TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3802552.2.1
(252 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN141529.1|CN141529 OX1_52_E12.b1_A002 Oxidatively-stres... 135 1e-031
gb|AF152548.1|AF152548 Sorghum bicolor chalcone synthase 1 ... 135 1e-031
gb|AF152549.1|AF152549 Sorghum bicolor chalcone synthase 2 ... 135 1e-031
gb|AF152550.1|AF152550 Sorghum bicolor chalcone synthase 3 ... 135 1e-031
gb|AF152551.1|AF152551 Sorghum bicolor chalcone synthase 4 ... 135 1e-031
gb|AF152552.1|AF152552 Sorghum bicolor chalcone synthase 5 ... 135 1e-031
gb|AF152553.1|AF152553 Sorghum bicolor chalcone synthase 6 ... 135 1e-031
gb|U51569.1|SBU51569 Sorghum bicolor chalcone synthase (CHS... 133 4e-031
gb|BE357763.1|BE357763 DG1_22_G09.b1_A002 Dark Grown 1 (DG1... 133 5e-031
gb|AF152554.1|AF152554 Sorghum bicolor chalcone synthase 7 ... 131 2e-030
gb|BE355662.1|BE355662 DG1_116_C08.b1_A002 Dark Grown 1 (DG... 127 2e-029
gb|AY069951.1| Sorghum bicolor chalcone synthase 8 mRNA, co... 127 2e-029
gb|BE362252.1|BE362252 DG1_85_F07.b1_A002 Dark Grown 1 (DG1... 125 6e-029
gb|AW671616.1|AW671616 LG1_348_A08.b1_A002 Light Grown 1 (L... 126 6e-029
gb|BE357552.1|BE357552 DG1_21_G10.b1_A002 Dark Grown 1 (DG1... 109 8e-029
gb|CN137159.1|CN137159 OX1_55_C01.g1_A002 Oxidatively-stres... 125 2e-028
gb|CN137530.1|CN137530 OX1_57_H07.g1_A002 Oxidatively-stres... 125 2e-028
gb|BE361141.1|BE361141 DG1_70_C01.b1_A002 Dark Grown 1 (DG1... 122 8e-028
gb|CN136049.1|CN136049 OX1_40_B06.g1_A002 Oxidatively-stres... 111 5e-024
gb|CX611634.1|CX611634 ANR1_25_G03.g1_A002 Anaerobic roots ... 105 3e-022
gb|CX606882.1|CX606882 ANR1_5_B02.g1_A002 Anaerobic roots S... 100 6e-021
>gb|CN141529.1|CN141529 OX1_52_E12.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_52_E12_A002 3', mRNA sequence
Length = 750
Score = 135 bits (289), Expect = 1e-031
Identities = 60/80 (75%), Positives = 61/80 (76%)
Frame = +1 / +1
Query: 13 YQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALFXXXX 192
YQQG FAGGTVLRVAKDLAENNRGARVLVVCSEIT VTFRGPSESHLDS+VGQALF
Sbjct: 202 YQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSESHLDSMVGQALFGDGA 381
Query: 193 XXXXXXXXXXXXXERPLFQL 252
ERPLFQL
Sbjct: 382 AAVIVGADPDERVERPLFQL 441
Score = 114 bits (244), Expect = 2e-025
Identities = 52/83 (62%), Positives = 62/83 (74%)
Frame = -1 / -1
Query: 252 ELEERALDAVVRVGAHDHGRRAVAEQRLAHERVEVRLGGAAERDXRDLGAHHQHPRAAVV 73
ELE+RAL A+VRV +H++ RRA+AEQRLA +EV LGG+ +R DLGAHHQ AVV
Sbjct: 441 ELEQRALHALVRVSSHNNCRRAIAEQRLADHGIEVGLGGSPKRYGGDLGAHHQDACPAVV 262
Query: 72 LREVLGHAQHRAAREPPLLVRRR 4
L EVLGHAQHRA E PLLV +
Sbjct: 261 LGEVLGHAQHRATCEAPLLVHHQ 193
Score = 113 bits (241), Expect = 1e-024
Identities = 45/50 (90%), Positives = 46/50 (92%)
Frame = -2 / -2
Query: 158 ESRCDSEGPRNVTXVISEHTTSTRAPRLFSARSLATRSTVPPANHPCWYV 9
