TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4534747.2.1
(628 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW363768.1|CW363768 fsbb001f035i09k0 Sorghum methylation... 170 1e-067
gb|CW223651.1|CW223651 104_659_11203029_148_37186_085 Sorgh... 149 4e-064
gb|CN134750.1|CN134750 OX1_28_E12.b1_A002 Oxidatively-stres... 159 2e-063
gb|CW353450.1|CW353450 fsbb001f016d09f0 Sorghum methylation... 159 5e-063
gb|CF489387.1|CF489387 POL1_57_F11.b1_A002 Pollen Sorghum b... 156 5e-060
gb|CW365891.1|CW365891 fsbb001f038k04k0 Sorghum methylation... 156 5e-060
gb|CW365890.1|CW365890 fsbb001f038k04f0 Sorghum methylation... 156 5e-060
gb|BG103243.1|BG103243 RHIZ2_19_H12.g1_A003 Rhizome2 (RHIZ2... 150 2e-058
gb|CD209113.1|CD209113 HS1_46_A12.b1_A012 Heat-shocked seed... 148 1e-057
gb|CW105163.1|CW105163 104_474_11012772_116_34453_042 Sorgh... 148 6e-056
gb|CN149831.1|CN149831 WOUND1_65_D05.b1_A002 Wounded leaves... 148 6e-056
gb|CW403691.1|CW403691 fsbb001f095i13k0 Sorghum methylation... 148 6e-056
gb|CX606300.1|CX606300 ANR1_2_F08.b1_A002 Anaerobic roots S... 149 1e-055
gb|CW176244.1|CW176244 104_589_11158384_148_36680_062 Sorgh... 144 3e-054
gb|CF489555.1|CF489555 POL1_58_F10.b1_A002 Pollen Sorghum b... 134 5e-054
gb|CW073807.1|CW073807 104_340_10781623_116_31470_103 Sorgh... 124 7e-054
gb|CN147521.1|CN147521 WOUND1_50_F12.b1_A002 Wounded leaves... 141 6e-053
gb|CW308233.1|CW308233 104_796_11468560_116_35731_054 Sorgh... 138 3e-051
gb|CW311717.1|CW311717 104_801_11470377_116_36277_041 Sorgh... 139 3e-049
gb|BF422042.1|BF422042 FM1_12_C02.g1_A003 Floral-Induced Me... 125 4e-049
gb|BE597334.1|BE597334 PI1_72_B09.g1_A002 Pathogen induced ... 111 1e-048
gb|AW565318.1|AW565318 LG1_342_A06.g1_A002 Light Grown 1 (L... 109 5e-048
gb|CW088288.1|CW088288 104_433_10948097_114_32572_075 Sorgh... 122 1e-044
gb|CW088290.1|CW088290 104_433_10948097_250_32620_075 Sorgh... 122 1e-044
gb|BF705043.1|BF705043 RHIZ2_1_F10.g1_A003 Rhizome2 (RHIZ2)... 103 2e-042
gb|CW280288.1|CW280288 104_755_11407540_148_35446_008 Sorgh... 165 5e-040
gb|CW403690.1|CW403690 fsbb001f095i13f0 Sorghum methylation... 91 4e-039
gb|CD462204.1|CD462204 SA1_40_B09.b1_A002 Salicylic acid-tr... 103 1e-038
gb|BM329541.1|BM329541 PIC1_39_D08.g1_A002 Pathogen-infecte... 103 1e-038
gb|BE596005.1|BE596005 PI1_51_B03.g1_A002 Pathogen induced ... 103 1e-038
gb|CN147606.1|CN147606 WOUND1_50_F12.g1_A002 Wounded leaves... 148 2e-037
gb|CW034726.1|CW034726 104_265_10502729_114_30378 Sorghum m... 139 2e-036
gb|BG357481.1|BG357481 OV2_30_D12.g1_A002 Ovary 2 (OV2) Sor... 104 4e-035
gb|BE594970.1|BE594970 PI1_48_B08.g1_A002 Pathogen induced ... 103 1e-034
gb|AW923900.1|AW923900 WS1_30_E12.b1_A002 Water-stressed 1 ... 104 1e-034
gb|CW363767.1|CW363767 fsbb001f035i09f0 Sorghum methylation... 107 3e-034
gb|CW038426.1|CW038426 104_270_10504920_115_30386 Sorghum m... 87 6e-034
gb|CW111205.1|CW111205 104_484_11104174_148_34528_089 Sorgh... 143 3e-033
gb|CN126293.1|CN126293 RHOH1_16_G04.b1_A002 Acid- and alkal... 104 1e-032
gb|CF074385.1|CF074385 FE1_24_H07.b1_A002 Iron-deficient se... 103 2e-032
gb|CN126382.1|CN126382 RHOH1_16_G04.g1_A002 Acid- and alkal... 102 5e-032
gb|CW310536.1|CW310536 104_799_11469765_116_37434_083 Sorgh... 138 5e-032
gb|BE362057.1|BE362057 DG1_84_G12.b1_A002 Dark Grown 1 (DG1... 138 7e-032
gb|BM330114.1|BM330114 PIC1_47_C12.g1_A002 Pathogen-infecte... 79 3e-031
gb|CW308234.1|CW308234 104_796_11468560_148_35739_054 Sorgh... 134 9e-031
gb|CF485574.1|CF485574 POL1_32_G12.b1_A002 Pollen Sorghum b... 104 8e-030
gb|CD427064.1|CD427064 SA1_17_G05.b1_A002 Salicylic acid-tr... 94 3e-029
gb|BM331672.1|BM331672 PIC1_59_C05.g1_A002 Pathogen-infecte... 77 5e-029
gb|BM329226.1|BM329226 PIC1_35_A07.g1_A002 Pathogen-infecte... 77 5e-029
gb|BG052508.1|BG052508 RHIZ2_26_A04.g1_A003 Rhizome2 (RHIZ2... 97 1e-028
gb|BF480784.1|BF480784 FM1_14_H09.g1_A003 Floral-Induced Me... 103 2e-028
gb|CX613644.1|CX613644 GABR1_9_H06.b1_A002 GA- or brassinol... 95 2e-028
gb|AW671681.1|AW671681 LG1_349_E04.b1_A002 Light Grown 1 (L... 77 3e-028
gb|AZ922789.1|AZ922789 SLCot4E02 Sorghum bicolor SLCot Sorg... 106 4e-028
gb|CW270918.1|CW270918 104_742_11402708_148_35335_066 Sorgh... 116 5e-028
gb|CW368244.1|CW368244 fsbb001f042b22k0 Sorghum methylation... 95 1e-027
gb|CD423436.1|CD423436 SA1_23_C04.b1_A002 Salicylic acid-tr... 104 2e-027
gb|CW311718.1|CW311718 104_801_11470377_148_36278_041 Sorgh... 122 7e-027
gb|CD236116.1|CD236116 SS1_32_H04.b1_A012 Salt-stressed see... 74 1e-026
gb|CW501464.1|CW501464 fsbb001f297e18f0 Sorghum methylation... 98 1e-024
gb|CW328501.1|CW328501 104_824_11479337_116_35987_069 Sorgh... 98 1e-024
gb|CW441737.1|CW441737 fsbb001f161a13f0 Sorghum methylation... 114 2e-024
gb|AW679681.1|AW679681 WS1_30_E12.g1_A002 Water-stressed 1 ... 104 2e-024
gb|BG053517.1|BG053517 RHIZ2_10_B08.g1_A003 Rhizome2 (RHIZ2... 103 2e-023
gb|CW491307.1|CW491307 fsbb001f281b24f0 Sorghum methylation... 98 1e-022
gb|CW151320.1|CW151320 104_552_11143873_148_36316_013 Sorgh... 92 1e-022
gb|CF486256.1|CF486256 POL1_36_E02.g1_A002 Pollen Sorghum b... 103 2e-022
gb|CW105164.1|CW105164 104_474_11012772_148_34449_042 Sorgh... 91 2e-021
gb|BE362182.1|BE362182 DG1_84_G12.g1_A002 Dark Grown 1 (DG1... 81 4e-021
>gb|CW363768.1|CW363768 fsbb001f035i09k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f035i09, DNA
sequence
Length = 716
Score = 170 bits (365), Expect(2) = 1e-067
Identities = 67/77 (87%), Positives = 69/77 (89%)
Frame = +2 / +2
Query: 38 LEFNAEPTDARSTSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTTPFKGDSN 217
LEF AEPT ARS SFVGTHEYLAPEI+RG+GHGSAVDWWTFGIFLYELLHG TPFKG N
Sbjct: 47 LEFTAEPTSARSMSFVGTHEYLAPEIIRGDGHGSAVDWWTFGIFLYELLHGATPFKGSGN 226
Query: 218 RATLCNVVDQPLRFPDA 268
RATL NVV QPLRFPDA
Sbjct: 227 RATLFNVVAQPLRFPDA 277
Score = 135 bits (290), Expect(2) = 6e-043
Identities = 60/77 (77%), Positives = 63/77 (81%)
Frame = -2 / -3
Query: 267 ASGNRSGWSTTLHSVARLLSPLNGVVPWRSSYRKMPKVHQSTALPWPSPLTISGARYSCV 88
ASGN SG +TTL SVAR PL GV P RSS RKMPKVHQSTALPWPSP ISGARYS V
Sbjct: 276 ASGNLSGCATTLKSVARFPEPLKGVAPCRSS*RKMPKVHQSTALPWPSPRMISGARYSWV 97
Query: 87 PTNDVDRASVGSALNSS 37
PTND+DRA VGSA+NSS
Sbjct: 96 PTNDMDRALVGSAVNSS 46
Score = 107 bits (229), Expect(2) = 1e-067
Identities = 42/64 (65%), Positives = 51/64 (79%)
Frame = +2 / +2
Query: 284 VSTVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPDPADLGR 463
VS ARDLIRGLL K+P R+A+RRGAAE+KQHPFF+GVNWALVR A PP +PD A +
Sbjct: 284 VSAAARDLIRGLLAKEPHNRLASRRGAAEVKQHPFFEGVNWALVRSAQPPYIPDAAAVDH 463
Query: 464 VASK 475
+S+
Sbjct: 464 CSSQ 475
Score = 90.9 bits (192), Expect(2) = 2e-027
Identities = 41/61 (67%), Positives = 49/61 (80%)
Frame = -1 / -2
Query: 274 RGRVGEPQRLVDHVAQRGAVAVPLERRRAMEELVQEDAEGPPVHRAPVALASDDLRREVL 95
R RVGEP+RL D V +RGAV LE R A++ELV+EDAEGPPV A VA+A+DDLRR+VL
Sbjct: 283 RRRVGEPERLRDDVEERGAVPGALEGRGAVQELVEEDAEGPPVDGAAVAVAADDLRRQVL 104
Query: 94 V 92
V
Sbjct: 103 V 101
Score = 59.7 bits (124), Expect(2) = 6e-043
Identities = 26/50 (52%), Positives = 32/50 (64%)
Frame = -1 / -2
Query: 418 PDECPVDPIKERVLLDLSCTPPGGDSLLGVLHQKPTDEVPGDGAHRHRRG 269
PDECPVD +ERVLL L G + ++ +L Q+ DEVPG GA R R G
Sbjct: 418 PDECPVDAFEERVLLHLGRAAAGREPVVRLLGQQAPDEVPGRGADRRRVG 269
Score = 52.4 bits (108), Expect(2) = 2e-027
Identities = 24/41 (58%), Positives = 24/41 (58%)
Frame = -2 / -3
Query: 405 QLTPSKNGCCLISAAPLLVAILFWGSFTRSPRMRSRATVLT 283
QLTPSK GCC SAAP A GS PRMRS A LT
Sbjct: 405 QLTPSKKGCCFTSAAPRRDASRLCGSLASRPRMRSLAAALT 283
>gb|CW223651.1|CW223651 104_659_11203029_148_37186_085 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11203029, DNA
sequence
Length = 726
Score = 149 bits (320), Expect(2) = 4e-064
Identities = 56/64 (87%), Positives = 60/64 (93%)
Frame = +2 / +1
Query: 71 STSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTTPFKGDSNRATLCNVVDQP 250
S SFVGTHEYLAPEI+RGEGHGSAVDWWT GIFLYELLHG+TPFKG NRATLCNV++QP
Sbjct: 1 SMSFVGTHEYLAPEIIRGEGHGSAVDWWTLGIFLYELLHGSTPFKGAGNRATLCNVIEQP 180
Query: 251 LRFP 262
LRFP
Sbjct: 181 LRFP 192
Score = 116 bits (249), Expect(2) = 4e-064
Identities = 48/57 (84%), Positives = 50/57 (87%)
