TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3848939.2.1
(952 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX613087.1|CX613087 GABR1_6_E02.b1_A002 GA- or brassinol... 89 2e-043
gb|CX613173.1|CX613173 GABR1_6_E02.g1_A002 GA- or brassinol... 89 1e-038
gb|CN135762.1|CN135762 OX1_38_G05.g1_A002 Oxidatively-stres... 89 1e-037
gb|CN133827.1|CN133827 OX1_18_C06.g1_A002 Oxidatively-stres... 89 1e-037
gb|AW564740.1|AW564740 LG1_300_H05.b1_A002 Light Grown 1 (L... 89 7e-037
gb|CN138444.1|CN138444 OX1_63_G06.g1_A002 Oxidatively-stres... 89 7e-037
gb|CD209901.1|CD209901 HS1_55_C07.g1_A012 Heat-shocked seed... 89 9e-037
gb|CX618089.1|CX618089 GABR1_37_D07.g1_A002 GA- or brassino... 89 1e-036
gb|CW444386.1|CW444386 fsbb001f164p08f0 Sorghum methylation... 89 2e-036
gb|CD429616.1|CD429616 ETH1_14_H10.g1_A002 Ethylene-treated... 89 2e-035
gb|CD211792.1|CD211792 HS1_64_A08.g1_A012 Heat-shocked seed... 89 3e-035
gb|CD427559.1|CD427559 SA1_37_F12.b1_A002 Salicylic acid-tr... 84 1e-033
gb|CN135676.1|CN135676 OX1_38_G05.b1_A002 Oxidatively-stres... 82 9e-031
gb|CX618001.1|CX618001 GABR1_37_D07.b1_A002 GA- or brassino... 82 2e-024
>gb|CX613087.1|CX613087 GABR1_6_E02.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_6_E02_A002 3', mRNA sequence
Length = 721
Score = 88.6 bits (187), Expect(4) = 2e-043
Identities = 34/38 (89%), Positives = 36/38 (94%)
Frame = +2 / +1
Query: 245 GKCPVDTLKLLACVDALNGLAHAVVGTNASDTCCPLLS 358
GKCPV+TLKLLACVDALNGL HAV+GT ASDTCCPLLS
Sbjct: 10 GKCPVNTLKLLACVDALNGLVHAVIGTKASDTCCPLLS 123
Score = 81.7 bits (172), Expect(5) = 1e-033
Identities = 35/37 (94%), Positives = 35/37 (94%)
Frame = -3 / -3
Query: 503 YGHWKLEGTCLPHSLTSTEMATGSTRLTLSALALMVV 393
YGH KLEGTCLPHSLTSTEMATGST LTLSALALMVV
Sbjct: 269 YGHVKLEGTCLPHSLTSTEMATGSTTLTLSALALMVV 159
Score = 81.7 bits (172), Expect(4) = 2e-043
Identities = 35/37 (94%), Positives = 36/37 (97%)
Frame = +1 / +1
Query: 394 TTIKAKALSVSLVLPVAISVLVNECGKHVPSSFQCP* 504
TTIKAKALSVS+VLPVAISVLVNECGKHVPSSF CP*
Sbjct: 160 TTIKAKALSVSVVLPVAISVLVNECGKHVPSSFTCP* 270
Score = 73.9 bits (155), Expect(4) = 5e-024
Identities = 32/45 (71%), Positives = 33/45 (73%)
Frame = -2 / -2
Query: 492 EAGGHVLAALVDEHGDGDGEHEADAERLGLDXXXXXXXXXXXGHA 358
EAGGHVLAALVDEH DGDGEH+ADAERLGLD GHA
Sbjct: 258 EAGGHVLAALVDEHRDGDGEHDADAERLGLDGGAEAERGVEVGHA 124
Score = 51.9 bits (107), Expect(5) = 1e-033
Identities = 22/38 (57%), Positives = 23/38 (60%)
Frame = -2 / -3
Query: 357 DSSGQQVSLALVPTTACARPLXXXXXXXXXXXXTGHLP 244
+SSGQQVSLALVP TAC RPL TGH P
Sbjct: 122 ESSGQQVSLALVPMTACTRPLSASTHASSFSVFTGHFP 9
Score = 39.6 bits (80), Expect(4) = 5e-024
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = -1 / -2
Query: 319 DNGVREAVERVHARQQLQ 266
D+GV EAVERVHARQQLQ
Sbjct: 84 DDGVHEAVERVHARQQLQ 31
Score = 35.9 bits (72), Expect(4) = 2e-043
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +3 / +1
Query: 852 CNIYMICFRWCNADKICQL 908
C Y+ CF WCN DK CQL
Sbjct: 640 CV*YI*CFWWCNVDKACQL 696
Score = 33.1 bits (66), Expect(5) = 1e-033