ESR DSEGPRNVT VISEHTT TRAPRLFSARSLATRSTVPPA HPCWY+
Sbjct: 347 ESRWDSEGPRNVTAVISEHTTRTRAPRLFSARSLATRSTVPPAKHPCWYI 198
>gb|AF152548.1|AF152548 Sorghum bicolor chalcone synthase 1 (CHS1) gene, complete cds
Length = 2078
Score = 135 bits (289), Expect = 1e-031
Identities = 60/80 (75%), Positives = 61/80 (76%)
Frame = +1 / +1
Query: 13 YQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALFXXXX 192
YQQG FAGGTVLRVAKDLAENNRGARVLVVCSEIT VTFRGPSESHLDS+VGQALF
Sbjct: 1213 YQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSESHLDSMVGQALFGDGA 1392
Query: 193 XXXXXXXXXXXXXERPLFQL 252
ERPLFQL
Sbjct: 1393 AAVIVGADPDERVERPLFQL 1452
Score = 114 bits (244), Expect = 2e-025
Identities = 52/83 (62%), Positives = 62/83 (74%)
Frame = -1 / -3
Query: 252 ELEERALDAVVRVGAHDHGRRAVAEQRLAHERVEVRLGGAAERDXRDLGAHHQHPRAAVV 73
ELE+RAL A+VRV +H++ RRA+AEQRLA +EV LGG+ +R DLGAHHQ AVV
Sbjct: 1452 ELEQRALHALVRVSSHNNCRRAIAEQRLADHGIEVGLGGSPKRYGGDLGAHHQDACPAVV 1273
Query: 72 LREVLGHAQHRAAREPPLLVRRR 4
L EVLGHAQHRA E PLLV +
Sbjct: 1272 LGEVLGHAQHRATCEAPLLVHHQ 1204
Score = 113 bits (241), Expect = 1e-024
Identities = 45/50 (90%), Positives = 46/50 (92%)
Frame = -2 / -1
Query: 158 ESRCDSEGPRNVTXVISEHTTSTRAPRLFSARSLATRSTVPPANHPCWYV 9
ESR DSEGPRNVT VISEHTT TRAPRLFSARSLATRSTVPPA HPCWY+
Sbjct: 1358 ESRWDSEGPRNVTAVISEHTTRTRAPRLFSARSLATRSTVPPAKHPCWYI 1209
>gb|AF152549.1|AF152549 Sorghum bicolor chalcone synthase 2 (CHS2) gene, complete cds
Length = 2100
Score = 135 bits (289), Expect = 1e-031
Identities = 60/80 (75%), Positives = 61/80 (76%)
Frame = +1 / +2
Query: 13 YQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALFXXXX 192
YQQG FAGGTVLRVAKDLAENNRGARVLVVCSEIT VTFRGPSESHLDS+VGQALF
Sbjct: 1235 YQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSESHLDSMVGQALFGDGA 1414
Query: 193 XXXXXXXXXXXXXERPLFQL 252
ERPLFQL
Sbjct: 1415 AAVIVGADPDERVERPLFQL 1474
Score = 113 bits (241), Expect = 1e-024
Identities = 45/50 (90%), Positives = 46/50 (92%)
Frame = -2 / -1
Query: 158 ESRCDSEGPRNVTXVISEHTTSTRAPRLFSARSLATRSTVPPANHPCWYV 9
ESR DSEGPRNVT VISEHTT TRAPRLFSARSLATRSTVPPA HPCWY+
Sbjct: 1380 ESRWDSEGPRNVTAVISEHTTRTRAPRLFSARSLATRSTVPPAKHPCWYI 1231
Score = 108 bits (230), Expect = 2e-023
Identities = 50/83 (60%), Positives = 56/83 (67%)
Frame = -1 / -3
Query: 252 ELEERALDAVVRVGAHDHGRRAVAEQRLAHERVEVRLGGAAERDXRDLGAHHQHPRAAVV 73
ELE+RA +V V ++ R VAEQRL VEV LGG+ ERD DLGAHHQ R VV
Sbjct: 1474 ELEQRAFHTLVGVSTDNNRRGTVAEQRLPDHGVEVGLGGSTERDGGDLGAHHQDARPTVV 1295
Query: 72 LREVLGHAQHRAAREPPLLVRRR 4
L EVL HAQHRAARE PLLV +
Sbjct: 1294 LGEVLSHAQHRAAREAPLLVHHQ 1226
>gb|AF152550.1|AF152550 Sorghum bicolor chalcone synthase 3 (CHS3) gene, complete cds
Length = 2137
Score = 135 bits (289), Expect = 1e-031
Identities = 60/80 (75%), Positives = 61/80 (76%)
Frame = +1 / +3
Query: 13 YQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALFXXXX 192