Frame = +2 / +1
Query: 284 VSTVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPDPAD 454
VS+VARDLIRGLLVKDPQKRIA RGA EIKQHPFF+GVNWALVR PPSVPDP D
Sbjct: 220 VSSVARDLIRGLLVKDPQKRIAFTRGATEIKQHPFFEGVNWALVRSMTPPSVPDPVD 390
Score = 116 bits (247), Expect(2) = 7e-041
Identities = 49/65 (75%), Positives = 52/65 (80%)
Frame = -2 / -2
Query: 267 ASGNRSGWSTTLHSVARLLSPLNGVVPWRSSYRKMPKVHQSTALPWPSPLTISGARYSCV 88
+ G RSG S TLHSVARL +PL GV P SS RKMP VHQSTALPWPSP ISGARYSCV
Sbjct: 197 SEGKRSGCSMTLHSVARLPAPLKGVEPCSSS*RKMPSVHQSTALPWPSPRMISGARYSCV 18
Query: 87 PTNDV 73
PTND+
Sbjct: 17 PTNDM 3
Score = 100 bits (212), Expect(2) = 1e-035
Identities = 44/60 (73%), Positives = 52/60 (86%)
Frame = -1 / -1
Query: 262 GEPQRLVDHVAQRGAVAVPLERRRAMEELVQEDAEGPPVHRAPVALASDDLRREVLVRSD 83
GE QRL+D VAQRGAVA LE R A+++LV+EDAE PPVHRA VALA+DDLRR+VLVR+D
Sbjct: 192 GEAQRLLDDVAQRGAVAGALEGRGAVQQLVEEDAERPPVHRAAVALAADDLRRQVLVRAD 13
Score = 72.5 bits (152), Expect(2) = 7e-041
Identities = 35/64 (54%), Positives = 40/64 (62%)
Frame = -1 / -1
Query: 457 QVCRVRDRRWVSIPDECPVDPIKERVLLDLSCTPPGGDSLLGVLHQKPTDEVPGDGAHRH 278
+V RVR RR PD+ PVD +ERVLLDL GD LL VL ++ DEVPGDGA R
Sbjct: 393 EVDRVRHRRRGHAPDQRPVDTFEERVLLDLRGASGEGDPLLWVLDEQAADEVPGDGADRR 214
Query: 277 RRGR 266
GR
Sbjct: 213 APGR 202
Score = 71.2 bits (149), Expect(2) = 1e-035
Identities = 31/41 (75%), Positives = 32/41 (78%)
Frame = -2 / -2
Query: 405 QLTPSKNGCCLISAAPLLVAILFWGSFTRSPRMRSRATVLT 283
QLTPSKNGCCLIS APL+ AI F GS T PRMRS AT LT
Sbjct: 341 QLTPSKNGCCLISVAPLVKAIRFCGSLTSRPRMRSLATELT 219
Score = 65.2 bits (136), Expect(3) = 6e-022
Identities = 26/39 (66%), Positives = 30/39 (76%)
Frame = +1 / +3
Query: 109 GDRQRRGPRERGGLVDLRHLPVRAPPWHDAVQGGQQPRH 225
GD RRGPR+RGGLVD RHLP+RA A+QG +QPRH
Sbjct: 39 GDHPRRGPRQRGGLVDARHLPLRAAARLHALQGRRQPRH 155
Score = 45.5 bits (93), Expect(3) = 6e-022
Identities = 25/55 (45%), Positives = 29/55 (52%)
Frame = +1 / +3
Query: 292 RRPGPHPWASGEGPPEENRHQEGCS*DQAAPVL*WGQLGTRQGCSPTFCP*PCRL 456
RR GPHP + +GP E +R + DQAAPVL QLG Q P P RL
Sbjct: 228 RRQGPHPRPARQGPTEADRLHQRRHGDQAAPVLRRCQLGAGQEHDPAVGAGPGRL 392
Score = 31.8 bits (63), Expect(3) = 6e-022
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +3 / +2
Query: 222 PRCATWSTSRCGSPTRPR 275
PRCAT S+SRC SP R
Sbjct: 152 PRCATSSSSRCASPPTAR 205
>gb|CN134750.1|CN134750 OX1_28_E12.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_28_E12_A002 3', mRNA sequence
Length = 842
Score = 159 bits (342), Expect(2) = 2e-063
Identities = 63/76 (82%), Positives = 67/76 (88%)
Frame = +2 / +1
Query: 41 EFNAEPTDARSTSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTTPFKGDSNR 220
E AEPTDARS SFVGTHEYLAPEI++GEGHGSAVDWWTFGIFLYELL G TPFKG NR
Sbjct: 208 ELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNR 387
Query: 221 ATLCNVVDQPLRFPDA 268
ATL NVV QPLRFP++
Sbjct: 388 ATLFNVVGQPLRFPES 435
Score = 127 bits (273), Expect(2) = 5e-037
Identities = 55/75 (73%), Positives = 62/75 (82%)
Frame = -2 / -1
Query: 264 SGNRSGWSTTLHSVARLLSPLNGVVPWRSSYRKMPKVHQSTALPWPSPLTISGARYSCVP 85
SGNR G TTL SVAR PL GV+P RSS R +PKVHQSTALPWPSPL ISGA+YS VP
Sbjct: 431 SGNRRG*PTTLKSVARFPDPLKGVLPNRSS*RNIPKVHQSTALPWPSPLIISGAKYSWVP 252
Query: 84 TNDVDRASVGSALNS 40
TND++RASVGSA++S
Sbjct: 251 TNDIERASVGSAMSS 207
Score = 104 bits (222), Expect(2) = 2e-063
Identities = 42/60 (70%), Positives = 47/60 (78%)
Frame = +2 / +1
Query: 284 VSTVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPDPADLGR 463
VS ARDLIRGLLVKDPQ R+ +RG EIKQHPFF+GVNWAL+R A PP VP P +L R
Sbjct: 442 VSFSARDLIRGLLVKDPQHRLGYKRGTTEIKQHPFFEGVNWALIRCASPPDVPKPVELDR 621
Score = 47.8 bits (98), Expect(2) = 5e-037
Identities = 22/41 (53%), Positives = 25/41 (60%)
Frame = -2 / -1
Query: 405 QLTPSKNGCCLISAAPLLVAILFWGSFTRSPRMRSRATVLT 283
Q TPSKNGCCLIS P L GS T +P ++S A LT
Sbjct: 563 QFTPSKNGCCLISVVPRL*PRRCCGSLTSNPLIKSLAEKLT 441
>gb|CW353450.1|CW353450 fsbb001f016d09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f016d09, DNA
sequence
Length = 730
Score = 159 bits (342), Expect(2) = 5e-063
Identities = 63/76 (82%), Positives = 67/76 (88%)
Frame = +2 / +3
Query: 41 EFNAEPTDARSTSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTTPFKGDSNR 220
E AEPTDARS SFVGTHEYLAPEI++GEGHGSAVDWWTFGIFLYELL G TPFKG NR
Sbjct: 258 ELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNR 437
Query: 221 ATLCNVVDQPLRFPDA 268
ATL NVV QPLRFP++
Sbjct: 438 ATLFNVVGQPLRFPES 485
Score = 133 bits (286), Expect(2) = 4e-038
Identities = 54/75 (72%), Positives = 62/75 (82%)
Frame = -2 / -1
Query: 264 SGNRSGWSTTLHSVARLLSPLNGVVPWRSSYRKMPKVHQSTALPWPSPLTISGARYSCVP 85
SGN GW TTL SVARL PLNGV+P +SY+ MPKVHQSTALPWPSP ISGA+YS VP
Sbjct: 481 SGNLKGWPTTLKSVARLPEPLNGVLPNNNSYKNMPKVHQSTALPWPSPFIISGAKYSWVP 302
Query: 84 TNDVDRASVGSALNS 40
T D++RASVGSA++S
Sbjct: 301 TKDIERASVGSAMSS 257
Score = 103 bits (219), Expect(2) = 5e-063
Identities = 40/58 (68%), Positives = 47/58 (81%)
Frame = +2 / +3
Query: 284 VSTVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPDPADL 457
VS ARD+IRGLLVKDPQ R+ +RGA EIKQHPFF+GVNWAL+R A PP +P P +L
Sbjct: 492 VSFSARDMIRGLLVKDPQHRLGYKRGATEIKQHPFFEGVNWALIRCASPPDIPKPVEL 665
Score = 45.5 bits (93), Expect(2) = 4e-038
Identities = 21/41 (51%), Positives = 23/41 (56%)
Frame = -2 / -1
Query: 405 QLTPSKNGCCLISAAPLLVAILFWGSFTRSPRMRSRATVLT 283
Q TPSK GCC IS AP L GS T +P + S A LT
Sbjct: 613 QFTPSKKGCCFISVAPRLYPSRCCGSLTSNPLIMSLAEKLT 491
>gb|CF489387.1|CF489387 POL1_57_F11.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_57_F11_A002 3', mRNA sequence
Length = 712
Score = 156 bits (335), Expect(2) = 5e-060
Identities = 61/75 (81%), Positives = 66/75 (88%)
Frame = +2 / +2
Query: 41 EFNAEPTDARSTSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTTPFKGDSNR 220
E AEP+DARS SFVGTHEYLAPEI++GEGHGSAVDWWTFGIFLYELL G TPFKG NR
Sbjct: 2 ELIAEPSDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGTGNR 181
Query: 221 ATLCNVVDQPLRFPD 265
ATL NV+ QPLRFP+
Sbjct: 182 ATLFNVIGQPLRFPE 226
Score = 128 bits (274), Expect(2) = 3e-038
Identities = 55/75 (73%), Positives = 62/75 (82%)
Frame = -2 / -2
Query: 264 SGNRSGWSTTLHSVARLLSPLNGVVPWRSSYRKMPKVHQSTALPWPSPLTISGARYSCVP 85
SG R G TL+SVAR PLNGV P RSSYR +PKVHQSTALP PSPL ISGA+YSCVP
Sbjct: 225 SGKRKG*PMTLNSVARFPVPLNGVFPNRSSYRNIPKVHQSTALP*PSPLIISGAKYSCVP 46
Query: 84 TNDVDRASVGSALNS 40
TND+DRAS+GSA++S
Sbjct: 45 TNDIDRASLGSAISS 1
Score = 96.4 bits (204), Expect(2) = 5e-060
Identities = 39/58 (67%), Positives = 46/58 (79%)
Frame = +2 / +2
Query: 284 VSTVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPDPADL 457
VS ARDLIR LLVK+PQ+R+ +RGA EIKQHPFF+GVNWAL+R A PP VP D+
Sbjct: 236 VSFPARDLIRSLLVKEPQQRLGFKRGATEIKQHPFFEGVNWALIRCASPPEVPRHFDI 409
Score = 51.5 bits (106), Expect(2) = 3e-038
Identities = 23/41 (56%), Positives = 25/41 (60%)
Frame = -2 / -2
Query: 405 QLTPSKNGCCLISAAPLLVAILFWGSFTRSPRMRSRATVLT 283
Q TPSKNGCC IS AP L WGS TR ++S A LT
Sbjct: 357 QFTPSKNGCCFISVAPRLKPNRCWGSLTRRLLIKSLAGKLT 235
>gb|CW365891.1|CW365891 fsbb001f038k04k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f038k04, DNA
sequence
Length = 693
Score = 156 bits (335), Expect(2) = 5e-060
Identities = 61/75 (81%), Positives = 66/75 (88%)
Frame = +2 / -2
Query: 41 EFNAEPTDARSTSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTTPFKGDSNR 220
E AEP+DARS SFVGTHEYLAPEI++GEGHGSAVDWWTFGIFLYELL G TPFKG NR
Sbjct: 551 ELIAEPSDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGTGNR 372
Query: 221 ATLCNVVDQPLRFPD 265
ATL NV+ QPLRFP+
Sbjct: 371 ATLFNVIGQPLRFPE 327
Score = 128 bits (274), Expect(2) = 3e-038
Identities = 55/75 (73%), Positives = 62/75 (82%)
Frame = -2 / +1
Query: 264 SGNRSGWSTTLHSVARLLSPLNGVVPWRSSYRKMPKVHQSTALPWPSPLTISGARYSCVP 85
SG R G TL+SVAR PLNGV P RSSYR +PKVHQSTALP PSPL ISGA+YSCVP
Sbjct: 328 SGKRKG*PMTLNSVARFPVPLNGVFPNRSSYRNIPKVHQSTALP*PSPLIISGAKYSCVP 507
Query: 84 TNDVDRASVGSALNS 40
TND+DRAS+GSA++S
Sbjct: 508 TNDIDRASLGSAISS 552
Score = 96.4 bits (204), Expect(2) = 5e-060
Identities = 39/58 (67%), Positives = 46/58 (79%)
Frame = +2 / -2
Query: 284 VSTVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPDPADL 457
VS ARDLIR LLVK+PQ+R+ +RGA EIKQHPFF+GVNWAL+R A PP VP D+