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -2 / -1
Query: 906 VDRFCQHYTTGSISYI 859
VD+ CQHYTT SI YI
Sbjct: 694 VDKLCQHYTTKSIIYI 647
Score = 32.2 bits (64), Expect(4) = 2e-043
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +3 / +3
Query: 768 CIVNQCESCGL 800
CI+NQCESCGL
Sbjct: 558 CIINQCESCGL 590
Score = 30.9 bits (61), Expect(5) = 1e-033
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = -3 / -3
Query: 806 PTKATTLTLVYDTIILVH 753
P +ATTLTLVYDT + +H
Sbjct: 596 PQEATTLTLVYDT*LQMH 543
Score = 29.9 bits (59), Expect(4) = 5e-024
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -1 / -3
Query: 907 S*QILSALHHRKHIIY 860
S*Q LS LHH+KH IY
Sbjct: 695 S*QALSTLHHQKHHIY 648
Score = 28.6 bits (56), Expect(4) = 5e-024
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -1 / -1
Query: 799 RPQLSHWFTIQ*Y 761
RPQLSHWF I Y
Sbjct: 589 RPQLSHWFMIHDY 551
Score = 24.0 bits (46), Expect(5) = 1e-033
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2 / -1
Query: 867 SYIYYRRALFISFLNDYYKRPHQ 799
S IY LFI +YKRP++
Sbjct: 661 SIIYITHTLFI*VFLKHYKRPYR 593
>gb|CX613173.1|CX613173 GABR1_6_E02.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_6_E02_A002 5', mRNA sequence
Length = 827
Score = 88.6 bits (187), Expect(4) = 1e-038
Identities = 34/38 (89%), Positives = 36/38 (94%)
Frame = +2 / +3
Query: 245 GKCPVDTLKLLACVDALNGLAHAVVGTNASDTCCPLLS 358
GKCPV+TLKLLACVDALNGL HAV+GT ASDTCCPLLS
Sbjct: 249 GKCPVNTLKLLACVDALNGLVHAVIGTKASDTCCPLLS 362
Score = 81.7 bits (172), Expect(4) = 1e-038
Identities = 35/37 (94%), Positives = 36/37 (97%)
Frame = +1 / +3
Query: 394 TTIKAKALSVSLVLPVAISVLVNECGKHVPSSFQCP* 504
TTIKAKALSVS+VLPVAISVLVNECGKHVPSSF CP*
Sbjct: 399 TTIKAKALSVSVVLPVAISVLVNECGKHVPSSFTCP* 509
Score = 81.7 bits (172), Expect(4) = 1e-026
Identities = 35/37 (94%), Positives = 35/37 (94%)
Frame = -3 / -2
Query: 503 YGHWKLEGTCLPHSLTSTEMATGSTRLTLSALALMVV 393
YGH KLEGTCLPHSLTSTEMATGST LTLSALALMVV
Sbjct: 508 YGHVKLEGTCLPHSLTSTEMATGSTTLTLSALALMVV 398
Score = 51.9 bits (107), Expect(4) = 1e-026
Identities = 22/38 (57%), Positives = 23/38 (60%)
Frame = -2 / -2
Query: 357 DSSGQQVSLALVPTTACARPLXXXXXXXXXXXXTGHLP 244
+SSGQQVSLALVP TAC RPL TGH P
Sbjct: 361 ESSGQQVSLALVPMTACTRPLSASTHASSFSVFTGHFP 248
Score = 26.7 bits (52), Expect(4) = 1e-038
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +3 / +2
Query: 15 AGRPQHGHEQPPH 53
A R H HEQPPH
Sbjct: 53 AARHGHDHEQPPH 91
Score = 25.8 bits (50), Expect(4) = 1e-038
Identities = 8/12 (66%), Positives = 12/12 (100%)
Frame = +2 / +1
Query: 761 VLLYRKPV*ELW 796
V++Y+KP+*ELW
Sbjct: 790 VIMYQKPL*ELW 825
Score = 24.4 bits (47), Expect(4) = 1e-026
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -3 / -2
Query: 797 ATTLTLVYDTIILVH 753
ATTLT+V+DT + +H
Sbjct: 826 ATTLTVVFDT*LQMH 782
Score = 23.5 bits (45), Expect(4) = 1e-026
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -1 / -3
Query: 52 CGGCSW 35
CGGCSW
Sbjct: 90 CGGCSW 73
>gb|CN135762.1|CN135762 OX1_38_G05.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_38_G05_A002 5', mRNA sequence
Length = 768
