TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 44956.2.1
(1252 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX618718.1|CX618718 GABR1_41_F07.b1_A002 GA- or brassino... 448 e-127
gb|CN134568.1|CN134568 OX1_27_D10.b1_A002 Oxidatively-stres... 442 e-123
gb|CN134655.1|CN134655 OX1_27_D10.g1_A002 Oxidatively-stres... 329 7e-089
gb|CN133947.1|CN133947 OX1_19_G01.b1_A002 Oxidatively-stres... 325 9e-088
gb|CN124015.1|CN124015 RHOH1_2_C05.b1_A002 Acid- and alkali... 270 6e-075
gb|CF482713.1|CF482713 POL1_8_E03.g1_A002 Pollen Sorghum bi... 171 6e-061
gb|BI074542.1|BI074542 IP1_16_B05.g1_A002 Immature pannicle... 217 2e-055
gb|BI211457.1|BI211457 IP1_57_A12.g1_A002 Immature pannicle... 165 1e-039
gb|BI074860.1|BI074860 IP1_16_B05.b1_A002 Immature pannicle... 156 5e-037
gb|CW235927.1|CW235927 104_691_11215305_148_37401_037 Sorgh... 124 5e-035
gb|CF482636.1|CF482636 POL1_8_E03.b1_A002 Pollen Sorghum bi... 122 5e-028
gb|CL153422.1|CL153422 104_337_10780704_116_31368_336 Sorgh... 74 1e-027
gb|BI076002.1|BI076002 IP1_24_B05.b1_A002 Immature pannicle... 124 2e-027
gb|CW079995.1|CW079995 104_405_10901967_116_32454_050 Sorgh... 85 6e-027
gb|BZ351920.1|BZ351920 hm74e02.g1 WGS-SbicolorF (JM107 adap... 95 1e-025
gb|BZ348238.1|BZ348238 ho60b04.g1 WGS-SbicolorF (JM107 adap... 114 3e-024
>gb|CX618718.1|CX618718 GABR1_41_F07.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_41_F07_A002 3', mRNA sequence
Length = 645
Score = 448 bits (973), Expect(2) = e-127
Identities = 174/197 (88%), Positives = 182/197 (92%)
Frame = -2 / +3
Query: 705 GNNRCAGK*CRDYTRHIVDEDEEISVARRN*SESYWCLPLYTGCNKSNDEKEKGKNYQHC 526
GNNRCAGK*CRDYTRH++DEDEEISVAR N*S+SY CLP+YTGCNKSNDEKEKGKNYQHC
Sbjct: 3 GNNRCAGK*CRDYTRHVIDEDEEISVARCN*SQSYRCLPVYTGCNKSNDEKEKGKNYQHC 182
Query: 525 ICSWSYWQCWPS*L*RSQGWSDWFHKNSCQGVCKQKYQCECYCTRVHCI*YDCRTWRRA* 346
IC W YWQCWPS*L* SQGW DWFH+NSCQGVCKQKYQCECYCTRVHCI*YDCRTWRRA*
Sbjct: 183 ICCWPYWQCWPS*L*CSQGWGDWFHENSCQGVCKQKYQCECYCTRVHCI*YDCRTWRRA* 362
Query: 345 EENLVNHSVREIWPTRGSCRVGRVPGP*PRS*LYDWTGAYN*RRDGNVRFELA*CTSTFA 166
EENLVNHS+REI PTRGSCR RVPGP*PRS*LYD TGAYN* RDGNVRFELA*CTSTFA
Sbjct: 363 EENLVNHSIREIRPTRGSCRASRVPGP*PRS*LYDRTGAYN*WRDGNVRFELA*CTSTFA 542
Query: 165 EHLMLNTLVVHGRFWTT 115
HLM+ +VHGRFWTT
Sbjct: 543 *HLMVLYSLVHGRFWTT 593
Score = 436 bits (946), Expect = e-121
Identities = 175/205 (85%), Positives = 181/205 (88%)
Frame = +3 / -1
Query: 93 KERDNTNLLSKIARAQQGCSTLNAQQK*KCIKLTQILHYHPSVNCKHLSSHIASCGVKGQ 272
K N LLSKIARAQ LN +QK*K IKLTQILHYHPS+NCKHLS HIASCGVKGQ
Sbjct: 615 KTETNLILLSKIARAQGSTIPLNVKQK*KYIKLTQILHYHPSINCKHLSGHIASCGVKGQ 436
Query: 273 ELDQPCNFLWLAISP*RNG*QDFLLKLFSKFGSHIRCNEPWCNSIHIDISACILPGNCFC 452
ELD PCNFLWLA+SP* NG*QDFLLKLFSKFGSHIRCNEPWCNSIHIDISACILPGNCF
Sbjct: 435 ELD*PCNFLWLAVSP*WNG*QDFLLKLFSKFGSHIRCNEPWCNSIHIDISACILPGNCFR 256
Query: 453 ETNHSSLGCAIISLANIASKTNYRCNVDNFSLSLFHHYFCCSLCTKEDTSKIQINYVLPL 632
ETNH SLGC IISLANIASK N RCNVDNFSL LFHHYFCCSLCT+EDT KI+INY+LPL
Sbjct: 255 ETNHPSLGCTIISLANIASKANNRCNVDNFSLFLFHHYFCCSLCTQEDTCKIEINYILPL 76
Query: 633 RFLHPHQQCVSCNPCIIYQHIYCSP 707
RFLHPHQ VSCNPCIIYQHIYCSP
Sbjct: 75 RFLHPHQ*RVSCNPCIIYQHIYCSP 1
Score = 386 bits (838), Expect(3) = e-110
Identities = 167/168 (99%), Positives = 168/168 (100%)
Frame = -3 / +1
Query: 707 WGTIDVLVNNAGITRDTLLMRMKKSQWQDVIDLNLTGVFLCTQAATKVMMKKRKGKIINI 528
WGTIDVLVNNAGITRDTLLMRMKKSQWQDVIDLNLTGVFLCTQAATKVMMKK+KGKIINI
Sbjct: 1 WGTIDVLVNNAGITRDTLLMRMKKSQWQDVIDLNLTGVFLCTQAATKVMMKKKKGKIINI 180
Query: 527 ASVVGLTGNVGQANYSAAKAGVIGFTKTVAREYASRNINVNAIAPGFIASDMTAELGEEL 348
ASVVGLTGNVGQANYSAAKAGVIGFTKTVAREYASRNINVNAIAPGFIASDMTAELGEEL
Sbjct: 181 ASVVGLTGNVGQANYSAAKAGVIGFTKTVAREYASRNINVNAIAPGFIASDMTAELGEEL 360
Query: 347 EKKILSTIPLGRYGQPEEVAGLVEFLALNPAASYMTGQVLTIDGGMVM 204
EKKILSTIPLGRYGQPEEVAGLVEFLALNPAASYMTGQVLTIDGGMVM
Sbjct: 361 EKKILSTIPLGRYGQPEEVAGLVEFLALNPAASYMTGQVLTIDGGMVM 504
Score = 329 bits (712), Expect = 7e-089
Identities = 159/198 (80%), Positives = 162/198 (81%)
Frame = -1 / +2
Query: 706 GEQ*MCW*IMQGLHETHC**G*RNLSGKT*LI*ILLVSSFVHRLQQK***KREREKXXXX 527
GEQ*MCW*IMQGLHET **G*RNLSGK *LI IL VSS VHRLQQK***KR+REK
Sbjct: 2 GEQ*MCW*IMQGLHETRY**G*RNLSGKM*LISILQVSSCVHRLQQK***KRKREKLSTL 181
Query: 526 XXXXXXXXXXXXLIIAQPRLE*LVSQKQLPGSMQAEISM*MLLHQGSLHLI*LPNLEKSL 347
LII QPRL *LVS+KQLPGSMQAEISM*MLLHQGSLHLI*LPNLEKSL
Sbjct: 182 HLLLALLAMLAKLIIVQPRLG*LVSRKQLPGSMQAEISM*MLLHQGSLHLI*LPNLEKSL 361
Query: 346 RRKSCQPFR*GDMANQRKLQGWSSSWPLTPQLAI*LDRCLQLTEGW*CKI*VSLMHFYFC 167
RRKSCQPF *GD ANQRKLQG SSSWPLTPQLAI* DRCLQL EGW*CKI*VSLM+FYFC
Sbjct: 362 RRKSCQPFH*GDTANQRKLQG*SSSWPLTPQLAI*PDRCLQLMEGW*CKI*VSLMYFYFC 541
Query: 166 *AFNVEHPCCARAILDNK 113
FN CARAILDNK
Sbjct: 542 LTFNGIVLPCARAILDNK 595