Sbjct: 317 VSFPARDLIRSLLVKEPQQRLGFKRGATEIKQHPFFEGVNWALIRCASPPEVPRHFDI 144
Score = 51.5 bits (106), Expect(2) = 3e-038
Identities = 23/41 (56%), Positives = 25/41 (60%)
Frame = -2 / +1
Query: 405 QLTPSKNGCCLISAAPLLVAILFWGSFTRSPRMRSRATVLT 283
Q TPSKNGCC IS AP L WGS TR ++S A LT
Sbjct: 196 QFTPSKNGCCFISVAPRLKPNRCWGSLTRRLLIKSLAGKLT 318
>gb|CW365890.1|CW365890 fsbb001f038k04f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f038k04, DNA
sequence
Length = 678
Score = 156 bits (335), Expect(2) = 5e-060
Identities = 61/75 (81%), Positives = 66/75 (88%)
Frame = +2 / +2
Query: 41 EFNAEPTDARSTSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTTPFKGDSNR 220
E AEP+DARS SFVGTHEYLAPEI++GEGHGSAVDWWTFGIFLYELL G TPFKG NR
Sbjct: 140 ELIAEPSDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGTGNR 319
Query: 221 ATLCNVVDQPLRFPD 265
ATL NV+ QPLRFP+
Sbjct: 320 ATLFNVIGQPLRFPE 364
Score = 128 bits (274), Expect(2) = 3e-038
Identities = 55/75 (73%), Positives = 62/75 (82%)
Frame = -2 / -1
Query: 264 SGNRSGWSTTLHSVARLLSPLNGVVPWRSSYRKMPKVHQSTALPWPSPLTISGARYSCVP 85
SG R G TL+SVAR PLNGV P RSSYR +PKVHQSTALP PSPL ISGA+YSCVP
Sbjct: 363 SGKRKG*PMTLNSVARFPVPLNGVFPNRSSYRNIPKVHQSTALP*PSPLIISGAKYSCVP 184
Query: 84 TNDVDRASVGSALNS 40
TND+DRAS+GSA++S
Sbjct: 183 TNDIDRASLGSAISS 139
Score = 96.4 bits (204), Expect(2) = 5e-060
Identities = 39/58 (67%), Positives = 46/58 (79%)
Frame = +2 / +2
Query: 284 VSTVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPDPADL 457
VS ARDLIR LLVK+PQ+R+ +RGA EIKQHPFF+GVNWAL+R A PP VP D+
Sbjct: 374 VSFPARDLIRSLLVKEPQQRLGFKRGATEIKQHPFFEGVNWALIRCASPPEVPRHFDI 547
Score = 51.5 bits (106), Expect(2) = 3e-038
Identities = 23/41 (56%), Positives = 25/41 (60%)
Frame = -2 / -1
Query: 405 QLTPSKNGCCLISAAPLLVAILFWGSFTRSPRMRSRATVLT 283
Q TPSKNGCC IS AP L WGS TR ++S A LT
Sbjct: 495 QFTPSKNGCCFISVAPRLKPNRCWGSLTRRLLIKSLAGKLT 373
>gb|BG103243.1|BG103243 RHIZ2_19_H12.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 691
Score = 150 bits (323), Expect(2) = 2e-058
Identities = 59/76 (77%), Positives = 66/76 (86%)
Frame = +2 / +1
Query: 41 EFNAEPTDARSTSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTTPFKGDSNR 220
E AEPT ARS SFVGTHEYLAPEI++GEGHGSAVDWWTFGIFL+ELL+G TPFKG NR
Sbjct: 40 ELVAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNR 219
Query: 221 ATLCNVVDQPLRFPDA 268
ATL NVV Q L+FP++
Sbjct: 220 ATLFNVVGQQLKFPES 267
Score = 122 bits (261), Expect(2) = 2e-036
Identities = 54/75 (72%), Positives = 61/75 (81%)
Frame = -2 / -3
Query: 264 SGNRSGWSTTLHSVARLLSPLNGVVPWRSSYRKMPKVHQSTALPWPSPLTISGARYSCVP 85
SGN S TTL+ VAR PLNGV+P+ SS+RKMPKVHQSTALP PSPL ISGA+YS VP
Sbjct: 263 SGNFSC*PTTLNRVARFPDPLNGVLPYSSSWRKMPKVHQSTALPCPSPLMISGAKYS*VP 84
Query: 84 TNDVDRASVGSALNS 40
TND+DRA VGSA +S
Sbjct: 83 TNDIDRADVGSATSS 39
Score = 96.8 bits (205), Expect(2) = 2e-058
Identities = 36/53 (67%), Positives = 44/53 (83%)
Frame = +2 / +1
Query: 296 ARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPDPAD 454
+RDLIRGLLVK+PQ R+ +RGA EIKQHPFF+GVNWAL+R + PP VP P +
Sbjct: 286 SRDLIRGLLVKEPQSRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPVE 444
Score = 51.5 bits (106), Expect(2) = 2e-036
Identities = 22/35 (62%), Positives = 22/35 (62%)
Frame = -2 / -3
Query: 405 QLTPSKNGCCLISAAPLLVAILFWGSFTRSPRMRS 301
Q TPSK GCCLIS AP GS TRSP MRS
Sbjct: 395 QFTPSKKGCCLISVAPRFTPRRLCGSLTRSPLMRS 291
>gb|CD209113.1|CD209113 HS1_46_A12.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_46_A12_A012 3', mRNA sequence
Length = 651
Score = 148 bits (317), Expect(2) = 1e-057
Identities = 57/72 (79%), Positives = 64/72 (88%)
Frame = +2 / +1
Query: 53 EPTDARSTSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTTPFKGDSNRATLC 232
EPT ARS SFVGTHEYLAPEI++GEGHGSAVDWWTFGIFL+ELL+G TPFKG NRATL
Sbjct: 1 EPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLF 180
Query: 233 NVVDQPLRFPDA 268
NVV Q L+FP++
Sbjct: 181 NVVGQQLKFPES 216
Score = 116 bits (249), Expect(2) = 7e-035
Identities = 51/70 (72%), Positives = 57/70 (81%)
Frame = -2 / -2
Query: 264 SGNRSGWSTTLHSVARLLSPLNGVVPWRSSYRKMPKVHQSTALPWPSPLTISGARYSCVP 85
SGN S TTL+ VAR PLNGV+P+ SS+RKMPKVHQSTALP PSPL ISGA+YS VP
Sbjct: 212 SGNFSC*PTTLNRVARFPDPLNGVLPYSSSWRKMPKVHQSTALPCPSPLMISGAKYS*VP 33
Query: 84 TNDVDRASVG 55
TND+DRA VG
Sbjct: 32 TNDIDRADVG 3
Score = 96.8 bits (205), Expect(2) = 1e-057
Identities = 36/53 (67%), Positives = 44/53 (83%)
Frame = +2 / +1
Query: 296 ARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPDPAD 454
+RDLIRGLLVK+PQ R+ +RGA EIKQHPFF+GVNWAL+R + PP VP P +
Sbjct: 235 SRDLIRGLLVKEPQSRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPVE 393
Score = 51.5 bits (106), Expect(2) = 7e-035
Identities = 22/35 (62%), Positives = 22/35 (62%)
Frame = -2 / -2
Query: 405 QLTPSKNGCCLISAAPLLVAILFWGSFTRSPRMRS 301
Q TPSK GCCLIS AP GS TRSP MRS
Sbjct: 344 QFTPSKKGCCLISVAPRFTPRRLCGSLTRSPLMRS 240
>gb|CW105163.1|CW105163 104_474_11012772_116_34453_042 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11012772, DNA
sequence
Length = 714
Score = 148 bits (317), Expect(2) = 6e-056
Identities = 56/71 (78%), Positives = 62/71 (87%)
Frame = +2 / +1
Query: 53 EPTDARSTSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTTPFKGDSNRATLC 232
EPTDARS SFVGTHEYLAPEI++G+GHGSAVDWWTFG+FLYELL+G TPF+G N TL
Sbjct: 121 EPTDARSNSFVGTHEYLAPEIIKGDGHGSAVDWWTFGVFLYELLYGKTPFRGPGNDETLA 300
Query: 233 NVVDQPLRFPD 265
NVV Q LRFPD
Sbjct: 301 NVVSQNLRFPD 333
Score = 116 bits (247), Expect(2) = 2e-036
Identities = 48/71 (67%), Positives = 56/71 (78%)
Frame = -2 / -2
Query: 264 SGNRSGWSTTLHSVARLLSPLNGVVPWRSSYRKMPKVHQSTALPWPSPLTISGARYSCVP 85
SGNR TT +V+ PL GV+P++SS RK PKVHQSTALPWPSPL ISGARYSCVP
Sbjct: 332 SGNRRFCETTFANVSSFPGPLKGVLPYKSS*RKTPKVHQSTALPWPSPLMISGARYSCVP 153
Query: 84 TNDVDRASVGS 52
T +++RASVGS
Sbjct: 152 TKELERASVGS 120
Score = 90.9 bits (192), Expect(2) = 6e-056
Identities = 35/50 (70%), Positives = 43/50 (86%)
Frame = +2 / +1
Query: 284 VSTVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPP 433
VS+ A+DLIRGLLVK+P+ R + RGAAEIKQHPFF+G+NWAL+R A PP
Sbjct: 343 VSSNAKDLIRGLLVKEPENRFGSLRGAAEIKQHPFFEGLNWALIRSAAPP 492
Score = 57.4 bits (119), Expect(2) = 2e-036
Identities = 26/41 (63%), Positives = 28/41 (68%)
Frame = -2 / -2
Query: 405 QLTPSKNGCCLISAAPLLVAILFWGSFTRSPRMRSRATVLT 283
Q PSK GCCLISAAPL LF GSFT P +RS A +LT
Sbjct: 464 QFNPSKKGCCLISAAPLNDPNLFSGSFTSKPLIRSLALLLT 342
>gb|CN149831.1|CN149831 WOUND1_65_D05.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_65_D05_A002 3', mRNA sequence
Length = 685
Score = 148 bits (317), Expect(2) = 6e-056
Identities = 56/71 (78%), Positives = 62/71 (87%)
Frame = +2 / +2
Query: 53 EPTDARSTSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTTPFKGDSNRATLC 232
EPTDARS SFVGTHEYLAPEI++G+GHGSAVDWWTFG+FLYELL+G TPF+G N TL
Sbjct: 65 EPTDARSNSFVGTHEYLAPEIIKGDGHGSAVDWWTFGVFLYELLYGKTPFRGPGNDETLA 244
Query: 233 NVVDQPLRFPD 265
NVV Q LRFPD
Sbjct: 245 NVVSQNLRFPD 277
Score = 116 bits (247), Expect(2) = 2e-036
Identities = 48/71 (67%), Positives = 56/71 (78%)
Frame = -2 / -2
Query: 264 SGNRSGWSTTLHSVARLLSPLNGVVPWRSSYRKMPKVHQSTALPWPSPLTISGARYSCVP 85
SGNR TT +V+ PL GV+P++SS RK PKVHQSTALPWPSPL ISGARYSCVP
Sbjct: 276 SGNRRFCETTFANVSSFPGPLKGVLPYKSS*RKTPKVHQSTALPWPSPLMISGARYSCVP 97
Query: 84 TNDVDRASVGS 52
T +++RASVGS
Sbjct: 96 TKELERASVGS 64
Score = 90.9 bits (192), Expect(2) = 6e-056
Identities = 35/50 (70%), Positives = 43/50 (86%)
Frame = +2 / +2
Query: 284 VSTVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPP 433
VS+ A+DLIRGLLVK+P+ R + RGAAEIKQHPFF+G+NWAL+R A PP
Sbjct: 287 VSSNAKDLIRGLLVKEPENRFGSLRGAAEIKQHPFFEGLNWALIRSAAPP 436
Score = 57.4 bits (119), Expect(2) = 2e-036
Identities = 26/41 (63%), Positives = 28/41 (68%)
Frame = -2 / -2
Query: 405 QLTPSKNGCCLISAAPLLVAILFWGSFTRSPRMRSRATVLT 283
Q PSK GCCLISAAPL LF GSFT P +RS A +LT
Sbjct: 408 QFNPSKKGCCLISAAPLNDPNLFSGSFTSKPLIRSLALLLT 286
>gb|CW403691.1|CW403691 fsbb001f095i13k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f095i13, DNA
sequence
Length = 681
Score = 148 bits (317), Expect(2) = 6e-056
Identities = 56/71 (78%), Positives = 62/71 (87%)
Frame = +2 / +3
Query: 53 EPTDARSTSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTTPFKGDSNRATLC 232
