*IKKSQEKICNKGW 299
Query: 320 ECSGSK 337
ECSGSK
Sbjct: 300 ECSGSK 317
Score = 105 bits (224), Expect(2) = 2e-024
Identities = 43/51 (84%), Positives = 45/51 (88%)
Frame = +1 / +2
Query: 184 QDHRMDAGPGCSGDSGGRHDCAGAHGGDVEGQDKEVAGEDL*QGVGVLGEQ 336
Q HR+DAGPG GDSGGRHD AGAHGGDVEG DKEVAGEDL QGVGVLG+Q
Sbjct: 164 QGHRVDAGPGRGGDSGGRHDRAGAHGGDVEGLDKEVAGEDLQQGVGVLGQQ 316
Score = 28.6 bits (56), Expect(3) = 1e-036
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -1 / -1
Query: 86 WGSNLDLRNA 57
WGSNLDLRNA
Sbjct: 71 WGSNLDLRNA 42
Score = 27.6 bits (54), Expect(2) = 2e-026
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +3 / +3
Query: 57 RIPQIQIRAPA 89
RIPQIQIRAPA
Sbjct: 42 RIPQIQIRAPA 74
Score = 26.7 bits (52), Expect(2) = 2e-024
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +1 / +1
Query: 55 SAFLRSRFEPQ 87
+AFLRSRFEPQ
Sbjct: 40 AAFLRSRFEPQ 72
Score = 18.0 bits (33), Expect(3) = 1e-036
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -3 / -1
Query: 57 GCKRDRRER*L 25
GCK RER*L
Sbjct: 38 GCKCGCRER*L 6
>gb|CX620055.1|CX620055 GABR1_49_C08.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_49_C08_A002 5', mRNA sequence
Length = 428
Score = 98.2 bits (208), Expect(3) = 5e-024
Identities = 43/46 (93%), Positives = 43/46 (93%)
Frame = -3 / -3
Query: 276 AFHVPAVSTSAIVPPTRIATAARASVHTMILFRVFRFIFSLAEPPA 139
AFHVPAVSTSAIVPPTRIA AARASVHTM LFRVFRFIFSLAE PA
Sbjct: 426 AFHVPAVSTSAIVPPTRIAAAARASVHTMTLFRVFRFIFSLAERPA 289
Score = 28.6 bits (56), Expect(3) = 5e-024
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -1 / -2
Query: 86 WGSNLDLRNA 57
WGSNLDLRNA
Sbjct: 241 WGSNLDLRNA 212
Score = 22.1 bits (42), Expect(3) = 5e-024
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -3 / -2
Query: 57 GCKRDRRER*LKIS 16
GCK RER*L+IS
Sbjct: 208 GCKCGCRER*LEIS 167
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 429,495,236
Number of Sequences: 832831
Number of extensions: 5263561
Number of successful extensions: 102371
Number of sequences better than 1.0e-020: 15
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 15195107151
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)