Score = 281 bits (607), Expect(3) = e-106
Identities = 123/140 (87%), Positives = 124/140 (88%)
Frame = +2 / -3
Query: 113 FVVQNRPCTTRVFNIKCSAKVEVHQANSNLTLPSLRQL*APVQSYS*LRG*GPGTRPTLQ 292
FVVQNRPCT IKC AKVEVHQANSNLTLPSL QL*APV+SYS*LRG*GPGTR LQ
Sbjct: 595 FVVQNRPCTREYNTIKC*AKVEVHQANSNLTLPSLHQL*APVRSYS*LRG*GPGTRLALQ 416
Query: 293 LPLVGHISLTEWLTRFSSQALLQVRQSYQMQ*TLVQ*HSH*YFCLHTPWQLFL*NQSLQP 472
LPLVG ISL EWLTRFSSQALLQVRQSYQMQ*TLVQ*HSH*YFCLHTPWQLF *NQS QP
Sbjct: 415 LPLVGRISLMEWLTRFSSQALLQVRQSYQMQ*TLVQ*HSH*YFCLHTPWQLFS*NQSPQP 236
Query: 473 WLRYN*LGQHCQ*DQLQMQC 532
WL YN*LGQHCQ* Q QMQC
Sbjct: 235 WLHYN*LGQHCQ*GQQQMQC 176
Score = 204 bits (440), Expect(2) = 2e-068
Identities = 89/123 (72%), Positives = 93/123 (75%)
Frame = +1 / -2
Query: 88 ITKKETTLICCPKSPVHNKGVQH*MXXXXXXXXXXXXXYITIPPSIVSTCPVI*LAAGLR 267
+ ++ T CCPKSPVH H*M YITIPPSIVSTCPVI*LAAGLR
Sbjct: 620 LQRQRQT*FCCPKSPVHKGVQYH*MLSKSRSTSS*LKSYITIPPSIVSTCPVI*LAAGLR 441
Query: 268 ARNSTNPATSSGWPYLPNGMVDKIFFXXXXXXXAVISDAMNPGAIAFTLIFLLAYSLATV 447
ARNST+PATSSGWPYLPNGMVDKIFF AVISDAMNPGAIAFTLIFLLAYSLATV
Sbjct: 440 ARNSTSPATSSGWPYLPNGMVDKIFFSSSSPSSAVISDAMNPGAIAFTLIFLLAYSLATV 261
Query: 448 FVK 456
FVK
Sbjct: 260 FVK 252
Score = 118 bits (253), Expect(3) = e-106
Identities = 53/66 (80%), Positives = 53/66 (80%)
Frame = +1 / -2
Query: 508 VRPTTDAMXXXXXXXXXXXTFVAACVQRKTPVRFRSITSCH*DFFILINNVSRVIPALFT 687
VRPTTDAM TFVAACV RKTPVR RSITSCH*DFFILINNVSRVIPALFT
Sbjct: 200 VRPTTDAMLIIFPFFFFIITFVAACVHRKTPVRLRSITSCH*DFFILINNVSRVIPALFT 21
Query: 688 STSIVP 705
STSIVP
Sbjct: 20 STSIVP 3
Score = 77.1 bits (162), Expect(2) = 2e-068
Identities = 33/44 (75%), Positives = 33/44 (75%)
Frame = +2 / -3
Query: 575 QPVYKGRHQ*DSDQLRLATEIXXXXXTMCLV*SLHYLPAHLLFP 706
QPVY GRH *D DQL LATEI CLV*SLHYLPAHLLFP
Sbjct: 133 QPVYTGRHL*D*DQLHLATEISSSSSITCLV*SLHYLPAHLLFP 2
Score = 30.4 bits (60), Expect(2) = e-127
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = -2 / +1
Query: 132 GRFWTTN*CCLFLCNTLW**I*H 64
G F N* CL LCNT W *I H
Sbjct: 577 GDFGQQN*VCLCLCNTHWE*IRH 645
Score = 26.7 bits (52), Expect(3) = e-110
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -3 / +1
Query: 140 LCTGDFGQQ 114
LCTGDFGQQ
Sbjct: 568 LCTGDFGQQ 594
Score = 26.3 bits (51), Expect(3) = e-106
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3 / -3
Query: 72 FITREYYKERDNTNLL 119
FI EYYK+RD N +
Sbjct: 637 FIPSEYYKDRDKPNFV 590
Score = 25.8 bits (50), Expect(3) = e-110
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -3 / +2
Query: 116 QISVVSFFVILSGNKS 69
+I VS FVIL+GNKS
Sbjct: 593 KIRFVSVFVILTGNKS 640
>gb|CN134568.1|CN134568 OX1_27_D10.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_27_D10_A002 3', mRNA sequence
Length = 818
Score = 442 bits (960), Expect = e-123
Identities = 190/206 (92%), Positives = 200/206 (97%)
Frame = -3 / +1
Query: 821 AEEVSKEIEASGGEAITFGGDVSKEADVESMMKAALDKWGTIDVLVNNAGITRDTLLMRM 642
AEEVSKEIEASGG+AITFGGDVSKEADVESM+K A+D WGTIDVLVNNAGITRDTLLMRM
Sbjct: 1 AEEVSKEIEASGGQAITFGGDVSKEADVESMIKMAVDTWGTIDVLVNNAGITRDTLLMRM 180
Query: 641 KKSQWQDVIDLNLTGVFLCTQAATKVMMKKRKGKIINIASVVGLTGNVGQANYSAAKAGV 462
KKSQWQDVIDLNLTGVFLCTQAATKVMMKK+KG+IINIASVVGLTGN GQANY+AAKAGV
Sbjct: 181 KKSQWQDVIDLNLTGVFLCTQAATKVMMKKKKGRIINIASVVGLTGNAGQANYAAAKAGV 360
Query: 461 IGFTKTVAREYASRNINVNAIAPGFIASDMTAELGEELEKKILSTIPLGRYGQPEEVAGL 282
IGFTKTVAREYASRNIN N IAPGFIASDMTAELGEELEKKILS IPLGRYG+PE+VAGL
Sbjct: 361 IGFTKTVAREYASRNINANVIAPGFIASDMTAELGEELEKKILSAIPLGRYGRPEDVAGL 540
Query: 281 VEFLALNPAASYMTGQVLTIDGGMVM 204
VEFLAL+PAASY+TGQVLTIDGGMVM
Sbjct: 541 VEFLALSPAASYITGQVLTIDGGMVM 618
Score = 275 bits (596), Expect = 7e-073
Identities = 120/210 (57%), Positives = 147/210 (70%)
Frame = +3 / -3
Query: 189 LTQILHYHPSVNCKHLSSHIASCGVKGQELDQPCNFLWLAISP*RNG*QDFLLKLFSKFG 368
L + LHYHPS++ + LSS +A +G E Q C LW I P* N *Q+FLL LFSKF
Sbjct: 633 LPKPLHYHPSIDGEDLSSDVACSWAEG*EFHQTCYILWPTIPP*GNS*QNFLL*LFSKFS 454
Query: 369 SHIRCNEPWCNSIHIDISACILPGNCFCETNHSSLGCAIISLANIASKTNYRCNVDNFSL 548
SHI CN+ +++ I+ISA ILP NCF E N+ SLG ++ISL++IA TN RC VDN SL
Sbjct: 453 SHI*CNKARSDNVCINISAGILPSNCFREPNNPSLGSSVISLSSIAG*TNNRCYVDNSSL 274
Query: 549 SLFHHYFCCSLCTKEDTSKIQINYVLPLRFLHPHQQCVSCNPCIIYQHIYCSPFI*SCFH 728
L HHYFCCSL KE+ KIQIN++LPLRFLH HQQCV C+ C++Y HI SP I S F+
Sbjct: 273 FLLHHYFCCSLRAKENACKIQINHILPLRFLHSHQQCVPCDSCVVY*HINGSPCINSHFY 94
Query: 729 HRLYISFF*NISSEGDSLTTRCFNLFGDLF 818
HR IS F NISS+G+ L + CFNL D F
Sbjct: 93 HRFNISLFGNISSKGNGLASGCFNLL*DFF 4
Score = 260 bits (563), Expect = 3e-068
Identities = 112/206 (54%), Positives = 143/206 (69%)
Frame = -2 / +3
Query: 816 RGLQRD*SIWW*GYHLRRRCFKRS*CRVYDESSSR*MGNNRCAGK*CRDYTRHIVDEDEE 637
R L+ D*SI G++L RRCF+R *C +YD++ MGN+ CA K R++T HIVDE+EE
