TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3802485.2.1
(1118 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM322978.1|BM322978 PIC1_15_H10.b1_A002 Pathogen-infecte... 432 e-120
gb|BM324971.1|BM324971 PIC1_38_B08.b1_A002 Pathogen-infecte... 430 e-119
gb|CN124566.1|CN124566 RHOH1_5_D02.g1_A002 Acid- and alkali... 370 e-110
gb|CN124489.1|CN124489 RHOH1_5_D02.b1_A002 Acid- and alkali... 208 7e-060
gb|CW271582.1|CW271582 104_743_11403073_148_35342_001 Sorgh... 118 4e-050
gb|CW171765.1|CW171765 104_582_11155916_116_36532_070 Sorgh... 152 8e-036
gb|CW171766.1|CW171766 104_582_11155916_148_36531_070 Sorgh... 118 2e-025
>gb|BM322978.1|BM322978 PIC1_15_H10.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 576
Score = 432 bits (937), Expect = e-120
Identities = 184/189 (97%), Positives = 186/189 (98%)
Frame = +2 / +1
Query: 344 FVVLAMTLRRKPDVLVNVMPKIMGNNKYLGQEKLPIIVWVIAQASQGDLVSGMFCWAHSL 523
FVVLAM LRRKPDVLVNVMPKIMGNNKYLGQEKLPIIVWVIAQASQGDLV+GMFCWAHSL
Sbjct: 10 FVVLAMALRRKPDVLVNVMPKIMGNNKYLGQEKLPIIVWVIAQASQGDLVTGMFCWAHSL 189
Query: 524 FPTLCAKSSGNPLARDLVLQLLERILSVTKARSILLNGAVRKGERLVPPVSFDLFMRATF 703
FPTLCAKSSGNPLARDLVLQLLERILSVTKARSILLNGAVR+GERLVPPVSFDLFMRATF
Sbjct: 190 FPTLCAKSSGNPLARDLVLQLLERILSVTKARSILLNGAVRRGERLVPPVSFDLFMRATF 369
Query: 704 PVSNARVKATERFEAAYPMIKELALAGPPGSKTVKQASQQLLPLCAKAMQENNAELTREA 883
PVSNARVKATERFEAAYP IKELALAGPPGSKTVKQASQQLLPLCAKAMQENNAELTREA
Sbjct: 370 PVSNARVKATERFEAAYPTIKELALAGPPGSKTVKQASQQLLPLCAKAMQENNAELTREA 549
Query: 884 VDVFIWCLT 910
DVFIWCLT
Sbjct: 550 TDVFIWCLT 576
Score = 419 bits (910), Expect = e-116
Identities = 169/189 (89%), Positives = 176/189 (93%)
Frame = +1 / +3
Query: 343 LCCSCHDFKKKA*CTGKCYAKDNGKQ*ISGTGKASHHCLGYCSGLSR*PSVWHVLLGSFS 522
LCCSCH FKKKA*C+GKCYAKDNGKQ*IS TGKA+HHCLGYCSG+SR*PS WHVLLGSFS
Sbjct: 9 LCCSCHGFKKKA*CSGKCYAKDNGKQ*ISWTGKAAHHCLGYCSGISR*PSDWHVLLGSFS 188
Query: 523 ISHIMCEVKWESPCKRFGFAVA*KNFVCHQSSFYIIEWCC*KGRTLSSPCFI*LVHESHI 702
ISHIMC+VKWESPCKRFGFAVA*KNFVCHQSSFY+IEWCC*KG T SSPCFI*LVHESHI
Sbjct: 189 ISHIMCKVKWESPCKRFGFAVA*KNFVCHQSSFYLIEWCC*KGGTPSSPCFI*LVHESHI 368