EPTDARS SFVGTHEYLAPEI++G+GHGSAVDWWTFG+FLYELL+G TPF+G N TL
Sbjct: 267 EPTDARSNSFVGTHEYLAPEIIKGDGHGSAVDWWTFGVFLYELLYGKTPFRGPGNDETLA 446
Query: 233 NVVDQPLRFPD 265
NVV Q LRFPD
Sbjct: 447 NVVSQNLRFPD 479
Score = 116 bits (247), Expect(2) = 2e-036
Identities = 48/71 (67%), Positives = 56/71 (78%)
Frame = -2 / -3
Query: 264 SGNRSGWSTTLHSVARLLSPLNGVVPWRSSYRKMPKVHQSTALPWPSPLTISGARYSCVP 85
SGNR TT +V+ PL GV+P++SS RK PKVHQSTALPWPSPL ISGARYSCVP
Sbjct: 478 SGNRRFCETTFANVSSFPGPLKGVLPYKSS*RKTPKVHQSTALPWPSPLMISGARYSCVP 299
Query: 84 TNDVDRASVGS 52
T +++RASVGS
Sbjct: 298 TKELERASVGS 266
Score = 90.9 bits (192), Expect(2) = 6e-056
Identities = 35/50 (70%), Positives = 43/50 (86%)
Frame = +2 / +3
Query: 284 VSTVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPP 433
VS+ A+DLIRGLLVK+P+ R + RGAAEIKQHPFF+G+NWAL+R A PP
Sbjct: 489 VSSNAKDLIRGLLVKEPENRFGSLRGAAEIKQHPFFEGLNWALIRSAAPP 638
Score = 57.4 bits (119), Expect(2) = 2e-036
Identities = 26/41 (63%), Positives = 28/41 (68%)
Frame = -2 / -3
Query: 405 QLTPSKNGCCLISAAPLLVAILFWGSFTRSPRMRSRATVLT 283
Q PSK GCCLISAAPL LF GSFT P +RS A +LT
Sbjct: 610 QFNPSKKGCCLISAAPLNDPNLFSGSFTSKPLIRSLALLLT 488
>gb|CX606300.1|CX606300 ANR1_2_F08.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_2_F08_A002 3', mRNA sequence
Length = 593
Score = 149 bits (319), Expect(2) = 1e-055
Identities = 59/75 (78%), Positives = 64/75 (85%)
Frame = +2 / +2
Query: 41 EFNAEPTDARSTSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTTPFKGDSNR 220
E AEP+DARS SFVGTHEYLAPEI++GEGHGSAVDWWTFGIFL ELL G TPFKG NR
Sbjct: 2 ELIAEPSDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFL*ELLFGKTPFKGTGNR 181
Query: 221 ATLCNVVDQPLRFPD 265
ATL NV+ PLRFP+
Sbjct: 182 ATLFNVIGHPLRFPE 226
Score = 128 bits (274), Expect(2) = 4e-036
Identities = 55/75 (73%), Positives = 62/75 (82%)
Frame = -2 / -3
Query: 264 SGNRSGWSTTLHSVARLLSPLNGVVPWRSSYRKMPKVHQSTALPWPSPLTISGARYSCVP 85
SG R G TL+SVAR PLNGV P RSSYR +PKVHQSTALP PSPL ISGA+YSCVP
Sbjct: 225 SGKRKG*PMTLNSVARFPVPLNGVFPNRSSYRNIPKVHQSTALP*PSPLIISGAKYSCVP 46
Query: 84 TNDVDRASVGSALNS 40
TND+DRAS+GSA++S
Sbjct: 45 TNDIDRASLGSAISS 1
Score = 89.0 bits (188), Expect(2) = 1e-055
Identities = 37/58 (63%), Positives = 44/58 (75%)
Frame = +2 / +2
Query: 284 VSTVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPDPADL 457
VS ARDLIR LLVK+PQ+R+ +RG EIKQ PFF+GVNWAL+R A PP VP D+
Sbjct: 236 VSFPARDLIRSLLVKEPQQRLGFKRGPPEIKQPPFFEGVNWALIRCASPPEVPRHFDI 409
Score = 44.1 bits (90), Expect(2) = 4e-036
Identities = 21/41 (51%), Positives = 23/41 (56%)
Frame = -2 / -3
Query: 405 QLTPSKNGCCLISAAPLLVAILFWGSFTRSPRMRSRATVLT 283
Q TPSKNG C IS P L WGS TR ++S A LT
Sbjct: 357 QFTPSKNGGCFISGGPRLKPNRCWGSLTRRLLIKSLAGKLT 235
>gb|CW176244.1|CW176244 104_589_11158384_148_36680_062 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11158384, DNA
sequence
Length = 724
Score = 144 bits (308), Expect(2) = 3e-054
Identities = 54/71 (76%), Positives = 61/71 (85%)
Frame = +2 / -1
Query: 53 EPTDARSTSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTTPFKGDSNRATLC 232
EPT+ARS SFVGTHEYLAPEI+RG+GHGS+VDWWT GIFLYELL+G TPFKG N TL
Sbjct: 616 EPTEARSNSFVGTHEYLAPEIIRGDGHGSSVDWWTLGIFLYELLYGKTPFKGPGNEETLS 437
Query: 233 NVVDQPLRFPD 265
NV+ Q L+FPD
Sbjct: 436 NVISQGLKFPD 404
Score = 101 bits (216), Expect(2) = 1e-029
Identities = 45/71 (63%), Positives = 51/71 (71%)
Frame = -2 / +3
Query: 264 SGNRSGWSTTLHSVARLLSPLNGVVPWRSSYRKMPKVHQSTALPWPSPLTISGARYSCVP 85
SGN T SV+ L PLNGV+P +S RK+P+VHQST LPWPSP ISGARYS VP
Sbjct: 405 SGNFKPCEITFESVSSLPGPLNGVLP*SNS*RKIPRVHQSTELPWPSPRMISGARYSWVP 584
Query: 84 TNDVDRASVGS 52
TN+ D ASVGS
Sbjct: 585 TNEFDLASVGS 617
Score = 89.5 bits (189), Expect(2) = 3e-054
Identities = 36/57 (63%), Positives = 44/57 (77%)
Frame = +2 / -1
Query: 284 VSTVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPDPAD 454
VS ARDLIRGLLVK+P+ R+ + RGAAEIK+HPFF+G+NWAL+R PP P D
Sbjct: 394 VSFHARDLIRGLLVKEPECRLGSSRGAAEIKRHPFFEGLNWALIRWTAPPETPKNID 224
Score = 49.2 bits (101), Expect(2) = 1e-029
Identities = 25/41 (60%), Positives = 26/41 (63%)
Frame = -2 / +3
Query: 405 QLTPSKNGCCLISAAPLLVAILFWGSFTRSPRMRSRATVLT 283
Q PSK GC LISAAPL GSFT SP +RSRA LT
Sbjct: 273 QFRPSKKGCRLISAAPLDEPSRHSGSFTSSPLIRSRAWKLT 395
>gb|CF489555.1|CF489555 POL1_58_F10.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_58_F10_A002 3', mRNA sequence
Length = 692
Score = 134 bits (287), Expect(2) = 5e-054
Identities = 53/68 (77%), Positives = 57/68 (83%)
Frame = +2 / +2
Query: 62 DARSTSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTTPFKGDSNRATLCNVV 241
DARS SFVGTHEYLAPEI++GEGHGS VDW FGIFLYELL G TPFKG RATL NV+
Sbjct: 2 DARSMSFVGTHEYLAPEIIKGEGHGSVVDWCPFGIFLYELLFGKTPFKGTGTRATLFNVI 181
Query: 242 DQPLRFPD 265
QPLRFP+
Sbjct: 182 GQPLRFPE 205
Score = 113 bits (242), Expect(2) = 2e-033
Identities = 49/68 (72%), Positives = 54/68 (79%)
Frame = -2 / -3
Query: 264 SGNRSGWSTTLHSVARLLSPLNGVVPWRSSYRKMPKVHQSTALPWPSPLTISGARYSCVP 85
SG R G TL+SVAR+ PLNGV P RSSYR +PK HQST LP PSPL ISGA+YSCVP
Sbjct: 204 SGKRKG*PMTLNSVARVPVPLNGVFPNRSSYRNIPKGHQSTTLP*PSPLIISGAKYSCVP 25
Query: 84 TNDVDRAS 61
TND+DRAS
Sbjct: 24 TNDIDRAS 1
Score = 98.2 bits (208), Expect(2) = 5e-054
Identities = 40/58 (68%), Positives = 46/58 (79%)
Frame = +2 / +2
Query: 284 VSTVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPDPADL 457
VS ARDLIR LLVKDPQ+R+ +RGA EIKQHPFF+GVNWAL+R A PP VP D+
Sbjct: 215 VSFPARDLIRSLLVKDPQQRLGFKRGATEIKQHPFFEGVNWALIRCASPPEVPRHFDI 388
Score = 50.1 bits (103), Expect(2) = 2e-033
Identities = 22/41 (53%), Positives = 25/41 (60%)
Frame = -2 / -3
Query: 405 QLTPSKNGCCLISAAPLLVAILFWGSFTRSPRMRSRATVLT 283
Q TPSKNGCC IS AP L WGS T+ ++S A LT
Sbjct: 336 QFTPSKNGCCFISVAPRLKPNRCWGSLTKRLLIKSLAGKLT 214
>gb|CW073807.1|CW073807 104_340_10781623_116_31470_103 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10781623, DNA
sequence
Length = 596
Score = 124 bits (265), Expect(2) = 7e-054
Identities = 47/56 (83%), Positives = 50/56 (89%)
Frame = +2 / -3
Query: 101 LAPEIVRGEGHGSAVDWWTFGIFLYELLHGTTPFKGDSNRATLCNVVDQPLRFPDA 268
LAPEI+RG+GHG AVDWWTFGIFLYEL+HG TPFKG NRATL NVV QPLRFPDA
Sbjct: 594 LAPEIIRGDGHGRAVDWWTFGIFLYELMHGATPFKGSGNRATLFNVVAQPLRFPDA 427
Score = 107 bits (229), Expect(2) = 7e-054
Identities = 42/64 (65%), Positives = 51/64 (79%)
Frame = +2 / -3
Query: 284 VSTVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPDPADLGR 463
VS ARDLIRGLL K+P R+A+RRGAAE+KQHPFF+GVNWALVR A PP +PD A +
Sbjct: 420 VSAAARDLIRGLLAKEPHNRLASRRGAAEVKQHPFFEGVNWALVRSAQPPYIPDAAAVDH 241
Query: 464 VASK 475
+S+
Sbjct: 240 CSSQ 229
Score = 94.5 bits (200), Expect(2) = 1e-030
Identities = 42/56 (75%), Positives = 43/56 (76%)
Frame = -2 / +2
Query: 267 ASGNRSGWSTTLHSVARLLSPLNGVVPWRSSYRKMPKVHQSTALPWPSPLTISGAR 100
ASGN SG +TTL SVAR PL GV P SS RKMPKVHQSTALPWPSP ISGAR
Sbjct: 428 ASGNLSGCATTLKSVARFPEPLKGVAPCMSS*RKMPKVHQSTALPWPSPRMISGAR 595
Score = 83.1 bits (175), Expect(2) = 5e-025
Identities = 37/58 (63%), Positives = 45/58 (77%)
Frame = -1 / +1
Query: 274 RGRVGEPQRLVDHVAQRGAVAVPLERRRAMEELVQEDAEGPPVHRAPVALASDDLRRE 101
R RVGEP+RL D V +RGAV LE R A+ ELV+EDAEGPPV + VA+A+DDLRR+
Sbjct: 421 RRRVGEPERLRDDVEERGAVPGALEGRGAVHELVEEDAEGPPVDGSAVAVAADDLRRQ 594
Score = 59.7 bits (124), Expect(2) = 1e-030
Identities = 26/50 (52%), Positives = 32/50 (64%)
Frame = -1 / +1
Query: 418 PDECPVDPIKERVLLDLSCTPPGGDSLLGVLHQKPTDEVPGDGAHRHRRG 269
PDECPVD +ERVLL L G + ++ +L Q+ DEVPG GA R R G
Sbjct: 286 PDECPVDAFEERVLLHLGRAAAGREPVVRLLGQQAPDEVPGRGADRRRVG 435
Score = 52.4 bits (108), Expect(2) = 5e-025
Identities = 24/41 (58%), Positives = 24/41 (58%)
Frame = -2 / +2
Query: 405 QLTPSKNGCCLISAAPLLVAILFWGSFTRSPRMRSRATVLT 283
QLTPSK GCC SAAP A GS PRMRS A LT
Sbjct: 299 QLTPSKKGCCFTSAAPRRDASRLCGSLASRPRMRSLAAALT 421
>gb|CN147521.1|CN147521 WOUND1_50_F12.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_50_F12_A002 3', mRNA sequence
Length = 763
Score = 141 bits (303), Expect(2) = 6e-053
Identities = 55/71 (77%), Positives = 61/71 (85%)
Frame = +2 / +3
Query: 53 EPTDARSTSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTTPFKGDSNRATLC 232
EPTDARS SFVGTHEYLAPEI++G+GHGSAVD WTFG+FLYELL+G TPF+G N TL