Sbjct: 6 RSLKGD*SIRRPGHYLWRRCFQRG*C*IYDKNGC*YMGNH*CASKQRRNHTGHIVDENEE 185
Query: 636 ISVARRN*SESYWCLPLYTGCNKSNDEKEKGKNYQHCICSWSYWQCWPS*L*RSQGWSDW 457
I++AR +* ESY PL+ GCNKSNDE+EKGKNYQH I W QCW *L QGW W
Sbjct: 186 IAMARCD*FESYRRFPLHAGCNKSNDEEEKGKNYQHSIGCWFNRQCWTG*LRCCQGWGYW 365
Query: 456 FHKNSCQGVCKQKYQCECYCTRVHCI*YDCRTWRRA*EENLVNHSVREIWPTRGSCRVGR 277
H+NSC GVC+QKY C+ Y + ++CI YDC TWRRA EEN V++S+R +W RG R G
Sbjct: 366 VHENSC*GVCQQKY*CKRYRSWLYCIRYDC*TWRRAREENSVSYSLRAVWSARGCSRSGG 545
Query: 276 VPGP*PRS*LYDWTGAYN*RRDGNVR 199
+ P P L+ WTG ++ RDGNV+
Sbjct: 546 ILSPQPSCKLHHWTGPHHRWRDGNVK 623
Score = 185 bits (399), Expect(2) = 5e-083
Identities = 82/104 (78%), Positives = 87/104 (83%)
Frame = +1 / -1
Query: 508 VRPTTDAMXXXXXXXXXXXTFVAACVQRKTPVRFRSITSCH*DFFILINNVSRVIPALFT 687
V+PTTDAM TFVAACVQRKTPVRF+SITSCH DFFILINNVSRVIPALFT
Sbjct: 314 VKPTTDAMLIILPFFFFIITFVAACVQRKTPVRFKSITSCHCDFFILINNVSRVIPALFT 135
Query: 688 STSIVPHLSRAAFIIDSTSASFETSPPKVIASPPDASISLETSS 819
STS+VPH+S A FIIDSTSAS ETSPPKV+A PPDASIS ETSS
Sbjct: 134 STSMVPHVSTAIFIIDSTSASLETSPPKVMAWPPDASISFETSS 3
Score = 144 bits (310), Expect(2) = 5e-083
Identities = 62/84 (73%), Positives = 68/84 (80%)
Frame = +1 / -1
Query: 202 YITIPPSIVSTCPVI*LAAGLRARNSTNPATSSGWPYLPNGMVDKIFFXXXXXXXAVISD 381
YITIPPS+V TCPV+*LAAGLRA+NST PATSSG PY P G+ D+IFF AVISD
Sbjct: 620 YITIPPSMVRTCPVM*LAAGLRAKNSTRPATSSGRPYRPKGIADRIFFSSSSPSSAVISD 441
Query: 382 AMNPGAIAFTLIFLLAYSLATVFV 453
A+ PGAI F LIFLLAYSLATVFV
Sbjct: 440 AIKPGAITFALIFLLAYSLATVFV 369
Score = 112 bits (239), Expect(2) = 9e-032
Identities = 61/110 (55%), Positives = 69/110 (62%)
Frame = +2 / -2
Query: 203 TLPSLRQL*APVQSYS*LRG*GPGTRPTLQLPLVGHISLTEWLTRFSSQALLQVRQSYQM 382
TLPSL + * PVQ S G*G P L PL H +L E LT FSS ALLQV+QSY M
Sbjct: 619 TLPSLHRW*GPVQ*CSLQLG*GLRIPPDLLHPLADHTALRE*LTEFSSLALLQVQQSYLM 440
Query: 383 Q*TLVQ*HSH*YFCLHTPWQLFL*NQSLQPWLRYN*LGQHCQ*DQLQMQC 532
Q*+ +* H*YFC HTP QLF * Q QPW + N* QHC+ +Q M C
Sbjct: 439 Q*SQER*RLH*YFCWHTP*QLFS*TQ*PQPWQQRN*PVQHCRLNQQPMLC 290
Score = 90.0 bits (190), Expect(2) = 6e-037
Identities = 52/85 (61%), Positives = 59/85 (69%)
Frame = -1 / +2
Query: 793 HLVVRLSPSEEMFQKKLM*SL**KQL*INGEQ*MCW*IMQGLHETHC**G*RNLSGKT*L 614
H R P EEMF K+LM +L**K L I+GE MC * Q H THC** *RN +GK *L
Sbjct: 29 HPEARPLPLEEMFPKRLMLNL**KWLLIHGEPLMC**TTQESHGTHC**E*RNRNGKM*L 208
Query: 613 I*ILLVSSFVHRLQQK***KREREK 539
I*IL SF RLQQK***+R+RE+
Sbjct: 209 I*ILQAFSFARRLQQK***RRKREE 283
Score = 86.8 bits (183), Expect(2) = 6e-037
Identities = 53/103 (51%), Positives = 55/103 (53%)
Frame = -1 / +2
Query: 475 PRLE*LVSQKQLPGSMQAEISM*MLLHQGSLHLI*LPNLEKSLRRKSCQPFR*GDMANQR 296
PRL L S+KQL GSM AEI M L LH I*L NLEKS RRK CQ F *G M QR
Sbjct: 347 PRLGLLGSRKQLLGSMPAEILMQTLSLLALLHQI*LLNLEKS*RRKFCQLFP*GGMVGQR 526
Query: 295 KLQGWSSSWPLTPQLAI*LDRCLQLTEGW*CKI*VSLMHFYFC 167
Q W +S P A LDR EGW*CK L C
Sbjct: 527 M*QVWWNS*PSAQLQATSLDRSSPSMEGW*CKGFGKLFRLQIC 655
Score = 46.9 bits (96), Expect(2) = 9e-032
Identities = 23/46 (50%), Positives = 26/46 (56%)
Frame = +2 / -2
Query: 575 QPVYKGRHQ*DSDQLRLATEIXXXXXTMCLV*SLHYLPAHLLFPIY 712
QP KG+ *DS+Q LA I TMC V* L L AH FP+Y
Sbjct: 247 QPACKGKRL*DSNQSHLAIAISSFSSTMCPV*FLRCLLAHQWFPMY 110
>gb|CN134655.1|CN134655 OX1_27_D10.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_27_D10_A002 5', mRNA sequence
Length = 748
Score = 329 bits (712), Expect = 7e-089
Identities = 144/174 (82%), Positives = 153/174 (87%)
Frame = -3 / +3
Query: 998 GVQTHVAAVEQAIVKDATKLEAPVVVVTGASRXXXXXXXXXXXXXGCKVLVNYARSSKEA 819
GV+THV AV+Q IV+ TKLE PVVVVTGASR GCKVLVNYARSSKEA
Sbjct: 225 GVRTHVTAVDQVIVQGETKLEGPVVVVTGASRGIGKATALALGKAGCKVLVNYARSSKEA 404
Query: 818 EEVSKEIEASGGEAITFGGDVSKEADVESMMKAALDKWGTIDVLVNNAGITRDTLLMRMK 639
EEVSKEIEASGG+AITFGGDVSKEADVESM+K A+D WGTIDVLVNNAGITRDTLLMRMK
Sbjct: 405 EEVSKEIEASGGQAITFGGDVSKEADVESMIKMAVDTWGTIDVLVNNAGITRDTLLMRMK 584
Query: 638 KSQWQDVIDLNLTGVFLCTQAATKVMMKKRKGKIINIASVVGLTGNVGQANYSA 477
KSQWQDVIDLNLTGVFLCTQAATKVMMKK+KG+IINIASVVGLTGN GQANY+A
Sbjct: 585 KSQWQDVIDLNLTGVFLCTQAATKVMMKKKKGRIINIASVVGLTGNAGQANYAA 746
Score = 280 bits (606), Expect = 3e-074
Identities = 126/164 (76%), Positives = 135/164 (82%)
Frame = +1 / -1
Query: 508 VRPTTDAMXXXXXXXXXXXTFVAACVQRKTPVRFRSITSCH*DFFILINNVSRVIPALFT 687
V+PTTDAM TFVAACVQRKTPVRF+SITSCH DFFILINNVSRVIPALFT
Sbjct: 715 VKPTTDAMLIILPFFFFIITFVAACVQRKTPVRFKSITSCHCDFFILINNVSRVIPALFT 536
Query: 688 STSIVPHLSRAAFIIDSTSASFETSPPKVIASPPDASISLETSSASFEDRA*FTRTLHPA 867
STS+VPH+S A FIIDSTSAS ETSPPKV+A PPDASIS ETSSASFEDRA*FT+TL PA
Sbjct: 535 STSMVPHVSTAIFIIDSTSASLETSPPKVMAWPPDASISFETSSASFEDRA*FTKTLQPA 356
Query: 868 FPRARAVALPIPLDAPVTTTTGASSLVASFTIACSTAATWVCTP 999
FPRA AVA PIPL+APVTTTTG S+ V+ TI STA T V TP