Query: 703 SCF*CSSEGYRKV*SSLPNDQGVGSCRSSWLKNCETSITTAFTFVCKSNARKQRRAHQGG 882
SCF*CS EGY KV*SSLPN+QGVGSC SSWL NCETSITTA TFVCKSNARKQ RAHQGG
Sbjct: 369 SCF*CSGEGYGKV*SSLPNNQGVGSCWSSWL*NCETSITTAVTFVCKSNARKQCRAHQGG 548
Query: 883 C*CFHLVLN 909
*C HLVL+
Sbjct: 549 Y*CIHLVLD 575
Score = 412 bits (894), Expect = e-114
Identities = 177/189 (93%), Positives = 180/189 (95%)
Frame = -3 / -2
Query: 909 VKHQMKTSTASLVSSALFSCIAFAHKGKSCCDACFTVFEPGGPARANSLIIG*AASNLSV 730
VKHQM TS ASLVSSALFSCIAFAHKG SCCDACFTV EPGGPARANSLI+G*AASNLSV
Sbjct: 575 VKHQMNTSVASLVSSALFSCIAFAHKGNSCCDACFTVLEPGGPARANSLIVG*AASNLSV 396
Query: 729 AFTRALETGNVALMNKSNETGGTKRSPFLTAPFNNIERALVTDKILSSNCKTKSLARGFP 550
AFTRALETGNVALMNKSNETGGT+RSP LTAPFN IERALVTDKILSSNCKTKSLARGFP
Sbjct: 395 AFTRALETGNVALMNKSNETGGTRRSPLLTAPFNKIERALVTDKILSSNCKTKSLARGFP 216
Query: 549 LDFAHNVGNRE*AQQNMPDTRSP*EA*AITQTMMGSFSCPRYLLFPIIFGITFTSTSGFL 370
LDFAHNVGNRE*AQQNMP TRSP*+A*AITQTMMGSFSCPRYLLFPIIFGITFT TSGFL
Sbjct: 215 LDFAHNVGNRE*AQQNMPVTRSP*DA*AITQTMMGSFSCPRYLLFPIIFGITFTRTSGFL 36
Query: 369 LKVMARTTK 343
LK MARTTK
Sbjct: 35 LKAMARTTK 9
Score = 393 bits (853), Expect = e-108
Identities = 169/187 (90%), Positives = 174/187 (93%)
Frame = -2 / -1
Query: 904 APNENINSLPGELCVVFLHCFCTQR*KLL*CLFHSF*ARRTGKSQLLDHWVGCFKPFCSL 725
APNE I+SLPGELC+VFLHCFCTQR*+LL*CLFHSF ARRT KSQLLD WVGCFKPF SL
Sbjct: 570 APNEYISSLPGELCIVFLHCFCTQR*QLL*CLFHSFRARRTSKSQLLDCWVGCFKPFRSL 391
Query: 724 HSSIRNRKCGSHEQVK*NRGN*AFSLSNSTIQ*YRTSFGDRQNSFKQLQNQISCKGIPT* 545
H SIRNRKCGSHEQVK*NRGN*AF SNSTIQ* RTSFGDRQNSFKQLQNQISCKGIPT*
Sbjct: 390 HPSIRNRKCGSHEQVK*NRGN*AFPPSNSTIQ*DRTSFGDRQNSFKQLQNQISCKGIPT* 211
Query: 544 LRT*CGK*RMSPAKHARH*VTLRGLSNNPDNDGKLFLSQIFIVSHYLWHNIYQYIRLSS* 365
L T*CGK*RMSPAKHA H*VTLR LSNNPDNDG+LFLS+IFIVSHYLWHNIYQ IRLSS*
Sbjct: 210 LCT*CGK*RMSPAKHASH*VTLRCLSNNPDNDGQLFLSKIFIVSHYLWHNIYQNIRLSS* 31
Query: 364 SHGKNNK 344
SHGKNNK
Sbjct: 30 SHGKNNK 10
Score = 387 bits (840), Expect = e-106
Identities = 169/189 (89%), Positives = 171/189 (90%)
Frame = -1 / -3
Query: 905 STK*KHQQPPW*ALRCFLALLLHTKVKAVVMLVSQFLSQEDRQEPTP*SLGRLLQTFL*P 726
