TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3866402.2.1
(406 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW225022.1|CW225022 104_662_11204129_116_37199_071 Sorgh... 207 2e-064
gb|BZ334804.1|BZ334804 hx93f03.b1 WGS-SbicolorF (JM107 adap... 188 4e-049
gb|BM329477.1|BM329477 PIC1_38_E07.g1_A002 Pathogen-infecte... 148 4e-035
gb|CD425420.1|CD425420 SA1_12_E03.b1_A002 Salicylic acid-tr... 148 4e-035
gb|CN137452.1|CN137452 OX1_57_H05.b1_A002 Oxidatively-stres... 146 2e-034
gb|BG464515.1|BG464515 EM1_70_F11.g1_A002 Embryo 1 (EM1) So... 143 2e-033
gb|CL175625.1|CL175625 104_381_10892573_148_31764_173 Sorgh... 141 4e-033
gb|CW148277.1|CW148277 104_542_11140330_148_35005_033 Sorgh... 141 4e-033
gb|CW311756.1|CW311756 104_801_11470397_116_36281_025 Sorgh... 141 4e-033
gb|CW190177.1|CW190177 104_611_11174363_148_36746_036 Sorgh... 137 1e-031
gb|BE918255.1|BE918255 OV1_1_A10.g1_A002 Ovary 1 (OV1) Sorg... 125 4e-028
gb|BE918364.1|BE918364 OV1_2_G01.g1_A002 Ovary 1 (OV1) Sorg... 125 4e-028
gb|BE918448.1|BE918448 OV1_3_H04.g1_A002 Ovary 1 (OV1) Sorg... 125 4e-028
gb|BE918460.1|BE918460 OV1_4_B02.g1_A002 Ovary 1 (OV1) Sorg... 125 4e-028
gb|BF656415.1|BF656415 FM1_45_E11.g2_A003 Floral-Induced Me... 125 4e-028
gb|BG054070.1|BG054070 OV2_3_A09.g1_A002 Ovary 2 (OV2) Sorg... 125 4e-028
gb|BM330076.1|BM330076 PIC1_46_H07.g1_A002 Pathogen-infecte... 125 4e-028
gb|CF771524.1|CF771524 DSBF1_20_E12.g1_A010 Drought-stresse... 125 4e-028
gb|BM328497.1|BM328497 PIC1_29_H10.g1_A002 Pathogen-infecte... 124 5e-028
gb|CN147785.1|CN147785 WOUND1_52_D08.b1_A002 Wounded leaves... 122 2e-027
gb|CW168326.1|CW168326 104_577_11154083_148_36496_034 Sorgh... 122 4e-027
gb|CF073421.1|CF073421 FE1_10_A03.b1_A002 Iron-deficient se... 122 4e-027
gb|CW299977.1|CW299977 104_783_11463402_116_36252_077 Sorgh... 116 2e-025
gb|CW047497.1|CW047497 104_285_10512756_115_30217 Sorghum m... 113 1e-024
gb|BF656703.1|BF656703 OV2_19_G06.g1_A002 Ovary 2 (OV2) Sor... 113 1e-024
gb|BG355877.1|BG355877 EM1_17_G07.g1_A002 Embryo 1 (EM1) So... 113 1e-024
gb|CD426513.1|CD426513 SA1_21_D06.b1_A002 Salicylic acid-tr... 113 1e-024
gb|CD426607.1|CD426607 SA1_21_D06.g1_A002 Salicylic acid-tr... 113 1e-024
gb|CF074085.1|CF074085 FE1_21_G07.b1_A002 Iron-deficient se... 113 1e-024
gb|BM325630.1|BM325630 PIC1_46_H07.b1_A002 Pathogen-infecte... 95 1e-022
gb|CW334498.1|CW334498 104_833_11482533_148_36071_095 Sorgh... 103 1e-021
gb|CD428205.1|CD428205 ETH1_28_F10.b1_A002 Ethylene-treated... 101 4e-021
gb|BG054083.1|BG054083 OV2_3_C07.g1_A002 Ovary 2 (OV2) Sorg... 90 5e-021
>gb|CW225022.1|CW225022 104_662_11204129_116_37199_071 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11204129, DNA
sequence
Length = 682
Score = 207 bits (447), Expect(3) = 2e-064
Identities = 90/99 (90%), Positives = 95/99 (95%)
Frame = -3 / -2
Query: 386 QISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARLLFNQAF 207
QISQASKPVIKA GLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQ RLLFNQAF
Sbjct: 561 QISQASKPVIKACGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQTRLLFNQAF 382
Query: 206 SRGLQISRILAGGKKQR*C*FRKHSYTRVRQGISSRMIV 90
SRGLQISRILAGGKKQ *C*+RKHS ++VRQGISSR++V
Sbjct: 381 SRGLQISRILAGGKKQS*C*YRKHS*SQVRQGISSRIVV 265
Score = 205 bits (442), Expect(2) = 6e-062
Identities = 88/98 (89%), Positives = 90/98 (91%)
Frame = +1 / +2
