TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3923171.2.1
(570 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE356241.1|BE356241 DG1_123_D11.g1_A002 Dark Grown 1 (DG... 67 6e-037
gb|CW317120.1|CW317120 104_808_11473246_116_35854_083 Sorgh... 67 6e-037
gb|CF756574.1|CF756574 DSAF1_6_H03.b1_A011 Drought-stressed... 67 5e-036
gb|CF756649.1|CF756649 DSAF1_6_H03.g1_A011 Drought-stressed... 67 5e-036
gb|BE592839.1|BE592839 WS1_91_A12.b1_A002 Water-stressed 1 ... 67 7e-036
gb|CW425246.1|CW425246 fsbb001f136a22k0 Sorghum methylation... 67 5e-034
gb|BG933169.1|BG933169 WS1_91_A12.g1_A002 Water-stressed 1 ... 67 5e-034
gb|CW497617.1|CW497617 fsbb001f290h08f0 Sorghum methylation... 67 5e-034
gb|BG933261.1|BG933261 WS1_92_C04.g1_A002 Water-stressed 1 ... 67 5e-034
gb|CF770856.1|CF770856 DSBF1_10_F03.g1_A010 Drought-stresse... 67 6e-033
gb|BE356193.1|BE356193 DG1_123_D11.b1_A002 Dark Grown 1 (DG... 67 2e-032
gb|CF758114.1|CF758114 DSAF1_27_E06.g1_A011 Drought-stresse... 65 1e-029
>gb|BE356241.1|BE356241 DG1_123_D11.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 742
Score = 66.6 bits (139), Expect(5) = 6e-037
Identities = 27/36 (75%), Positives = 28/36 (77%)
Frame = -1 / -3
Query: 423 ML*LDKVTA*LISWPQPPSAAWRVAPPRQPPWRYLL 316
ML LDKVT *LISWPQPP AAWR AP R PPW+ L
Sbjct: 422 MLELDKVTV*LISWPQPP*AAWRAAPRRPPPWQRYL 315
Score = 58.8 bits (122), Expect(5) = 4e-030
Identities = 30/48 (62%), Positives = 33/48 (68%)
Frame = +3 / +2
Query: 306 YYRPAGSAKEVDAAELRAKLLTEAAAN*LIKQSLCRATA*VGSLGCPP 449
Y +AKEVDAAELRAKLLTEAAAN*LI + CRA A + L P
Sbjct: 305 YRPAGSAAKEVDAAELRAKLLTEAAAN*LITRLPCRARACMSWLSTTP 448
Score = 54.7 bits (113), Expect(4) = 1e-022
Identities = 24/36 (66%), Positives = 26/36 (72%)
Frame = +1 / +3
Query: 316 QQVAPRRLTRRSYAPSC*RRLRPTD*SSSHFVELQH 423
Q PRR T RS APSC RRLRPTD*S + VEL+H
Sbjct: 315 QVALPRRWTPRSCAPSCSRRLRPTD*SHGYLVELEH 422
Score = 51.0 bits (105), Expect(5) = 1e-025
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = -2 / -1
Query: 428 NSCCSSTK*LLD*SVGRSLRQQLGA*LRRVNLLGA 324
++C SST+* D*SVGRSLR+QLGA LR V+LLG+
Sbjct: 427 HACSSSTR*PCD*SVGRSLREQLGAQLRGVHLLGS 323
Score = 48.7 bits (100), Expect(5) = 6e-037
Identities = 20/23 (86%), Positives = 20/23 (86%)
Frame = -2 / -1
Query: 326 ATCWAIVAGDRVRHPRLLLSCRS 258
ATCWAIVAG RVRHPRLLL RS
Sbjct: 322 ATCWAIVAGHRVRHPRLLLLRRS 254
Score = 46.9 bits (96), Expect(5) = 1e-025
Identities = 20/28 (71%), Positives = 22/28 (78%)
Frame = -1 / -3
Query: 336 PPWRYLLGDSSR*QGPAPTPSPQLPQRQ 253
P RYLLGDSSR QGPAPTPS PQ++
Sbjct: 332 PWQRYLLGDSSRSQGPAPTPSSPPPQQR 249
Score = 46.9 bits (96), Expect(4) = 1e-022
Identities = 20/43 (46%), Positives = 23/43 (53%)
Frame = +3 / +2
Query: 201 AAAALTKRVMGKKEVNTXXXXXXXXXXWVPDPVTGYYRPAGSA 329
AAA + + K+ WVPDPVTGYYRPAGSA
Sbjct: 197 AAAVTKRVMGKKEVNTAAAAAAEEKKAWVPDPVTGYYRPAGSA 325
Score = 46.0 bits (94), Expect(5) = 6e-037
Identities = 21/30 (70%), Positives = 22/30 (73%)
Frame = -2 / -1
Query: 278 LLLSCRSGSRVHFLLAHHALGQRGRRLLLV 189
LLL SG VHFLLAHHALG R RR LL+
Sbjct: 271 LLLRRSSGCGVHFLLAHHALGHRRRRRLLL 182
Score = 41.4 bits (84), Expect(5) = 4e-030
Identities = 17/21 (80%), Positives = 20/21 (95%)
Frame = +3 / +2
Query: 189 DEKKAAAALTKRVMGKKEVNT 251
++K AAAA+TKRVMGKKEVNT
Sbjct: 182 EKKAAAAAVTKRVMGKKEVNT 244
Score = 40.9 bits (83), Expect(5) = 4e-030
Identities = 16/20 (80%), Positives = 16/20 (80%)
Frame = +2 / +1
Query: 260 CGS*GEGVGAGPCHRLLSPS 319
CG EGVGAGPC RLLSPS
Sbjct: 256 CGGGEEGVGAGPCDRLLSPS 315
Score = 39.6 bits (80), Expect(5) = 6e-037
Identities = 18/33 (54%), Positives = 22/33 (66%)
Frame = -2 / -1
Query: 506 ALGQRARGSTSANIKAGEARWTAK*ANSCCSST 408
ALGQ A STSA++KA EARW+ CSS+
Sbjct: 508 ALGQGAPRSTSADLKAREARWSGGQPTHACSSS 410
Score = 38.6 bits (78), Expect(5) = 1e-025
Identities = 18/21 (85%), Positives = 18/21 (85%)
Frame = -3 / -2
Query: 505 L*ANELGDQRARILKQEKLGG 443
L*A E DQRARILKQEKLGG
Sbjct: 507 L*AKEPRDQRARILKQEKLGG 445
Score = 32.2 bits (64), Expect(5) = 4e-030
Identities = 15/22 (68%), Positives = 16/22 (72%)
Frame = +1 / +3
Query: 442 VHLASPALIFALVDPRARWPRA 507
+HLAS AL ALVD A WPRA
Sbjct: 444 LHLASLALRSALVDRGAPWPRA 509
Score = 30.9 bits (61), Expect(4) = 1e-022
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +3 / +2
Query: 444 PPSFSCFNIRAR 479
PPSFSCF IRAR
Sbjct: 446 PPSFSCFKIRAR 481
Score = 30.9 bits (61), Expect(5) = 4e-030
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +2 / +1
Query: 74 SFHGESCIKLLRQP 115
SFHGESCIKL + P
Sbjct: 73 SFHGESCIKLCQPP 114
Score = 29.5 bits (58), Expect(4) = 1e-022
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +1 / +3
Query: 73 QLPWRELHQATASA 114
+LPWRELHQA +++
Sbjct: 72 ELPWRELHQAVSAS 113
Score = 28.6 bits (56), Expect(5) = 1e-025
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = -3 / -2
Query: 235 LPITRLVSAAAAFFSS 188
LPITRLV+AAAA F S
Sbjct: 228 LPITRLVTAAAAAFFS 181
Score = 27.2 bits (53), Expect(5) = 6e-037
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -1 / -3
Query: 102 SLMQLSPWKL 73
SLMQLSPWKL