YQQG FAGGTVLRVAKDLAENNRGARVLVVCSEIT VTFRGPSESHLDS+VGQALF
Sbjct: 1197 YQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSESHLDSMVGQALFGDGA 1376
Query: 193 XXXXXXXXXXXXXERPLFQL 252
ERPLFQL
Sbjct: 1377 AAVIVGADPDERVERPLFQL 1436
Score = 127 bits (272), Expect = 3e-029
Identities = 57/83 (68%), Positives = 66/83 (79%)
Frame = -1 / -3
Query: 252 ELEERALDAVVRVGAHDHGRRAVAEQRLAHERVEVRLGGAAERDXRDLGAHHQHPRAAVV 73
ELE+RAL A+VRV +H++ R AVAEQRLA+ V+V LGG+ ERD DLGAHHQ R AVV
Sbjct: 1436 ELEQRALHALVRVSSHNNRRSAVAEQRLANHGVKVGLGGSPERDRGDLGAHHQDARPAVV 1257
Query: 72 LREVLGHAQHRAAREPPLLVRRR 4
L EVLGHAQHRAARE PLLV +
Sbjct: 1256 LGEVLGHAQHRAAREAPLLVHHQ 1188
Score = 113 bits (241), Expect = 1e-024
Identities = 45/50 (90%), Positives = 46/50 (92%)
Frame = -2 / -1
Query: 158 ESRCDSEGPRNVTXVISEHTTSTRAPRLFSARSLATRSTVPPANHPCWYV 9
ESR DSEGPRNVT VISEHTT TRAPRLFSARSLATRSTVPPA HPCWY+
Sbjct: 1342 ESRWDSEGPRNVTAVISEHTTRTRAPRLFSARSLATRSTVPPAKHPCWYI 1193
>gb|AF152551.1|AF152551 Sorghum bicolor chalcone synthase 4 (CHS4) gene, complete cds
Length = 2469
Score = 135 bits (289), Expect = 1e-031
Identities = 60/80 (75%), Positives = 61/80 (76%)
Frame = +1 / +2
Query: 13 YQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALFXXXX 192
YQQG FAGGTVLRVAKDLAENNRGARVLVVCSEIT VTFRGPSESHLDS+VGQALF
Sbjct: 1598 YQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSESHLDSMVGQALFGDGA 1777
Query: 193 XXXXXXXXXXXXXERPLFQL 252
ERPLFQL
Sbjct: 1778 AAVIVGADPDERVERPLFQL 1837
Score = 113 bits (241), Expect = 1e-024
Identities = 45/50 (90%), Positives = 46/50 (92%)
Frame = -2 / -1
Query: 158 ESRCDSEGPRNVTXVISEHTTSTRAPRLFSARSLATRSTVPPANHPCWYV 9
ESR DSEGPRNVT VISEHTT TRAPRLFSARSLATRSTVPPA HPCWY+
Sbjct: 1743 ESRWDSEGPRNVTAVISEHTTRTRAPRLFSARSLATRSTVPPAKHPCWYI 1594
Score = 112 bits (240), Expect = 8e-025
Identities = 51/83 (61%), Positives = 59/83 (71%)
Frame = -1 / -3
Query: 252 ELEERALDAVVRVGAHDHGRRAVAEQRLAHERVEVRLGGAAERDXRDLGAHHQHPRAAVV 73
ELE+RA +V V ++ RRA+ EQRL VEV LGG+ E D DLGAHHQ R+AVV
Sbjct: 1837 ELEQRAFHTLVGVSTDNNRRRAITEQRLPDHGVEVGLGGSPECDGSDLGAHHQDTRSAVV 1658
Query: 72 LREVLGHAQHRAAREPPLLVRRR 4
L EVLGHAQHRAARE PLLV +
Sbjct: 1657 LGEVLGHAQHRAAREAPLLVHHQ 1589
>gb|AF152552.1|AF152552 Sorghum bicolor chalcone synthase 5 (CHS5) gene, complete cds
Length = 3960
Score = 135 bits (289), Expect = 1e-031
Identities = 60/80 (75%), Positives = 61/80 (76%)
Frame = +1 / +1
Query: 13 YQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALFXXXX 192
YQQG FAGGTVLRVAKDLAENNRGARVLVVCSEIT VTFRGPSESHLDS+VGQALF
Sbjct: 2917 YQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSESHLDSMVGQALFGDGA 3096
Query: 193 XXXXXXXXXXXXXERPLFQL 252
ERPLFQL
Sbjct: 3097 AAVIVGADPDERVERPLFQL 3156
Score = 126 bits (269), Expect = 8e-029
Identities = 56/83 (67%), Positives = 64/83 (77%)
Frame = -1 / -1