STK* HQ PPW*AL CFLALLLHTKV AVVMLVSQF SQED+QEPTP* LGRLLQTF *P
Sbjct: 571 STK*IHQ*PPW*ALHCFLALLLHTKVTAVVMLVSQF*SQEDQQEPTP*LLGRLLQTFP*P 392
Query: 725 SLEH*KQEMWLS*TSQMKQGELSVLPF*QHHSII*NELW*QTKFFQATAKPNLLQGDSHL 546
S EH*KQEMWLS*TSQMKQGEL V PF*QHHSI *NELW*QTKFFQATAKPNLLQGDSHL
Sbjct: 391 SPEH*KQEMWLS*TSQMKQGELGVPPF*QHHSIR*NELW*QTKFFQATAKPNLLQGDSHL 212
Query: 545 TSHIMWEIENEPSKTCQTLGHLERPEQ*PRQ*WEAFPVPDIYCFPLSLA*HLPVHQAFFL 366
T HIMWEIENEPSKTCQ+LGHLE PEQ*PRQ*W AFPV DIYCFPLSLA*HLP HQAFFL
Sbjct: 211 TLHIMWEIENEPSKTCQSLGHLEMPEQ*PRQ*WAAFPVQDIYCFPLSLA*HLPEHQAFFL 32
Query: 365 KSWQEQQRL 339
K WQEQQ L
Sbjct: 31 KPWQEQQSL 5
Score = 365 bits (791), Expect = e-100
Identities = 159/176 (90%), Positives = 163/176 (92%)
Frame = +3 / +2
Query: 381 MYW*MLCQR*WETINIWDRKSFPSLSGLLLRPLKVT*CLACFAGLILYFPHYVRSQVGIP 560
M+W*MLCQR*WETINI DRKS PSLSGLLLR LKVT* LACFAGLILYFPHYV+SQVGIP
Sbjct: 47 MFW*MLCQR*WETINILDRKSCPSLSGLLLRHLKVT**LACFAGLILYFPHYVQSQVGIP 226
Query: 561 LQEIWFCSCLKEFCLSPKLVLYY*MVLLERENA*FPLFHLTCS*EPHFLFLMLE*RLQKG 740
LQEIWFCSCLKEFCLSPKLVL Y*MVLLE NA*FPLFHLTCS*EPHFLFLML *RL+KG
Sbjct: 227 LQEIWFCSCLKEFCLSPKLVLSY*MVLLEGGNA*FPLFHLTCS*EPHFLFLMLG*RLRKG 406
Query: 741 LKQPTQ*SRSWLLPVLLAQKL*NKHHNSFYLCVQKQCKKTTQSSPGRLLMFSFGA* 908
LKQPTQ SRSWLL VLLA KL*NKHHNS YLCVQKQCKKT QSSPGRLLM+SFGA*
Sbjct: 407 LKQPTQQSRSWLLLVLLALKL*NKHHNSCYLCVQKQCKKTMQSSPGRLLMYSFGA* 574
>gb|BM324971.1|BM324971 PIC1_38_B08.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 561
Score = 430 bits (934), Expect = e-119
Identities = 180/184 (97%), Positives = 182/184 (98%)
Frame = +2 / +3
Query: 8 SSSYENQQDIQLMRFADYFGRAFVAVSASQFAWAKMFKESTVSKMVDIPLCHIPEAVIKT 187
S+SYENQQDIQLMRFADYFGRAFVAVSASQF WAKMFKESTVSKMVDIPLCHIPEAVIKT
Sbjct: 9 SASYENQQDIQLMRFADYFGRAFVAVSASQFPWAKMFKESTVSKMVDIPLCHIPEAVIKT 188
Query: 188 ASDWISQRSSDALGDFVLWCIDSIMSELSGPSAGPKGSKKVAQQSPRAQVAIFVVLAMTL 367
ASDWISQRSSDALGDFVLWCIDSIMSELSGPSAGPKGSKKVAQQSPRAQVAIFVVLAM L
Sbjct: 189 ASDWISQRSSDALGDFVLWCIDSIMSELSGPSAGPKGSKKVAQQSPRAQVAIFVVLAMAL 368
Query: 368 RRKPDVLVNVMPKIMGNNKYLGQEKLPIIVWVIAQASQGDLVSGMFCWAHSLFPTLCAKS 547