Score = 88.6 bits (187), Expect(4) = 1e-037
Identities = 34/38 (89%), Positives = 36/38 (94%)
Frame = +2 / +3
Query: 245 GKCPVDTLKLLACVDALNGLAHAVVGTNASDTCCPLLS 358
GKCPV+TLKLLACVDALNGL HAV+GT ASDTCCPLLS
Sbjct: 249 GKCPVNTLKLLACVDALNGLVHAVIGTKASDTCCPLLS 362
Score = 81.7 bits (172), Expect(4) = 1e-037
Identities = 35/37 (94%), Positives = 36/37 (97%)
Frame = +1 / +3
Query: 394 TTIKAKALSVSLVLPVAISVLVNECGKHVPSSFQCP* 504
TTIKAKALSVS+VLPVAISVLVNECGKHVPSSF CP*
Sbjct: 399 TTIKAKALSVSVVLPVAISVLVNECGKHVPSSFTCP* 509
Score = 81.7 bits (172), Expect(3) = 8e-025
Identities = 35/37 (94%), Positives = 35/37 (94%)
Frame = -3 / -3
Query: 503 YGHWKLEGTCLPHSLTSTEMATGSTRLTLSALALMVV 393
YGH KLEGTCLPHSLTSTEMATGST LTLSALALMVV
Sbjct: 508 YGHVKLEGTCLPHSLTSTEMATGSTTLTLSALALMVV 398
Score = 51.9 bits (107), Expect(3) = 8e-025
Identities = 22/38 (57%), Positives = 23/38 (60%)
Frame = -2 / -3
Query: 357 DSSGQQVSLALVPTTACARPLXXXXXXXXXXXXTGHLP 244
+SSGQQVSLALVP TAC RPL TGH P
Sbjct: 361 ESSGQQVSLALVPMTACTRPLSASTHASSFSVFTGHFP 248
Score = 26.7 bits (52), Expect(4) = 1e-037
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +3 / +2
Query: 15 AGRPQHGHEQPPH 53
A R H HEQPPH
Sbjct: 53 AARHGHDHEQPPH 91
Score = 23.5 bits (45), Expect(3) = 8e-025
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -1 / -1
Query: 52 CGGCSW 35
CGGCSW
Sbjct: 90 CGGCSW 73
Score = 22.1 bits (42), Expect(4) = 1e-037
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1 / +3
Query: 544 LHMYCYSTVYI*CIVTKLYTSYMYTY 621
+H+Y Y I + LY Y YTY
Sbjct: 597 MHIYIYVGRVIKAGLIDLYI*YTYTY 674
>gb|CN133827.1|CN133827 OX1_18_C06.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_18_C06_A002 5', mRNA sequence
Length = 720
Score = 88.6 bits (187), Expect(4) = 1e-037
Identities = 34/38 (89%), Positives = 36/38 (94%)
Frame = +2 / +1
Query: 245 GKCPVDTLKLLACVDALNGLAHAVVGTNASDTCCPLLS 358
GKCPV+TLKLLACVDALNGL HAV+GT ASDTCCPLLS
Sbjct: 268 GKCPVNTLKLLACVDALNGLVHAVIGTKASDTCCPLLS 381
Score = 81.3 bits (171), Expect(4) = 1e-037
Identities = 34/37 (91%), Positives = 36/37 (97%)
Frame = +1 / +1
Query: 394 TTIKAKALSVSLVLPVAISVLVNECGKHVPSSFQCP* 504
TTIKAKALSVS+VLPVA+SVLVNECGKHVPSSF CP*
Sbjct: 418 TTIKAKALSVSVVLPVAVSVLVNECGKHVPSSFTCP* 528
Score = 79.0 bits (166), Expect(3) = 4e-024
Identities = 34/37 (91%), Positives = 34/37 (91%)
Frame = -3 / -2
Query: 503 YGHWKLEGTCLPHSLTSTEMATGSTRLTLSALALMVV 393
YGH KLEGTCLPHSLTSTE ATGST LTLSALALMVV
Sbjct: 527 YGHVKLEGTCLPHSLTSTETATGSTTLTLSALALMVV 417
Score = 51.9 bits (107), Expect(3) = 4e-024
Identities = 22/38 (57%), Positives = 23/38 (60%)
Frame = -2 / -2
Query: 357 DSSGQQVSLALVPTTACARPLXXXXXXXXXXXXTGHLP 244
+SSGQQVSLALVP TAC RPL TGH P
Sbjct: 380 ESSGQQVSLALVPMTACTRPLSASTHASSFSVFTGHFP 267
Score = 26.7 bits (52), Expect(4) = 1e-037
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +3 / +3
Query: 15 AGRPQHGHEQPPH 53
A R H HEQPPH
Sbjct: 72 AARHGHDHEQPPH 110
Score = 23.5 bits (45), Expect(3) = 4e-024
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -1 / -3
Query: 52 CGGCSW 35
CGGCSW
Sbjct: 109 CGGCSW 92