Sbjct: 101 SLMQLSPWKL 72
Score = 24.0 bits (46), Expect(5) = 1e-025
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -2 / -1
Query: 101 A*CNSLHGS 75
A*CNSLHGS
Sbjct: 100 A*CNSLHGS 74
>gb|CW317120.1|CW317120 104_808_11473246_116_35854_083 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11473246, DNA
sequence
Length = 672
Score = 66.6 bits (139), Expect(5) = 6e-037
Identities = 27/36 (75%), Positives = 28/36 (77%)
Frame = -1 / -3
Query: 423 ML*LDKVTA*LISWPQPPSAAWRVAPPRQPPWRYLL 316
ML LDKVT *LISWPQPP AAWR AP R PPW+ L
Sbjct: 550 MLELDKVTV*LISWPQPP*AAWRAAPRRPPPWQRYL 443
Score = 58.8 bits (122), Expect(5) = 5e-030
Identities = 30/48 (62%), Positives = 33/48 (68%)
Frame = +3 / +1
Query: 306 YYRPAGSAKEVDAAELRAKLLTEAAAN*LIKQSLCRATA*VGSLGCPP 449
Y +AKEVDAAELRAKLLTEAAAN*LI + CRA A + L P
Sbjct: 433 YRPAGSAAKEVDAAELRAKLLTEAAAN*LITRLPCRARACMSWLSTTP 576
Score = 54.7 bits (113), Expect(4) = 3e-022
Identities = 24/36 (66%), Positives = 26/36 (72%)
Frame = +1 / +2
Query: 316 QQVAPRRLTRRSYAPSC*RRLRPTD*SSSHFVELQH 423
Q PRR T RS APSC RRLRPTD*S + VEL+H
Sbjct: 443 QVALPRRWTPRSCAPSCSRRLRPTD*SHGYLVELEH 550
Score = 51.0 bits (105), Expect(5) = 1e-025
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = -2 / -1
Query: 428 NSCCSSTK*LLD*SVGRSLRQQLGA*LRRVNLLGA 324
++C SST+* D*SVGRSLR+QLGA LR V+LLG+
Sbjct: 555 HACSSSTR*PCD*SVGRSLREQLGAQLRGVHLLGS 451
Score = 48.7 bits (100), Expect(5) = 6e-037
Identities = 20/23 (86%), Positives = 20/23 (86%)
Frame = -2 / -1
Query: 326 ATCWAIVAGDRVRHPRLLLSCRS 258
ATCWAIVAG RVRHPRLLL RS
Sbjct: 450 ATCWAIVAGHRVRHPRLLLLRRS 382
Score = 46.9 bits (96), Expect(4) = 3e-022
Identities = 20/43 (46%), Positives = 23/43 (53%)
Frame = +3 / +1
Query: 201 AAAALTKRVMGKKEVNTXXXXXXXXXXWVPDPVTGYYRPAGSA 329
AAA + + K+ WVPDPVTGYYRPAGSA
Sbjct: 325 AAAVTKRVMGKKEVNTAAAAAAEEKKAWVPDPVTGYYRPAGSA 453
Score = 46.9 bits (96), Expect(5) = 1e-025
Identities = 20/28 (71%), Positives = 22/28 (78%)
Frame = -1 / -3
Query: 336 PPWRYLLGDSSR*QGPAPTPSPQLPQRQ 253
P RYLLGDSSR QGPAPTPS PQ++
Sbjct: 460 PWQRYLLGDSSRSQGPAPTPSSPPPQQR 377
Score = 46.0 bits (94), Expect(5) = 6e-037
Identities = 21/30 (70%), Positives = 22/30 (73%)
Frame = -2 / -1
Query: 278 LLLSCRSGSRVHFLLAHHALGQRGRRLLLV 189
LLL SG VHFLLAHHALG R RR LL+
Sbjct: 399 LLLRRSSGCGVHFLLAHHALGHRRRRRLLL 310
Score = 41.4 bits (84), Expect(5) = 5e-030
Identities = 17/21 (80%), Positives = 20/21 (95%)
Frame = +3 / +1
Query: 189 DEKKAAAALTKRVMGKKEVNT 251
++K AAAA+TKRVMGKKEVNT
Sbjct: 310 EKKAAAAAVTKRVMGKKEVNT 372
Score = 40.9 bits (83), Expect(5) = 5e-030
Identities = 16/20 (80%), Positives = 16/20 (80%)
Frame = +2 / +3
Query: 260 CGS*GEGVGAGPCHRLLSPS 319
CG EGVGAGPC RLLSPS
Sbjct: 384 CGGGEEGVGAGPCDRLLSPS 443
Score = 39.6 bits (80), Expect(5) = 6e-037
Identities = 18/33 (54%), Positives = 22/33 (66%)
Frame = -2 / -1
Query: 506 ALGQRARGSTSANIKAGEARWTAK*ANSCCSST 408
ALGQ A STSA++KA EARW+ CSS+
Sbjct: 636 ALGQGAPRSTSADLKAREARWSGGQPTHACSSS 538
Score = 38.6 bits (78), Expect(5) = 1e-025
Identities = 18/21 (85%), Positives = 18/21 (85%)
Frame = -3 / -2
Query: 505 L*ANELGDQRARILKQEKLGG 443
L*A E DQRARILKQEKLGG
Sbjct: 635 L*AKEPRDQRARILKQEKLGG 573
Score = 32.2 bits (64), Expect(5) = 5e-030
Identities = 15/22 (68%), Positives = 16/22 (72%)
Frame = +1 / +2
Query: 442 VHLASPALIFALVDPRARWPRA 507
+HLAS AL ALVD A WPRA
Sbjct: 572 LHLASLALRSALVDRGAPWPRA 637
Score = 30.9 bits (61), Expect(4) = 3e-022
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +3 / +1
Query: 444 PPSFSCFNIRAR 479
PPSFSCF IRAR
Sbjct: 574 PPSFSCFKIRAR 609
Score = 30.9 bits (61), Expect(5) = 5e-030
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +2 / +3
Query: 74 SFHGESCIKLLRQP 115
SFHGESCIKL + P
Sbjct: 87 SFHGESCIKLCQPP 128
Score = 29.5 bits (58), Expect(4) = 3e-022
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +1 / +2
Query: 73 QLPWRELHQATASA 114
+LPWRELHQA +++
Sbjct: 86 ELPWRELHQAVSAS 127
Score = 28.6 bits (56), Expect(5) = 1e-025
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = -3 / -2
Query: 235 LPITRLVSAAAAFFSS 188
LPITRLV+AAAA F S
Sbjct: 356 LPITRLVTAAAAAFFS 309
Score = 27.2 bits (53), Expect(5) = 6e-037
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -1 / -3
Query: 102 SLMQLSPWKL 73
SLMQLSPWKL
Sbjct: 115 SLMQLSPWKL 86
Score = 24.0 bits (46), Expect(5) = 1e-025
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -2 / -1
Query: 101 A*CNSLHGS 75
A*CNSLHGS
Sbjct: 114 A*CNSLHGS 88
>gb|CF756574.1|CF756574 DSAF1_6_H03.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_6_H03_A011 5', mRNA sequence
Length = 654
Score = 66.6 bits (139), Expect(5) = 5e-036
Identities = 27/36 (75%), Positives = 28/36 (77%)
Frame = -1 / -1
Query: 423 ML*LDKVTA*LISWPQPPSAAWRVAPPRQPPWRYLL 316
ML LDKVT *LISWPQPP AAWR AP R PPW+ L
Sbjct: 375 MLELDKVTV*LISWPQPP*AAWRAAPRRPPPWQRYL 268
Score = 57.9 bits (120), Expect(4) = 1e-023
Identities = 30/48 (62%), Positives = 33/48 (68%)
Frame = +3 / +3
Query: 306 YYRPAGSAKEVDAAELRAKLLTEAAAN*LIKQSLCRATA*VGSLGCPP 449