RRKPDVLVNVMPKIMGNNKYLGQEKLPIIVWVIAQASQGDLV+GMFCWAHSLFPTLCAKS
Sbjct: 369 RRKPDVLVNVMPKIMGNNKYLGQEKLPIIVWVIAQASQGDLVTGMFCWAHSLFPTLCAKS 548
Query: 548 SGNP 559
SGNP
Sbjct: 549 SGNP 560
Score = 403 bits (875), Expect = e-111
Identities = 174/185 (94%), Positives = 178/185 (96%)
Frame = -3 / -3
Query: 558 GFPLDFAHNVGNRE*AQQNMPDTRSP*EA*AITQTMMGSFSCPRYLLFPIIFGITFTSTS 379
GFPLDFAHNVGNRE*AQQNMP TRSP*+A*AITQTMMGSFSCPRYLLFPIIFGITFT TS
Sbjct: 559 GFPLDFAHNVGNRE*AQQNMPVTRSP*DA*AITQTMMGSFSCPRYLLFPIIFGITFTRTS 380
Query: 378 GFLLKVMARTTKIATWALGDCCATFFEPLGPADGPDNSDMMLSIHHKTKSPRASEDL*LI 199
GFLLK MARTTKIAT ALGDC ATFFEPLGPADGPDNSDMMLSIHHKTKSPRASEDL*LI
Sbjct: 379 GFLLKAMARTTKIAT*ALGDC*ATFFEPLGPADGPDNSDMMLSIHHKTKSPRASEDL*LI 200
Query: 198 QSLAVLMTASGIWHSGMSTILDTVDSLNIFAHANWDALTATNARPK*SANLMS*MSC*FS 19
QSLAVLMTASGIWH+GMSTILDTVDSLNIFAH NWDALTATNARPK*SANLMS*MSC*FS
Sbjct: 199 QSLAVLMTASGIWHNGMSTILDTVDSLNIFAHGNWDALTATNARPK*SANLMS*MSC*FS 20
Query: 18 YDDEI 4
YD ++
Sbjct: 19 YDADL 5
Score = 394 bits (854), Expect = e-108
Identities = 164/181 (90%), Positives = 170/181 (93%)
Frame = -2 / -2
Query: 559 GIPT*LRT*CGK*RMSPAKHARH*VTLRGLSNNPDNDGKLFLSQIFIVSHYLWHNIYQYI 380
GIPT*L T*CGK*RMSPAKHA H*VTLR LSNNPDNDG+LFLS+IFIVSHYLWHNIYQ I
Sbjct: 560 GIPT*LCT*CGK*RMSPAKHASH*VTLRCLSNNPDNDGQLFLSKIFIVSHYLWHNIYQNI 381
Query: 379 RLSS*SHGKNNKDCNLGPWRLLCNLL*TLRAS*WT*QFRHDAIYTPQNKVSQGIRRSLTD 200
RLSS*SHGKNNKDCNL PWRLL NLL*TLR+ *W *QFRHDA+YTPQNKVSQGIRRSLTD
Sbjct: 380 RLSS*SHGKNNKDCNLSPWRLLSNLL*TLRSC*WA*QFRHDAVYTPQNKVSQGIRRSLTD 201
Query: 199 PITRSLDDSLRNMAQWDVNHLRHC*FLEHLCPCKLGCAYSYKCPAKVISKPHELNVLLIL 20
PITRSLDDSLRNMAQW+VNHL HC*FLEHLCP +LGC YSYKCPAKVISKPHELNVLLIL
Sbjct: 200 PITRSLDDSLRNMAQWNVNHLGHC*FLEHLCPWELGCTYSYKCPAKVISKPHELNVLLIL 21
Query: 19 V 17
V
Sbjct: 20 V 18
Score = 379 bits (821), Expect = e-104
Identities = 164/186 (88%), Positives = 166/186 (89%)
Frame = -1 / -1
Query: 560 GDSHLTSHIMWEIENEPSKTCQTLGHLERPEQ*PRQ*WEAFPVPDIYCFPLSLA*HLPVH 381
GDSHLT HIMWEIENEPSKTCQ+LGHLE PEQ*PRQ*W AFPV DIYCFPLSLA*HLP H
Sbjct: 561 GDSHLTLHIMWEIENEPSKTCQSLGHLEMPEQ*PRQ*WAAFPVQDIYCFPLSLA*HLPEH 382