Score = 22.1 bits (42), Expect(4) = 1e-037
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1 / +1
Query: 544 LHMYCYSTVYI*CIVTKLYTSYMYTY 621
+H+Y Y I + LY Y YTY
Sbjct: 616 MHIYIYVGRVIKAGLIDLYI*YTYTY 693
>gb|AW564740.1|AW564740 LG1_300_H05.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 567
Score = 88.6 bits (187), Expect(3) = 7e-037
Identities = 34/38 (89%), Positives = 36/38 (94%)
Frame = +2 / +3
Query: 245 GKCPVDTLKLLACVDALNGLAHAVVGTNASDTCCPLLS 358
GKCPV+TLKLLACVDALNGL HAV+GT ASDTCCPLLS
Sbjct: 255 GKCPVNTLKLLACVDALNGLVHAVIGTKASDTCCPLLS 368
Score = 81.7 bits (172), Expect(3) = 7e-037
Identities = 35/37 (94%), Positives = 36/37 (97%)
Frame = +1 / +3
Query: 394 TTIKAKALSVSLVLPVAISVLVNECGKHVPSSFQCP* 504
TTIKAKALSVS+VLPVAISVLVNECGKHVPSSF CP*
Sbjct: 405 TTIKAKALSVSVVLPVAISVLVNECGKHVPSSFTCP* 515
Score = 81.7 bits (172), Expect(3) = 4e-025
Identities = 35/37 (94%), Positives = 35/37 (94%)
Frame = -3 / -3
Query: 503 YGHWKLEGTCLPHSLTSTEMATGSTRLTLSALALMVV 393
YGH KLEGTCLPHSLTSTEMATGST LTLSALALMVV
Sbjct: 514 YGHVKLEGTCLPHSLTSTEMATGSTTLTLSALALMVV 404
Score = 51.9 bits (107), Expect(3) = 4e-025
Identities = 22/38 (57%), Positives = 23/38 (60%)
Frame = -2 / -3
Query: 357 DSSGQQVSLALVPTTACARPLXXXXXXXXXXXXTGHLP 244
+SSGQQVSLALVP TAC RPL TGH P
Sbjct: 367 ESSGQQVSLALVPMTACTRPLSASTHASSFSVFTGHFP 254
Score = 26.7 bits (52), Expect(3) = 7e-037
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +3 / +2
Query: 15 AGRPQHGHEQPPH 53
A R H HEQPPH
Sbjct: 59 AARHGHDHEQPPH 97
Score = 23.5 bits (45), Expect(3) = 4e-025
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -1 / -1
Query: 52 CGGCSW 35
CGGCSW
Sbjct: 96 CGGCSW 79
>gb|CN138444.1|CN138444 OX1_63_G06.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_63_G06_A002 5', mRNA sequence
Length = 492
Score = 88.6 bits (187), Expect(3) = 7e-037
Identities = 34/38 (89%), Positives = 36/38 (94%)
Frame = +2 / +2
Query: 245 GKCPVDTLKLLACVDALNGLAHAVVGTNASDTCCPLLS 358
GKCPV+TLKLLACVDALNGL HAV+GT ASDTCCPLLS
Sbjct: 221 GKCPVNTLKLLACVDALNGLVHAVIGTKASDTCCPLLS 334
Score = 81.3 bits (171), Expect(3) = 7e-037
Identities = 34/36 (94%), Positives = 35/36 (97%)
Frame = +1 / +2
Query: 394 TTIKAKALSVSLVLPVAISVLVNECGKHVPSSFQCP 501
TTIKAKALSVS+VLPVAISVLVNECGKHVPSSF CP
Sbjct: 371 TTIKAKALSVSVVLPVAISVLVNECGKHVPSSFTCP 478
Score = 78.5 bits (165), Expect(3) = 3e-024
Identities = 34/36 (94%), Positives = 34/36 (94%)
Frame = -3 / -1
Query: 500 GHWKLEGTCLPHSLTSTEMATGSTRLTLSALALMVV 393
GH KLEGTCLPHSLTSTEMATGST LTLSALALMVV
Sbjct: 477 GHVKLEGTCLPHSLTSTEMATGSTTLTLSALALMVV 370
Score = 51.9 bits (107), Expect(3) = 3e-024
Identities = 22/38 (57%), Positives = 23/38 (60%)
Frame = -2 / -1
Query: 357 DSSGQQVSLALVPTTACARPLXXXXXXXXXXXXTGHLP 244
+SSGQQVSLALVP TAC RPL TGH P
Sbjct: 333 ESSGQQVSLALVPMTACTRPLSASTHASSFSVFTGHFP 220
Score = 26.7 bits (52), Expect(3) = 7e-037
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +3 / +1
Query: 15 AGRPQHGHEQPPH 53
A R H HEQPPH
Sbjct: 25 AARHGHDHEQPPH 63
Score = 23.5 bits (45), Expect(3) = 3e-024