Query: 91 TIILELIPCLTRVYECFLN*HYLCFLPPAKIREI*RPRLNA*LKSNLAWNSETNGNHAST 270
T ILELIPCLT YECFL *H LCFLPPAKIREI* PRLNA*LKSNL WNSETNGNHAST
Sbjct: 266 TTILELIPCLTCDYECFLY*HQLCFLPPAKIREI*SPRLNA*LKSNLVWNSETNGNHAST 445
Query: 271 ATGTKMTIPIRYSYPLERAFTDPQSPNALMTGLLA*DI 384
ATGTKMTIPIRYSYPLERAFTDP SP+AL+TGLLA*DI
Sbjct: 446 ATGTKMTIPIRYSYPLERAFTDPHSPHALITGLLA*DI 559
Score = 180 bits (387), Expect(2) = 2e-053
Identities = 74/98 (75%), Positives = 81/98 (82%)
Frame = +3 / +1
Query: 93 NHPGANPLPNPCVRMFPELTLSLLLAASQDPRDLKASAKCLIKKQSRLELRDKWEPCQHS 272
N+PGANPL N +RMFP LT +L LAASQDPRDLK SAKCLIK+QSRLEL DK EPCQH
Sbjct: 268 NNPGANPLSNL*LRMFPVLTSTLFLAASQDPRDLKPSAKCLIKEQSRLELGDKREPCQHR 447
Query: 273 HRXEDDNPHQVLIPPREGLHGSPEPKRLDDRFTCLRYL 386
H EDD+PHQV +PPREGLH SP+P LD RFTCLRYL
Sbjct: 448 HWDEDDDPHQVFVPPREGLHRSPQPTCLDHRFTCLRYL 561
Score = 173 bits (372), Expect(2) = 4e-051
Identities = 76/98 (77%), Positives = 82/98 (83%)
Frame = -2 / -1
Query: 384 DISSK*TGHQGVWALGIREGPL*GV*VPDGDCHLRXGGCAGMVPICLGVPGEIAF*SGI* 205
DISSK*TG QG+WA+GI EGPL GV +PDGD HLR G AGMVP+CL VP EIA *SGI*
Sbjct: 559 DISSK*TGDQGMWAVGICEGPLEGVRIPDGDRHLRPSGGAGMVPVCLRVPDEIAL*SGI* 380
Query: 204 PRPSNLSDLGWRQEAKIMLIQETFVHTG*ARD*LQDDC 91
PR SNLSDLGWRQE K+ML+QETFV TG* RD*LQD C
Sbjct: 379 PRASNLSDLGWRQETKLMLVQETFVITG*TRD*LQDCC 266
Score = 157 bits (338), Expect(2) = 1e-040
Identities = 65/89 (73%), Positives = 73/89 (82%)
Frame = -1 / -3
Query: 391 FCRYLKQVNRSSRRLGSGDP*RPSLGGMST*WGLSSSXRWLCWHGSHLSRSSRRDCFLIR 212
+ RYLKQVNR SR +G GD *RPS GG +T*WG SSS +W CWHGS LS SSRRDC LIR
Sbjct: 566 YTRYLKQVNR*SRHVGCGDL*RPSRGGTNT*WGSSSSSQWRCWHGSRLSPSSRRDCSLIR 387
Query: 211 HLAEAFKSLGSWLAARSKDNVNSGNIRTH 125
HLAE FKSLGSWLAAR+K +V++GNIR H
Sbjct: 386 HLAEGFKSLGSWLAARNKVDVSTGNIRNH 300
Score = 138 bits (296), Expect(2) = 4e-039
Identities = 67/98 (68%), Positives = 69/98 (70%)
Frame = +2 / +3
Query: 92 QSSWS*SLA*PVCTNVS*INIIFASCRQPRSERFEGLG*MPD*KAISPGTPRQMGTMPAX 271
Q SWS*SL *PV TNVS NI F SCRQPRSERFE LG*MPD*+AIS GT RQ GTMPA
Sbjct: 267 QQSWS*SLV*PVITNVSCTNINFVSCRQPRSERFEALG*MPD*RAISSGTRRQTGTMPAP 446
Query: 272 XXXXXXXXXXGTHTP*RGPSRIPRAQTP**PVYLLEIS 385
G TP RGPS+IP A P* PVYLLEIS
Sbjct: 447 PLGRR*RSPSGIRTPSRGPSQIPTAHMP*SPVYLLEIS 560
Score = 53.8 bits (111), Expect(3) = 2e-064
Identities = 21/23 (91%), Positives = 21/23 (91%)
Frame = -2 / -2
Query: 69 CWRNCKAADAFRVLAVYTRLVFL 1
CWRN KAADAFRVL VYTRLVFL
Sbjct: 258 CWRNSKAADAFRVLVVYTRLVFL 190
Score = 52.8 bits (109), Expect(2) = 6e-062
Identities = 20/23 (86%), Positives = 23/23 (100%)
Frame = +1 / +1
Query: 1 KKNQPCVYSQDSESISSLTIPPT 69
KKNQPCVY+++SESISSLTIPPT
Sbjct: 190 KKNQPCVYNENSESISSLTIPPT 258
Score = 49.6 bits (102), Expect(2) = 2e-053
Identities = 20/24 (83%), Positives = 20/24 (83%)
Frame = +3 / +3
Query: 3 EKPALCIQPRL*KHQQPYNSSNKH 74
EKPALCIQ L*KHQQPY SSN H
Sbjct: 192 EKPALCIQREL*KHQQPYYSSNTH 263
Score = 48.7 bits (100), Expect(2) = 4e-051
Identities = 20/22 (90%), Positives = 20/22 (90%)
Frame = -3 / -3
Query: 68 VGGIVRLLMLSESWLYTQGWFF 3
VGGIVRLLMLSE LYTQGWFF
Sbjct: 257 VGGIVRLLMLSEFSLYTQGWFF 192
Score = 43.2 bits (88), Expect(2) = 4e-039
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = +2 / +2
Query: 2 RKTSLVYTAKTLKASAALQFLQ 67
RKTSLVYT +TLKASAAL FLQ
Sbjct: 191 RKTSLVYTTRTLKASAALLFLQ 256
Score = 29.0 bits (57), Expect(2) = 1e-040
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = -1 / -1
Query: 40 FQSLGCIHKAGFS 2
FQS CIHKAGFS
Sbjct: 229 FQSSRCIHKAGFS 191