Query: 380 QAFFLKSWQEQQRLQPGPLETVVQPSLNP*GQLMDLTIQT*CYLYTTKQSLPGHQKIFD* 201
QAFFLK WQEQQRLQP PLE V QPSLNP* LM LTIQT*C LYTTKQSLPGHQKIFD*
Sbjct: 381 QAFFLKPWQEQQRLQPEPLEIVEQPSLNP*VLLMGLTIQT*CCLYTTKQSLPGHQKIFD* 202
Query: 200 SNHSQS**QPQEYGTVGCQPS*TLLIP*TSLPMQIGMRLQLQMPGQSNQQTS*VECPVDS 21
SNHSQS**QPQEYGT+ CQPS TLLIP*TSLPM IGM LQLQMPGQSNQQTS*VECPVDS
Sbjct: 201 SNHSQS**QPQEYGTMECQPSWTLLIP*TSLPMGIGMHLQLQMPGQSNQQTS*VECPVDS 22
Query: 20 RMMTRS 3
R M S
Sbjct: 21 RTMPTS 4
Score = 210 bits (452), Expect(2) = 1e-098
Identities = 81/93 (87%), Positives = 87/93 (93%)
Frame = +1 / +2
Query: 280 ISWP*GFKEGCTTVSKGPGCNLCCSCHDFKKKA*CTGKCYAKDNGKQ*ISGTGKASHHCL 459
IS *GFKEGC+T+SKG GCNLCCSCH FKKKA*C+GKCYAKDNGKQ*IS TGKA+HHCL
Sbjct: 281 ISRT*GFKEGCSTISKGSGCNLCCSCHGFKKKA*CSGKCYAKDNGKQ*ISWTGKAAHHCL 460
Query: 460 GYCSGLSR*PSVWHVLLGSFSISHIMCEVKWES 558
GYCSG+SR*PS WHVLLGSFSISHIMC+VKWES
Sbjct: 461 GYCSGISR*PSDWHVLLGSFSISHIMCKVKWES 559
Score = 172 bits (371), Expect(2) = 1e-098
Identities = 70/76 (92%), Positives = 71/76 (93%)
Frame = +1 / +2
Query: 13 IIRESTGHSTHEVC*LLWPGICSCKRIPICMGKDVQGINSV*DG*HPTVPYS*GCHQDCE 192
I+RESTGHSTHEVC*LLWPGICSCK IPI MGKDVQGINSV DG*H VPYS*GCHQDCE
Sbjct: 14 IVRESTGHSTHEVC*LLWPGICSCKCIPIPMGKDVQGINSVQDG*HSIVPYS*GCHQDCE 193
Query: 193 *LDQSKIF*CPGRLCF 240
*LDQSKIF*CPGRLCF
Sbjct: 194 *LDQSKIF*CPGRLCF 241
Score = 160 bits (345), Expect(3) = 1e-073
Identities = 67/76 (88%), Positives = 68/76 (89%)
Frame = +3 / +1
Query: 108 QRCSRNQQCLRWLTSHCAIFLRLSSRLRVIGSVKDLLMPWETLFCGV*IASCLNCQVHQL 287
QRCSRNQQC RWLT HCAIFLRLSSRLRVIGSVKDLLMPWETLFCGV* ASCLNCQ HQ
Sbjct: 109 QRCSRNQQCPRWLTFHCAIFLRLSSRLRVIGSVKDLLMPWETLFCGV*TASCLNCQAHQQ 288
Query: 288 ALRVQRRLHNSLQGPR 335
LRVQRRL N+LQG R
Sbjct: 289 DLRVQRRLLNNLQGLR 336
Score = 126 bits (270), Expect(3) = 1e-073
Identities = 54/60 (90%), Positives = 56/60 (93%)
Frame = +3 / +1
Query: 381 MYW*MLCQR*WETINIWDRKSFPSLSGLLLRPLKVT*CLACFAGLILYFPHYVRSQVGIP 560
M+W*MLCQR*WETINI DRKS PSLSGLLLR LKVT* LACFAGLILYFPHYV+SQVGIP
Sbjct: 382 MFW*MLCQR*WETINILDRKSCPSLSGLLLRHLKVT**LACFAGLILYFPHYVQSQVGIP 561
Score = 30.4 bits (60), Expect(3) = 1e-073