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -1 / -2
Query: 52 CGGCSW 35
CGGCSW
Sbjct: 62 CGGCSW 45
>gb|CD209901.1|CD209901 HS1_55_C07.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_55_C07_A012 5', mRNA sequence
Length = 606
Score = 88.6 bits (187), Expect(3) = 9e-037
Identities = 34/38 (89%), Positives = 36/38 (94%)
Frame = +2 / +1
Query: 245 GKCPVDTLKLLACVDALNGLAHAVVGTNASDTCCPLLS 358
GKCPV+TLKLLACVDALNGL HAV+GT ASDTCCPLLS
Sbjct: 262 GKCPVNTLKLLACVDALNGLVHAVIGTKASDTCCPLLS 375
Score = 81.7 bits (172), Expect(3) = 9e-037
Identities = 35/37 (94%), Positives = 36/37 (97%)
Frame = +1 / +1
Query: 394 TTIKAKALSVSLVLPVAISVLVNECGKHVPSSFQCP* 504
TTIKAKALSVS+VLPVAISVLVNECGKHVPSSF CP*
Sbjct: 412 TTIKAKALSVSVVLPVAISVLVNECGKHVPSSFTCP* 522
Score = 81.7 bits (172), Expect(3) = 5e-025
Identities = 35/37 (94%), Positives = 35/37 (94%)
Frame = -3 / -2
Query: 503 YGHWKLEGTCLPHSLTSTEMATGSTRLTLSALALMVV 393
YGH KLEGTCLPHSLTSTEMATGST LTLSALALMVV
Sbjct: 521 YGHVKLEGTCLPHSLTSTEMATGSTTLTLSALALMVV 411
Score = 51.9 bits (107), Expect(3) = 5e-025
Identities = 22/38 (57%), Positives = 23/38 (60%)
Frame = -2 / -2
Query: 357 DSSGQQVSLALVPTTACARPLXXXXXXXXXXXXTGHLP 244
+SSGQQVSLALVP TAC RPL TGH P
Sbjct: 374 ESSGQQVSLALVPMTACTRPLSASTHASSFSVFTGHFP 261
Score = 26.7 bits (52), Expect(3) = 9e-037
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +3 / +3
Query: 15 AGRPQHGHEQPPH 53
A R H HEQPPH
Sbjct: 66 AARHGHDHEQPPH 104
Score = 23.5 bits (45), Expect(3) = 5e-025
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -1 / -3
Query: 52 CGGCSW 35
CGGCSW
Sbjct: 103 CGGCSW 86
>gb|CX618089.1|CX618089 GABR1_37_D07.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_37_D07_A002 5', mRNA sequence
Length = 663
Score = 88.6 bits (187), Expect(3) = 1e-036
Identities = 34/38 (89%), Positives = 36/38 (94%)
Frame = +2 / +1
Query: 245 GKCPVDTLKLLACVDALNGLAHAVVGTNASDTCCPLLS 358
GKCPV+TLKLLACVDALNGL HAV+GT ASDTCCPLLS
Sbjct: 253 GKCPVNTLKLLACVDALNGLVHAVIGTKASDTCCPLLS 366
Score = 81.7 bits (172), Expect(3) = 1e-036
Identities = 35/37 (94%), Positives = 36/37 (97%)
Frame = +1 / +1
Query: 394 TTIKAKALSVSLVLPVAISVLVNECGKHVPSSFQCP* 504
TTIKAKALSVS+VLPVAISVLVNECGKHVPSSF CP*
Sbjct: 403 TTIKAKALSVSVVLPVAISVLVNECGKHVPSSFTCP* 513
Score = 81.7 bits (172), Expect(3) = 6e-025
Identities = 35/37 (94%), Positives = 35/37 (94%)
Frame = -3 / -2
Query: 503 YGHWKLEGTCLPHSLTSTEMATGSTRLTLSALALMVV 393
YGH KLEGTCLPHSLTSTEMATGST LTLSALALMVV
Sbjct: 512 YGHVKLEGTCLPHSLTSTEMATGSTTLTLSALALMVV 402
Score = 51.9 bits (107), Expect(3) = 6e-025
Identities = 22/38 (57%), Positives = 23/38 (60%)
Frame = -2 / -2
Query: 357 DSSGQQVSLALVPTTACARPLXXXXXXXXXXXXTGHLP 244
+SSGQQVSLALVP TAC RPL TGH P
Sbjct: 365 ESSGQQVSLALVPMTACTRPLSASTHASSFSVFTGHFP 252
Score = 26.7 bits (52), Expect(3) = 1e-036
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +3 / +3
Query: 15 AGRPQHGHEQPPH 53
A R H HEQPPH
Sbjct: 57 AARHGHDHEQPPH 95
Score = 23.5 bits (45), Expect(3) = 6e-025
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -1 / -3
Query: 52 CGGCSW 35
CGGCSW