Y +AKEVDAAELRAKLLTEAAAN*LI + CRA A + L P
Sbjct: 258 YRPAGSAAKEVDAAELRAKLLTEAAAN*LITRLPCRARACMRWLSTTP 401
Score = 54.7 bits (113), Expect(6) = 3e-030
Identities = 24/36 (66%), Positives = 26/36 (72%)
Frame = +1 / +1
Query: 316 QQVAPRRLTRRSYAPSC*RRLRPTD*SSSHFVELQH 423
Q PRR T RS APSC RRLRPTD*S + VEL+H
Sbjct: 268 QVALPRRWTPRSCAPSCSRRLRPTD*SHGYLVELEH 375
Score = 51.5 bits (106), Expect(5) = 1e-024
Identities = 24/36 (66%), Positives = 31/36 (86%)
Frame = -2 / -2
Query: 431 ANSCCSSTK*LLD*SVGRSLRQQLGA*LRRVNLLGA 324
+++C SST+* D*SVGRSLR+QLGA LR V+LLG+
Sbjct: 383 SHACSSSTR*PCD*SVGRSLREQLGAQLRGVHLLGS 276
Score = 46.9 bits (96), Expect(4) = 1e-023
Identities = 20/43 (46%), Positives = 23/43 (53%)
Frame = +3 / +3
Query: 201 AAAALTKRVMGKKEVNTXXXXXXXXXXWVPDPVTGYYRPAGSA 329
AAA + + K+ WVPDPVTGYYRPAGSA
Sbjct: 150 AAAVTKRVMGKKEVNTAAAAAAEEKKAWVPDPVTGYYRPAGSA 278
Score = 46.0 bits (94), Expect(5) = 5e-036
Identities = 21/30 (70%), Positives = 22/30 (73%)
Frame = -2 / -2
Query: 278 LLLSCRSGSRVHFLLAHHALGQRGRRLLLV 189
LLL SG VHFLLAHHALG R RR LL+
Sbjct: 224 LLLRRSSGCGVHFLLAHHALGHRRRRRLLL 135
Score = 45.1 bits (92), Expect(5) = 5e-036
Identities = 19/23 (82%), Positives = 19/23 (82%)
Frame = -2 / -2
Query: 326 ATCWAIVAGDRVRHPRLLLSCRS 258
ATCWAIVAG RV HPRLLL RS
Sbjct: 275 ATCWAIVAGHRVWHPRLLLLRRS 207
Score = 42.3 bits (86), Expect(5) = 1e-024
Identities = 19/28 (67%), Positives = 21/28 (75%)
Frame = -1 / -1
Query: 336 PPWRYLLGDSSR*QGPAPTPSPQLPQRQ 253
P RYLLGDSSR QG APTPS PQ++
Sbjct: 285 PWQRYLLGDSSRSQGLAPTPSSPPPQQR 202
Score = 41.4 bits (84), Expect(6) = 3e-030
Identities = 17/21 (80%), Positives = 20/21 (95%)
Frame = +3 / +3
Query: 189 DEKKAAAALTKRVMGKKEVNT 251
++K AAAA+TKRVMGKKEVNT
Sbjct: 135 EKKAAAAAVTKRVMGKKEVNT 197
Score = 40.0 bits (81), Expect(5) = 5e-036
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = -2 / -2
Query: 506 ALGQRARGSTSANIKAGEARWTAK*ANSCCSST 408
ALGQ A STSA++KA EARW+ + CSS+
Sbjct: 461 ALGQGAPRSTSADLKAREARWSGGQPSHACSSS 363
Score = 38.6 bits (78), Expect(5) = 1e-024
Identities = 18/21 (85%), Positives = 18/21 (85%)
Frame = -3 / -3
Query: 505 L*ANELGDQRARILKQEKLGG 443
L*A E DQRARILKQEKLGG
Sbjct: 460 L*AKEPRDQRARILKQEKLGG 398
Score = 37.3 bits (75), Expect(6) = 3e-030
Identities = 15/20 (75%), Positives = 15/20 (75%)
Frame = +2 / +2
Query: 260 CGS*GEGVGAGPCHRLLSPS 319
CG EGVGA PC RLLSPS
Sbjct: 209 CGGGEEGVGARPCDRLLSPS 268
Score = 32.2 bits (64), Expect(6) = 3e-030
Identities = 15/22 (68%), Positives = 16/22 (72%)
Frame = +1 / +1
Query: 442 VHLASPALIFALVDPRARWPRA 507
+HLAS AL ALVD A WPRA
Sbjct: 397 LHLASLALRSALVDRGAPWPRA 462
Score = 32.2 bits (64), Expect(6) = 3e-030
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2 / +2
Query: 56 LITNPASFHGESCIKLLRQP 115
L T+ SFHGESCIKL + P
Sbjct: 8 LSTHS*SFHGESCIKLCQPP 67
Score = 30.9 bits (61), Expect(4) = 1e-023
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +3 / +3
Query: 444 PPSFSCFNIRAR 479
PPSFSCF IRAR
Sbjct: 399 PPSFSCFKIRAR 434
Score = 29.5 bits (58), Expect(4) = 1e-023
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +1 / +1
Query: 73 QLPWRELHQATASA 114
+LPWRELHQA +++
Sbjct: 25 ELPWRELHQAVSAS 66
Score = 28.6 bits (56), Expect(5) = 1e-024
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = -3 / -3
Query: 235 LPITRLVSAAAAFFSS 188
LPITRLV+AAAA F S
Sbjct: 181 LPITRLVTAAAAAFFS 134
Score = 27.2 bits (53), Expect(5) = 5e-036
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -1 / -1
Query: 102 SLMQLSPWKL 73
SLMQLSPWKL
Sbjct: 54 SLMQLSPWKL 25
Score = 24.0 bits (46), Expect(5) = 1e-024
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -2 / -2
Query: 101 A*CNSLHGS 75
A*CNSLHGS
Sbjct: 53 A*CNSLHGS 27
Score = 22.1 bits (42), Expect(6) = 3e-030
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +1 / +1
Query: 301 PATIAQQVA 327
PATIAQQVA
Sbjct: 250 PATIAQQVA 276
>gb|CF756649.1|CF756649 DSAF1_6_H03.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_6_H03_A011 3', mRNA sequence
Length = 654
Score = 66.6 bits (139), Expect(5) = 5e-036
Identities = 27/36 (75%), Positives = 28/36 (77%)
Frame = -1 / -3
Query: 423 ML*LDKVTA*LISWPQPPSAAWRVAPPRQPPWRYLL 316
ML LDKVT *LISWPQPP AAWR AP R PPW+ L
Sbjct: 352 MLELDKVTV*LISWPQPP*AAWRAAPRRPPPWQRYL 245
Score = 57.9 bits (120), Expect(4) = 1e-023
Identities = 30/48 (62%), Positives = 33/48 (68%)
Frame = +3 / +1
Query: 306 YYRPAGSAKEVDAAELRAKLLTEAAAN*LIKQSLCRATA*VGSLGCPP 449
Y +AKEVDAAELRAKLLTEAAAN*LI + CRA A + L P
Sbjct: 235 YRPAGSAAKEVDAAELRAKLLTEAAAN*LITRLPCRARACMRWLSTTP 378
Score = 54.7 bits (113), Expect(6) = 6e-030
Identities = 24/36 (66%), Positives = 26/36 (72%)
Frame = +1 / +2
Query: 316 QQVAPRRLTRRSYAPSC*RRLRPTD*SSSHFVELQH 423
Q PRR T RS APSC RRLRPTD*S + VEL+H
Sbjct: 245 QVALPRRWTPRSCAPSCSRRLRPTD*SHGYLVELEH 352
Score = 51.5 bits (106), Expect(5) = 1e-024
Identities = 24/36 (66%), Positives = 31/36 (86%)
Frame = -2 / -1
Query: 431 ANSCCSSTK*LLD*SVGRSLRQQLGA*LRRVNLLGA 324
+++C SST+* D*SVGRSLR+QLGA LR V+LLG+
Sbjct: 360 SHACSSSTR*PCD*SVGRSLREQLGAQLRGVHLLGS 253