Sbjct: 355 FPRANAVAFPIPLEAPVTTTTGPSNFVSPCTIT*STAVT*VLTP 224
Score = 228 bits (493), Expect = 1e-058
Identities = 99/175 (56%), Positives = 121/175 (69%)
Frame = +3 / -3
Query: 480 AIISLANIASKTNYRCNVDNFSLSLFHHYFCCSLCTKEDTSKIQINYVLPLRFLHPHQQC 659
++ISL++IA TN RC VDN SL L HHYFCCSL KE+ KIQIN++LPLRFLH HQQC
Sbjct: 743 SVISLSSIAG*TNNRCYVDNSSLFLLHHYFCCSLRAKENACKIQINHILPLRFLHSHQQC 564
Query: 660 VSCNPCIIYQHIYCSPFI*SCFHHRLYISFF*NISSEGDSLTTRCFNLFGDLFSLFRGPG 839
V C+ C++Y HI SP I S F+HR IS F NISS+G+ L + CFNL D F L G
Sbjct: 563 VPCDSCVVY*HINGSPCINSHFYHRFNISLFGNISSKGNGLASGCFNLL*DFFGLL*RSG 384
Query: 840 IVYQNLASCFSKG*SSCLTNPSRCTCNNNNWSFQLGSIFYNCLFNSGNMGLHTRE 1004
I++Q+LA+CFSK S +NP T NNN+ +FQL YN L NS NM +TRE
Sbjct: 383 IIHQDLAACFSKSQCSGFSNPPGSTSNNNHRTFQLCLPLYNNLINSRNMSSYTRE 219
Score = 208 bits (448), Expect = 2e-052
Identities = 91/172 (52%), Positives = 114/172 (66%)
Frame = -2 / +2
Query: 999 WCANPCCRC*TSNCKRCYQAGXXXXXCYRCI*RDW*GNCSSPWKSRMQGSGKLCPVLERG 820
WC N C C*+S C R + G CY C DW +C WKSR+QG G+LCP+ + G
Sbjct: 224 WCKNSCYGC*SSYCTRGDKVGRSCGCCYWCFQGDWKSHCIGSWKSRLQGLGELCPIFKGG 403
Query: 819 *RGLQRD*SIWW*GYHLRRRCFKRS*CRVYDESSSR*MGNNRCAGK*CRDYTRHIVDEDE 640
R L+ D*SI G++L RRCF+R *C +YD++ MGN+ CA K R++T HIVDE+E
Sbjct: 404 RRSLKGD*SIRRPGHYLWRRCFQRG*C*IYDKNGC*YMGNH*CASKQRRNHTGHIVDENE 583
Query: 639 EISVARRN*SESYWCLPLYTGCNKSNDEKEKGKNYQHCICSWSYWQCWPS*L 484
EI++AR +* ESY PL+ GCNKSNDE+EKGKNYQH I W QCW *L
Sbjct: 584 EIAMARCD*FESYRRFPLHAGCNKSNDEEEKGKNYQHSIGCWFNRQCWTG*L 739
Score = 105 bits (223), Expect = 2e-021
Identities = 63/112 (56%), Positives = 70/112 (62%)
Frame = -1 / +1
Query: 874 LEKQDARFW*TMPGXXXXXXXXXXXXKHLVVRLSPSEEMFQKKLM*SL**KQL*INGEQ* 695
LEKQ AR W* MP KH R P EEMF K+LM +L**K L I+GE
Sbjct: 349 LEKQAARSW*IMPDLQRRPKKSQRRLKHPEARPLPLEEMFPKRLMLNL**KWLLIHGEPL 528
Query: 694 MCW*IMQGLHETHC**G*RNLSGKT*LI*ILLVSSFVHRLQQK***KREREK 539
MC * Q H THC** *RN +GK *LI*IL SF RLQQK***+R+RE+
Sbjct: 529 MC**TTQESHGTHC**E*RNRNGKM*LI*ILQAFSFARRLQQK***RRKREE 684
>gb|CN133947.1|CN133947 OX1_19_G01.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_19_G01_A002 3', mRNA sequence
Length = 643
Score = 325 bits (704), Expect = 9e-088
Identities = 139/150 (92%), Positives = 146/150 (97%)
Frame = -3 / +3
Query: 653 LMRMKKSQWQDVIDLNLTGVFLCTQAATKVMMKKRKGKIINIASVVGLTGNVGQANYSAA 474
LMRMKKSQWQDVIDLNLTGVFLCTQAATKVMMKK+KG+IINIASVVGLTGN GQANY+AA
Sbjct: 3 LMRMKKSQWQDVIDLNLTGVFLCTQAATKVMMKKKKGRIINIASVVGLTGNAGQANYAAA 182
Query: 473 KAGVIGFTKTVAREYASRNINVNAIAPGFIASDMTAELGEELEKKILSTIPLGRYGQPEE 294
KAGVIGFTKTVAREYASRNIN N IAPGFIASDMTAELGEELEKKILS IPLGRYG+PE+
Sbjct: 183 KAGVIGFTKTVAREYASRNINANVIAPGFIASDMTAELGEELEKKILSAIPLGRYGRPED 362
Query: 293 VAGLVEFLALNPAASYMTGQVLTIDGGMVM 204
VAGLVEFLAL+PAASY+TGQVLTIDGGMVM
Sbjct: 363 VAGLVEFLALSPAASYITGQVLTIDGGMVM 452
Score = 208 bits (449), Expect = 1e-052
Identities = 91/155 (58%), Positives = 111/155 (71%)
Frame = +3 / -3
Query: 189 LTQILHYHPSVNCKHLSSHIASCGVKGQELDQPCNFLWLAISP*RNG*QDFLLKLFSKFG 368
L + LHYHPS++ + LSS +A +G E Q C LW ISP* N *Q+FLL LFSKF
Sbjct: 467 LPKPLHYHPSIDGEDLSSDVACSWAEG*EFHQTCYILWPTISP*GNS*QNFLL*LFSKFS 288
Query: 369 SHIRCNEPWCNSIHIDISACILPGNCFCETNHSSLGCAIISLANIASKTNYRCNVDNFSL 548
SHI CN+ +++ I+ISA ILP NCF E N+ SLG ++ISL++IA TN RC VDN SL
Sbjct: 287 SHI*CNKARSDNVCINISAGILPSNCFREPNNPSLGSSVISLSSIAG*TNNRCYVDNSSL 108
Query: 549 SLFHHYFCCSLCTKEDTSKIQINYVLPLRFLHPHQ 653
L HHYFCCSL KE+ KIQIN++LPLRFLH HQ
Sbjct: 107 FLLHHYFCCSLRAKENACKIQINHILPLRFLHSHQ 3
Score = 207 bits (446), Expect = 3e-052
Identities = 86/152 (56%), Positives = 106/152 (69%)
Frame = -2 / +2
Query: 654 VDEDEEISVARRN*SESYWCLPLYTGCNKSNDEKEKGKNYQHCICSWSYWQCWPS*L*RS 475
VDE+EEI++AR +* ESY PL+ GCNKSNDE+EKGKNYQH I W QCW *L
Sbjct: 2 VDENEEIAMARCD*FESYRRFPLHAGCNKSNDEEEKGKNYQHSIGCWFNRQCWTG*LRCC 181
Query: 474 QGWSDWFHKNSCQGVCKQKYQCECYCTRVHCI*YDCRTWRRA*EENLVNHSVREIWPTRG 295
QGW W H+NSC GVC+QKY C+ Y + ++CI YDC TWRRA EEN V++S+R IW RG
Sbjct: 182 QGWGYWVHENSC*GVCQQKY*CKRYRSWLYCIRYDC*TWRRAREENSVSYSLRAIWSARG 361
Query: 294 SCRVGRVPGP*PRS*LYDWTGAYN*RRDGNVR 199
R G + P P L+ WTG ++ RDGNV+
Sbjct: 362 CSRSGGILSPQPSCKLHHWTGPHHRWRDGNVK 457
Score = 144 bits (310), Expect(2) = 7e-052
Identities = 62/84 (73%), Positives = 68/84 (80%)
Frame = +1 / -1
Query: 202 YITIPPSIVSTCPVI*LAAGLRARNSTNPATSSGWPYLPNGMVDKIFFXXXXXXXAVISD 381
YITIPPS+V TCPV+*LAAGLRA+NST PATSSG PY P G+ D+IFF AVISD
Sbjct: 454 YITIPPSMVRTCPVM*LAAGLRAKNSTRPATSSGRPYRPKGIADRIFFSSSSPSSAVISD 275
Query: 382 AMNPGAIAFTLIFLLAYSLATVFV 453
A+ PGAI F LIFLLAYSLATVFV
Sbjct: 274 AIKPGAITFALIFLLAYSLATVFV 203
Score = 114 bits (244), Expect(2) = 3e-026
Identities = 62/110 (56%), Positives = 70/110 (63%)
Frame = +2 / -2