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +3 / +1
Query: 9 RHHTRINRTFNS* 47
RH TRINRTFNS*
Sbjct: 10 RHRTRINRTFNS* 48
>gb|CN124566.1|CN124566 RHOH1_5_D02.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_5_D02_A002 5', mRNA sequence
Length = 655
Score = 370 bits (803), Expect(2) = e-110
Identities = 157/163 (96%), Positives = 160/163 (98%)
Frame = +2 / +3
Query: 368 RRKPDVLVNVMPKIMGNNKYLGQEKLPIIVWVIAQASQGDLVSGMFCWAHSLFPTLCAKS 547
RRKPDVLVNVMPK+MGNNKYLGQEKLP IVWVIAQASQGDLV+GMFCWAHSLFPTLCAKS
Sbjct: 6 RRKPDVLVNVMPKLMGNNKYLGQEKLPFIVWVIAQASQGDLVTGMFCWAHSLFPTLCAKS 185
Query: 548 SGNPLARDLVLQLLERILSVTKARSILLNGAVRKGERLVPPVSFDLFMRATFPVSNARVK 727
SGNPL RDLVLQLLERILSVTKARSILLNGAVR+GERLVPPVSFDLFMRATFPVSNARVK
Sbjct: 186 SGNPLTRDLVLQLLERILSVTKARSILLNGAVRRGERLVPPVSFDLFMRATFPVSNARVK 365
Query: 728 ATERFEAAYPMIKELALAGPPGSKTVKQASQQLLPLCAKAMQE 856
ATERFEAAYP IKELALAGPPGSKTVKQASQQLLPLCAKAMQE
Sbjct: 366 ATERFEAAYPTIKELALAGPPGSKTVKQASQQLLPLCAKAMQE 494
Score = 360 bits (780), Expect(2) = e-104
Identities = 154/171 (90%), Positives = 158/171 (92%)
Frame = -3 / -1
Query: 879 SLVSSALFSCIAFAHKGKSCCDACFTVFEPGGPARANSLIIG*AASNLSVAFTRALETGN 700
S+ S FSCIAFAHKG SCCDACFTV EPGGPARANSLI+G*AASNLSVAFTRALETGN
Sbjct: 517 SVASLVSFSCIAFAHKGNSCCDACFTVLEPGGPARANSLIVG*AASNLSVAFTRALETGN 338
Query: 699 VALMNKSNETGGTKRSPFLTAPFNNIERALVTDKILSSNCKTKSLARGFPLDFAHNVGNR 520
VALMNKSNETGGT+RSP LTAPFN IERALVTDKILSSNCKTKSL RGFPLDFAHNVGNR
Sbjct: 337 VALMNKSNETGGTRRSPLLTAPFNKIERALVTDKILSSNCKTKSLVRGFPLDFAHNVGNR 158
Query: 519 E*AQQNMPDTRSP*EA*AITQTMMGSFSCPRYLLFPIIFGITFTSTSGFLL 367
E*AQQNMP TRSP*+A*AITQTM GSFSCPRYLLFPI FGITFT TSGFLL
Sbjct: 157 E*AQQNMPVTRSP*DA*AITQTMKGSFSCPRYLLFPINFGITFTRTSGFLL 5
Score = 353 bits (766), Expect(2) = e-104
Identities = 146/164 (89%), Positives = 152/164 (92%)
Frame = +1 / +2
Query: 367 KKKA*CTGKCYAKDNGKQ*ISGTGKASHHCLGYCSGLSR*PSVWHVLLGSFSISHIMCEV 546
KKKA*C+GKCYAK NGKQ*IS TGKA+ HCLGYCSG+SR*PS WHVLLGSFSISHIMC+V
Sbjct: 5 KKKA*CSGKCYAKVNGKQ*ISWTGKAALHCLGYCSGISR*PSDWHVLLGSFSISHIMCKV 184
Query: 547 KWESPCKRFGFAVA*KNFVCHQSSFYIIEWCC*KGRTLSSPCFI*LVHESHISCF*CSSE 726