Score = 46.9 bits (96), Expect(4) = 1e-023
Identities = 20/43 (46%), Positives = 23/43 (53%)
Frame = +3 / +1
Query: 201 AAAALTKRVMGKKEVNTXXXXXXXXXXWVPDPVTGYYRPAGSA 329
AAA + + K+ WVPDPVTGYYRPAGSA
Sbjct: 127 AAAVTKRVMGKKEVNTAAAAAAEEKKAWVPDPVTGYYRPAGSA 255
Score = 46.0 bits (94), Expect(5) = 5e-036
Identities = 21/30 (70%), Positives = 22/30 (73%)
Frame = -2 / -1
Query: 278 LLLSCRSGSRVHFLLAHHALGQRGRRLLLV 189
LLL SG VHFLLAHHALG R RR LL+
Sbjct: 201 LLLRRSSGCGVHFLLAHHALGHRRRRRLLL 112
Score = 45.1 bits (92), Expect(5) = 5e-036
Identities = 19/23 (82%), Positives = 19/23 (82%)
Frame = -2 / -1
Query: 326 ATCWAIVAGDRVRHPRLLLSCRS 258
ATCWAIVAG RV HPRLLL RS
Sbjct: 252 ATCWAIVAGHRVWHPRLLLLRRS 184
Score = 42.3 bits (86), Expect(5) = 1e-024
Identities = 19/28 (67%), Positives = 21/28 (75%)
Frame = -1 / -3
Query: 336 PPWRYLLGDSSR*QGPAPTPSPQLPQRQ 253
P RYLLGDSSR QG APTPS PQ++
Sbjct: 262 PWQRYLLGDSSRSQGLAPTPSSPPPQQR 179
Score = 41.4 bits (84), Expect(6) = 6e-030
Identities = 17/21 (80%), Positives = 20/21 (95%)
Frame = +3 / +1
Query: 189 DEKKAAAALTKRVMGKKEVNT 251
++K AAAA+TKRVMGKKEVNT
Sbjct: 112 EKKAAAAAVTKRVMGKKEVNT 174
Score = 40.0 bits (81), Expect(5) = 5e-036
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = -2 / -1
Query: 506 ALGQRARGSTSANIKAGEARWTAK*ANSCCSST 408
ALGQ A STSA++KA EARW+ + CSS+
Sbjct: 438 ALGQGAPRSTSADLKAREARWSGGQPSHACSSS 340
Score = 38.6 bits (78), Expect(5) = 1e-024
Identities = 18/21 (85%), Positives = 18/21 (85%)
Frame = -3 / -2
Query: 505 L*ANELGDQRARILKQEKLGG 443
L*A E DQRARILKQEKLGG
Sbjct: 437 L*AKEPRDQRARILKQEKLGG 375
Score = 37.3 bits (75), Expect(6) = 6e-030
Identities = 15/20 (75%), Positives = 15/20 (75%)
Frame = +2 / +3
Query: 260 CGS*GEGVGAGPCHRLLSPS 319
CG EGVGA PC RLLSPS
Sbjct: 186 CGGGEEGVGARPCDRLLSPS 245
Score = 32.2 bits (64), Expect(6) = 6e-030
Identities = 15/22 (68%), Positives = 16/22 (72%)
Frame = +1 / +2
Query: 442 VHLASPALIFALVDPRARWPRA 507
+HLAS AL ALVD A WPRA
Sbjct: 374 LHLASLALRSALVDRGAPWPRA 439
Score = 30.9 bits (61), Expect(4) = 1e-023
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +3 / +1
Query: 444 PPSFSCFNIRAR 479
PPSFSCF IRAR
Sbjct: 376 PPSFSCFKIRAR 411
Score = 30.9 bits (61), Expect(6) = 6e-030
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +2 / +3
Query: 74 SFHGESCIKLLRQP 115
SFHGESCIKL + P
Sbjct: 3 SFHGESCIKLCQPP 44
Score = 29.5 bits (58), Expect(4) = 1e-023
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +1 / +2
Query: 73 QLPWRELHQATASA 114
+LPWRELHQA +++
Sbjct: 2 ELPWRELHQAVSAS 43
Score = 28.6 bits (56), Expect(5) = 1e-024
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = -3 / -2
Query: 235 LPITRLVSAAAAFFSS 188
LPITRLV+AAAA F S
Sbjct: 158 LPITRLVTAAAAAFFS 111
Score = 27.2 bits (53), Expect(5) = 5e-036
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -1 / -3
Query: 102 SLMQLSPWKL 73
SLMQLSPWKL
Sbjct: 31 SLMQLSPWKL 2
Score = 24.0 bits (46), Expect(5) = 1e-024
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -2 / -1
Query: 101 A*CNSLHGS 75
A*CNSLHGS
Sbjct: 30 A*CNSLHGS 4
Score = 22.1 bits (42), Expect(6) = 6e-030
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +1 / +2
Query: 301 PATIAQQVA 327
PATIAQQVA
Sbjct: 227 PATIAQQVA 253
>gb|BE592839.1|BE592839 WS1_91_A12.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 538
Score = 66.6 bits (139), Expect(5) = 7e-036
Identities = 27/36 (75%), Positives = 28/36 (77%)
Frame = -1 / -1
Query: 423 ML*LDKVTA*LISWPQPPSAAWRVAPPRQPPWRYLL 316
ML LDKVT *LISWPQPP AAWR AP R PPW+ L
Sbjct: 469 MLELDKVTV*LISWPQPP*AAWRAAPRRPPPWQRYL 362
Score = 58.8 bits (122), Expect(5) = 5e-030
Identities = 30/48 (62%), Positives = 33/48 (68%)
Frame = +3 / +1
Query: 306 YYRPAGSAKEVDAAELRAKLLTEAAAN*LIKQSLCRATA*VGSLGCPP 449
Y +AKEVDAAELRAKLLTEAAAN*LI + CRA A + L P
Sbjct: 352 YRPAGSAAKEVDAAELRAKLLTEAAAN*LITRLPCRARACMSWLSTTP 495
Score = 51.0 bits (105), Expect(5) = 4e-024
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = -2 / -2
Query: 428 NSCCSSTK*LLD*SVGRSLRQQLGA*LRRVNLLGA 324
++C SST+* D*SVGRSLR+QLGA LR V+LLG+
Sbjct: 474 HACSSSTR*PCD*SVGRSLREQLGAQLRGVHLLGS 370
Score = 48.7 bits (100), Expect(5) = 7e-036
Identities = 20/23 (86%), Positives = 20/23 (86%)
Frame = -2 / -2
Query: 326 ATCWAIVAGDRVRHPRLLLSCRS 258
ATCWAIVAG RVRHPRLLL RS
Sbjct: 369 ATCWAIVAGHRVRHPRLLLLRRS 301
Score = 46.9 bits (96), Expect(5) = 4e-024
Identities = 20/28 (71%), Positives = 22/28 (78%)
Frame = -1 / -1
Query: 336 PPWRYLLGDSSR*QGPAPTPSPQLPQRQ 253
P RYLLGDSSR QGPAPTPS PQ++
Sbjct: 379 PWQRYLLGDSSRSQGPAPTPSSPPPQQR 296
Score = 46.0 bits (94), Expect(5) = 7e-036
Identities = 21/30 (70%), Positives = 22/30 (73%)
Frame = -2 / -2
Query: 278 LLLSCRSGSRVHFLLAHHALGQRGRRLLLV 189
LLL SG VHFLLAHHALG R RR LL+
Sbjct: 318 LLLRRSSGCGVHFLLAHHALGHRRRRRLLL 229
Score = 41.4 bits (84), Expect(5) = 5e-030
Identities = 17/21 (80%), Positives = 20/21 (95%)
Frame = +3 / +1
Query: 189 DEKKAAAALTKRVMGKKEVNT 251
++K AAAA+TKRVMGKKEVNT
Sbjct: 229 EKKAAAAAVTKRVMGKKEVNT 291
Score = 40.9 bits (83), Expect(5) = 5e-030