Sbjct: 60 EPTDARSNSFVGTHEYLAPEIIKGDGHGSAVDRWTFGVFLYELLYGKTPFRGPGNDETLA 239
Query: 233 NVVDQPLRFPD 265
NVV Q LRFPD
Sbjct: 240 NVVSQNLRFPD 272
Score = 114 bits (243), Expect(2) = 3e-035
Identities = 47/71 (66%), Positives = 56/71 (78%)
Frame = -2 / -1
Query: 264 SGNRSGWSTTLHSVARLLSPLNGVVPWRSSYRKMPKVHQSTALPWPSPLTISGARYSCVP 85
SGNR TT +V+ PL GV+P++SS RK PKVH+STALPWPSPL ISGARYSCVP
Sbjct: 271 SGNRRFCETTFANVSSFPGPLKGVLPYKSS*RKTPKVHRSTALPWPSPLMISGARYSCVP 92
Query: 84 TNDVDRASVGS 52
T +++RASVGS
Sbjct: 91 TKELERASVGS 59
Score = 87.2 bits (184), Expect(2) = 6e-053
Identities = 33/50 (66%), Positives = 41/50 (82%)
Frame = +2 / +3
Query: 284 VSTVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPP 433
VS+ A+DLIRGLLVK+P+ R + RG AEIKQHPFF+G+NWAL+R PP
Sbjct: 282 VSSNAKDLIRGLLVKEPENRFGSLRGVAEIKQHPFFEGLNWALIRSGAPP 431
Score = 55.6 bits (115), Expect(2) = 3e-035
Identities = 25/41 (60%), Positives = 27/41 (65%)
Frame = -2 / -1
Query: 405 QLTPSKNGCCLISAAPLLVAILFWGSFTRSPRMRSRATVLT 283
Q PSK GCCLISA PL LF GSFT P +RS A +LT
Sbjct: 403 QFNPSKKGCCLISATPLNDPNLFSGSFTSKPLIRSLALLLT 281
>gb|CW308233.1|CW308233 104_796_11468560_116_35731_054 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11468560, DNA
sequence
Length = 613
Score = 138 bits (297), Expect(2) = 3e-051
Identities = 55/85 (64%), Positives = 66/85 (77%)
Frame = +2 / -3
Query: 8 DSSIKDGSLQLEFNAEPTDARSTSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLH 187
+SS +G L+LEF AEP + RS SFVGTHEYLAPEIV GEGHGS+VDWWT G+F++ELL+
Sbjct: 602 NSSGGNGGLELEFVAEPVELRSMSFVGTHEYLAPEIVSGEGHGSSVDWWTLGVFVFELLY 423
Query: 188 GTTPFKGDSNRATLCNVVDQPLRFP 262
G TPFKG TL N+V + L FP
Sbjct: 422 GVTPFKGYDIEMTLANIVARALEFP 348
Score = 116 bits (247), Expect(2) = 2e-032
Identities = 53/79 (67%), Positives = 57/79 (72%)
Frame = -2 / +1
Query: 261 GNRSGWSTTLHSVARLLSPLNGVVPWRSSYRKMPKVHQSTALPWPSPLTISGARYSCVPT 82
GN S +T L SV + PLNGV P RSS K P VHQST LP PSP TISGARYSCVPT
Sbjct: 349 GNSSARATMLASVISMS*PLNGVTP*RSSKTKTPSVHQSTELPCPSPDTISGARYSCVPT 528
Query: 81 NDVDRASVGSALNSSWSDP 25
ND+DR+S GSA NSS S P
Sbjct: 529 NDMDRSSTGSATNSSSSPP 585
Score = 84.5 bits (178), Expect(2) = 3e-051
Identities = 34/55 (61%), Positives = 40/55 (72%)
Frame = +2 / -3
Query: 284 VSTVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPDP 448
VS+ ARDL+ LL KDP +R+ GAA IK+HPFF GVNWAL+R A PP VP P
Sbjct: 335 VSSAARDLVTALLAKDPARRLGATVGAAAIKRHPFFGGVNWALLRCATPPYVPPP 171
Score = 44.1 bits (90), Expect(2) = 2e-032
Identities = 20/44 (45%), Positives = 26/44 (59%)
Frame = -1 / +3
Query: 415 DECPVDPIKERVLLDLSCTPPGGDSLLGVLHQKPTDEVPGDGAH 284
++ PVD KERV LD G ++ GVL ++ DEVPG G H
Sbjct: 204 EQGPVDAAKERVALDRRGADGGAEAAGGVLGEERGDEVPGGGRH 335
>gb|CW311717.1|CW311717 104_801_11470377_116_36277_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11470377, DNA
sequence
Length = 698
Score = 139 bits (298), Expect(2) = 3e-049
Identities = 50/85 (58%), Positives = 64/85 (75%)
Frame = +2 / -3
Query: 8 DSSIKDGSLQLEFNAEPTDARSTSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLH 187
D + + G E EP ARS SFVGTHEYLAPE++ G+GHGSAVDWWT G+F+YE+++
Sbjct: 636 DRTSEPGDSNPELVVEPVSARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFMYEMMY 457
Query: 188 GTTPFKGDSNRATLCNVVDQPLRFP 262
G TPFKG++N TL N++ QPL FP
Sbjct: 456 GRTPFKGENNEKTLVNIIKQPLAFP 382
Score = 107 bits (228), Expect(2) = 6e-025
Identities = 47/79 (59%), Positives = 50/79 (63%)
Frame = -2 / +2
Query: 261 GNRSGWSTTLHSVARLLSPLNGVVPWRSSYRKMPKVHQSTALPWPSPLTISGARYSCVPT 82
G SG L SV L SPLNGV P+ SY P VHQSTALPWP P SGARYSCVPT
Sbjct: 383 GKASGCLMMLTSVFSLFSPLNGVRPYIISYMNTPSVHQSTALPWPCPEITSGARYSCVPT 562
Query: 81 NDVDRASVGSALNSSWSDP 25
ND+DRA GS +S P
Sbjct: 563 NDLDRAETGSTTSSGLLSP 619
Score = 77.1 bits (162), Expect(2) = 3e-049
Identities = 29/51 (56%), Positives = 38/51 (74%)
Frame = +2 / -3
Query: 296 ARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPDP 448
A+DL+ LL K+P+KR+ + G+AE+K+H FF GVNWALVR PP VP P
Sbjct: 336 AQDLMTQLLAKNPKKRLGSCTGSAEVKRHDFFKGVNWALVRSVRPPEVPKP 184
Score = 27.6 bits (54), Expect(2) = 6e-025
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -1 / +1
Query: 418 PDECPVDPIKERVLLDLSCTPPGGDSLLGVLHQK 317
PDE PV ++E V L L LLGVL Q+
Sbjct: 214 PDERPVHALEEVVPLHLRRPRAAAQPLLGVLGQE 315
>gb|BF422042.1|BF422042 FM1_12_C02.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 591
Score = 125 bits (267), Expect(2) = 4e-049
Identities = 46/60 (76%), Positives = 52/60 (86%)
Frame = +2 / +3
Query: 86 GTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTTPFKGDSNRATLCNVVDQPLRFPD 265
GTHEYLAPEI++G+GHGSAVDWWTFG+FLYELL+G TPF+G N TL NVV Q LRFPD
Sbjct: 3 GTHEYLAPEIIKGDGHGSAVDWWTFGVFLYELLYGKTPFRGPGNDETLANVVSQNLRFPD 182
Score = 99.1 bits (210), Expect(2) = 3e-031
Identities = 41/60 (68%), Positives = 46/60 (76%)
Frame = -2 / -3
Query: 264 SGNRSGWSTTLHSVARLLSPLNGVVPWRSSYRKMPKVHQSTALPWPSPLTISGARYSCVP 85
SGNR TT +V+ PL GV+P++SS RK PKVHQSTALPWPSPL ISGARYSCVP
Sbjct: 181 SGNRRFCETTFANVSSFPGPLKGVLPYKSS*RKTPKVHQSTALPWPSPLMISGARYSCVP 2
Score = 90.9 bits (192), Expect(2) = 4e-049
Identities = 35/50 (70%), Positives = 43/50 (86%)
Frame = +2 / +3
Query: 284 VSTVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPP 433
VS+ A+DLIRGLLVK+P+ R + RGAAEIKQHPFF+G+NWAL+R A PP
Sbjct: 192 VSSNAKDLIRGLLVKEPENRFGSLRGAAEIKQHPFFEGLNWALIRSAAPP 341
Score = 57.0 bits (118), Expect(2) = 3e-031
Identities = 26/41 (63%), Positives = 28/41 (68%)
Frame = -2 / -3
Query: 405 QLTPSKNGCCLISAAPLLVAILFWGSFTRSPRMRSRATVLT 283
Q PSK GCCLISAAPL LF GSFT P +RS A +LT
Sbjct: 313 QFKPSKKGCCLISAAPLNDPNLFSGSFTSKPLIRSLALLLT 191
>gb|BE597334.1|BE597334 PI1_72_B09.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 614
Score = 111 bits (236), Expect(2) = 1e-048
Identities = 42/52 (80%), Positives = 46/52 (88%)
Frame = +2 / +1
Query: 113 IVRGEGHGSAVDWWTFGIFLYELLHGTTPFKGDSNRATLCNVVDQPLRFPDA 268
I++GEGHGSAVDWWTFGIFLYELL G TPFKG NRATL NVV QPLRFP++
Sbjct: 1 IIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPES 156
Score = 103 bits (219), Expect(2) = 1e-048
Identities = 40/58 (68%), Positives = 47/58 (81%)
Frame = +2 / +1
Query: 284 VSTVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPDPADL 457
VS ARD+IRGLLVKDPQ R+ +RGA EIKQHPFF+GVNWAL+R A PP +P P +L
Sbjct: 163 VSFSARDMIRGLLVKDPQHRLGYKRGATEIKQHPFFEGVNWALIRCASPPDIPKPVEL 336
Score = 91.3 bits (193), Expect(2) = 2e-025
Identities = 36/48 (75%), Positives = 39/48 (81%)
Frame = -2 / -1
Query: 264 SGNRSGWSTTLHSVARLLSPLNGVVPWRSSYRKMPKVHQSTALPWPSP 121
SGN GW TTL SVARL PLNGV+P +SY+ MPKVHQSTALPWPSP
Sbjct: 152 SGNLKGWPTTLKSVARLPEPLNGVLPNNNSYKNMPKVHQSTALPWPSP 9
Score = 45.5 bits (93), Expect(2) = 2e-025
Identities = 21/41 (51%), Positives = 23/41 (56%)
Frame = -2 / -1
Query: 405 QLTPSKNGCCLISAAPLLVAILFWGSFTRSPRMRSRATVLT 283
Q TPSK GCC IS AP L GS T +P + S A LT
Sbjct: 284 QFTPSKKGCCFISVAPRLYPSRCCGSLTSNPLIMSLAEKLT 162
>gb|AW565318.1|AW565318 LG1_342_A06.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 698
Score = 109 bits (232), Expect(2) = 5e-048
Identities = 41/51 (80%), Positives = 45/51 (88%)
Frame = +2 / +3
Query: 116 VRGEGHGSAVDWWTFGIFLYELLHGTTPFKGDSNRATLCNVVDQPLRFPDA 268
++GEGHGSAVDWWTFGIFLYELL G TPFKG NRATL NVV QPLRFP++
Sbjct: 3 IKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPES 155
Score = 103 bits (219), Expect(2) = 5e-048
Identities = 40/58 (68%), Positives = 47/58 (81%)
Frame = +2 / +3
Query: 284 VSTVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPDPADL 457
VS ARD+IRGLLVKDPQ R+ +RGA EIKQHPFF+GVNWAL+R A PP +P P +L
Sbjct: 162 VSFSARDMIRGLLVKDPQHRLGYKRGATEIKQHPFFEGVNWALIRCASPPDIPKPVEL 335
Score = 91.3 bits (193), Expect(2) = 2e-025
Identities = 36/48 (75%), Positives = 39/48 (81%)
Frame = -2 / -2
Query: 264 SGNRSGWSTTLHSVARLLSPLNGVVPWRSSYRKMPKVHQSTALPWPSP 121
SGN GW TTL SVARL PLNGV+P +SY+ MPKVHQSTALPWPSP
Sbjct: 151 SGNLKGWPTTLKSVARLPEPLNGVLPNNNSYKNMPKVHQSTALPWPSP 8
Score = 45.5 bits (93), Expect(2) = 2e-025
Identities = 21/41 (51%), Positives = 23/41 (56%)
Frame = -2 / -2
Query: 405 QLTPSKNGCCLISAAPLLVAILFWGSFTRSPRMRSRATVLT 283
Q TPSK GCC IS AP L GS T +P + S A LT
Sbjct: 283 QFTPSKKGCCFISVAPRLYPSRCCGSLTSNPLIMSLAEKLT 161
>gb|CW088288.1|CW088288 104_433_10948097_114_32572_075 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10948097, DNA