KWESP KRFGFAVA*KNFVCHQSSFY+IEWCC*KG T SSPCFI*LVHESHISCF*CS E
Sbjct: 185 KWESPYKRFGFAVA*KNFVCHQSSFYLIEWCC*KGGTPSSPCFI*LVHESHISCF*CSGE 364
Query: 727 GYRKV*SSLPNDQGVGSCRSSWLKNCETSITTAFTFVCKSNARK 858
GY KV*SSLPN+QGVGSC SSWL NCETSITTA TFVCKSNARK
Sbjct: 365 GYGKV*SSLPNNQGVGSCWSSWL*NCETSITTAVTFVCKSNARK 496
Score = 336 bits (727), Expect(2) = 1e-097
Identities = 146/164 (89%), Positives = 151/164 (92%)
Frame = -2 / -3
Query: 859 VFLHCFCTQR*KLL*CLFHSF*ARRTGKSQLLDHWVGCFKPFCSLHSSIRNRKCGSHEQV 680
+FLHCFCTQR*+LL*CLFHSF ARRT KSQLLD WVGCFKPF SLH SIRNRKCGSHEQV
Sbjct: 497 LFLHCFCTQR*QLL*CLFHSFRARRTSKSQLLDCWVGCFKPFRSLHPSIRNRKCGSHEQV 318
Query: 679 K*NRGN*AFSLSNSTIQ*YRTSFGDRQNSFKQLQNQISCKGIPT*LRT*CGK*RMSPAKH 500
K*NRGN*AF SNSTIQ* RTSFGDRQNSFKQLQNQISCKGIPT*L T*CGK*RMSPAKH
Sbjct: 317 K*NRGN*AFPPSNSTIQ*DRTSFGDRQNSFKQLQNQISCKGIPT*LCT*CGK*RMSPAKH 138
Query: 499 ARH*VTLRGLSNNPDNDGKLFLSQIFIVSHYLWHNIYQYIRLSS 368
A H*VTLR LSNNPDN+G+LFLS+IFIVSH LWHNIYQ IRLSS
Sbjct: 137 ASH*VTLRCLSNNPDNEGQLFLSKIFIVSH*LWHNIYQNIRLSS 6
Score = 330 bits (715), Expect(2) = 1e-096
Identities = 143/161 (88%), Positives = 148/161 (91%)
Frame = +3 / +1
Query: 381 MYW*MLCQR*WETINIWDRKSFPSLSGLLLRPLKVT*CLACFAGLILYFPHYVRSQVGIP 560
M+W*MLCQ *WETINI DRKS PSLSGLLLR LKVT* LACFAGLILYFPHYV+SQVGIP
Sbjct: 19 MFW*MLCQS*WETINILDRKSCPSLSGLLLRHLKVT**LACFAGLILYFPHYVQSQVGIP 198
Query: 561 LQEIWFCSCLKEFCLSPKLVLYY*MVLLERENA*FPLFHLTCS*EPHFLFLMLE*RLQKG 740
LQEIWFCSCLKEFCLSPKLVL Y*MVLLE NA*FPLFHLTCS*EPHFLFLML *RL+KG
Sbjct: 199 LQEIWFCSCLKEFCLSPKLVLSY*MVLLEGGNA*FPLFHLTCS*EPHFLFLMLG*RLRKG 378
Query: 741 LKQPTQ*SRSWLLPVLLAQKL*NKHHNSFYLCVQKQCKKTT 863
LKQPTQ SRSWLL VLLA KL*NKHHNS YLCVQKQCKK++
Sbjct: 379 LKQPTQQSRSWLLLVLLALKL*NKHHNSCYLCVQKQCKKSS 501
Score = 327 bits (708), Expect(2) = 5e-094
Identities = 145/163 (88%), Positives = 148/163 (90%)
Frame = -1 / -2
Query: 857 FLALLLHTKVKAVVMLVSQFLSQEDRQEPTP*SLGRLLQTFL*PSLEH*KQEMWLS*TSQ 678
FLALLLHTKV AVVMLVSQF SQED+QEPTP* LGRLLQTF *PS EH*KQEMWLS*TSQ
Sbjct: 495 FLALLLHTKVTAVVMLVSQF*SQEDQQEPTP*LLGRLLQTFP*PSPEH*KQEMWLS*TSQ 316