Identities = 16/20 (80%), Positives = 16/20 (80%)
Frame = +2 / +3
Query: 260 CGS*GEGVGAGPCHRLLSPS 319
CG EGVGAGPC RLLSPS
Sbjct: 303 CGGGEEGVGAGPCDRLLSPS 362
Score = 34.5 bits (69), Expect(5) = 7e-036
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = -3 / -3
Query: 484 DQRARILKQEKLGG 443
DQRARILKQEKLGG
Sbjct: 533 DQRARILKQEKLGG 492
Score = 31.8 bits (63), Expect(5) = 4e-024
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -2 / -2
Query: 482 STSANIKAGEARWTAK*ANSCCSST 408
STSA++KA EARW+ CSS+
Sbjct: 531 STSADLKAREARWSGGQPTHACSSS 457
Score = 30.9 bits (61), Expect(5) = 5e-030
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +3 / +1
Query: 444 PPSFSCFNIRAR 479
PPSFSCF IRAR
Sbjct: 493 PPSFSCFKIRAR 528
Score = 30.9 bits (61), Expect(5) = 5e-030
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +2 / +3
Query: 74 SFHGESCIKLLRQP 115
SFHGESCIKL + P
Sbjct: 120 SFHGESCIKLCQPP 161
Score = 28.6 bits (56), Expect(5) = 4e-024
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = -3 / -3
Query: 235 LPITRLVSAAAAFFSS 188
LPITRLV+AAAA F S
Sbjct: 275 LPITRLVTAAAAAFFS 228
Score = 27.2 bits (53), Expect(5) = 7e-036
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -1 / -1
Query: 102 SLMQLSPWKL 73
SLMQLSPWKL
Sbjct: 148 SLMQLSPWKL 119
Score = 24.0 bits (46), Expect(5) = 4e-024
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -2 / -2
Query: 101 A*CNSLHGS 75
A*CNSLHGS
Sbjct: 147 A*CNSLHGS 121
>gb|CW425246.1|CW425246 fsbb001f136a22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f136a22, DNA
sequence
Length = 643
Score = 66.6 bits (139), Expect(4) = 5e-034
Identities = 27/36 (75%), Positives = 28/36 (77%)
Frame = -1 / +3
Query: 423 ML*LDKVTA*LISWPQPPSAAWRVAPPRQPPWRYLL 316
ML LDKVT *LISWPQPP AAWR AP R PPW+ L
Sbjct: 333 MLELDKVTV*LISWPQPP*AAWRAAPRRPPPWQRYL 440
Score = 58.8 bits (122), Expect(4) = 5e-026
Identities = 30/48 (62%), Positives = 33/48 (68%)
Frame = +3 / -2
Query: 306 YYRPAGSAKEVDAAELRAKLLTEAAAN*LIKQSLCRATA*VGSLGCPP 449
Y +AKEVDAAELRAKLLTEAAAN*LI + CRA A + L P
Sbjct: 450 YRPAGSAAKEVDAAELRAKLLTEAAAN*LITRLPCRARACMSWLSTTP 307
Score = 51.0 bits (105), Expect(4) = 1e-023
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = -2 / +1
Query: 428 NSCCSSTK*LLD*SVGRSLRQQLGA*LRRVNLLGA 324
++C SST+* D*SVGRSLR+QLGA LR V+LLG+
Sbjct: 328 HACSSSTR*PCD*SVGRSLREQLGAQLRGVHLLGS 432
Score = 48.7 bits (100), Expect(4) = 5e-034
Identities = 20/23 (86%), Positives = 20/23 (86%)
Frame = -2 / +1
Query: 326 ATCWAIVAGDRVRHPRLLLSCRS 258
ATCWAIVAG RVRHPRLLL RS
Sbjct: 433 ATCWAIVAGHRVRHPRLLLLRRS 501
Score = 46.9 bits (96), Expect(4) = 1e-023
Identities = 20/28 (71%), Positives = 22/28 (78%)
Frame = -1 / +3
Query: 336 PPWRYLLGDSSR*QGPAPTPSPQLPQRQ 253
P RYLLGDSSR QGPAPTPS PQ++
Sbjct: 423 PWQRYLLGDSSRSQGPAPTPSSPPPQQR 506
Score = 46.0 bits (94), Expect(4) = 5e-034
Identities = 21/30 (70%), Positives = 22/30 (73%)
Frame = -2 / +1
Query: 278 LLLSCRSGSRVHFLLAHHALGQRGRRLLLV 189
LLL SG VHFLLAHHALG R RR LL+
Sbjct: 484 LLLRRSSGCGVHFLLAHHALGHRRRRRLLL 573
Score = 41.4 bits (84), Expect(4) = 5e-026
Identities = 17/21 (80%), Positives = 20/21 (95%)
Frame = +3 / -2
Query: 189 DEKKAAAALTKRVMGKKEVNT 251
++K AAAA+TKRVMGKKEVNT
Sbjct: 573 EKKAAAAAVTKRVMGKKEVNT 511
Score = 40.9 bits (83), Expect(4) = 5e-026
Identities = 16/20 (80%), Positives = 16/20 (80%)
Frame = +2 / -1
Query: 260 CGS*GEGVGAGPCHRLLSPS 319
CG EGVGAGPC RLLSPS
Sbjct: 499 CGGGEEGVGAGPCDRLLSPS 440
Score = 39.6 bits (80), Expect(4) = 5e-034
Identities = 18/33 (54%), Positives = 22/33 (66%)
Frame = -2 / +1
Query: 506 ALGQRARGSTSANIKAGEARWTAK*ANSCCSST 408
ALGQ A STSA++KA EARW+ CSS+
Sbjct: 247 ALGQGAPRSTSADLKAREARWSGGQPTHACSSS 345
Score = 38.6 bits (78), Expect(4) = 1e-023
Identities = 18/21 (85%), Positives = 18/21 (85%)
Frame = -3 / +2
Query: 505 L*ANELGDQRARILKQEKLGG 443
L*A E DQRARILKQEKLGG
Sbjct: 248 L*AKEPRDQRARILKQEKLGG 310
Score = 32.2 bits (64), Expect(4) = 5e-026
Identities = 15/22 (68%), Positives = 16/22 (72%)
Frame = +1 / -3
Query: 442 VHLASPALIFALVDPRARWPRA 507
+HLAS AL ALVD A WPRA
Sbjct: 311 LHLASLALRSALVDRGAPWPRA 246
Score = 28.6 bits (56), Expect(4) = 1e-023
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = -3 / +2
Query: 235 LPITRLVSAAAAFFSS 188
LPITRLV+AAAA F S
Sbjct: 527 LPITRLVTAAAAAFFS 574
>gb|BG933169.1|BG933169 WS1_91_A12.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 609
Score = 66.6 bits (139), Expect(4) = 5e-034
Identities = 27/36 (75%), Positives = 28/36 (77%)
Frame = -1 / -2
Query: 423 ML*LDKVTA*LISWPQPPSAAWRVAPPRQPPWRYLL 316
ML LDKVT *LISWPQPP AAWR AP R PPW+ L
Sbjct: 284 MLELDKVTV*LISWPQPP*AAWRAAPRRPPPWQRYL 177
Score = 58.8 bits (122), Expect(4) = 5e-026
Identities = 30/48 (62%), Positives = 33/48 (68%)
Frame = +3 / +2
Query: 306 YYRPAGSAKEVDAAELRAKLLTEAAAN*LIKQSLCRATA*VGSLGCPP 449
Y +AKEVDAAELRAKLLTEAAAN*LI + CRA A + L P
Sbjct: 167 YRPAGSAAKEVDAAELRAKLLTEAAAN*LITRLPCRARACMSWLSTTP 310
Score = 51.0 bits (105), Expect(4) = 1e-023
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = -2 / -3