Sbjct: 94 CGGCSW 77
>gb|CW444386.1|CW444386 fsbb001f164p08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f164p08, DNA
sequence
Length = 505
Score = 88.6 bits (187), Expect(3) = 2e-036
Identities = 34/38 (89%), Positives = 36/38 (94%)
Frame = +2 / -2
Query: 245 GKCPVDTLKLLACVDALNGLAHAVVGTNASDTCCPLLS 358
GKCPV+TLKLLACVDALNGL HAV+GT ASDTCCPLLS
Sbjct: 480 GKCPVNTLKLLACVDALNGLVHAVIGTKASDTCCPLLS 367
Score = 81.7 bits (172), Expect(2) = 3e-024
Identities = 35/37 (94%), Positives = 35/37 (94%)
Frame = -3 / +2
Query: 503 YGHWKLEGTCLPHSLTSTEMATGSTRLTLSALALMVV 393
YGH KLEGTCLPHSLTSTEMATGST LTLSALALMVV
Sbjct: 221 YGHVKLEGTCLPHSLTSTEMATGSTTLTLSALALMVV 331
Score = 81.7 bits (172), Expect(3) = 2e-036
Identities = 35/37 (94%), Positives = 36/37 (97%)
Frame = +1 / -2
Query: 394 TTIKAKALSVSLVLPVAISVLVNECGKHVPSSFQCP* 504
TTIKAKALSVS+VLPVAISVLVNECGKHVPSSF CP*
Sbjct: 330 TTIKAKALSVSVVLPVAISVLVNECGKHVPSSFTCP* 220
Score = 51.9 bits (107), Expect(2) = 3e-024
Identities = 22/38 (57%), Positives = 23/38 (60%)
Frame = -2 / +2
Query: 357 DSSGQQVSLALVPTTACARPLXXXXXXXXXXXXTGHLP 244
+SSGQQVSLALVP TAC RPL TGH P
Sbjct: 368 ESSGQQVSLALVPMTACTRPLSASTHASSFSVFTGHFP 481
Score = 22.1 bits (42), Expect(3) = 2e-036
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1 / -2
Query: 544 LHMYCYSTVYI*CIVTKLYTSYMYTY 621
+H+Y Y I + LY Y YTY
Sbjct: 132 MHIYIYVGRVIKAGLIDLYI*YTYTY 55
>gb|CD429616.1|CD429616 ETH1_14_H10.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_14_H10_A002 5', mRNA sequence
Length = 632
Score = 88.6 bits (187), Expect(3) = 2e-035
Identities = 34/38 (89%), Positives = 36/38 (94%)
Frame = +2 / +1
Query: 245 GKCPVDTLKLLACVDALNGLAHAVVGTNASDTCCPLLS 358
GKCPV+TLKLLACVDALNGL HAV+GT ASDTCCPLLS
Sbjct: 265 GKCPVNTLKLLACVDALNGLVHAVIGTKASDTCCPLLS 378
Score = 77.6 bits (163), Expect(3) = 2e-035
Identities = 34/37 (91%), Positives = 35/37 (94%)
Frame = +1 / +1
Query: 394 TTIKAKALSVSLVLPVAISVLVNECGKHVPSSFQCP* 504
TTIKAKALSVS+VLPVAISVLVNECGK VPSSF CP*
Sbjct: 415 TTIKAKALSVSVVLPVAISVLVNECGKDVPSSFTCP* 525
Score = 77.1 bits (162), Expect(3) = 1e-023
Identities = 34/37 (91%), Positives = 34/37 (91%)
Frame = -3 / -1
Query: 503 YGHWKLEGTCLPHSLTSTEMATGSTRLTLSALALMVV 393
YGH KLEGT LPHSLTSTEMATGST LTLSALALMVV
Sbjct: 524 YGHVKLEGTSLPHSLTSTEMATGSTTLTLSALALMVV 414
Score = 51.9 bits (107), Expect(3) = 1e-023
Identities = 22/38 (57%), Positives = 23/38 (60%)
Frame = -2 / -1
Query: 357 DSSGQQVSLALVPTTACARPLXXXXXXXXXXXXTGHLP 244
+SSGQQVSLALVP TAC RPL TGH P
Sbjct: 377 ESSGQQVSLALVPMTACTRPLSASTHASSFSVFTGHFP 264
Score = 26.7 bits (52), Expect(3) = 2e-035
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +3 / +3
Query: 15 AGRPQHGHEQPPH 53
A R H HEQPPH
Sbjct: 69 AARHGHDHEQPPH 107
Score = 23.5 bits (45), Expect(3) = 1e-023
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -1 / -2
Query: 52 CGGCSW 35
CGGCSW
Sbjct: 106 CGGCSW 89
>gb|CD211792.1|CD211792 HS1_64_A08.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_64_A08_A012 5', mRNA sequence
Length = 609
Score = 88.6 bits (187), Expect(2) = 3e-035