Query: 203 TLPSLRQL*APVQSYS*LRG*GPGTRPTLQLPLVGHISLTEWLTRFSSQALLQVRQSYQM 382
TLPSL + * PVQ S G*G P L PL HI+L E LT FSS ALLQV+QSY M
Sbjct: 453 TLPSLHRW*GPVQ*CSLQLG*GLRIPPDLLHPLADHIALRE*LTEFSSLALLQVQQSYLM 274
Query: 383 Q*TLVQ*HSH*YFCLHTPWQLFL*NQSLQPWLRYN*LGQHCQ*DQLQMQC 532
Q*+ +* H*YFC HTP QLF * Q QPW + N* QHC+ +Q M C
Sbjct: 273 Q*SQER*RLH*YFCWHTP*QLFS*TQ*PQPWQQRN*PVQHCRLNQQPMLC 124
Score = 90.0 bits (190), Expect(2) = 1e-025
Identities = 54/103 (52%), Positives = 56/103 (54%)
Frame = -1 / +1
Query: 475 PRLE*LVSQKQLPGSMQAEISM*MLLHQGSLHLI*LPNLEKSLRRKSCQPFR*GDMANQR 296
PRL L S+KQL GSM AEI M L LH I*L NLEKS RRK CQ F *GDM QR
Sbjct: 181 PRLGLLGSRKQLLGSMPAEILMQTLSLLALLHQI*LLNLEKS*RRKFCQLFP*GDMVGQR 360
Query: 295 KLQGWSSSWPLTPQLAI*LDRCLQLTEGW*CKI*VSLMHFYFC 167
Q W +S P A LDR EGW*CK L C
Sbjct: 361 M*QVWWNS*PSAQLQATSLDRSSPSMEGW*CKGFGKLFRLQIC 489
Score = 81.7 bits (172), Expect(2) = 7e-052
Identities = 35/49 (71%), Positives = 37/49 (75%)
Frame = +1 / -1
Query: 508 VRPTTDAMXXXXXXXXXXXTFVAACVQRKTPVRFRSITSCH*DFFILIN 654
V+PTTDAM TFVAACVQRKTPVRF+SITSCH DFFILIN
Sbjct: 148 VKPTTDAMLIILPFFFFIITFVAACVQRKTPVRFKSITSCHCDFFILIN 2
Score = 48.7 bits (100), Expect(2) = 1e-025
Identities = 27/39 (69%), Positives = 31/39 (79%)
Frame = -1 / +1
Query: 655 C**G*RNLSGKT*LI*ILLVSSFVHRLQQK***KREREK 539
C** *RN +GK *LI*IL SF RLQQK***+R+RE+
Sbjct: 1 C**E*RNRNGKM*LI*ILQAFSFARRLQQK***RRKREE 117
Score = 25.8 bits (50), Expect(2) = 3e-026
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2 / -2
Query: 575 QPVYKGRHQ*DSDQLRLATEIXXXXXT 655
QP KG+ *DS+Q LA I T
Sbjct: 81 QPACKGKRL*DSNQSHLAIAISSFSST 1
>gb|CN124015.1|CN124015 RHOH1_2_C05.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_2_C05_A002 3', mRNA sequence
Length = 450
Score = 270 bits (583), Expect(2) = 6e-075
Identities = 111/136 (81%), Positives = 116/136 (85%)
Frame = +3 / -2
Query: 93 KERDNTNLLSKIARAQQGCSTLNAQQK*KCIKLTQILHYHPSVNCKHLSSHIASCGVKGQ 272
K N LLSKIARAQ LN +QK*K IKLTQILHYHPS+NCKHLS HIASCGVKGQ
Sbjct: 410 KTETNLILLSKIARAQGSTIPLNVKQK*KYIKLTQILHYHPSINCKHLSGHIASCGVKGQ 231
Query: 273 ELDQPCNFLWLAISP*RNG*QDFLLKLFSKFGSHIRCNEPWCNSIHIDISACILPGNCFC 452
EL+ PCNFLWL +SP* NG*QDFLLKLFS+FGSHIRCNEPWCNSIHIDISACILPGNCF
Sbjct: 230 ELE*PCNFLWLGVSP*WNG*QDFLLKLFSQFGSHIRCNEPWCNSIHIDISACILPGNCFR 51
Query: 453 ETNHSSLGCAIISLAN 500
ETNH SLGC ISLAN
Sbjct: 50 ETNHPSLGCTKISLAN 3
Score = 267 bits (577), Expect(2) = 4e-072
Identities = 109/129 (84%), Positives = 113/129 (87%)
Frame = -2 / +2
Query: 501 CWPS*L*RSQGWSDWFHKNSCQGVCKQKYQCECYCTRVHCI*YDCRTWRRA*EENLVNHS 322
CWPS* * SQGW DWFH+NS QGVCKQKYQCECYCTRVHCI*YDCRT RRA*EENLVNHS
Sbjct: 2 CWPS*F*CSQGWGDWFHENSSQGVCKQKYQCECYCTRVHCI*YDCRTGRRA*EENLVNHS 181
Query: 321 VREIWPTRGSCRVGRVPGP*PRS*LYDWTGAYN*RRDGNVRFELA*CTSTFAEHLMLNTL 142
+REI PTRGSCR RVPGP*PRS*LY TGAYN* RDGNVRFELA*CTSTFA HL +
Sbjct: 182 IREIRPTRGSCRAIRVPGP*PRS*LYARTGAYN*WRDGNVRFELA*CTSTFA*HLRVLYS 361
Query: 141 VVHGRFWTT 115
+VHGRFWTT
Sbjct: 362 LVHGRFWTT 388
Score = 250 bits (541), Expect = 3e-065
Identities = 110/130 (84%), Positives = 114/130 (87%)
Frame = +2 / -1
Query: 113 FVVQNRPCTTRVFNIKCSAKVEVHQANSNLTLPSLRQL*APVQSYS*LRG*GPGTRPTLQ 292
FVVQNRPCT +KC AKVEVHQANSNLTLPSL QL*APV++YS*LRG*GPGTR LQ
Sbjct: 390 FVVQNRPCTREYNTLKC*AKVEVHQANSNLTLPSLHQL*APVRAYS*LRG*GPGTRIALQ 211
Query: 293 LPLVGHISLTEWLTRFSSQALLQVRQSYQMQ*TLVQ*HSH*YFCLHTPWQLFL*NQSLQP 472
LPLVG ISL EWLTRFSSQALL VRQSYQMQ*TLVQ*HSH*YFCLHTPW+LF *NQS QP
Sbjct: 210 LPLVGRISLMEWLTRFSSQALLPVRQSYQMQ*TLVQ*HSH*YFCLHTPWELFS*NQSPQP 31
Query: 473 WLRYN*LGQH 502
WL N*LGQH
Sbjct: 30 WLH*N*LGQH 1
Score = 229 bits (495), Expect = 6e-059
Identities = 103/125 (82%), Positives = 107/125 (85%)
Frame = -1 / +1
Query: 487 IIAQPRLE*LVSQKQLPGSMQAEISM*MLLHQGSLHLI*LPNLEKSLRRKSCQPFR*GDM 308
I+ QPRL *LVS+KQ PGSMQAEISM*MLLHQGSLHLI*LPN EKSLRRKSCQPF *GD
Sbjct: 16 ILVQPRLG*LVSRKQFPGSMQAEISM*MLLHQGSLHLI*LPNWEKSLRRKSCQPFH*GDT 195
Query: 307 ANQRKLQGWSSSWPLTPQLAI*LDRCLQLTEGW*CKI*VSLMHFYFC*AFNVEHPCCARA 128
NQRKLQG+SSSWPLTPQLAI DRCLQL EGW*CKI*VSLM+FYFC F CARA
Sbjct: 196 PNQRKLQGYSSSWPLTPQLAICPDRCLQLMEGW*CKI*VSLMYFYFCLTFKGIVLPCARA 375
Query: 127 ILDNK 113
ILDNK
Sbjct: 376 ILDNK 390
Score = 215 bits (464), Expect(2) = 2e-056
Identities = 94/99 (94%), Positives = 95/99 (95%)
Frame = -3 / +3
Query: 500 VGQANYSAAKAGVIGFTKTVAREYASRNINVNAIAPGFIASDMTAELGEELEKKILSTIP 321
VGQAN+SAAKAGVIGFTKTV REYASRNINVNAIAPGFIASDMTAELGEELEKKILSTIP
Sbjct: 3 VGQANFSAAKAGVIGFTKTVPREYASRNINVNAIAPGFIASDMTAELGEELEKKILSTIP 182
Query: 320 LGRYGQPEEVAGLVEFLALNPAASYMTGQVLTIDGGMVM 204
LGRY QPEEVAGL EFLALNPAASYM GQVLTIDGGMVM
Sbjct: 183 LGRYAQPEEVAGLFEFLALNPAASYMPGQVLTIDGGMVM 299
Score = 188 bits (405), Expect = 2e-046
Identities = 85/126 (67%), Positives = 88/126 (69%)