Query: 252 ELEERALDAVVRVGAHDHGRRAVAEQRLAHERVEVRLGGAAERDXRDLGAHHQHPRAAVV 73
ELE+RAL A+VRV +H++ R VAEQRLA+ VEV LGG+ ERD DLGAHHQ R VV
Sbjct: 3156 ELEQRALHALVRVSSHNNRRSTVAEQRLANHGVEVGLGGSTERDGGDLGAHHQDARPTVV 2977
Query: 72 LREVLGHAQHRAAREPPLLVRRR 4
L EVLGHAQHRAARE PLLV +
Sbjct: 2976 LGEVLGHAQHRAAREAPLLVHHQ 2908
Score = 113 bits (241), Expect = 1e-024
Identities = 45/50 (90%), Positives = 46/50 (92%)
Frame = -2 / -2
Query: 158 ESRCDSEGPRNVTXVISEHTTSTRAPRLFSARSLATRSTVPPANHPCWYV 9
ESR DSEGPRNVT VISEHTT TRAPRLFSARSLATRSTVPPA HPCWY+
Sbjct: 3062 ESRWDSEGPRNVTAVISEHTTRTRAPRLFSARSLATRSTVPPAKHPCWYI 2913
>gb|AF152553.1|AF152553 Sorghum bicolor chalcone synthase 6 (CHS6) gene, complete cds
Length = 3366
Score = 135 bits (289), Expect = 1e-031
Identities = 60/80 (75%), Positives = 61/80 (76%)
Frame = +1 / +3
Query: 13 YQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALFXXXX 192
YQQG FAGGTVLRVAKDLAENNRGARVLVVCSEIT VTFRGPSESHLDS+VGQALF
Sbjct: 2526 YQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSESHLDSMVGQALFGDGA 2705
Query: 193 XXXXXXXXXXXXXERPLFQL 252
ERPLFQL
Sbjct: 2706 AAVIVGADPDERVERPLFQL 2765
Score = 117 bits (250), Expect = 4e-026
Identities = 54/83 (65%), Positives = 60/83 (72%)
Frame = -1 / -2
Query: 252 ELEERALDAVVRVGAHDHGRRAVAEQRLAHERVEVRLGGAAERDXRDLGAHHQHPRAAVV 73
ELE+ A A VRV ++ RRA+AEQRLA VEV LGGA ERD DL AHHQ R AVV
Sbjct: 2765 ELEQWAFHAFVRVSTDNNRRRAIAEQRLADHGVEVGLGGATERDGGDLRAHHQDARPAVV 2586
Query: 72 LREVLGHAQHRAAREPPLLVRRR 4
L E+LGHAQHRAARE PLLV +
Sbjct: 2585 LGEILGHAQHRAAREAPLLVHHQ 2517
Score = 113 bits (241), Expect = 1e-024
Identities = 45/50 (90%), Positives = 46/50 (92%)
Frame = -2 / -3
Query: 158 ESRCDSEGPRNVTXVISEHTTSTRAPRLFSARSLATRSTVPPANHPCWYV 9
ESR DSEGPRNVT VISEHTT TRAPRLFSARSLATRSTVPPA HPCWY+
Sbjct: 2671 ESRWDSEGPRNVTAVISEHTTRTRAPRLFSARSLATRSTVPPAKHPCWYI 2522
>gb|U51569.1|SBU51569 Sorghum bicolor chalcone synthase (CHS) gene, allele 2G, exon 2,
partial cds
Length = 620
Score = 133 bits (286), Expect = 4e-031
Identities = 59/80 (73%), Positives = 61/80 (76%)
Frame = +1 / +1
Query: 13 YQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALFXXXX 192
YQQG FAGGTVLR+AKDLAENNRGARVLVVCSEIT VTFRGPSESHLDS+VGQALF
Sbjct: 73 YQQGCFAGGTVLRLAKDLAENNRGARVLVVCSEITAVTFRGPSESHLDSMVGQALFGDGA 252
Query: 193 XXXXXXXXXXXXXERPLFQL 252
ERPLFQL
Sbjct: 253 AAVIVGADPDERVERPLFQL 312
Score = 124 bits (265), Expect = 3e-028
Identities = 56/80 (70%), Positives = 62/80 (77%)
Frame = -1 / -3
Query: 252 ELEERALDAVVRVGAHDHGRRAVAEQRLAHERVEVRLGGAAERDXRDLGAHHQHPRAAVV 73
ELE+RAL A+VRV +HD+ R VAEQRLA+ VEV LGG+ ERD DLGAHHQ R VV
Sbjct: 312 ELEQRALHALVRVSSHDNRRSTVAEQRLANHGVEVGLGGSTERDGGDLGAHHQDARPTVV 133
Query: 72 LREVLGHAQHRAAREPPLLV 13
L EVLG AQHRAARE PLLV
Sbjct: 132 LGEVLGQAQHRAAREAPLLV 73
Score = 110 bits (235), Expect = 8e-024
Identities = 44/50 (88%), Positives = 45/50 (90%)