Identities = 34/38 (89%), Positives = 36/38 (94%)
Frame = +2 / +2
Query: 245 GKCPVDTLKLLACVDALNGLAHAVVGTNASDTCCPLLS 358
GKCPV+TLKLLACVDALNGL HAV+GT ASDTCCPLLS
Sbjct: 110 GKCPVNTLKLLACVDALNGLVHAVIGTKASDTCCPLLS 223
Score = 81.7 bits (172), Expect(2) = 3e-035
Identities = 35/37 (94%), Positives = 36/37 (97%)
Frame = +1 / +2
Query: 394 TTIKAKALSVSLVLPVAISVLVNECGKHVPSSFQCP* 504
TTIKAKALSVS+VLPVAISVLVNECGKHVPSSF CP*
Sbjct: 260 TTIKAKALSVSVVLPVAISVLVNECGKHVPSSFTCP* 370
Score = 81.7 bits (172), Expect(2) = 3e-024
Identities = 35/37 (94%), Positives = 35/37 (94%)
Frame = -3 / -1
Query: 503 YGHWKLEGTCLPHSLTSTEMATGSTRLTLSALALMVV 393
YGH KLEGTCLPHSLTSTEMATGST LTLSALALMVV
Sbjct: 369 YGHVKLEGTCLPHSLTSTEMATGSTTLTLSALALMVV 259
Score = 51.9 bits (107), Expect(2) = 3e-024
Identities = 22/38 (57%), Positives = 23/38 (60%)
Frame = -2 / -1
Query: 357 DSSGQQVSLALVPTTACARPLXXXXXXXXXXXXTGHLP 244
+SSGQQVSLALVP TAC RPL TGH P
Sbjct: 222 ESSGQQVSLALVPMTACTRPLSASTHASSFSVFTGHFP 109
>gb|CD427559.1|CD427559 SA1_37_F12.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_37_F12_A002 3', mRNA sequence
Length = 395
Score = 83.5 bits (176), Expect(2) = 1e-033
Identities = 32/36 (88%), Positives = 34/36 (94%)
Frame = +2 / +1
Query: 251 CPVDTLKLLACVDALNGLAHAVVGTNASDTCCPLLS 358
CPV+TLKLLACVDALNGL HAV+GT ASDTCCPLLS
Sbjct: 1 CPVNTLKLLACVDALNGLVHAVIGTKASDTCCPLLS 108
Score = 81.7 bits (172), Expect(2) = 1e-033
Identities = 35/37 (94%), Positives = 36/37 (97%)
Frame = +1 / +1
Query: 394 TTIKAKALSVSLVLPVAISVLVNECGKHVPSSFQCP* 504
TTIKAKALSVS+VLPVAISVLVNECGKHVPSSF CP*
Sbjct: 145 TTIKAKALSVSVVLPVAISVLVNECGKHVPSSFTCP* 255
Score = 81.7 bits (172), Expect(2) = 3e-022
Identities = 35/37 (94%), Positives = 35/37 (94%)
Frame = -3 / -1
Query: 503 YGHWKLEGTCLPHSLTSTEMATGSTRLTLSALALMVV 393
YGH KLEGTCLPHSLTSTEMATGST LTLSALALMVV
Sbjct: 254 YGHVKLEGTCLPHSLTSTEMATGSTTLTLSALALMVV 144
Score = 45.1 bits (92), Expect(2) = 3e-022
Identities = 20/35 (57%), Positives = 21/35 (60%)
Frame = -2 / -1
Query: 357 DSSGQQVSLALVPTTACARPLXXXXXXXXXXXXTG 253
+SSGQQVSLALVP TAC RPL TG
Sbjct: 107 ESSGQQVSLALVPMTACTRPLSASTHASSFSVFTG 3
>gb|CN135676.1|CN135676 OX1_38_G05.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_38_G05_A002 3', mRNA sequence
Length = 589
Score = 82.2 bits (173), Expect(3) = 4e-025
Identities = 35/37 (94%), Positives = 35/37 (94%)
Frame = -3 / -1
Query: 503 YGHWKLEGTCLPHSLTSTEMATGSTRLTLSALALMVV 393
YGH KLEGTCLPHSLTSTEMATGST LTLSALALMVV
Sbjct: 220 YGHLKLEGTCLPHSLTSTEMATGSTTLTLSALALMVV 110
Score = 80.3 bits (169), Expect(5) = 9e-031
Identities = 34/37 (91%), Positives = 36/37 (97%)
Frame = +1 / +3
Query: 394 TTIKAKALSVSLVLPVAISVLVNECGKHVPSSFQCP* 504
TTIKAKALSV +VLPVAISVLVNECGKHVPSSF+CP*
Sbjct: 111 TTIKAKALSVRVVLPVAISVLVNECGKHVPSSFRCP* 221
Score = 53.3 bits (110), Expect(5) = 9e-031
Identities = 20/24 (83%), Positives = 21/24 (87%)
Frame = +2 / +3
Query: 287 DALNGLAHAVVGTNASDTCCPLLS 358
DAL GL HAV+GT ASDTCCPLLS
Sbjct: 3 DALKGLVHAVIGTKASDTCCPLLS 74
Score = 44.1 bits (90), Expect(3) = 4e-025