Score = 24.0 bits (46), Expect(3) = 2e-064
Identities = 6/7 (85%), Positives = 7/7 (100%)
Frame = -2 / -1
Query: 96 DCCTWVM 76
DCCTWV+
Sbjct: 274 DCCTWVL 254
>gb|BZ334804.1|BZ334804 hx93f03.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hx93f03 5', DNA sequence
Length = 633
Score = 188 bits (404), Expect = 5e-047
Identities = 81/85 (95%), Positives = 82/85 (96%)
Frame = -3 / -3
Query: 386 QISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARLLFNQAF 207
QISQASKPVIKA GLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQ RLLFNQAF
Sbjct: 265 QISQASKPVIKACGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQTRLLFNQAF 86
Query: 206 SRGLQISRILAGGKKQR*C*FRKHS 132
SRGLQISRILAGGKKQ *C*+RKHS
Sbjct: 85 SRGLQISRILAGGKKQS*C*YRKHS 11
Score = 185 bits (398), Expect(2) = 4e-049
Identities = 78/85 (91%), Positives = 80/85 (94%)
Frame = +1 / +3
Query: 130 YECFLN*HYLCFLPPAKIREI*RPRLNA*LKSNLAWNSETNGNHASTATGTKMTIPIRYS 309
YECFL *H LCFLPPAKIREI* PRLNA*LKSNL WNSETNGNHASTATGTKMTIPIRYS
Sbjct: 9 YECFLY*HQLCFLPPAKIREI*SPRLNA*LKSNLVWNSETNGNHASTATGTKMTIPIRYS 188
Query: 310 YPLERAFTDPQSPNALMTGLLA*DI 384
YPLERAFTDP SP+AL+TGLLA*DI
Sbjct: 189 YPLERAFTDPHSPHALITGLLA*DI 263
Score = 162 bits (348), Expect(2) = 3e-041
Identities = 66/86 (76%), Positives = 72/86 (83%)
Frame = +3 / +2
Query: 129 VRMFPELTLSLLLAASQDPRDLKASAKCLIKKQSRLELRDKWEPCQHSHRXEDDNPHQVL 308
+RMFP LT +L LAASQDPRDLK SAKCLIK+QSRLEL DK EPCQH H EDD+PHQV
Sbjct: 8 LRMFPVLTSTLFLAASQDPRDLKPSAKCLIKEQSRLELGDKREPCQHRHWDEDDDPHQVF 187
Query: 309 IPPREGLHGSPEPKRLDDRFTCLRYL 386
+PPREGLH SP+P LD RFTCLRYL
Sbjct: 188 VPPREGLHRSPQPTCLDHRFTCLRYL 265
Score = 157 bits (338), Expect = 6e-038
Identities = 65/89 (73%), Positives = 73/89 (82%)
Frame = -1 / -1
Query: 391 FCRYLKQVNRSSRRLGSGDP*RPSLGGMST*WGLSSSXRWLCWHGSHLSRSSRRDCFLIR 212
+ RYLKQVNR SR +G GD *RPS GG +T*WG SSS +W CWHGS LS SSRRDC LIR
Sbjct: 270 YTRYLKQVNR*SRHVGCGDL*RPSRGGTNT*WGSSSSSQWRCWHGSRLSPSSRRDCSLIR 91
Query: 211 HLAEAFKSLGSWLAARSKDNVNSGNIRTH 125
HLAE FKSLGSWLAAR+K +V++GNIR H
Sbjct: 90 HLAEGFKSLGSWLAARNKVDVSTGNIRNH 4
Score = 155 bits (332), Expect(2) = 8e-038
Identities = 67/87 (77%), Positives = 73/87 (83%)
Frame = -2 / -2
Query: 384 DISSK*TGHQGVWALGIREGPL*GV*VPDGDCHLRXGGCAGMVPICLGVPGEIAF*SGI* 205
DISSK*TG QG+WA+GI EGPL GV +PDGD HLR G AGMVP+CL VP EIA *SGI*
Sbjct: 263 DISSK*TGDQGMWAVGICEGPLEGVRIPDGDRHLRPSGGAGMVPVCLRVPDEIAL*SGI* 84
Query: 204 PRPSNLSDLGWRQEAKIMLIQETFVHT 124
PR SNLSDLGWRQE K+ML+QETFV T
Sbjct: 83 PRASNLSDLGWRQETKLMLVQETFVIT 3
Score = 122 bits (262), Expect(2) = 5e-028
Identities = 59/88 (67%), Positives = 61/88 (69%)
Frame = +2 / +1
Query: 122 PVCTNVS*INIIFASCRQPRSERFEGLG*MPD*KAISPGTPRQMGTMPAXXXXXXXXXXX 301
PV TNVS NI F SCRQPRSERFE LG*MPD*+AIS GT RQ GTMPA
Sbjct: 1 PVITNVSCTNINFVSCRQPRSERFEALG*MPD*RAISSGTRRQTGTMPAPPLGRR*RSPS 180
Query: 302 GTHTP*RGPSRIPRAQTP**PVYLLEIS 385
G TP RGPS+IP A P* PVYLLEIS
Sbjct: 181 GIRTPSRGPSQIPTAHMP*SPVYLLEIS 264
Score = 30.9 bits (61), Expect(2) = 4e-049
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2 / +3
Query: 365 VYLLEISAEWPILW 406
V L+E+ AEWPILW
Sbjct: 456 VILVEVPAEWPILW 497
Score = 27.2 bits (53), Expect(2) = 3e-041
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +3 / +1
Query: 378 RYLQNGPSC 404
RYLQNGPSC
Sbjct: 469 RYLQNGPSC 495
Score = 23.1 bits (44), Expect(2) = 8e-038
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2 / -3
Query: 405 HRMGHSADISSK*T 364