Frame = -2 / -1
Query: 158 ESRCDSEGPRNVTXVISEHTTSTRAPRLFSARSLATRSTVPPANHPCWYV 9
ESR DSEGPRNVT VISEHTT TRAPRLFSARSLA RSTVPPA HPCWY+
Sbjct: 218 ESRWDSEGPRNVTAVISEHTTRTRAPRLFSARSLARRSTVPPAKHPCWYI 69
>gb|BE357763.1|BE357763 DG1_22_G09.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 615
Score = 133 bits (285), Expect = 5e-031
Identities = 59/79 (74%), Positives = 60/79 (75%)
Frame = +1 / +1
Query: 13 YQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALFXXXX 192
YQQG FAGGTVLRVAKDLAENNRGARVLVVCSEIT VTFRGPSESHLDS+VGQALF
Sbjct: 379 YQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSESHLDSMVGQALFGDGA 558
Query: 193 XXXXXXXXXXXXXERPLFQ 249
ERPLFQ
Sbjct: 559 AAVIVGADPDERVERPLFQ 615
Score = 123 bits (264), Expect = 4e-028
Identities = 55/82 (67%), Positives = 63/82 (76%)
Frame = -1 / -1
Query: 249 LEERALDAVVRVGAHDHGRRAVAEQRLAHERVEVRLGGAAERDXRDLGAHHQHPRAAVVL 70
LE+RAL A+VRV +H++ R VAEQRLA+ VEV LGG+ ERD DLGAHHQ R VVL
Sbjct: 615 LEQRALHALVRVSSHNNRRSTVAEQRLANHGVEVGLGGSTERDGGDLGAHHQDARPTVVL 436
Query: 69 REVLGHAQHRAAREPPLLVRRR 4
EVLGHAQHRAARE PLLV +
Sbjct: 435 GEVLGHAQHRAAREAPLLVHHQ 370
Score = 113 bits (241), Expect = 1e-024
Identities = 45/50 (90%), Positives = 46/50 (92%)
Frame = -2 / -2
Query: 158 ESRCDSEGPRNVTXVISEHTTSTRAPRLFSARSLATRSTVPPANHPCWYV 9
ESR DSEGPRNVT VISEHTT TRAPRLFSARSLATRSTVPPA HPCWY+
Sbjct: 524 ESRWDSEGPRNVTAVISEHTTRTRAPRLFSARSLATRSTVPPAKHPCWYI 375
>gb|AF152554.1|AF152554 Sorghum bicolor chalcone synthase 7 (CHS7) gene, complete cds
Length = 1847
Score = 131 bits (281), Expect = 2e-030
Identities = 59/80 (73%), Positives = 60/80 (75%)
Frame = +1 / +1
Query: 13 YQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALFXXXX 192
YQQG FAGGTVLRVAKDLAENNRGARVLVVCSEIT VTFRGPSESHLDS+VGQALF
Sbjct: 1102 YQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSESHLDSMVGQALFGDGA 1281
Query: 193 XXXXXXXXXXXXXERPLFQL 252
E PLFQL
Sbjct: 1282 AAVIVGADPDKRVECPLFQL 1341
Score = 111 bits (238), Expect = 3e-024
Identities = 44/50 (88%), Positives = 46/50 (92%)
Frame = -2 / -1
Query: 158 ESRCDSEGPRNVTXVISEHTTSTRAPRLFSARSLATRSTVPPANHPCWYV 9
ESR DS+GPRNVT VISEHTT TRAPRLFSARSLATRSTVPPA HPCWY+
Sbjct: 1247 ESRWDSDGPRNVTAVISEHTTRTRAPRLFSARSLATRSTVPPAKHPCWYI 1098
Score = 101 bits (215), Expect = 2e-021
Identities = 48/83 (57%), Positives = 55/83 (66%)
Frame = -1 / -3
Query: 252 ELEERALDAVVRVGAHDHGRRAVAEQRLAHERVEVRLGGAAERDXRDLGAHHQHPRAAVV 73
ELE+RA +V V ++ RR +AEQRL VEV LG + E D DLGAHHQ R AVV
Sbjct: 1341 ELEQRAFHTLVGVSTDNNRRRPIAEQRLPDHGVEVGLGWSPECDGSDLGAHHQDTRPAVV 1162
Query: 72 LREVLGHAQHRAAREPPLLVRRR 4
L EVL HAQHRAARE LLV +
Sbjct: 1161 LGEVLSHAQHRAAREASLLVHHQ 1093
>gb|BE355662.1|BE355662 DG1_116_C08.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 500
Score = 127 bits (273), Expect = 2e-029
Identities = 57/83 (68%), Positives = 59/83 (71%)