Query: 428 NSCCSSTK*LLD*SVGRSLRQQLGA*LRRVNLLGA 324
++C SST+* D*SVGRSLR+QLGA LR V+LLG+
Sbjct: 289 HACSSSTR*PCD*SVGRSLREQLGAQLRGVHLLGS 185
Score = 48.7 bits (100), Expect(4) = 5e-034
Identities = 20/23 (86%), Positives = 20/23 (86%)
Frame = -2 / -3
Query: 326 ATCWAIVAGDRVRHPRLLLSCRS 258
ATCWAIVAG RVRHPRLLL RS
Sbjct: 184 ATCWAIVAGHRVRHPRLLLLRRS 116
Score = 46.9 bits (96), Expect(4) = 1e-023
Identities = 20/28 (71%), Positives = 22/28 (78%)
Frame = -1 / -2
Query: 336 PPWRYLLGDSSR*QGPAPTPSPQLPQRQ 253
P RYLLGDSSR QGPAPTPS PQ++
Sbjct: 194 PWQRYLLGDSSRSQGPAPTPSSPPPQQR 111
Score = 46.0 bits (94), Expect(4) = 5e-034
Identities = 21/30 (70%), Positives = 22/30 (73%)
Frame = -2 / -3
Query: 278 LLLSCRSGSRVHFLLAHHALGQRGRRLLLV 189
LLL SG VHFLLAHHALG R RR LL+
Sbjct: 133 LLLRRSSGCGVHFLLAHHALGHRRRRRLLL 44
Score = 41.4 bits (84), Expect(4) = 5e-026
Identities = 17/21 (80%), Positives = 20/21 (95%)
Frame = +3 / +2
Query: 189 DEKKAAAALTKRVMGKKEVNT 251
++K AAAA+TKRVMGKKEVNT
Sbjct: 44 EKKAAAAAVTKRVMGKKEVNT 106
Score = 40.9 bits (83), Expect(4) = 5e-026
Identities = 16/20 (80%), Positives = 16/20 (80%)
Frame = +2 / +1
Query: 260 CGS*GEGVGAGPCHRLLSPS 319
CG EGVGAGPC RLLSPS
Sbjct: 118 CGGGEEGVGAGPCDRLLSPS 177
Score = 39.6 bits (80), Expect(4) = 5e-034
Identities = 18/33 (54%), Positives = 22/33 (66%)
Frame = -2 / -3
Query: 506 ALGQRARGSTSANIKAGEARWTAK*ANSCCSST 408
ALGQ A STSA++KA EARW+ CSS+
Sbjct: 370 ALGQGAPRSTSADLKAREARWSGGQPTHACSSS 272
Score = 38.6 bits (78), Expect(4) = 1e-023
Identities = 18/21 (85%), Positives = 18/21 (85%)
Frame = -3 / -1
Query: 505 L*ANELGDQRARILKQEKLGG 443
L*A E DQRARILKQEKLGG
Sbjct: 369 L*AKEPRDQRARILKQEKLGG 307
Score = 32.2 bits (64), Expect(4) = 5e-026
Identities = 15/22 (68%), Positives = 16/22 (72%)
Frame = +1 / +3
Query: 442 VHLASPALIFALVDPRARWPRA 507
+HLAS AL ALVD A WPRA
Sbjct: 306 LHLASLALRSALVDRGAPWPRA 371
Score = 28.6 bits (56), Expect(4) = 1e-023
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = -3 / -1
Query: 235 LPITRLVSAAAAFFSS 188
LPITRLV+AAAA F S
Sbjct: 90 LPITRLVTAAAAAFFS 43
>gb|CW497617.1|CW497617 fsbb001f290h08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f290h08, DNA
sequence
Length = 581
Score = 66.6 bits (139), Expect(4) = 5e-034
Identities = 27/36 (75%), Positives = 28/36 (77%)
Frame = -1 / +2
Query: 423 ML*LDKVTA*LISWPQPPSAAWRVAPPRQPPWRYLL 316
ML LDKVT *LISWPQPP AAWR AP R PPW+ L
Sbjct: 161 MLELDKVTV*LISWPQPP*AAWRAAPRRPPPWQRYL 268
Score = 58.8 bits (122), Expect(4) = 5e-026
Identities = 30/48 (62%), Positives = 33/48 (68%)
Frame = +3 / -1
Query: 306 YYRPAGSAKEVDAAELRAKLLTEAAAN*LIKQSLCRATA*VGSLGCPP 449
Y +AKEVDAAELRAKLLTEAAAN*LI + CRA A + L P
Sbjct: 278 YRPAGSAAKEVDAAELRAKLLTEAAAN*LITRLPCRARACMSWLSTTP 135
Score = 51.0 bits (105), Expect(4) = 1e-023
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = -2 / +3
Query: 428 NSCCSSTK*LLD*SVGRSLRQQLGA*LRRVNLLGA 324
++C SST+* D*SVGRSLR+QLGA LR V+LLG+
Sbjct: 156 HACSSSTR*PCD*SVGRSLREQLGAQLRGVHLLGS 260
Score = 48.7 bits (100), Expect(4) = 5e-034
Identities = 20/23 (86%), Positives = 20/23 (86%)
Frame = -2 / +3
Query: 326 ATCWAIVAGDRVRHPRLLLSCRS 258
ATCWAIVAG RVRHPRLLL RS
Sbjct: 261 ATCWAIVAGHRVRHPRLLLLRRS 329
Score = 46.9 bits (96), Expect(4) = 1e-023
Identities = 20/28 (71%), Positives = 22/28 (78%)
Frame = -1 / +2
Query: 336 PPWRYLLGDSSR*QGPAPTPSPQLPQRQ 253
P RYLLGDSSR QGPAPTPS PQ++
Sbjct: 251 PWQRYLLGDSSRSQGPAPTPSSPPPQQR 334
Score = 46.0 bits (94), Expect(4) = 5e-034
Identities = 21/30 (70%), Positives = 22/30 (73%)
Frame = -2 / +3
Query: 278 LLLSCRSGSRVHFLLAHHALGQRGRRLLLV 189
LLL SG VHFLLAHHALG R RR LL+
Sbjct: 312 LLLRRSSGCGVHFLLAHHALGHRRRRRLLL 401
Score = 41.4 bits (84), Expect(4) = 5e-026
Identities = 17/21 (80%), Positives = 20/21 (95%)
Frame = +3 / -1
Query: 189 DEKKAAAALTKRVMGKKEVNT 251
++K AAAA+TKRVMGKKEVNT
Sbjct: 401 EKKAAAAAVTKRVMGKKEVNT 339
Score = 40.9 bits (83), Expect(4) = 5e-026
Identities = 16/20 (80%), Positives = 16/20 (80%)
Frame = +2 / -3
Query: 260 CGS*GEGVGAGPCHRLLSPS 319
CG EGVGAGPC RLLSPS
Sbjct: 327 CGGGEEGVGAGPCDRLLSPS 268
Score = 39.6 bits (80), Expect(4) = 5e-034
Identities = 18/33 (54%), Positives = 22/33 (66%)
Frame = -2 / +3
Query: 506 ALGQRARGSTSANIKAGEARWTAK*ANSCCSST 408
ALGQ A STSA++KA EARW+ CSS+
Sbjct: 75 ALGQGAPRSTSADLKAREARWSGGQPTHACSSS 173
Score = 38.6 bits (78), Expect(4) = 1e-023
Identities = 18/21 (85%), Positives = 18/21 (85%)
Frame = -3 / +1
Query: 505 L*ANELGDQRARILKQEKLGG 443
L*A E DQRARILKQEKLGG
Sbjct: 76 L*AKEPRDQRARILKQEKLGG 138
Score = 32.2 bits (64), Expect(4) = 5e-026
Identities = 15/22 (68%), Positives = 16/22 (72%)
Frame = +1 / -2
Query: 442 VHLASPALIFALVDPRARWPRA 507
+HLAS AL ALVD A WPRA
Sbjct: 139 LHLASLALRSALVDRGAPWPRA 74
Score = 28.6 bits (56), Expect(4) = 1e-023
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = -3 / +1
Query: 235 LPITRLVSAAAAFFSS 188
LPITRLV+AAAA F S
Sbjct: 355 LPITRLVTAAAAAFFS 402
>gb|BG933261.1|BG933261 WS1_92_C04.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 556