HRMGHSA S+ T
Sbjct: 496 HRMGHSAGTSTSIT 455
Score = 22.1 bits (42), Expect(2) = 5e-028
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +1 / +2
Query: 385 CRMAHPV 405
CRMAHPV
Sbjct: 476 CRMAHPV 496
>gb|BM329477.1|BM329477 PIC1_38_E07.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 511
Score = 148 bits (318), Expect = 4e-035
Identities = 57/83 (68%), Positives = 70/83 (84%)
Frame = -3 / +1
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW IL I+QA KP+ + GLWGSV+AL+R YE +MG+++F P+ +LAWFPFVSEFQ R+
Sbjct: 22 TGWGILLIAQACKPLARHVGLWGSVRALARAYEIIMGVLLFTPITILAWFPFVSEFQTRM 201
Query: 224 LFNQAFSRGLQISRILAGGKKQR 156
LFNQAFSRGLQISRIL G KK+R
Sbjct: 202 LFNQAFSRGLQISRILGGQKKER 270
>gb|CD425420.1|CD425420 SA1_12_E03.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_12_E03_A002 3', mRNA sequence
Length = 555
Score = 148 bits (318), Expect = 4e-035
Identities = 57/83 (68%), Positives = 70/83 (84%)
Frame = -3 / +3
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW IL I+QA KP+ + GLWGSV+AL+R YE +MG+++F P+ +LAWFPFVSEFQ R+
Sbjct: 96 TGWGILLIAQACKPLARHVGLWGSVRALARAYEIIMGVLLFTPITILAWFPFVSEFQTRM 275
Query: 224 LFNQAFSRGLQISRILAGGKKQR 156
LFNQAFSRGLQISRIL G KK+R
Sbjct: 276 LFNQAFSRGLQISRILGGQKKER 344
>gb|CN137452.1|CN137452 OX1_57_H05.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_57_H05_A002 3', mRNA sequence
Length = 732
Score = 146 bits (313), Expect = 2e-034
Identities = 56/83 (67%), Positives = 69/83 (83%)
Frame = -3 / +2
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW IL I+Q KP+ + GLWGSV+AL+R YE +MG+++F P+ +LAWFPFVSEFQ R+
Sbjct: 356 TGWGILLIAQPCKPLARHVGLWGSVRALARAYEIIMGVLLFTPITILAWFPFVSEFQTRM 535
Query: 224 LFNQAFSRGLQISRILAGGKKQR 156
LFNQAFSRGLQISRIL G KK+R
Sbjct: 536 LFNQAFSRGLQISRILGGQKKER 604
>gb|BG464515.1|BG464515 EM1_70_F11.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 423
Score = 143 bits (306), Expect = 2e-033
Identities = 56/83 (67%), Positives = 67/83 (80%)
Frame = -3 / +1
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
+GW +L I+Q + I GLWGSVKAL+RGYE +MG+++F P+A LAWFPFVSEFQ R+
Sbjct: 16 SGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIAFLAWFPFVSEFQTRM 195
Query: 224 LFNQAFSRGLQISRILAGGKKQR 156
LFNQAFSRGLQISRIL G KK R
Sbjct: 196 LFNQAFSRGLQISRILGGHKKDR 264
>gb|CL175625.1|CL175625 104_381_10892573_148_31764_173 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10892573, DNA
sequence
Length = 745
Score = 141 bits (303), Expect = 4e-033
Identities = 55/79 (69%), Positives = 68/79 (86%)
Frame = -3 / +3
Query: 392 ILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARLLFNQ 213
ILQI+QA KP+ + GLWGSV+AL+R YE +MG+++F P+ +LAWFPFVSEFQ R+LFNQ
Sbjct: 330 ILQIAQACKPLARHVGLWGSVRALARAYEIIMGVLLFTPITILAWFPFVSEFQTRMLFNQ 509
Query: 212 AFSRGLQISRILAGGKKQR 156
AFSRGLQISRIL G KK+R
Sbjct: 510 AFSRGLQISRILGGQKKER 566
>gb|CW148277.1|CW148277 104_542_11140330_148_35005_033 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11140330, DNA
sequence
Length = 721
Score = 141 bits (303), Expect = 4e-033
Identities = 55/79 (69%), Positives = 68/79 (86%)
Frame = -3 / +1
Query: 392 ILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARLLFNQ 213
ILQI+QA KP+ + GLWGSV+AL+R YE +MG+++F P+ +LAWFPFVSEFQ R+LFNQ
Sbjct: 121 ILQIAQACKPLARHVGLWGSVRALARAYEIIMGVLLFTPITILAWFPFVSEFQTRMLFNQ 300
Query: 212 AFSRGLQISRILAGGKKQR 156
AFSRGLQISRIL G KK+R
Sbjct: 301 AFSRGLQISRILGGQKKER 357