Frame = +1 / +2
Query: 4 ASTYQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALFX 183
A Y QG FAGG VLR+AKDLAENNRGARVL+VCSEIT VTFRGPSESHLDSLVGQALF
Sbjct: 20 AMMYHQGCFAGGMVLRLAKDLAENNRGARVLIVCSEITVVTFRGPSESHLDSLVGQALFG 199
Query: 184 XXXXXXXXXXXXXXXXERPLFQL 252
ERPLF L
Sbjct: 200 DGAAAVIVGADPSEPAERPLFHL 268
Score = 100 bits (213), Expect = 8e-021
Identities = 42/52 (80%), Positives = 44/52 (84%)
Frame = -2 / -3
Query: 158 ESRCDSEGPRNVTXVISEHTTSTRAPRLFSARSLATRSTVPPANHPCWYVDA 3
ESR DSEGPRNVT VISEHT STRAPRLFSARSLA RST+PPA P WY+ A
Sbjct: 174 ESR*DSEGPRNVTTVISEHTMSTRAPRLFSARSLARRSTIPPAKQPWWYIIA 19
>gb|AY069951.1| Sorghum bicolor chalcone synthase 8 mRNA, complete cds
Length = 1497
Score = 127 bits (273), Expect = 2e-029
Identities = 57/83 (68%), Positives = 59/83 (71%)
Frame = +1 / +2
Query: 4 ASTYQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALFX 183
A Y QG FAGG VLR+AKDLAENNRGARVL+VCSEIT VTFRGPSESHLDSLVGQALF
Sbjct: 569 AMMYHQGCFAGGMVLRLAKDLAENNRGARVLIVCSEITVVTFRGPSESHLDSLVGQALFG 748
Query: 184 XXXXXXXXXXXXXXXXERPLFQL 252
ERPLF L
Sbjct: 749 DGAAAVIVGADPSEPAERPLFHL 817
Score = 100 bits (213), Expect = 8e-021
Identities = 42/52 (80%), Positives = 44/52 (84%)
Frame = -2 / -1
Query: 158 ESRCDSEGPRNVTXVISEHTTSTRAPRLFSARSLATRSTVPPANHPCWYVDA 3
ESR DSEGPRNVT VISEHT STRAPRLFSARSLA RST+PPA P WY+ A
Sbjct: 723 ESR*DSEGPRNVTTVISEHTMSTRAPRLFSARSLARRSTIPPAKQPWWYIIA 568
>gb|BE362252.1|BE362252 DG1_85_F07.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 591
Score = 125 bits (267), Expect(2) = 6e-029
Identities = 53/56 (94%), Positives = 54/56 (96%)
Frame = +1 / +1
Query: 13 YQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALF 180
YQQG FAGGTVLRVAKDLAENNRGARVLVVCSEIT VTFRGPSESHLDS+VGQALF
Sbjct: 406 YQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSESHLDSMVGQALF 573
Score = 113 bits (241), Expect = 1e-024
Identities = 45/50 (90%), Positives = 46/50 (92%)
Frame = -2 / -2
Query: 158 ESRCDSEGPRNVTXVISEHTTSTRAPRLFSARSLATRSTVPPANHPCWYV 9
ESR DSEGPRNVT VISEHTT TRAPRLFSARSLATRSTVPPA HPCWY+
Sbjct: 551 ESRWDSEGPRNVTAVISEHTTRTRAPRLFSARSLATRSTVPPAKHPCWYI 402
Score = 19.4 bits (36), Expect(2) = 6e-029
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +2 / +2
Query: 170 RRCSATARR 196
RRCS ARR
Sbjct: 563 RRCSVMARR 589
>gb|AW671616.1|AW671616 LG1_348_A08.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 556
Score = 126 bits (270), Expect = 6e-029
Identities = 57/80 (71%), Positives = 58/80 (72%)
Frame = +1 / +2
Query: 13 YQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALFXXXX 192
YQQG FAGGTVLRVAKDLAENNRGARVL VCSEIT VTFRGPSESHLDS+VGQALF
Sbjct: 299 YQQGCFAGGTVLRVAKDLAENNRGARVLEVCSEITAVTFRGPSESHLDSMVGQALFGDGA 478
Query: 193 XXXXXXXXXXXXXERPLFQL 252
E PL QL
Sbjct: 479 AAAIVGADPDKRVECPLIQL 538
Score = 110 bits (234), Expect = 1e-023