Score = 66.6 bits (139), Expect(4) = 5e-034
Identities = 27/36 (75%), Positives = 28/36 (77%)
Frame = -1 / -1
Query: 423 ML*LDKVTA*LISWPQPPSAAWRVAPPRQPPWRYLL 316
ML LDKVT *LISWPQPP AAWR AP R PPW+ L
Sbjct: 256 MLELDKVTV*LISWPQPP*AAWRAAPRRPPPWQRYL 149
Score = 58.8 bits (122), Expect(4) = 5e-026
Identities = 30/48 (62%), Positives = 33/48 (68%)
Frame = +3 / +1
Query: 306 YYRPAGSAKEVDAAELRAKLLTEAAAN*LIKQSLCRATA*VGSLGCPP 449
Y +AKEVDAAELRAKLLTEAAAN*LI + CRA A + L P
Sbjct: 139 YRPAGSAAKEVDAAELRAKLLTEAAAN*LITRLPCRARACMSWLSTTP 282
Score = 51.0 bits (105), Expect(4) = 1e-023
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = -2 / -2
Query: 428 NSCCSSTK*LLD*SVGRSLRQQLGA*LRRVNLLGA 324
++C SST+* D*SVGRSLR+QLGA LR V+LLG+
Sbjct: 261 HACSSSTR*PCD*SVGRSLREQLGAQLRGVHLLGS 157
Score = 48.7 bits (100), Expect(4) = 5e-034
Identities = 20/23 (86%), Positives = 20/23 (86%)
Frame = -2 / -2
Query: 326 ATCWAIVAGDRVRHPRLLLSCRS 258
ATCWAIVAG RVRHPRLLL RS
Sbjct: 156 ATCWAIVAGHRVRHPRLLLLRRS 88
Score = 46.9 bits (96), Expect(4) = 1e-023
Identities = 20/28 (71%), Positives = 22/28 (78%)
Frame = -1 / -1
Query: 336 PPWRYLLGDSSR*QGPAPTPSPQLPQRQ 253
P RYLLGDSSR QGPAPTPS PQ++
Sbjct: 166 PWQRYLLGDSSRSQGPAPTPSSPPPQQR 83
Score = 46.0 bits (94), Expect(4) = 5e-034
Identities = 21/30 (70%), Positives = 22/30 (73%)
Frame = -2 / -2
Query: 278 LLLSCRSGSRVHFLLAHHALGQRGRRLLLV 189
LLL SG VHFLLAHHALG R RR LL+
Sbjct: 105 LLLRRSSGCGVHFLLAHHALGHRRRRRLLL 16
Score = 41.4 bits (84), Expect(4) = 5e-026
Identities = 17/21 (80%), Positives = 20/21 (95%)
Frame = +3 / +1
Query: 189 DEKKAAAALTKRVMGKKEVNT 251
++K AAAA+TKRVMGKKEVNT
Sbjct: 16 EKKAAAAAVTKRVMGKKEVNT 78
Score = 40.9 bits (83), Expect(4) = 5e-026
Identities = 16/20 (80%), Positives = 16/20 (80%)
Frame = +2 / +3
Query: 260 CGS*GEGVGAGPCHRLLSPS 319
CG EGVGAGPC RLLSPS
Sbjct: 90 CGGGEEGVGAGPCDRLLSPS 149
Score = 39.6 bits (80), Expect(4) = 5e-034
Identities = 18/33 (54%), Positives = 22/33 (66%)
Frame = -2 / -2
Query: 506 ALGQRARGSTSANIKAGEARWTAK*ANSCCSST 408
ALGQ A STSA++KA EARW+ CSS+
Sbjct: 342 ALGQGAPRSTSADLKAREARWSGGQPTHACSSS 244
Score = 38.6 bits (78), Expect(4) = 1e-023
Identities = 18/21 (85%), Positives = 18/21 (85%)
Frame = -3 / -3
Query: 505 L*ANELGDQRARILKQEKLGG 443
L*A E DQRARILKQEKLGG
Sbjct: 341 L*AKEPRDQRARILKQEKLGG 279
Score = 32.2 bits (64), Expect(4) = 5e-026
Identities = 15/22 (68%), Positives = 16/22 (72%)
Frame = +1 / +2
Query: 442 VHLASPALIFALVDPRARWPRA 507
+HLAS AL ALVD A WPRA
Sbjct: 278 LHLASLALRSALVDRGAPWPRA 343
Score = 28.6 bits (56), Expect(4) = 1e-023
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = -3 / -3
Query: 235 LPITRLVSAAAAFFSS 188
LPITRLV+AAAA F S
Sbjct: 62 LPITRLVTAAAAAFFS 15
>gb|CF770856.1|CF770856 DSBF1_10_F03.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_10_F03_A010 3', mRNA sequence
Length = 595
Score = 66.6 bits (139), Expect(4) = 6e-033
Identities = 27/36 (75%), Positives = 28/36 (77%)
Frame = -1 / -3
Query: 423 ML*LDKVTA*LISWPQPPSAAWRVAPPRQPPWRYLL 316
ML LDKVT *LISWPQPP AAWR AP R PPW+ L
Sbjct: 281 MLELDKVTV*LISWPQPP*AAWRAAPRRPPPWQRYL 174
Score = 58.8 bits (122), Expect(4) = 6e-025
Identities = 30/48 (62%), Positives = 33/48 (68%)
Frame = +3 / +2
Query: 306 YYRPAGSAKEVDAAELRAKLLTEAAAN*LIKQSLCRATA*VGSLGCPP 449
Y +AKEVDAAELRAKLLTEAAAN*LI + CRA A + L P
Sbjct: 164 YRPAGSAAKEVDAAELRAKLLTEAAAN*LITRLPCRARACMSWLSTTP 307
Score = 51.0 bits (105), Expect(4) = 3e-022
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = -2 / -1
Query: 428 NSCCSSTK*LLD*SVGRSLRQQLGA*LRRVNLLGA 324
++C SST+* D*SVGRSLR+QLGA LR V+LLG+
Sbjct: 286 HACSSSTR*PCD*SVGRSLREQLGAQLRGVHLLGS 182
Score = 46.0 bits (94), Expect(4) = 6e-033
Identities = 21/30 (70%), Positives = 22/30 (73%)
Frame = -2 / -1
Query: 278 LLLSCRSGSRVHFLLAHHALGQRGRRLLLV 189
LLL SG VHFLLAHHALG R RR LL+
Sbjct: 130 LLLRRSSGCGVHFLLAHHALGHRRRRRLLL 41
Score = 45.1 bits (92), Expect(4) = 6e-033
Identities = 19/23 (82%), Positives = 19/23 (82%)
Frame = -2 / -1
Query: 326 ATCWAIVAGDRVRHPRLLLSCRS 258
ATCWAIVAG RV HPRLLL RS
Sbjct: 181 ATCWAIVAGHRVWHPRLLLLRRS 113
Score = 42.3 bits (86), Expect(4) = 3e-022
Identities = 19/28 (67%), Positives = 21/28 (75%)
Frame = -1 / -3
Query: 336 PPWRYLLGDSSR*QGPAPTPSPQLPQRQ 253
P RYLLGDSSR QG APTPS PQ++
Sbjct: 191 PWQRYLLGDSSRSQGLAPTPSSPPPQQR 108
Score = 41.4 bits (84), Expect(4) = 6e-025
Identities = 17/21 (80%), Positives = 20/21 (95%)
Frame = +3 / +2
Query: 189 DEKKAAAALTKRVMGKKEVNT 251
++K AAAA+TKRVMGKKEVNT
Sbjct: 41 EKKAAAAAVTKRVMGKKEVNT 103
Score = 39.6 bits (80), Expect(4) = 6e-033
Identities = 18/33 (54%), Positives = 22/33 (66%)
Frame = -2 / -1
Query: 506 ALGQRARGSTSANIKAGEARWTAK*ANSCCSST 408
ALGQ A STSA++KA EARW+ CSS+
Sbjct: 367 ALGQGAPRSTSADLKAREARWSGGQPTHACSSS 269
Score = 38.6 bits (78), Expect(4) = 3e-022
Identities = 18/21 (85%), Positives = 18/21 (85%)
Frame = -3 / -2
Query: 505 L*ANELGDQRARILKQEKLGG 443
L*A E DQRARILKQEKLGG
Sbjct: 366 L*AKEPRDQRARILKQEKLGG 304
Score = 37.3 bits (75), Expect(4) = 6e-025