sequence
Length = 640
Score = 122 bits (262), Expect(2) = 1e-044
Identities = 46/80 (57%), Positives = 58/80 (72%)
Frame = +2 / -1
Query: 23 DGSLQLEFNAEPTDARSTSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTTPF 202
D + EF AEPT A S VGTHEYLAPE+V G GHG+ VDWW FG+FLYEL++G TPF
Sbjct: 496 DAKERFEFVAEPTAASSKDCVGTHEYLAPELVSGSGHGNGVDWWAFGVFLYELVYGRTPF 317
Query: 203 KGDSNRATLCNVVDQPLRFP 262
KG + ATL N++ + + +P
Sbjct: 316 KGHTKEATLKNILSKQVTYP 257
Score = 98.2 bits (208), Expect(2) = 2e-026
Identities = 45/73 (61%), Positives = 51/73 (69%)
Frame = -2 / +3
Query: 225 VARLLSPLNGVVPWRSSYRKMPKVHQSTALPWPSPLTISGARYSCVPTNDVDRASVGSAL 46
VA L+ PL GV P SS RK PK HQST LPWP PLT SGARYSCVPT ++ A+VGSA
Sbjct: 294 VASLVWPLKGVRP*TSS*RKTPKAHQSTPLPWPLPLTSSGARYSCVPTQSLELAAVGSAT 473
Query: 45 NSSWSDPSLMLES 7
NS+ S S+ S
Sbjct: 474 NSNRSLASISSSS 512
Score = 78.0 bits (164), Expect(2) = 1e-044
Identities = 30/49 (61%), Positives = 38/49 (77%)
Frame = +2 / -1
Query: 299 RDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPD 445
RDL+ LL +DP++R+ RGAAEIK+HPFF GV+WAL+R PP VPD
Sbjct: 223 RDLVGRLLERDPRRRMGATRGAAEIKRHPFFAGVDWALIRCVAPPVVPD 77
Score = 41.8 bits (85), Expect(2) = 2e-026
Identities = 21/49 (42%), Positives = 25/49 (51%)
Frame = -1 / +2
Query: 445 VRDRRWVSIPDECPVDPIKERVLLDLSCTPPGGDSLLGVLHQKPTDEVP 299
VR RW P E PV +ERV LDL G + V ++P DEVP
Sbjct: 77 VRHHRWRHAPYEGPVHAGEERVALDLGGAARGAHAAARVTLEQPPDEVP 223
>gb|CW088290.1|CW088290 104_433_10948097_250_32620_075 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10948097, DNA
sequence
Length = 612
Score = 122 bits (262), Expect(2) = 1e-044
Identities = 46/80 (57%), Positives = 58/80 (72%)
Frame = +2 / -3
Query: 23 DGSLQLEFNAEPTDARSTSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTTPF 202
D + EF AEPT A S VGTHEYLAPE+V G GHG+ VDWW FG+FLYEL++G TPF
Sbjct: 469 DAKERFEFVAEPTAASSKDCVGTHEYLAPELVSGSGHGNGVDWWAFGVFLYELVYGRTPF 290
Query: 203 KGDSNRATLCNVVDQPLRFP 262
KG + ATL N++ + + +P
Sbjct: 289 KGHTKEATLKNILSKQVTYP 230
Score = 98.2 bits (208), Expect(2) = 2e-026
Identities = 45/73 (61%), Positives = 51/73 (69%)
Frame = -2 / +3
Query: 225 VARLLSPLNGVVPWRSSYRKMPKVHQSTALPWPSPLTISGARYSCVPTNDVDRASVGSAL 46
VA L+ PL GV P SS RK PK HQST LPWP PLT SGARYSCVPT ++ A+VGSA
Sbjct: 267 VASLVWPLKGVRP*TSS*RKTPKAHQSTPLPWPLPLTSSGARYSCVPTQSLELAAVGSAT 446
Query: 45 NSSWSDPSLMLES 7
NS+ S S+ S
Sbjct: 447 NSNRSLASISSSS 485
Score = 78.0 bits (164), Expect(2) = 1e-044
Identities = 30/49 (61%), Positives = 38/49 (77%)
Frame = +2 / -3
Query: 299 RDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPD 445
RDL+ LL +DP++R+ RGAAEIK+HPFF GV+WAL+R PP VPD
Sbjct: 196 RDLVGRLLERDPRRRMGATRGAAEIKRHPFFAGVDWALIRCVAPPVVPD 50
Score = 41.8 bits (85), Expect(2) = 2e-026
Identities = 21/49 (42%), Positives = 25/49 (51%)
Frame = -1 / +2
Query: 445 VRDRRWVSIPDECPVDPIKERVLLDLSCTPPGGDSLLGVLHQKPTDEVP 299
VR RW P E PV +ERV LDL G + V ++P DEVP
Sbjct: 50 VRHHRWRHAPYEGPVHAGEERVALDLGGAARGAHAAARVTLEQPPDEVP 196
>gb|BF705043.1|BF705043 RHIZ2_1_F10.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 639
Score = 103 bits (219), Expect(2) = 2e-042
Identities = 40/58 (68%), Positives = 47/58 (81%)
Frame = +2 / +1
Query: 284 VSTVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPDPADL 457
VS ARD+IRGLLVKDPQ R+ +RGA EIKQHPFF+GVNWAL+R A PP +P P +L
Sbjct: 136 VSFSARDMIRGLLVKDPQHRLGYKRGATEIKQHPFFEGVNWALIRCASPPDIPKPVEL 309
Score = 90.9 bits (192), Expect(2) = 2e-042
Identities = 35/43 (81%), Positives = 37/43 (86%)
Frame = +2 / +1
Query: 140 AVDWWTFGIFLYELLHGTTPFKGDSNRATLCNVVDQPLRFPDA 268
AVDWWTFGIFLYELL G TPFKG NRATL NVV QPLRFP++
Sbjct: 1 AVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPES 129
>gb|CW280288.1|CW280288 104_755_11407540_148_35446_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11407540, DNA
sequence
Length = 652
Score = 165 bits (355), Expect = 5e-040
Identities = 65/75 (86%), Positives = 67/75 (89%)
Frame = +2 / +3
Query: 38 LEFNAEPTDARSTSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTTPFKGDSN 217
LEF AEPT ARS SFVGTHEYLAPEI+RG+GHGSAVDWWTFGIFLYELLHG TPFKG N
Sbjct: 423 LEFTAEPTSARSMSFVGTHEYLAPEIIRGDGHGSAVDWWTFGIFLYELLHGATPFKGSGN 602
Query: 218 RATLCNVVDQPLRFP 262
RATL NVV QPLRFP
Sbjct: 603 RATLFNVVAQPLRFP 647
Score = 132 bits (282), Expect = 6e-030
Identities = 58/75 (77%), Positives = 61/75 (81%)
Frame = -2 / -1
Query: 261 GNRSGWSTTLHSVARLLSPLNGVVPWRSSYRKMPKVHQSTALPWPSPLTISGARYSCVPT 82
GN SG +TTL SVAR PL GV P RSS RKMPKVHQSTALPWPSP ISGARYS VPT
Sbjct: 646 GNLSGCATTLKSVARFPEPLKGVAPCRSS*RKMPKVHQSTALPWPSPRMISGARYSWVPT 467
Query: 81 NDVDRASVGSALNSS 37
ND+DRA VGSA+NSS
Sbjct: 466 NDMDRALVGSAVNSS 422
>gb|CW403690.1|CW403690 fsbb001f095i13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f095i13, DNA
sequence
Length = 615
Score = 90.9 bits (192), Expect(3) = 4e-039
Identities = 35/50 (70%), Positives = 43/50 (86%)
Frame = +2 / -1
Query: 284 VSTVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPP 433
VS+ A+DLIRGLLVK+P+ R + RGAAEIKQHPFF+G+NWAL+R A PP
Sbjct: 447 VSSNAKDLIRGLLVKEPENRFGSLRGAAEIKQHPFFEGLNWALIRSAAPP 298
Score = 64.3 bits (134), Expect(3) = 4e-039
Identities = 25/36 (69%), Positives = 28/36 (77%)
Frame = +2 / -1
Query: 158 FGIFLYELLHGTTPFKGDSNRATLCNVVDQPLRFPD 265
FG+FLYELL+G TPF+G N TL NVV Q LRFPD
Sbjct: 564 FGVFLYELLYGKTPFRGPGNDETLANVVSQNLRFPD 457
Score = 45.5 bits (93), Expect(3) = 4e-039
Identities = 14/17 (82%), Positives = 17/17 (100%)
Frame = +2 / -3
Query: 110 EIVRGEGHGSAVDWWTF 160
EI++G+GHGSAVDWWTF
Sbjct: 613 EIIKGDGHGSAVDWWTF 563
>gb|CD462204.1|CD462204 SA1_40_B09.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_40_B09_A002 3', mRNA sequence
Length = 674
Score = 103 bits (220), Expect(2) = 1e-038
Identities = 37/64 (57%), Positives = 48/64 (75%)
Frame = +2 / +3
Query: 71 STSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTTPFKGDSNRATLCNVVDQP 250
S SFVGT EY+APEI+ G GH SAVDWW GI LYE+L+G TPF+G + + T N++ +
Sbjct: 81 SNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQRTFANILHKD 260
Query: 251 LRFP 262
+RFP
Sbjct: 261 IRFP 272
Score = 77.1 bits (162), Expect(2) = 1e-038
Identities = 32/57 (56%), Positives = 38/57 (66%)
Frame = +2 / +3
Query: 278 VPVSTVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPDP 448
+ VS AR LI LL +DP R+ + GA EIKQHPFF G+NWALVR A PP + P
Sbjct: 279 IQVSLAARQLIYRLLHRDPANRLGSYEGAIEIKQHPFFRGINWALVRAATPPELEAP 449
>gb|BM329541.1|BM329541 PIC1_39_D08.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 657
Score = 103 bits (220), Expect(2) = 1e-038
Identities = 37/64 (57%), Positives = 48/64 (75%)
Frame = +2 / +3
Query: 71 STSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTTPFKGDSNRATLCNVVDQP 250
S SFVGT EY+APEI+ G GH SAVDWW GI LYE+L+G TPF+G + + T N++ +
Sbjct: 45 SNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQRTFANILHKD 224
Query: 251 LRFP 262
+RFP
Sbjct: 225 IRFP 236
Score = 77.1 bits (162), Expect(2) = 1e-038
Identities = 32/57 (56%), Positives = 38/57 (66%)
Frame = +2 / +3
Query: 278 VPVSTVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPDP 448
+ VS AR LI LL +DP R+ + GA EIKQHPFF G+NWALVR A PP + P
Sbjct: 243 IQVSLAARQLIYRLLHRDPANRLGSYEGAIEIKQHPFFRGINWALVRAATPPELEAP 413
>gb|BE596005.1|BE596005 PI1_51_B03.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 644
Score = 103 bits (220), Expect(2) = 1e-038
Identities = 37/64 (57%), Positives = 48/64 (75%)
Frame = +2 / +2
Query: 71 STSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTTPFKGDSNRATLCNVVDQP 250
S SFVGT EY+APEI+ G GH SAVDWW GI LYE+L+G TPF+G + + T N++ +
Sbjct: 68 SNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQRTFANILHKD 247
Query: 251 LRFP 262
+RFP
Sbjct: 248 IRFP 259
Score = 77.1 bits (162), Expect(2) = 1e-038
Identities = 32/57 (56%), Positives = 38/57 (66%)
Frame = +2 / +2
Query: 278 VPVSTVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPDP 448
+ VS AR LI LL +DP R+ + GA EIKQHPFF G+NWALVR A PP + P
Sbjct: 266 IQVSLAARQLIYRLLHRDPANRLGSYEGAIEIKQHPFFRGINWALVRAATPPELEAP 436
>gb|CN147606.1|CN147606 WOUND1_50_F12.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_50_F12_A002 5', mRNA sequence
Length = 818