Identities = 43/50 (86%), Positives = 46/50 (92%)
Frame = -2 / -2
Query: 158 ESRCDSEGPRNVTXVISEHTTSTRAPRLFSARSLATRSTVPPANHPCWYV 9
ESR DS+GPRNVT VISEHT+ TRAPRLFSARSLATRSTVPPA HPCWY+
Sbjct: 444 ESRWDSDGPRNVTAVISEHTSRTRAPRLFSARSLATRSTVPPAKHPCWYI 295
>gb|BE357552.1|BE357552 DG1_21_G10.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 605
Score = 109 bits (232), Expect(2) = 8e-029
Identities = 43/48 (89%), Positives = 44/48 (91%)
Frame = -2 / -1
Query: 152 RCDSEGPRNVTXVISEHTTSTRAPRLFSARSLATRSTVPPANHPCWYV 9
R DSEGPRNVT VISEHTT TRAPRLFSARSLATRSTVPPA HPCWY+
Sbjct: 518 RWDSEGPRNVTAVISEHTTRTRAPRLFSARSLATRSTVPPAKHPCWYI 375
Score = 106 bits (226), Expect(2) = 3e-024
Identities = 45/47 (95%), Positives = 45/47 (95%)
Frame = +1 / +1
Query: 13 YQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHL 153
YQQG FAGGTVLRVAKDLAENNRGARVLVVCSEIT VTFRGPSESHL
Sbjct: 379 YQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSESHL 519
Score = 35.9 bits (72), Expect(2) = 8e-029
Identities = 16/28 (57%), Positives = 21/28 (75%)
Frame = -1 / -2
Query: 237 ALDAVVRVGAHDHGRRAVAEQRLAHERV 154
AL A+VRV +H++ R VAEQRLA+ V
Sbjct: 604 ALHALVRVSSHNNRRSTVAEQRLANHGV 521
Score = 22.1 bits (42), Expect(2) = 3e-024
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1 / +2
Query: 136 PSESHLDSLVGQALF 180
P DS+VGQALF
Sbjct: 503 PPSPTSDSMVGQALF 547
>gb|CN137159.1|CN137159 OX1_55_C01.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_55_C01_A002 5', mRNA sequence
Length = 662
Score = 125 bits (267), Expect = 2e-028
Identities = 53/56 (94%), Positives = 54/56 (96%)
Frame = +1 / +3
Query: 13 YQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALF 180
YQQG FAGGTVLRVAKDLAENNRGARVLVVCSEIT VTFRGPSESHLDS+VGQALF
Sbjct: 492 YQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSESHLDSMVGQALF 659
Score = 113 bits (241), Expect = 1e-024
Identities = 45/50 (90%), Positives = 46/50 (92%)
Frame = -2 / -2
Query: 158 ESRCDSEGPRNVTXVISEHTTSTRAPRLFSARSLATRSTVPPANHPCWYV 9
ESR DSEGPRNVT VISEHTT TRAPRLFSARSLATRSTVPPA HPCWY+
Sbjct: 637 ESRWDSEGPRNVTAVISEHTTRTRAPRLFSARSLATRSTVPPAKHPCWYI 488
>gb|CN137530.1|CN137530 OX1_57_H07.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_57_H07_A002 5', mRNA sequence
Length = 852
Score = 125 bits (267), Expect = 2e-028
Identities = 53/56 (94%), Positives = 54/56 (96%)
Frame = +1 / +3
Query: 13 YQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALF 180
YQQG FAGGTVLRVAKDLAENNRGARVLVVCSEIT VTFRGPSESHLDS+VGQALF
Sbjct: 684 YQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSESHLDSMVGQALF 851
Score = 111 bits (238), Expect = 3e-024
Identities = 44/50 (88%), Positives = 46/50 (92%)
Frame = -2 / -3
Query: 158 ESRCDSEGPRNVTXVISEHTTSTRAPRLFSARSLATRSTVPPANHPCWYV 9
ESR DS+GPRNVT VISEHTT TRAPRLFSARSLATRSTVPPA HPCWY+
Sbjct: 829 ESRWDSDGPRNVTAVISEHTTRTRAPRLFSARSLATRSTVPPAKHPCWYI 680