>gb|CW311756.1|CW311756 104_801_11470397_116_36281_025 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11470397, DNA
sequence
Length = 730
Score = 141 bits (303), Expect = 4e-033
Identities = 55/79 (69%), Positives = 68/79 (86%)
Frame = -3 / +1
Query: 392 ILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARLLFNQ 213
ILQI+QA KP+ + GLWGSV+AL+R YE +MG+++F P+ +LAWFPFVSEFQ R+LFNQ
Sbjct: 61 ILQIAQACKPLARHVGLWGSVRALARAYEIIMGVLLFTPITILAWFPFVSEFQTRMLFNQ 240
Query: 212 AFSRGLQISRILAGGKKQR 156
AFSRGLQISRIL G KK+R
Sbjct: 241 AFSRGLQISRILGGQKKER 297
>gb|CW190177.1|CW190177 104_611_11174363_148_36746_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11174363, DNA
sequence
Length = 703
Score = 137 bits (293), Expect = 1e-031
Identities = 53/77 (68%), Positives = 66/77 (85%)
Frame = -3 / +1
Query: 392 ILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARLLFNQ 213
ILQI+QA KP+ + GLWGSV+AL+R YE +MG+++F P+ +LAWFPFVSEFQ R+LFNQ
Sbjct: 412 ILQIAQACKPLARHVGLWGSVRALARAYEIIMGVLLFTPITILAWFPFVSEFQTRMLFNQ 591
Query: 212 AFSRGLQISRILAGGKK 162
AFSRGLQISRIL G K+
Sbjct: 592 AFSRGLQISRILGGQKR 642
>gb|BE918255.1|BE918255 OV1_1_A10.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 352
Score = 125 bits (267), Expect = 4e-028
Identities = 48/78 (61%), Positives = 63/78 (80%)
Frame = -3 / +1
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW I+ I+ A KPV+K GLW +V+AL+R Y+ G++IF+P+A+ +WFPF+S FQ RL
Sbjct: 70 TGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGTGMIIFIPIAICSWFPFISTFQTRL 249
Query: 224 LFNQAFSRGLQISRILAG 171
LFNQAFSRGL+IS ILAG
Sbjct: 250 LFNQAFSRGLEISLILAG 303
>gb|BE918364.1|BE918364 OV1_2_G01.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 651
Score = 125 bits (267), Expect = 4e-028
Identities = 48/78 (61%), Positives = 63/78 (80%)
Frame = -3 / +2
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW I+ I+ A KPV+K GLW +V+AL+R Y+ G++IF+P+A+ +WFPF+S FQ RL
Sbjct: 173 TGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGTGMIIFIPIAICSWFPFISTFQTRL 352
Query: 224 LFNQAFSRGLQISRILAG 171
LFNQAFSRGL+IS ILAG
Sbjct: 353 LFNQAFSRGLEISLILAG 406
>gb|BE918448.1|BE918448 OV1_3_H04.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 508
Score = 125 bits (267), Expect = 4e-028
Identities = 48/78 (61%), Positives = 63/78 (80%)
Frame = -3 / +1
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW I+ I+ A KPV+K GLW +V+AL+R Y+ G++IF+P+A+ +WFPF+S FQ RL
Sbjct: 16 TGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGTGMIIFIPIAICSWFPFISTFQTRL 195
Query: 224 LFNQAFSRGLQISRILAG 171
LFNQAFSRGL+IS ILAG
Sbjct: 196 LFNQAFSRGLEISLILAG 249
>gb|BE918460.1|BE918460 OV1_4_B02.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 650
Score = 125 bits (267), Expect = 4e-028
Identities = 48/78 (61%), Positives = 63/78 (80%)
Frame = -3 / +2
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW I+ I+ A KPV+K GLW +V+AL+R Y+ G++IF+P+A+ +WFPF+S FQ RL
Sbjct: 161 TGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGTGMIIFIPIAICSWFPFISTFQTRL 340
Query: 224 LFNQAFSRGLQISRILAG 171
LFNQAFSRGL+IS ILAG
Sbjct: 341 LFNQAFSRGLEISLILAG 394
>gb|BF656415.1|BF656415 FM1_45_E11.g2_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 601
Score = 125 bits (267), Expect = 4e-028
Identities = 48/78 (61%), Positives = 63/78 (80%)
Frame = -3 / +1
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW I+ I+ A KPV+K GLW +V+AL+R Y+ G++IF+P+A+ +WFPF+S FQ RL