Score = 148 bits (317), Expect(2) = 2e-037
Identities = 56/71 (78%), Positives = 62/71 (87%)
Frame = +2 / +1
Query: 53 EPTDARSTSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTTPFKGDSNRATLC 232
EPTDARS SFVGTHEYLAPEI++G+GHGSAVDWWTFG+FLYELL+G TPF+G N TL
Sbjct: 547 EPTDARSNSFVGTHEYLAPEIIKGDGHGSAVDWWTFGVFLYELLYGKTPFRGPGNDETLA 726
Query: 233 NVVDQPLRFPD 265
NVV Q LRFPD
Sbjct: 727 NVVSQNLRFPD 759
Score = 116 bits (247), Expect(2) = 4e-025
Identities = 48/71 (67%), Positives = 56/71 (78%)
Frame = -2 / -1
Query: 264 SGNRSGWSTTLHSVARLLSPLNGVVPWRSSYRKMPKVHQSTALPWPSPLTISGARYSCVP 85
SGNR TT +V+ PL GV+P++SS RK PKVHQSTALPWPSPL ISGARYSCVP
Sbjct: 758 SGNRRFCETTFANVSSFPGPLKGVLPYKSS*RKTPKVHQSTALPWPSPLMISGARYSCVP 579
Query: 84 TNDVDRASVGS 52
T +++RASVGS
Sbjct: 578 TKELERASVGS 546
Score = 28.6 bits (56), Expect(2) = 2e-037
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +2 / +1
Query: 284 VSTVARDLIRGLLVKD 331
VS+ A+DLIRGLLVK+
Sbjct: 769 VSSNAKDLIRGLLVKE 816
Score = 21.7 bits (41), Expect(2) = 4e-025
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -1 / -3
Query: 331 VLHQKPTDEVPGDGAHR 281
+LHQ +D++ G AHR
Sbjct: 816 LLHQ*TSDQIFGVAAHR 766
>gb|CW034726.1|CW034726 104_265_10502729_114_30378 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10502729, DNA
sequence
Length = 463
Score = 139 bits (298), Expect(2) = 2e-036
Identities = 50/85 (58%), Positives = 64/85 (75%)
Frame = +2 / -1
Query: 8 DSSIKDGSLQLEFNAEPTDARSTSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLH 187
D + + G E EP ARS SFVGTHEYLAPE++ G+GHGSAVDWWT G+F+YE+++
Sbjct: 385 DRTSEPGDSNPELVVEPVSARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFMYEMMY 206
Query: 188 GTTPFKGDSNRATLCNVVDQPLRFP 262
G TPFKG++N TL N++ QPL FP
Sbjct: 205 GRTPFKGENNEKTLVNIIKQPLAFP 131
Score = 107 bits (228), Expect = 2e-022
Identities = 47/79 (59%), Positives = 50/79 (63%)
Frame = -2 / +3
Query: 261 GNRSGWSTTLHSVARLLSPLNGVVPWRSSYRKMPKVHQSTALPWPSPLTISGARYSCVPT 82
G SG L SV L SPLNGV P+ SY P VHQSTALPWP P SGARYSCVPT
Sbjct: 132 GKASGCLMMLTSVFSLFSPLNGVRPYIISYMNTPSVHQSTALPWPCPEITSGARYSCVPT 311
Query: 81 NDVDRASVGSALNSSWSDP 25
ND+DRA GS +S P
Sbjct: 312 NDLDRAETGSTTSSGLLSP 368
Score = 34.5 bits (69), Expect(2) = 2e-036
Identities = 13/28 (46%), Positives = 22/28 (78%)
Frame = +2 / -1
Query: 296 ARDLIRGLLVKDPQKRIATRRGAAEIKQ 379
A+DL+ LL K+P+KR+ + G+AE+K+
Sbjct: 85 AQDLMTQLLAKNPKKRLGSCTGSAEVKR 2
>gb|BG357481.1|BG357481 OV2_30_D12.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 658
Score = 104 bits (222), Expect(2) = 4e-035
Identities = 42/60 (70%), Positives = 47/60 (78%)
Frame = +2 / +2
Query: 284 VSTVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPDPADLGR 463
VS ARDLIRGLLVKDPQ R+ +RG EIKQHPFF+GVNWAL+R A PP VP P +L R
Sbjct: 110 VSFSARDLIRGLLVKDPQHRLGYKRGTTEIKQHPFFEGVNWALIRCASPPDVPKPVELDR 289
Score = 64.8 bits (135), Expect(2) = 4e-035
Identities = 26/34 (76%), Positives = 28/34 (82%)
Frame = +2 / +2
Query: 167 FLYELLHGTTPFKGDSNRATLCNVVDQPLRFPDA 268
FLYELL G TPFKG NRATL NVV QPLRFP++
Sbjct: 2 FLYELLFGKTPFKGSGNRATLFNVVGQPLRFPES 103
>gb|BE594970.1|BE594970 PI1_48_B08.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 645
Score = 103 bits (219), Expect(2) = 1e-034
Identities = 40/58 (68%), Positives = 47/58 (81%)
Frame = +2 / +3
Query: 284 VSTVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPDPADL 457
VS ARD+IRGLLVKDPQ R+ +RGA EIKQHPFF+GVNWAL+R A PP +P P +L
Sbjct: 111 VSFSARDMIRGLLVKDPQHRLGYKRGATEIKQHPFFEGVNWALIRCASPPDIPKPVEL 284
Score = 64.8 bits (135), Expect(2) = 1e-034
Identities = 26/34 (76%), Positives = 28/34 (82%)
Frame = +2 / +3
Query: 167 FLYELLHGTTPFKGDSNRATLCNVVDQPLRFPDA 268
FLYELL G TPFKG NRATL NVV QPLRFP++
Sbjct: 3 FLYELLFGKTPFKGSGNRATLFNVVGQPLRFPES 104
>gb|AW923900.1|AW923900 WS1_30_E12.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 569
Score = 104 bits (222), Expect(3) = 1e-034
Identities = 42/60 (70%), Positives = 47/60 (78%)
Frame = +2 / +2
Query: 284 VSTVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPDPADLGR 463
VS ARDLIRGLLVKDPQ R+ +RG EIKQHPFF+GVNWAL+R A PP VP P +L R
Sbjct: 122 VSFSARDLIRGLLVKDPQHRLGYKRGTTEIKQHPFFEGVNWALIRCASPPDVPKPVELDR 301
Score = 45.1 bits (92), Expect(3) = 1e-034
Identities = 17/24 (70%), Positives = 20/24 (83%)
Frame = +2 / +2
Query: 197 PFKGDSNRATLCNVVDQPLRFPDA 268
PF+G NRATL NVV QPLRFP++
Sbjct: 44 PFQGSGNRATLFNVVGQPLRFPES 115
Score = 35.9 bits (72), Expect(3) = 1e-034
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = +2 / +3
Query: 155 TFGIFLYELLHGTTPFKG 208
T GIFLYELL G TPF+G
Sbjct: 3 TRGIFLYELLFGKTPFRG 56
>gb|CW363767.1|CW363767 fsbb001f035i09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f035i09, DNA
sequence
Length = 650
Score = 107 bits (229), Expect(2) = 3e-034
Identities = 42/64 (65%), Positives = 51/64 (79%)
Frame = +2 / -2
Query: 284 VSTVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPDPADLGR 463
VS ARDLIRGLL K+P R+A+RRGAAE+KQHPFF+GVNWALVR A PP +PD A +
Sbjct: 559 VSAAARDLIRGLLAKEPHNRLASRRGAAEVKQHPFFEGVNWALVRSAQPPYIPDAAAVDH 380
Query: 464 VASK 475
+S+
Sbjct: 379 CSSQ 368
Score = 58.3 bits (121), Expect(2) = 3e-034
Identities = 23/28 (82%), Positives = 23/28 (82%)
Frame = +2 / -2
Query: 185 HGTTPFKGDSNRATLCNVVDQPLRFPDA 268
HG TPFKG NRATL NVV QPLRFPDA
Sbjct: 649 HGATPFKGSGNRATLFNVVAQPLRFPDA 566
>gb|CW038426.1|CW038426 104_270_10504920_115_30386 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10504920, DNA
sequence
Length = 680
Score = 87.2 bits (184), Expect(2) = 6e-034
Identities = 29/52 (55%), Positives = 40/52 (76%)
Frame = +2 / +2
Query: 107 PEIVRGEGHGSAVDWWTFGIFLYELLHGTTPFKGDSNRATLCNVVDQPLRFP 262
PE+V G GHG+ VDWW FG+FLYEL++G TPFKG + ATL N++ + + +P
Sbjct: 2 PELVSGSGHGNGVDWWAFGVFLYELVYGRTPFKGHTKEATLKNILSKQVTYP 157
Score = 78.0 bits (164), Expect(2) = 6e-034
Identities = 30/49 (61%), Positives = 38/49 (77%)
Frame = +2 / +2
Query: 299 RDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPD 445
RDL+ LL +DP++R+ RGAAEIK+HPFF GV+WAL+R PP VPD
Sbjct: 191 RDLVGRLLERDPRRRMGATRGAAEIKRHPFFAGVDWALIRCVAPPVVPD 337
>gb|CW111205.1|CW111205 104_484_11104174_148_34528_089 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11104174, DNA
sequence
Length = 516
Score = 143 bits (306), Expect = 3e-033
Identities = 55/65 (84%), Positives = 58/65 (89%)
Frame = +2 / -1
Query: 26 GSLQLEFNAEPTDARSTSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTTPFK 205
G +EFNAEPTDARS SFVGTHEYLAPEI+RGEGHGSAVDWWT GIFLYELLHG+TPFK
Sbjct: 195 GPAAVEFNAEPTDARSMSFVGTHEYLAPEIIRGEGHGSAVDWWTLGIFLYELLHGSTPFK 16
Query: 206 GDSNR 220
G NR
Sbjct: 15 GAGNR 1
Score = 116 bits (247), Expect = 4e-025
Identities = 49/65 (75%), Positives = 54/65 (83%)
Frame = -2 / +2
Query: 219 RLLSPLNGVVPWRSSYRKMPKVHQSTALPWPSPLTISGARYSCVPTNDVDRASVGSALNS 40
RL +PL GV P SS RKMP VHQSTALPWPSP ISGARYSCVPTND++RASVGSALNS
Sbjct: 2 RLPAPLKGVEPCSSS*RKMPSVHQSTALPWPSPRMISGARYSCVPTNDMERASVGSALNS 181
Query: 39 SWSDP 25
+ + P
Sbjct: 182 TAAGP 196
>gb|CN126293.1|CN126293 RHOH1_16_G04.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_16_G04_A002 3', mRNA sequence
Length = 820
Score = 104 bits (222), Expect(2) = 1e-032
Identities = 42/60 (70%), Positives = 47/60 (78%)
Frame = +2 / +1
Query: 284 VSTVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPDPADLGR 463
VS ARDLIRGLLVKDPQ R+ +RG EIKQHPFF+GVNWAL+R A PP VP P +L R
Sbjct: 241 VSFSARDLIRGLLVKDPQHRLGYKRGTTEIKQHPFFEGVNWALIRCASPPDVPKPVELDR 420
Score = 56.1 bits (116), Expect(2) = 1e-032
Identities = 24/36 (66%), Positives = 26/36 (72%)
Frame = +2 / +1
Query: 161 GIFLYELLHGTTPFKGDSNRATLCNVVDQPLRFPDA 268
G F LL G TPFKG NRATL NVV QPLRFP++
Sbjct: 127 GSFQCLLLFGKTPFKGSGNRATLFNVVGQPLRFPES 234
>gb|CF074385.1|CF074385 FE1_24_H07.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_24_H07_A002 3', mRNA sequence
Length = 635
Score = 103 bits (219), Expect(2) = 2e-032
Identities = 40/58 (68%), Positives = 47/58 (81%)
Frame = +2 / +3
Query: 284 VSTVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPDPADL 457
VS ARD+IRGLLVKDPQ R+ +RGA EIKQHPFF+GVNWAL+R A PP +P P +L
Sbjct: 102 VSFSARDMIRGLLVKDPQHRLGYKRGATEIKQHPFFEGVNWALIRCASPPDIPKPVEL 275
Score = 57.0 bits (118), Expect(2) = 2e-032