Identities = 15/20 (75%), Positives = 15/20 (75%)
Frame = +2 / +1
Query: 260 CGS*GEGVGAGPCHRLLSPS 319
CG EGVGA PC RLLSPS
Sbjct: 115 CGGGEEGVGARPCDRLLSPS 174
Score = 32.2 bits (64), Expect(4) = 6e-025
Identities = 15/22 (68%), Positives = 16/22 (72%)
Frame = +1 / +3
Query: 442 VHLASPALIFALVDPRARWPRA 507
+HLAS AL ALVD A WPRA
Sbjct: 303 LHLASLALRSALVDRGAPWPRA 368
Score = 28.6 bits (56), Expect(4) = 3e-022
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = -3 / -2
Query: 235 LPITRLVSAAAAFFSS 188
LPITRLV+AAAA F S
Sbjct: 87 LPITRLVTAAAAAFFS 40
>gb|BE356193.1|BE356193 DG1_123_D11.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 632
Score = 66.6 bits (139), Expect(5) = 2e-032
Identities = 27/36 (75%), Positives = 28/36 (77%)
Frame = -1 / -1
Query: 423 ML*LDKVTA*LISWPQPPSAAWRVAPPRQPPWRYLL 316
ML LDKVT *LISWPQPP AAWR AP R PPW+ L
Sbjct: 584 MLELDKVTV*LISWPQPP*AAWRAAPRRPPPWQRYL 477
Score = 58.8 bits (122), Expect(5) = 2e-027
Identities = 30/48 (62%), Positives = 33/48 (68%)
Frame = +3 / +2
Query: 306 YYRPAGSAKEVDAAELRAKLLTEAAAN*LIKQSLCRATA*VGSLGCPP 449
Y +AKEVDAAELRAKLLTEAAAN*LI + CRA A + L P
Sbjct: 467 YRPAGSAAKEVDAAELRAKLLTEAAAN*LITRLPCRARACMSWLSTTP 610
Score = 48.7 bits (100), Expect(5) = 2e-032
Identities = 20/23 (86%), Positives = 20/23 (86%)
Frame = -2 / -2
Query: 326 ATCWAIVAGDRVRHPRLLLSCRS 258
ATCWAIVAG RVRHPRLLL RS
Sbjct: 484 ATCWAIVAGHRVRHPRLLLLRRS 416
Score = 46.0 bits (94), Expect(5) = 2e-032
Identities = 21/30 (70%), Positives = 22/30 (73%)
Frame = -2 / -2
Query: 278 LLLSCRSGSRVHFLLAHHALGQRGRRLLLV 189
LLL SG VHFLLAHHALG R RR LL+
Sbjct: 433 LLLRRSSGCGVHFLLAHHALGHRRRRRLLL 344
Score = 41.4 bits (84), Expect(5) = 2e-027
Identities = 17/21 (80%), Positives = 20/21 (95%)
Frame = +3 / +2
Query: 189 DEKKAAAALTKRVMGKKEVNT 251
++K AAAA+TKRVMGKKEVNT
Sbjct: 344 EKKAAAAAVTKRVMGKKEVNT 406
Score = 40.9 bits (83), Expect(5) = 2e-027
Identities = 16/20 (80%), Positives = 16/20 (80%)
Frame = +2 / +1
Query: 260 CGS*GEGVGAGPCHRLLSPS 319
CG EGVGAGPC RLLSPS
Sbjct: 418 CGGGEEGVGAGPCDRLLSPS 477
Score = 30.9 bits (61), Expect(5) = 2e-027
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +2 / +1
Query: 74 SFHGESCIKLLRQP 115
SFHGESCIKL + P
Sbjct: 235 SFHGESCIKLCQPP 276
Score = 27.2 bits (53), Expect(5) = 2e-032
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -1 / -1
Query: 102 SLMQLSPWKL 73
SLMQLSPWKL
Sbjct: 263 SLMQLSPWKL 234
Score = 23.5 bits (45), Expect(5) = 2e-032
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2 / -2
Query: 467 IKAGEARWTAK*ANSCCSST 408
+KA EARW+ CSS+
Sbjct: 631 LKAREARWSGGQPTHACSSS 572
Score = 22.6 bits (43), Expect(5) = 2e-027
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +3 / +2
Query: 444 PPSFSCF 464
PPSFSCF
Sbjct: 608 PPSFSCF 628
>gb|CF758114.1|CF758114 DSAF1_27_E06.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_27_E06_A011 3', mRNA sequence
Length = 555
Score = 64.8 bits (135), Expect(4) = 1e-029
Identities = 26/36 (72%), Positives = 27/36 (75%)
Frame = -1 / -2
Query: 423 ML*LDKVTA*LISWPQPPSAAWRVAPPRQPPWRYLL 316
ML LDKVT *LISWPQPP AAWR P R PPW+ L
Sbjct: 215 MLELDKVTV*LISWPQPP*AAWRATPRRPPPWQRYL 108
Score = 58.8 bits (122), Expect(4) = 6e-027
Identities = 30/48 (62%), Positives = 33/48 (68%)
Frame = +3 / +2
Query: 306 YYRPAGSAKEVDAAELRAKLLTEAAAN*LIKQSLCRATA*VGSLGCPP 449
Y +AKEVDAAELRAKLLTEAAAN*LI + CRA A + L P
Sbjct: 98 YRPAGSAAKEVDAAELRAKLLTEAAAN*LITRLPCRARACMSWLSTTP 241
Score = 46.0 bits (94), Expect(4) = 6e-027
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3 / +2
Query: 282 WVPDPVTGYYRPAGSA 329
WVPDPVTGYYRPAGSA
Sbjct: 71 WVPDPVTGYYRPAGSA 118
Score = 45.1 bits (92), Expect(4) = 1e-029
Identities = 19/23 (82%), Positives = 19/23 (82%)
Frame = -2 / -3
Query: 326 ATCWAIVAGDRVRHPRLLLSCRS 258
ATCWAIVAG RV HPRLLL RS
Sbjct: 115 ATCWAIVAGHRVWHPRLLLLRRS 47
Score = 39.6 bits (80), Expect(4) = 1e-029
Identities = 18/33 (54%), Positives = 22/33 (66%)
Frame = -2 / -3
Query: 506 ALGQRARGSTSANIKAGEARWTAK*ANSCCSST 408
ALGQ A STSA++KA EARW+ CSS+
Sbjct: 301 ALGQGAPRSTSADLKAREARWSGGQPTHACSSS 203
Score = 39.6 bits (80), Expect(4) = 6e-027
Identities = 16/21 (76%), Positives = 16/21 (76%)
Frame = +2 / +1
Query: 215 DQARDGQEGSEHGCRCGS*GE 277
DQARDGQEGSEH RC GE
Sbjct: 1 DQARDGQEGSEHRSRCCGGGE 63
Score = 36.8 bits (74), Expect(4) = 1e-029
Identities = 16/21 (76%), Positives = 16/21 (76%)
Frame = -2 / -3
Query: 278 LLLSCRSGSRVHFLLAHHALG 216
LLL SG VHFLLAHHALG
Sbjct: 64 LLLRRSSGCGVHFLLAHHALG 2
Score = 32.2 bits (64), Expect(4) = 6e-027
Identities = 15/22 (68%), Positives = 16/22 (72%)
Frame = +1 / +3
Query: 442 VHLASPALIFALVDPRARWPRA 507
+HLAS AL ALVD A WPRA
Sbjct: 237 LHLASLALRSALVDRGAPWPRA 302
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 589,376,005
Number of Sequences: 832831
Number of extensions: 8530823
Number of successful extensions: 170637
Number of sequences better than 1.0e-020: 12
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 16271925768
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)