Sbjct: 103 TGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGTGMIIFIPIAICSWFPFISTFQTRL 282
Query: 224 LFNQAFSRGLQISRILAG 171
LFNQAFSRGL+IS ILAG
Sbjct: 283 LFNQAFSRGLEISLILAG 336
>gb|BG054070.1|BG054070 OV2_3_A09.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 590
Score = 125 bits (267), Expect = 4e-028
Identities = 48/78 (61%), Positives = 63/78 (80%)
Frame = -3 / +2
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW I+ I+ A KPV+K GLW +V+AL+R Y+ G++IF+P+A+ +WFPF+S FQ RL
Sbjct: 107 TGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGTGMIIFIPIAICSWFPFISTFQTRL 286
Query: 224 LFNQAFSRGLQISRILAG 171
LFNQAFSRGL+IS ILAG
Sbjct: 287 LFNQAFSRGLEISLILAG 340
>gb|BM330076.1|BM330076 PIC1_46_H07.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 612
Score = 125 bits (267), Expect = 4e-028
Identities = 48/78 (61%), Positives = 63/78 (80%)
Frame = -3 / +3
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW I+ I+ A KPV+K GLW +V+AL+R Y+ G++IF+P+A+ +WFPF+S FQ RL
Sbjct: 105 TGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGTGMIIFIPIAICSWFPFISTFQTRL 284
Query: 224 LFNQAFSRGLQISRILAG 171
LFNQAFSRGL+IS ILAG
Sbjct: 285 LFNQAFSRGLEISLILAG 338
>gb|CF771524.1|CF771524 DSBF1_20_E12.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_20_E12_A010 3', mRNA sequence
Length = 634
Score = 125 bits (267), Expect = 4e-028
Identities = 48/78 (61%), Positives = 63/78 (80%)
Frame = -3 / +2
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW I+ I+ A KPV+K GLW +V+AL+R Y+ G++IF+P+A+ +WFPF+S FQ RL
Sbjct: 110 TGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGTGMIIFIPIAICSWFPFISTFQTRL 289
Query: 224 LFNQAFSRGLQISRILAG 171
LFNQAFSRGL+IS ILAG
Sbjct: 290 LFNQAFSRGLEISLILAG 343
>gb|BM328497.1|BM328497 PIC1_29_H10.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 437
Score = 124 bits (266), Expect = 5e-028
Identities = 47/64 (73%), Positives = 57/64 (89%)
Frame = -3 / +1
Query: 347 GLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARLLFNQAFSRGLQISRILAGG 168
GLWGSV+AL+R YE +MG+++F P+ +LAWFPFVSEFQ R+LFNQAFSRGLQISRIL G
Sbjct: 10 GLWGSVRALARAYEIIMGVLLFTPITILAWFPFVSEFQTRMLFNQAFSRGLQISRILGGQ 189
Query: 167 KKQR 156
KK+R
Sbjct: 190 KKER 201
>gb|CN147785.1|CN147785 WOUND1_52_D08.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_52_D08_A002 3', mRNA sequence
Length = 735
Score = 122 bits (262), Expect = 2e-027
Identities = 47/78 (60%), Positives = 62/78 (79%)
Frame = -3 / +2
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW I+ I+ A PV+K GLW +V+AL+R Y+ G++IF+P+A+ +WFPF+S FQ RL
Sbjct: 254 TGWGIISIAMAWNPVVKKLGLWKTVRALARLYDAGTGMIIFIPIAICSWFPFISTFQTRL 433
Query: 224 LFNQAFSRGLQISRILAG 171
LFNQAFSRGL+IS ILAG
Sbjct: 434 LFNQAFSRGLEISLILAG 487
>gb|CW168326.1|CW168326 104_577_11154083_148_36496_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11154083, DNA
sequence
Length = 690
Score = 122 bits (260), Expect = 4e-027
Identities = 49/75 (65%), Positives = 59/75 (78%)
Frame = -3 / -2
Query: 389 LQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARLLFNQA 210
LQI QA P+I+ LW S+ L R YE +MG+++F+P+ L+WFPFVSEFQ RLLFNQA
Sbjct: 503 LQIGQACSPLIRRTMLWDSIMELGRSYENIMGLILFLPIGFLSWFPFVSEFQTRLLFNQA 324
Query: 209 FSRGLQISRILAGGK 165
FSRGLQISRILAG K
Sbjct: 323 FSRGLQISRILAGQK 279
>gb|CF073421.1|CF073421 FE1_10_A03.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_10_A03_A002 3', mRNA sequence