Frame = +1 / -3
Query: 79 PESITKKETTLICCPKSPVHNKGVQH*MXXXXXXXXXXXXXYITIPPSIVSTCPVI*LAA 258
P + + T CCPKSPVH *M YITIPPSIVSTCP I*LAA
Sbjct: 424 P*VLQRPRPT*FCCPKSPVHKGVQYP*MLSKSRSTSS*LKSYITIPPSIVSTCPGI*LAA 245
Query: 259 GLRARNSTNPATSSGWPYLPNGMVDKIFFXXXXXXXAVISDAMNPGAIAFTLIFLLAYSL 438
GLRARNS +PATSSGW YLPNGMVDKIFF AVISDAMNPGAIAFTLIFLLAYSL
Sbjct: 244 GLRARNSNSPATSSGWAYLPNGMVDKIFFSSSSPSSAVISDAMNPGAIAFTLIFLLAYSL 65
Query: 439 ATVFVK 456
TVFVK
Sbjct: 64 GTVFVK 47
Score = 33.6 bits (67), Expect(2) = 6e-075
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3 / -1
Query: 57 IPHARFITREYYKERDNTNLL 119
+P+A FI REYYK+RD N +
Sbjct: 447 LPNA*FIPREYYKDRDQPNFV 385
Score = 27.2 bits (53), Expect(2) = 4e-072
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -3 / +1
Query: 116 QISVVSFFVILSGNKSSM 63
+I +VS FVIL+GNKS +
Sbjct: 388 KIRLVSVFVILTGNKSGI 441
Score = 26.7 bits (52), Expect(2) = 2e-056
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -3 / +3
Query: 140 LCTGDFGQQ 114
LCTGDFGQQ
Sbjct: 363 LCTGDFGQQ 389
>gb|CF482713.1|CF482713 POL1_8_E03.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_8_E03_A002 5', mRNA sequence
Length = 712
Score = 171 bits (367), Expect(2) = 6e-061
Identities = 74/110 (67%), Positives = 84/110 (76%)
Frame = -3 / +2
Query: 950 ATKLEAPVVVVTGASRXXXXXXXXXXXXXGCKVLVNYARSSKEAEEVSKEIEASGGEAIT 771
A +LEAPV VVTGASR GCKV+VNYA+S EAEEV +EIE SGG AI+
Sbjct: 236 AARLEAPVAVVTGASRGIGRAIAVALGKAGCKVIVNYAKSGMEAEEVCREIEESGGTAIS 415
Query: 770 FGGDVSKEADVESMMKAALDKWGTIDVLVNNAGITRDTLLMRMKKSQWQD 621
F DVS EADVESMM+AA+D WG +DVLVNNAGITRD LLMRMKK+QWQ+
Sbjct: 416 FAADVSCEADVESMMRAAIDAWGALDVLVNNAGITRDALLMRMKKTQWQE 565
Score = 167 bits (359), Expect(2) = 2e-046
Identities = 80/120 (66%), Positives = 90/120 (75%)
Frame = +1 / -2
Query: 622 SCH*DFFILINNVSRVIPALFTSTSIVPHLSRAAFIIDSTSASFETSPPKVIASPPDASI 801
SCH FFI I++ SRVIPALFT TS P S AA I+DSTSAS ETS K+IA PPD+SI
Sbjct: 564 SCHWVFFIRISSASRVIPALFTRTSRAPQASIAALIMDSTSASQETSAAKLIAVPPDSSI 385
Query: 802 SLETSSASFEDRA*FTRTLHPAFPRARAVALPIPLDAPVTTTTGASSLVASFTIACSTAA 981
SL TSSAS D A*FT TLHPA P A A+ALPIPLDAPVTT TGASS A ++ ++AA
Sbjct: 384 SLHTSSASMPDLA*FTITLHPALPSATAMALPIPLDAPVTTATGASSRAAQPSMVTASAA 205
Score = 85.8 bits (181), Expect(2) = 6e-061
Identities = 34/48 (70%), Positives = 41/48 (85%)
Frame = -3 / +3
Query: 620 VIDLNLTGVFLCTQAATKVMMKKRKGKIINIASVVGLTGNVGQANYSA 477
V+D+NLTGV+ C QAA VMMK++KG+IINIASV G+ GNVGQANY A
Sbjct: 567 VVDVNLTGVYFCAQAAATVMMKRKKGRIINIASVSGIIGNVGQANYCA 710
Score = 40.9 bits (83), Expect(2) = 2e-046
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = +3 / -3
Query: 480 AIISLANIASKTNYRCNVDNFSLSLFHHYFCCSLCTKEDTSKIQINYVL 626
A++ L ++A T C+VD+ SL HH+ CSL + + ++ IN+ L
Sbjct: 707 AVVGLPDVADDTGN*CDVDDPSLLPLHHHGGCSLGAEVNAGEVDINHPL 561
>gb|BI074542.1|BI074542 IP1_16_B05.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 570
Score = 217 bits (469), Expect = 2e-055
Identities = 89/119 (74%), Positives = 108/119 (90%)
Frame = -3 / +3
Query: 566 VMMKKRKGKIINIASVVGLTGNVGQANYSAAKAGVIGFTKTVAREYASRNINVNAIAPGF 387
VMMK++KG+IINIASV G+ GNVGQANY AAKAGVIG TK +AREY RNINVNA+APG+
Sbjct: 9 VMMKRKKGRIINIASVSGIIGNVGQANYCAAKAGVIGLTKAMAREYGGRNINVNAVAPGW 188
Query: 386 IASDMTAELGEELEKKILSTIPLGRYGQPEEVAGLVEFLALNPAASYMTGQVLTIDGGM 210
+ASDMT +LG+++E+K L TIPLGR+G+PEEVAGLV FLA++PAASY+TGQVLTIDGG+
Sbjct: 189 VASDMTNKLGDDVERKALETIPLGRFGRPEEVAGLVGFLAVHPAASYITGQVLTIDGGL 365
Score = 110 bits (234), Expect = 6e-023
Identities = 50/81 (61%), Positives = 55/81 (67%)
Frame = +1 / -3
Query: 214 PPSIVSTCPVI*LAAGLRARNSTNPATSSGWPYLPNGMVDKIFFXXXXXXXAVISDAMNP 393
PPSIVSTCPV+*LAAG ARN T+PATSSG P PNGMV F V+SDA P
Sbjct: 361 PPSIVSTCPVM*LAAG*TARNPTSPATSSGLPNRPNGMVSSAFLSTSSPSLLVMSDATQP 182
Query: 394 GAIAFTLIFLLAYSLATVFVK 456
GA AFTL+FL YSLA V+
Sbjct: 181 GATAFTLMFLPPYSLAMALVR 119
>gb|BI211457.1|BI211457 IP1_57_A12.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 390
Score = 165 bits (355), Expect = 1e-039
Identities = 67/90 (74%), Positives = 82/90 (91%)
Frame = -3 / +2
Query: 479 AAKAGVIGFTKTVAREYASRNINVNAIAPGFIASDMTAELGEELEKKILSTIPLGRYGQP 300
AAKAGVIG TK +AREY RNINVNA+APG++ASDMT +LG+++E+K L TIPLGR+G+P
Sbjct: 2 AAKAGVIGLTKAMAREYGGRNINVNAVAPGWVASDMTNKLGDDVERKALETIPLGRFGRP 181
Query: 299 EEVAGLVEFLALNPAASYMTGQVLTIDGGM 210
EEVAGLV FLA++PAASY+TGQVLTIDGG+
Sbjct: 182 EEVAGLVGFLAVHPAASYITGQVLTIDGGL 271
Score = 110 bits (234), Expect = 6e-023
Identities = 50/81 (61%), Positives = 55/81 (67%)
Frame = +1 / -1
Query: 214 PPSIVSTCPVI*LAAGLRARNSTNPATSSGWPYLPNGMVDKIFFXXXXXXXAVISDAMNP 393
PPSIVSTCPV+*LAAG ARN T+PATSSG P PNGMV F V+SDA P
Sbjct: 267 PPSIVSTCPVM*LAAG*TARNPTSPATSSGLPNRPNGMVSSAFLSTSSPSLLVMSDATQP 88