Identities = 23/31 (74%), Positives = 25/31 (80%)
Frame = +2 / +3
Query: 176 ELLHGTTPFKGDSNRATLCNVVDQPLRFPDA 268
ELL G TPFKG NRATL NVV QPLRFP++
Sbjct: 3 ELLFGKTPFKGSGNRATLFNVVGQPLRFPES 95
>gb|CN126382.1|CN126382 RHOH1_16_G04.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_16_G04_A002 5', mRNA sequence
Length = 724
Score = 102 bits (218), Expect(2) = 5e-032
Identities = 41/58 (70%), Positives = 46/58 (79%)
Frame = +2 / +2
Query: 284 VSTVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPDPADL 457
VS ARDLIRGLLVKDPQ R+ +RG EIKQHPFF+GVNWAL+R A PP VP P +L
Sbjct: 551 VSFSARDLIRGLLVKDPQHRLGYKRGTTEIKQHPFFEGVNWALIRCASPPDVPKPVEL 724
Score = 56.1 bits (116), Expect(2) = 5e-032
Identities = 24/36 (66%), Positives = 26/36 (72%)
Frame = +2 / +2
Query: 161 GIFLYELLHGTTPFKGDSNRATLCNVVDQPLRFPDA 268
G F LL G TPFKG NRATL NVV QPLRFP++
Sbjct: 437 GSFQCLLLFGKTPFKGSGNRATLFNVVGQPLRFPES 544
>gb|CW310536.1|CW310536 104_799_11469765_116_37434_083 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11469765, DNA
sequence
Length = 614
Score = 138 bits (297), Expect = 5e-032
Identities = 53/61 (86%), Positives = 56/61 (91%)
Frame = +2 / -3
Query: 26 GSLQLEFNAEPTDARSTSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTTPFK 205
G +EFNAEPTDARS SFVGTHEYLAPEI+RGEGHGSAVDWWT GIFLYELLHG+TPFK
Sbjct: 186 GPAAVEFNAEPTDARSMSFVGTHEYLAPEIIRGEGHGSAVDWWTLGIFLYELLHGSTPFK 7
Query: 206 G 208
G
Sbjct: 6 G 4
Score = 113 bits (241), Expect = 3e-024
Identities = 47/62 (75%), Positives = 52/62 (83%)
Frame = -2 / +2
Query: 210 SPLNGVVPWRSSYRKMPKVHQSTALPWPSPLTISGARYSCVPTNDVDRASVGSALNSSWS 31
+PL GV P SS RKMP VHQSTALPWPSP ISGARYSCVPTND++RASVGSALNS+ +
Sbjct: 2 APLKGVEPCSSS*RKMPSVHQSTALPWPSPRMISGARYSCVPTNDMERASVGSALNSTAA 181
Query: 30 DP 25
P
Sbjct: 182 GP 187
>gb|BE362057.1|BE362057 DG1_84_G12.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 498
Score = 138 bits (296), Expect = 7e-032
Identities = 51/75 (68%), Positives = 63/75 (84%)
Frame = +2 / +2
Query: 44 FNAEPTDARSTSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTTPFKGDSNRA 223
F AEP DARS+SFVGTHEY+APE+ RG GHG+AVDWW +G+FLYEL++G TPF G++N A
Sbjct: 194 FVAEPVDARSSSFVGTHEYVAPEVARGGGHGAAVDWWAYGVFLYELIYGRTPFVGENNEA 373
Query: 224 TLCNVVDQPLRFPDA 268
TL N+V +PL FP A
Sbjct: 374 TLRNIVRRPLEFPAA 418
Score = 102 bits (217), Expect = 6e-021
Identities = 47/75 (62%), Positives = 50/75 (66%)
Frame = -2 / -1
Query: 267 ASGNRSGWSTTLHSVARLLSPLNGVVPWRSSYRKMPKVHQSTALPWPSPLTISGARYSCV 88
A+GN SG T L SVA L SP NGV P SS R P HQSTA P P P SGA YSCV
Sbjct: 417 AAGNSSGRRTMLRSVASLFSPTNGVRP*MSS*RNTP*AHQSTAAPCPPPRATSGATYSCV 238
Query: 87 PTNDVDRASVGSALN 43
PTN++DRAS GSA N
Sbjct: 237 PTNELDRASTGSATN 193
>gb|BM330114.1|BM330114 PIC1_47_C12.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 606
Score = 79.0 bits (166), Expect(2) = 3e-031
Identities = 27/51 (52%), Positives = 37/51 (72%)
Frame = +2 / +3
Query: 110 EIVRGEGHGSAVDWWTFGIFLYELLHGTTPFKGDSNRATLCNVVDQPLRFP 262
EI+ G GH SAVDWW GI LYE+L+G TPF+G + + T N++ + +RFP
Sbjct: 33 EIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQRTFANILHKDIRFP 185
Score = 77.1 bits (162), Expect(2) = 3e-031
Identities = 32/57 (56%), Positives = 38/57 (66%)
Frame = +2 / +3
Query: 278 VPVSTVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPDP 448
+ VS AR LI LL +DP R+ + GA EIKQHPFF G+NWALVR A PP + P
Sbjct: 192 IQVSLAARQLIYRLLHRDPANRLGSYEGAIEIKQHPFFRGINWALVRAATPPELEAP 362
>gb|CW308234.1|CW308234 104_796_11468560_148_35739_054 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11468560, DNA
sequence
Length = 605
Score = 134 bits (288), Expect = 9e-031
Identities = 53/82 (64%), Positives = 65/82 (79%)
Frame = +2 / +3
Query: 8 DSSIKDGSLQLEFNAEPTDARSTSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLH 187
+SS +G L+LEF AEP + RS SFVGTHEYLAPEIV GEGHGS+VDWWT G+F++ELL+
Sbjct: 357 NSSGGNGGLELEFVAEPVELRSMSFVGTHEYLAPEIVSGEGHGSSVDWWTLGVFVFELLY 536
Query: 188 GTTPFKGDSNRATLCNVVDQPL 253
G TPFKG + TL N+V + L
Sbjct: 537 GVTPFKGYDDEMTLANIVARAL 602
Score = 109 bits (232), Expect = 5e-023
Identities = 51/76 (67%), Positives = 54/76 (71%)
Frame = -2 / -2
Query: 252 SGWSTTLHSVARLLSPLNGVVPWRSSYRKMPKVHQSTALPWPSPLTISGARYSCVPTNDV 73
S +T L SV PLNGV P RSS K P VHQST LP PSP TISGARYSCVPTND+
Sbjct: 601 SARATMLASVISSS*PLNGVTP*RSSKTKTPSVHQSTELPCPSPDTISGARYSCVPTNDM 422
Query: 72 DRASVGSALNSSWSDP 25
DR+S GSA NSS S P
Sbjct: 421 DRSSTGSATNSSSSPP 374
>gb|CF485574.1|CF485574 POL1_32_G12.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_32_G12_A002 3', mRNA sequence
Length = 563
Score = 104 bits (222), Expect(2) = 8e-030
Identities = 42/60 (70%), Positives = 47/60 (78%)
Frame = +2 / +2
Query: 284 VSTVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPDPADLGR 463
VS ARDLIRGLLVKDPQ R+ +RG EIKQHPFF+GVNWAL+R A PP VP P +L R
Sbjct: 80 VSFSARDLIRGLLVKDPQHRLGYKRGTTEIKQHPFFEGVNWALIRCASPPDVPKPVELDR 259
Score = 46.9 bits (96), Expect(2) = 8e-030
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = +2 / +2
Query: 197 PFKGDSNRATLCNVVDQPLRFPDA 268
PFKG NRATL NVV QPLRFP++
Sbjct: 2 PFKGSGNRATLFNVVGQPLRFPES 73
>gb|CD427064.1|CD427064 SA1_17_G05.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_17_G05_A002 3', mRNA sequence
Length = 652
Score = 93.6 bits (198), Expect(2) = 3e-029
Identities = 35/53 (66%), Positives = 43/53 (81%)
Frame = +2 / +3
Query: 296 ARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPDPAD 454
+RD IRGLLVK+PQ R+ +RGA EIKQHPFF+GVNWAL+R + PP VP P +
Sbjct: 120 SRDPIRGLLVKEPQSRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPVE 278
Score = 56.1 bits (116), Expect(2) = 3e-029
Identities = 22/33 (66%), Positives = 27/33 (81%)
Frame = +2 / +3
Query: 170 LYELLHGTTPFKGDSNRATLCNVVDQPLRFPDA 268
L+ELL+G TPFKG NRATL NVV Q L+FP++
Sbjct: 3 LHELLYGKTPFKGSGNRATLFNVVGQQLKFPES 101
>gb|BM331672.1|BM331672 PIC1_59_C05.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 558
Score = 77.1 bits (162), Expect(2) = 5e-029
Identities = 32/57 (56%), Positives = 38/57 (66%)
Frame = +2 / +3
Query: 278 VPVSTVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPDP 448
+ VS AR LI LL +DP R+ + GA EIKQHPFF G+NWALVR A PP + P
Sbjct: 144 IQVSLAARQLIYRLLHRDPANRLGSYEGAIEIKQHPFFRGINWALVRAATPPELEAP 314
Score = 71.6 bits (150), Expect(2) = 5e-029
Identities = 24/45 (53%), Positives = 33/45 (73%)
Frame = +2 / +3
Query: 128 GHGSAVDWWTFGIFLYELLHGTTPFKGDSNRATLCNVVDQPLRFP 262
GH SAVDWW GI LYE+L+G TPF+G + + T N++ + +RFP
Sbjct: 3 GHTSAVDWWALGILLYEMLYGYTPFRGKTRQRTFANILHKDIRFP 137
>gb|BM329226.1|BM329226 PIC1_35_A07.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 553
Score = 77.1 bits (162), Expect(2) = 5e-029
Identities = 32/57 (56%), Positives = 38/57 (66%)
Frame = +2 / +2
Query: 278 VPVSTVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPDP 448
+ VS AR LI LL +DP R+ + GA EIKQHPFF G+NWALVR A PP + P
Sbjct: 143 IQVSLAARQLIYRLLHRDPANRLGSYEGAIEIKQHPFFRGINWALVRAATPPELEAP 313
Score = 71.6 bits (150), Expect(2) = 5e-029
Identities = 24/45 (53%), Positives = 33/45 (73%)
Frame = +2 / +2
Query: 128 GHGSAVDWWTFGIFLYELLHGTTPFKGDSNRATLCNVVDQPLRFP 262
GH SAVDWW GI LYE+L+G TPF+G + + T N++ + +RFP
Sbjct: 2 GHTSAVDWWALGILLYEMLYGYTPFRGKTRQRTFANILHKDIRFP 136
>gb|BG052508.1|BG052508 RHIZ2_26_A04.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 520
Score = 96.8 bits (205), Expect(2) = 1e-028
Identities = 36/53 (67%), Positives = 44/53 (83%)
Frame = +2 / +2
Query: 296 ARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPDPAD 454
+RDLIRGLLVK+PQ R+ +RGA EIKQHPFF+GVNWAL+R + PP VP P +
Sbjct: 110 SRDLIRGLLVKEPQSRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPVE 268
Score = 51.0 bits (105), Expect(2) = 1e-028
Identities = 20/30 (66%), Positives = 24/30 (80%)
Frame = +2 / +2
Query: 179 LLHGTTPFKGDSNRATLCNVVDQPLRFPDA 268
LL+G TPFKG NRATL NVV Q L+FP++
Sbjct: 2 LLYGKTPFKGSGNRATLFNVVGQQLKFPES 91
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 720,837,575
Number of Sequences: 832831
Number of extensions: 11770356
Number of successful extensions: 164674
Number of sequences better than 1.0e-020: 69
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 18545209515
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)