Length = 417
Score = 122 bits (260), Expect = 4e-027
Identities = 47/64 (73%), Positives = 56/64 (87%)
Frame = -3 / +2
Query: 347 GLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARLLFNQAFSRGLQISRILAGG 168
GLWGSV AL+R YE +MG+++F P+ +LAWFPFVSEFQ R+LFNQAFSRGLQISRIL G
Sbjct: 14 GLWGSVGALARPYEIIMGVLLFTPITILAWFPFVSEFQTRMLFNQAFSRGLQISRILGGQ 193
Query: 167 KKQR 156
KK+R
Sbjct: 194 KKER 205
>gb|CW299977.1|CW299977 104_783_11463402_116_36252_077 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11463402, DNA
sequence
Length = 563
Score = 116 bits (248), Expect = 2e-025
Identities = 46/73 (63%), Positives = 60/73 (82%)
Frame = -3 / -3
Query: 389 LQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARLLFNQA 210
LQI+ A KPV+K GLW +V+AL+R Y+ G++IF+P+A+ +WFPF+S FQ RLLFNQA
Sbjct: 339 LQIAMAWKPVVKKLGLWKTVRALARLYDAGTGMIIFIPIAICSWFPFISTFQTRLLFNQA 160
Query: 209 FSRGLQISRILAG 171
FSRGL+IS ILAG
Sbjct: 159 FSRGLEISLILAG 121
>gb|CW047497.1|CW047497 104_285_10512756_115_30217 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10512756, DNA
sequence
Length = 421
Score = 113 bits (242), Expect = 1e-024
Identities = 45/70 (64%), Positives = 55/70 (78%)
Frame = -3 / +3
Query: 374 ASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARLLFNQAFSRGL 195
A P+I+ LW S+ L R YE +MG+++F+P+ L+WFPFVSEFQ RLLFNQAFSRGL
Sbjct: 3 ACSPLIRRTMLWDSIMELGRSYENIMGLILFLPIGFLSWFPFVSEFQTRLLFNQAFSRGL 182
Query: 194 QISRILAGGK 165
QISRILAG K
Sbjct: 183 QISRILAGQK 212
>gb|BF656703.1|BF656703 OV2_19_G06.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 544
Score = 113 bits (242), Expect = 1e-024
Identities = 46/80 (57%), Positives = 58/80 (72%)
Frame = -3 / +2
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW IL ++ K V+K LW SV+ ++R Y+ MG +IFVP+ +WFPFVS FQ+R
Sbjct: 71 TGWCILCLAVTWKKVVKTLRLWDSVREIARMYDAGMGAIIFVPIVFFSWFPFVSTFQSRF 250
Query: 224 LFNQAFSRGLQISRILAGGK 165
LFNQAFSRGL+IS ILAG K
Sbjct: 251 LFNQAFSRGLEISLILAGNK 310
>gb|BG355877.1|BG355877 EM1_17_G07.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 608
Score = 113 bits (242), Expect = 1e-024
Identities = 46/80 (57%), Positives = 58/80 (72%)
Frame = -3 / +1
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW IL ++ K V+K LW SV+ ++R Y+ MG +IFVP+ +WFPFVS FQ+R
Sbjct: 211 TGWCILCLAVTWKKVVKTLRLWDSVREIARMYDAGMGAIIFVPIVFFSWFPFVSTFQSRF 390
Query: 224 LFNQAFSRGLQISRILAGGK 165
LFNQAFSRGL+IS ILAG K
Sbjct: 391 LFNQAFSRGLEISLILAGNK 450
>gb|CD426513.1|CD426513 SA1_21_D06.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_21_D06_A002 3', mRNA sequence
Length = 637
Score = 113 bits (242), Expect = 1e-024
Identities = 46/80 (57%), Positives = 58/80 (72%)
Frame = -3 / +3
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW IL ++ K V+K LW SV+ ++R Y+ MG +IFVP+ +WFPFVS FQ+R
Sbjct: 189 TGWCILCLAVTWKKVVKTLRLWDSVREIARMYDAGMGAIIFVPIVFFSWFPFVSTFQSRF 368
Query: 224 LFNQAFSRGLQISRILAGGK 165
LFNQAFSRGL+IS ILAG K
Sbjct: 369 LFNQAFSRGLEISLILAGNK 428
>gb|CD426607.1|CD426607 SA1_21_D06.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_21_D06_A002 5', mRNA sequence
Length = 612
Score = 113 bits (242), Expect = 1e-024
Identities = 46/80 (57%), Positives = 58/80 (72%)
Frame = -3 / +2
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW IL ++ K V+K LW SV+ ++R Y+ MG +IFVP+ +WFPFVS FQ+R
Sbjct: 188 TGWCILCLAVTWKKVVKTLRLWDSVREIARMYDAGMGAIIFVPIVFFSWFPFVSTFQSRF 367
Query: 224 LFNQAFSRGLQISRILAGGK 165