Query: 394 GAIAFTLIFLLAYSLATVFVK 456
GA AFTL+FL YSLA V+
Sbjct: 87 GATAFTLMFLPPYSLAMALVR 25
>gb|BI074860.1|BI074860 IP1_16_B05.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 571
Score = 156 bits (336), Expect = 5e-037
Identities = 70/105 (66%), Positives = 78/105 (74%)
Frame = -3 / +3
Query: 950 ATKLEAPVVVVTGASRXXXXXXXXXXXXXGCKVLVNYARSSKEAEEVSKEIEASGGEAIT 771
A +LEAPV VVTGASR GCKV+VNYA+S EAEEV +EIE SGG AI+
Sbjct: 255 AARLEAPVAVVTGASRGIGRAIAVALGKAGCKVIVNYAKSGMEAEEVCREIEESGGTAIS 434
Query: 770 FGGDVSKEADVESMMKAALDKWGTIDVLVNNAGITRDTLLMRMKK 636
F DVS EADVESMM+AA+D WG +DVLVNNA ITRD LLMRMKK
Sbjct: 435 FAADVSCEADVESMMRAAIDAWGALDVLVNNAXITRDALLMRMKK 569
Score = 156 bits (336), Expect = 5e-037
Identities = 76/115 (66%), Positives = 86/115 (74%)
Frame = +1 / -1
Query: 637 FFILINNVSRVIPALFTSTSIVPHLSRAAFIIDSTSASFETSPPKVIASPPDASISLETS 816
FFI I++ SRVI ALFT TS P S AA I+DSTSAS ETS K+IA PPD+SISL TS
Sbjct: 568 FFIRISSASRVIXALFTRTSRAPQASIAALIMDSTSASQETSAAKLIAVPPDSSISLHTS 389
Query: 817 SASFEDRA*FTRTLHPAFPRARAVALPIPLDAPVTTTTGASSLVASFTIACSTAA 981
SAS D A*FT TLHPA P A A+ALPIPLDAPVTT TGASS A ++ ++AA
Sbjct: 388 SASMPDLA*FTITLHPALPSATAMALPIPLDAPVTTATGASSRAAQPSMVTASAA 224
>gb|CW235927.1|CW235927 104_691_11215305_148_37401_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11215305, DNA
sequence
Length = 716
Score = 124 bits (266), Expect(2) = 5e-035
Identities = 42/49 (85%), Positives = 43/49 (87%)
Frame = -2 / +3
Query: 555 KEKGKNYQHCICSWSYWQCWPS*L*RSQGWSDWFHKNSCQGVCKQKYQC 409
K GKNYQHCIC W YWQCWPS*L* SQGW DWFH+NSCQGVCKQKYQC
Sbjct: 441 KNAGKNYQHCICCWPYWQCWPS*L*CSQGWGDWFHENSCQGVCKQKYQC 587
Score = 107 bits (229), Expect(2) = 2e-027
Identities = 47/49 (95%), Positives = 48/49 (97%)
Frame = -3 / +1
Query: 554 KRKGKIINIASVVGLTGNVGQANYSAAKAGVIGFTKTVAREYASRNINV 408
K +GKIINIASVVGLTGNVGQANYSAAKAGVIGFTKTVAREYASRNINV
Sbjct: 442 KMQGKIINIASVVGLTGNVGQANYSAAKAGVIGFTKTVAREYASRNINV 588
Score = 101 bits (216), Expect(2) = 6e-029
Identities = 42/52 (80%), Positives = 43/52 (82%)
Frame = +3 / -3
Query: 402 SIHIDISACILPGNCFCETNHSSLGCAIISLANIASKTNYRCNVDNFSLSLF 557
S IDISACILPGNCF ETNH SLGC IISLANIASK N RCNVDNFSL +
Sbjct: 594 SSDIDISACILPGNCFRETNHPSLGCTIISLANIASKANNRCNVDNFSLHFY 439
Score = 93.2 bits (197), Expect(2) = 6e-023
Identities = 36/41 (87%), Positives = 36/41 (87%)
Frame = +2 / -2
Query: 410 H*YFCLHTPWQLFL*NQSLQPWLRYN*LGQHCQ*DQLQMQC 532
H*YFCLHTPWQLF *NQS QPWL YN*LGQHCQ* Q QMQC
Sbjct: 586 H*YFCLHTPWQLFS*NQSPQPWLHYN*LGQHCQ*GQQQMQC 464
Score = 47.8 bits (98), Expect(2) = 6e-029
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = +3 / -3
Query: 366 GSHIRCNEPWCNSIHI 413
GSHIRCNEPWCNSIH+
Sbjct: 714 GSHIRCNEPWCNSIHL 667
Score = 45.5 bits (93), Expect(2) = 5e-035
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = -2 / +3
Query: 408 ECYCTRVHCI*YDCR 364
ECYCTRVHCI*YDCR
Sbjct: 672 ECYCTRVHCI*YDCR 716
Score = 36.8 bits (74), Expect(2) = 2e-027
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = -3 / +1
Query: 416 INVNAIAPGFIASDMTA 366
+ VNAIAPGFIASDMTA
Sbjct: 664 MQVNAIAPGFIASDMTA 714
Score = 36.3 bits (73), Expect(2) = 6e-023
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +1 / -1
Query: 367 AVISDAMNPGAIAFT 411
AVISDAMNPGAIAFT
Sbjct: 713 AVISDAMNPGAIAFT 669
>gb|CF482636.1|CF482636 POL1_8_E03.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_8_E03_A002 3', mRNA sequence
Length = 503
Score = 122 bits (261), Expect(2) = 5e-028
Identities = 48/69 (69%), Positives = 63/69 (91%)
Frame = -3 / +2
Query: 416 INVNAIAPGFIASDMTAELGEELEKKILSTIPLGRYGQPEEVAGLVEFLALNPAASYMTG 237
+ VNA+APG++ASDMT +LG+++E+K L TIPLGR+G+PEEVAGLV FLA++PAASY+ G
Sbjct: 179 LQVNAVAPGWVASDMTNKLGDDVERKALETIPLGRFGRPEEVAGLVGFLAVHPAASYIPG 358
Query: 236 QVLTIDGGM 210
QVLTIDGG+
Sbjct: 359 QVLTIDGGL 385
Score = 26.7 bits (52), Expect(2) = 5e-028
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -3 / +2
Query: 449 KTVAREYASRNINV 408
K +AREY RNINV
Sbjct: 2 KAMAREYGGRNINV 43
>gb|CL153422.1|CL153422 104_337_10780704_116_31368_336 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10780704, DNA
sequence
Length = 706
Score = 73.9 bits (155), Expect(2) = 1e-027
Identities = 33/42 (78%), Positives = 33/42 (78%)
Frame = +2 / -1
Query: 119 VQNRPCTTRVFNIKCSAKVEVHQANSNLTLPSLRQL*APVQS 244
VQNRPCT IKC AKVEVHQANSNLTLPSL QL*AP S
Sbjct: 706 VQNRPCTREYNTIKC*AKVEVHQANSNLTLPSLHQL*APACS 581
Score = 73.5 bits (154), Expect(2) = 3e-027
Identities = 31/38 (81%), Positives = 33/38 (86%)
Frame = -2 / +3
Query: 234 GAYN*RRDGNVRFELA*CTSTFAEHLMLNTLVVHGRFW 121
GAYN* RDGNVRFELA*CTSTFA HLM+ +VHGRFW
Sbjct: 591 GAYN*WRDGNVRFELA*CTSTFA*HLMVLYSLVHGRFW 704
Score = 71.6 bits (150), Expect(2) = 1e-027
Identities = 28/33 (84%), Positives = 30/33 (90%)