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = -2 / -1
Query: 357 DSSGQQVSLALVPTTACARPL 295
+SSGQQVSLALVP TAC RPL
Sbjct: 73 ESSGQQVSLALVPMTACTRPL 11
Score = 32.2 bits (64), Expect(5) = 9e-031
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +3 / +3
Query: 768 CIVNQCESCGL 800
CI+NQCESCGL
Sbjct: 507 CIINQCESCGL 539
Score = 30.9 bits (61), Expect(3) = 4e-025
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = -3 / -3
Query: 806 PTKATTLTLVYDTIILVH 753
P +ATTLTLVYDT + +H
Sbjct: 545 PQEATTLTLVYDT*LQMH 492
Score = 22.6 bits (43), Expect(5) = 9e-031
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +1 / +1
Query: 532 IDHHLHM 552
IDHHLHM
Sbjct: 232 IDHHLHM 252
Score = 22.1 bits (42), Expect(5) = 9e-031
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1 / +3
Query: 544 LHMYCYSTVYI*CIVTKLYTSYMYTY 621
+H+Y Y I + LY Y YTY
Sbjct: 309 MHIYIYVGRVIKAGLIDLYI*YTYTY 386
>gb|CX618001.1|CX618001 GABR1_37_D07.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_37_D07_A002 3', mRNA sequence
Length = 583
Score = 81.7 bits (172), Expect(4) = 2e-024
Identities = 35/37 (94%), Positives = 36/37 (97%)
Frame = +1 / +3
Query: 394 TTIKAKALSVSLVLPVAISVLVNECGKHVPSSFQCP* 504
TTIKAKALSVS+VLPVAISVLVNECGKHVPSSF CP*
Sbjct: 33 TTIKAKALSVSVVLPVAISVLVNECGKHVPSSFTCP* 143
Score = 73.0 bits (153), Expect(4) = 1e-022
Identities = 29/31 (93%), Positives = 30/31 (96%)
Frame = -2 / -3
Query: 492 EAGGHVLAALVDEHGDGDGEHEADAERLGLD 400
EAGGHVLAALVDEH DGDGEH+ADAERLGLD
Sbjct: 131 EAGGHVLAALVDEHRDGDGEHDADAERLGLD 39
Score = 35.9 bits (72), Expect(4) = 2e-024
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +3 / +2
Query: 852 CNIYMICFRWCNADKICQL 908
C Y+ CF WCN DK CQL
Sbjct: 512 CV*YI*CFWWCNVDKACQL 568
Score = 33.1 bits (66), Expect(4) = 1e-022
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -2 / -3
Query: 906 VDRFCQHYTTGSISYI 859
VD+ CQHYTT SI YI
Sbjct: 566 VDKLCQHYTTKSIIYI 519
Score = 32.2 bits (64), Expect(4) = 2e-024
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +3 / +3
Query: 768 CIVNQCESCGL 800
CI+NQCESCGL
Sbjct: 429 CIINQCESCGL 461
Score = 30.9 bits (61), Expect(4) = 1e-022
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = -3 / -3
Query: 806 PTKATTLTLVYDTIILVH 753
P +ATTLTLVYDT + +H
Sbjct: 467 PQEATTLTLVYDT*LQMH 414
Score = 29.0 bits (57), Expect(4) = 1e-022
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -1 / -2
Query: 412 PWP*WWC 392
PWP*WWC
Sbjct: 51 PWP*WWC 31
Score = 22.1 bits (42), Expect(4) = 2e-024
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1 / +3
Query: 544 LHMYCYSTVYI*CIVTKLYTSYMYTY 621
+H+Y Y I + LY Y YTY
Sbjct: 231 MHIYIYVGRVIKAGLIDLYI*YTYTY 308
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 857,667,921
Number of Sequences: 832831
Number of extensions: 11565417
Number of successful extensions: 110366
Number of sequences better than 1.0e-020: 14
length of database: 163,786,556
effective HSP length: 55
effective length of database: 117,980,851
effective search space used: 30793002111
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)