LFNQAFSRGL+IS ILAG K
Sbjct: 368 LFNQAFSRGLEISLILAGNK 427
>gb|CF074085.1|CF074085 FE1_21_G07.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_21_G07_A002 3', mRNA sequence
Length = 587
Score = 113 bits (242), Expect = 1e-024
Identities = 46/80 (57%), Positives = 58/80 (72%)
Frame = -3 / +1
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW IL ++ K V+K LW SV+ ++R Y+ MG +IFVP+ +WFPFVS FQ+R
Sbjct: 172 TGWCILCLAVTWKKVVKTLRLWDSVREIARMYDAGMGAIIFVPIVFFSWFPFVSTFQSRF 351
Query: 224 LFNQAFSRGLQISRILAGGK 165
LFNQAFSRGL+IS ILAG K
Sbjct: 352 LFNQAFSRGLEISLILAGNK 411
>gb|BM325630.1|BM325630 PIC1_46_H07.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 588
Score = 95.5 bits (202), Expect(2) = 1e-022
Identities = 34/64 (53%), Positives = 49/64 (76%)
Frame = -3 / +2
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW I+ I+ A KPV+K GLW +V+AL+R Y+ G++IF+P+A+ +WFPF+S FQ RL
Sbjct: 350 TGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGTGMIIFIPIAICSWFPFISTFQTRL 529
Query: 224 LFNQ 213
LF +
Sbjct: 530 LFTR 541
Score = 30.9 bits (61), Expect(2) = 1e-022
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = -3 / +1
Query: 218 NQAFSRGLQISRILAG 171
+QAFSRGL+IS ILAG
Sbjct: 535 HQAFSRGLEISLILAG 582
>gb|CW334498.1|CW334498 104_833_11482533_148_36071_095 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11482533, DNA
sequence
Length = 565
Score = 103 bits (220), Expect = 1e-021
Identities = 42/74 (56%), Positives = 54/74 (72%)
Frame = -3 / +1
Query: 386 QISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARLLFNQAF 207
Q++ K V+K LW SV+ ++R Y+ MG +IFVP+ +WFPFVS FQ+R LFNQAF
Sbjct: 190 QLAVTWKKVVKTLRLWDSVREIARMYDAGMGAIIFVPIVFFSWFPFVSTFQSRFLFNQAF 369
Query: 206 SRGLQISRILAGGK 165
SRGL+IS ILAG K
Sbjct: 370 SRGLEISLILAGNK 411
>gb|CD428205.1|CD428205 ETH1_28_F10.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_28_F10_A002 3', mRNA sequence
Length = 673
Score = 101 bits (216), Expect = 4e-021
Identities = 40/80 (50%), Positives = 56/80 (70%)
Frame = -3 / +1
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW ++ I+Q +P I++ +W S+ +++R YE L+G I PVA+L+W P E Q R+
Sbjct: 19 TGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGAFIMAPVALLSWLPGFQEMQTRV 198
Query: 224 LFNQAFSRGLQISRILAGGK 165
LFN+ FSRGLQISRIL G K
Sbjct: 199 LFNEGFSRGLQISRILTGKK 258
>gb|BG054083.1|BG054083 OV2_3_C07.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 567
Score = 89.5 bits (189), Expect(2) = 5e-021
Identities = 37/64 (57%), Positives = 46/64 (71%)
Frame = -3 / +3
Query: 356 KAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARLLFNQAFSRGLQISRIL 177
K FG + ++R Y+ MG +IFVP+ +WFPFVS FQ+R LFNQAFSRGL+IS IL
Sbjct: 195 KPFGYGIQCREIARMYDAGMGAIIFVPIVFFSWFPFVSTFQSRFLFNQAFSRGLEISLIL 374
Query: 176 AGGK 165
AG K
Sbjct: 375 AGNK 386
Score = 30.9 bits (61), Expect(2) = 5e-021
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3 / +2
Query: 404 TGWAILQISQASKPVIKAFGLWGSV 330
TGW IL ++ K V+K LW SV
Sbjct: 146 TGWCILCLAVTWKKVVKTLRLWDSV 220
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 559,649,315
Number of Sequences: 832831
Number of extensions: 8214439
Number of successful extensions: 206757
Number of sequences better than 1.0e-020: 33
length of database: 163,786,556
effective HSP length: 52
effective length of database: 120,479,344
effective search space used: 9879306208
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)