Frame = +1 / -3
Query: 232 TCPVI*LAAGLRARNSTNPATSSGWPYLPNGMV 330
TCPVI*LAAGLRARNST+PATSSGWPYLP +
Sbjct: 512 TCPVI*LAAGLRARNSTSPATSSGWPYLPGSSI 414
Score = 71.6 bits (150), Expect(2) = 1e-026
Identities = 30/39 (76%), Positives = 32/39 (82%)
Frame = +3 / -2
Query: 120 SKIARAQQGCSTLNAQQK*KCIKLTQILHYHPSVNCKHL 236
SKIARAQ LN +QK*K IKLTQILHYHPS+NCKHL
Sbjct: 705 SKIARAQGSTIPLNVKQK*KYIKLTQILHYHPSINCKHL 589
Score = 70.7 bits (148), Expect(2) = 3e-027
Identities = 29/29 (100%), Positives = 29/29 (100%)
Frame = -3 / +1
Query: 317 GRYGQPEEVAGLVEFLALNPAASYMTGQV 231
GRYGQPEEVAGLVEFLALNPAASYMTGQV
Sbjct: 427 GRYGQPEEVAGLVEFLALNPAASYMTGQV 513
Score = 70.3 bits (147), Expect(2) = 1e-026
Identities = 26/29 (89%), Positives = 27/29 (93%)
Frame = +3 / -2
Query: 231 HLSSHIASCGVKGQELDQPCNFLWLAISP 317
HLS HIASCGVKGQELD PCNFLWLA+SP
Sbjct: 513 HLSGHIASCGVKGQELD*PCNFLWLAVSP 427
Score = 68.9 bits (144), Expect(2) = 5e-024
Identities = 30/39 (76%), Positives = 31/39 (79%)
Frame = -1 / +2
Query: 235 RCLQLTEGW*CKI*VSLMHFYFC*AFNVEHPCCARAILD 119
RCLQL EGW*CKI*VSLM+FYFC FN CARAILD
Sbjct: 590 RCLQLMEGW*CKI*VSLMYFYFCLTFNGIVLPCARAILD 706
Score = 64.3 bits (134), Expect(2) = 5e-024
Identities = 27/32 (84%), Positives = 29/32 (90%)
Frame = -1 / +2
Query: 316 GDMANQRKLQGWSSSWPLTPQLAI*LDRCLQL 221
GD ANQRKLQG SSSWPLTPQLAI* DRC++L
Sbjct: 428 GDTANQRKLQG*SSSWPLTPQLAI*PDRCVKL 523
>gb|BI076002.1|BI076002 IP1_24_B05.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 626
Score = 124 bits (266), Expect = 2e-027
Identities = 59/87 (67%), Positives = 67/87 (77%)
Frame = +1 / -1
Query: 721 AFIIDSTSASFETSPPKVIASPPDASISLETSSASFEDRA*FTRTLHPAFPRARAVALPI 900
A I+DSTSAS ETS K+IA PPD+SISL TSSAS D A*FT TLHPA P A A+ALPI
Sbjct: 470 ALIMDSTSASQETSAAKLIAVPPDSSISLHTSSASMPDLA*FTITLHPALPSATAMALPI 291
Query: 901 PLDAPVTTTTGASSLVASFTIACSTAA 981
PLDAPVTT TGASS A ++ ++AA
Sbjct: 290 PLDAPVTTATGASSRAAQPSMVTASAA 210
Score = 107 bits (228), Expect = 4e-022
Identities = 50/84 (59%), Positives = 57/84 (67%)
Frame = -3 / +1
Query: 950 ATKLEAPVVVVTGASRXXXXXXXXXXXXXGCKVLVNYARSSKEAEEVSKEIEASGGEAIT 771
A +LEAPV VVTGASR GCKV+VNYA+S EAEEV +EIE SGG AI+
Sbjct: 241 AARLEAPVAVVTGASRGIGRAIAVALGKAGCKVIVNYAKSGMEAEEVCREIEESGGTAIS 420
Query: 770 FGGDVSKEADVESMMKAALDKWGT 699
F DVS EADVESMM+A +W T
Sbjct: 421 FAADVSCEADVESMMRAVS*RWLT 492
>gb|CW079995.1|CW079995 104_405_10901967_116_32454_050 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10901967, DNA
sequence
Length = 712
Score = 84.9 bits (179), Expect(2) = 6e-027
Identities = 35/49 (71%), Positives = 41/49 (83%)
Frame = -3 / -3
Query: 548 KGKIINIASVVGLTGNVGQANYSAAKAGVIGFTKTVAREYASRNINVNA 402
+G+IINIASV G+ GNVGQANY AAKAGVIG TK +AREY RNIN ++
Sbjct: 284 QGRIINIASVSGIIGNVGQANYCAAKAGVIGLTKAMAREYGGRNINASS 138
Score = 61.1 bits (127), Expect(2) = 6e-027
Identities = 23/32 (71%), Positives = 27/32 (84%)
Frame = -3 / -3
Query: 674 GITRDTLLMRMKKSQWQDVIDLNLTGVFLCTQ 579
GITRD LLMRMKK+QWQ+V+ NLTGV+ C Q
Sbjct: 686 GITRDALLMRMKKTQWQEVVMSNLTGVYFCAQ 591
>gb|BZ351920.1|BZ351920 hm74e02.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hm74e02 5', DNA sequence
Length = 437
Score = 95.0 bits (201), Expect(2) = 1e-025
Identities = 41/46 (89%), Positives = 44/46 (95%)
Frame = -3 / +3
Query: 542 KIINIASVVGLTGNVGQANYSAAKAGVIGFTKTVAREYASRNINVN 405
+IINIASVVGLTGN QANY+AAKAGVIGFTKTVAREYASRNINV+
Sbjct: 3 RIINIASVVGLTGNAEQANYAAAKAGVIGFTKTVAREYASRNINVS 140
Score = 43.7 bits (89), Expect(2) = 1e-025
Identities = 17/29 (58%), Positives = 23/29 (79%)
Frame = -2 / +1
Query: 402 YCTRVHCI*YDCRTWRRA*EENLVNHSVR 316
Y + ++CI YDC TWRRA EEN V++S+R
Sbjct: 226 YRSWLYCIRYDC*TWRRAREENSVSYSLR 312
>gb|BZ348238.1|BZ348238 ho60b04.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ho60b04 5', DNA sequence
Length = 413
Score = 114 bits (244), Expect = 3e-024
Identities = 47/106 (44%), Positives = 73/106 (68%)
Frame = -3 / -1
Query: 584 TQAATKVMMKKRKGKIINIASVVGLTGNVGQANYSAAKAGVIGFTKTVAREYASRNINVN 405
T+ + M ++ G+IINI+SV G G GQ NYS AKAG+ GFT +A+E A++ + VN
Sbjct: 410 TKQVIEGMCERGFGRIINISSVNGQKGQFGQTNYSTAKAGIHGFTMALAQEVATKGVTVN 231
Query: 404 AIAPGFIASDMTAELGEELEKKILSTIPLGRYGQPEEVAGLVEFLA 267
++PG+I +DM + E+ +KI+S IP+ R G+PEE+A +V ++A
Sbjct: 230 TVSPGYIGTDMVRAIRPEVLEKIVSGIPVKRLGEPEEIASIVAWIA 93
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,437,409,100
Number of Sequences: 832831
Number of extensions: 22591825
Number of successful extensions: 150198
Number of sequences better than 1.0e-020: 17
length of database: 163,786,556
effective HSP length: 55
effective length of database: 117,980,851
effective search space used: 42591087211
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)