>gb|BE361141.1|BE361141 DG1_70_C01.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 457
Score = 122 bits (262), Expect = 8e-028
Identities = 55/74 (74%), Positives = 56/74 (75%)
Frame = +1 / +2
Query: 31 AGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALFXXXXXXXXXX 210
AGGTVLRVAKDLAENNRGARVLVVCSEIT VTFRGPSESHLDS+VGQALF
Sbjct: 2 AGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSESHLDSMVGQALFGDGAAAVIVG 181
Query: 211 XXXXXXXERPLFQL 252
ERPLFQL
Sbjct: 182 ADPDERVERPLFQL 223
Score = 115 bits (245), Expect = 2e-025
Identities = 51/74 (68%), Positives = 58/74 (78%)
Frame = -1 / -1
Query: 252 ELEERALDAVVRVGAHDHGRRAVAEQRLAHERVEVRLGGAAERDXRDLGAHHQHPRAAVV 73
ELE+RAL A+VRV +H++ R VAEQRLA+ VEV LGG+ ERD DLGAHHQ R VV
Sbjct: 223 ELEQRALHALVRVSSHNNRRSTVAEQRLANHGVEVGLGGSTERDGGDLGAHHQDARPTVV 44
Query: 72 LREVLGHAQHRAAR 31
L EVLGHAQHRAAR
Sbjct: 43 LGEVLGHAQHRAAR 2
>gb|CN136049.1|CN136049 OX1_40_B06.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_40_B06_A002 5', mRNA sequence
Length = 814
Score = 111 bits (236), Expect = 5e-024
Identities = 44/49 (89%), Positives = 45/49 (91%)
Frame = -2 / -3
Query: 155 SRCDSEGPRNVTXVISEHTTSTRAPRLFSARSLATRSTVPPANHPCWYV 9
SR DSEGPRNVT VISEHTT TRAPRLFSARSLATRSTVPPA HPCWY+
Sbjct: 812 SRWDSEGPRNVTAVISEHTTRTRAPRLFSARSLATRSTVPPAKHPCWYI 666
Score = 109 bits (232), Expect = 1e-023
Identities = 46/48 (95%), Positives = 46/48 (95%)
Frame = +1 / +1
Query: 13 YQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLD 156
YQQG FAGGTVLRVAKDLAENNRGARVLVVCSEIT VTFRGPSESHLD
Sbjct: 670 YQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSESHLD 813
>gb|CX611634.1|CX611634 ANR1_25_G03.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_25_G03_A002 5', mRNA sequence
Length = 801
Score = 105 bits (223), Expect = 3e-022
Identities = 41/45 (91%), Positives = 42/45 (93%)
Frame = -2 / -1
Query: 143 SEGPRNVTXVISEHTTSTRAPRLFSARSLATRSTVPPANHPCWYV 9
SEGPRNVT VISEHTT TRAPRLFSARSLATRSTVPPA HPCWY+
Sbjct: 801 SEGPRNVTAVISEHTTRTRAPRLFSARSLATRSTVPPAKHPCWYI 667
>gb|CX606882.1|CX606882 ANR1_5_B02.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_5_B02_A002 5', mRNA sequence
Length = 796
Score = 100 bits (214), Expect = 6e-021
Identities = 39/43 (90%), Positives = 40/43 (93%)
Frame = -2 / -3
Query: 137 GPRNVTXVISEHTTSTRAPRLFSARSLATRSTVPPANHPCWYV 9
GPRNVT VISEHTT TRAPRLFSARSLATRSTVPPA HPCWY+
Sbjct: 794 GPRNVTAVISEHTTRTRAPRLFSARSLATRSTVPPAKHPCWYI 666
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 180,701,170
Number of Sequences: 832831
Number of extensions: 2188984
Number of successful extensions: 393220
Number of sequences better than 1.0e-020: 22
length of database: 163,786,556
effective HSP length: 50
effective length of database: 122,145,006
effective search space used: 4030785198
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)