Query: 677 MKQGELSVLPF*QHHSII*NELW*QTKFFQATAKPNLLQGDSHLTSHIMWEIENEPSKTC 498
MKQGEL V PF*QHHSI *NELW*QTKFFQATAKPNLL GDSHLT HIMWEIENEPSKTC
Sbjct: 315 MKQGELGVPPF*QHHSIR*NELW*QTKFFQATAKPNLL*GDSHLTLHIMWEIENEPSKTC 136
Query: 497 QTLGHLERPEQ*PRQ*WEAFPVPDIYCFPLSLA*HLPVHQAFF 369
Q+LGHLE PEQ*PRQ* AFPV DIYCFPL+LA*HLP HQAFF
Sbjct: 135 QSLGHLEMPEQ*PRQ*RAAFPVQDIYCFPLTLA*HLPEHQAFF 7
Score = 51.5 bits (106), Expect(2) = e-110
Identities = 19/22 (86%), Positives = 21/22 (95%)
Frame = +2 / +3
Query: 866 ELTREAVDVFIWCLTQNAESYK 931
+LTREA DVFIWCLTQNA+SYK
Sbjct: 495 KLTREATDVFIWCLTQNAQSYK 560
Score = 46.9 bits (96), Expect(2) = e-104
Identities = 18/24 (75%), Positives = 21/24 (87%)
Frame = +1 / +2
Query: 862 RRAHQGGC*CFHLVLNSKCRVVQA 933
R+AHQGG *C HLVL+SKC V+QA
Sbjct: 491 RKAHQGGY*CIHLVLDSKCTVLQA 562
Score = 45.5 bits (93), Expect(2) = 1e-096
Identities = 20/27 (74%), Positives = 23/27 (85%)
Frame = +3 / +1
Query: 852 KKTTQSSPGRLLMFSFGA*LKMQSRTS 932
K+ +SSPGRLLM+SFGA*LKM S TS
Sbjct: 481 KQCKKSSPGRLLMYSFGA*LKMHSPTS 561
Score = 43.2 bits (88), Expect(2) = 1e-097
Identities = 18/27 (66%), Positives = 19/27 (70%)
Frame = -1 / -2
Query: 932 ACTTLHFELSTK*KHQQPPW*ALRCFL 852
AC T+HFE STK* HQ PPW*A L
Sbjct: 561 ACRTVHFESSTK*IHQ*PPW*AFLALL 481
Score = 40.5 bits (82), Expect(2) = e-104
Identities = 18/22 (81%), Positives = 19/22 (86%)
Frame = -2 / -3
Query: 931 LVRLCILS*APNENINSLPGEL 866
LV LCILS APNE I+SLPGEL
Sbjct: 560 LVGLCILSQAPNEYISSLPGEL 495
Score = 40.0 bits (81), Expect(2) = 5e-094
Identities = 18/22 (81%), Positives = 18/22 (81%)
Frame = -3 / -1
Query: 933 CLYDSAF*VKHQMKTSTASLVS 868
CL D AF*VKHQM TS ASLVS
Sbjct: 562 CL*DCAF*VKHQMNTSVASLVS 497
>gb|CN124489.1|CN124489 RHOH1_5_D02.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_5_D02_A002 3', mRNA sequence
Length = 818
Score = 208 bits (448), Expect(2) = 2e-058
Identities = 88/99 (88%), Positives = 91/99 (91%)
Frame = -3 / -2
Query: 879 SLVSSALFSCIAFAHKGKSCCDACFTVFEPGGPARANSLIIG*AASNLSVAFTRALETGN 700
S+ S FSCIAFAHKG SCCDACFTV EPGGPARANSLI+G*AASNLSVAFTRALETGN
Sbjct: 298 SVASLGSFSCIAFAHKGNSCCDACFTVLEPGGPARANSLIVG*AASNLSVAFTRALETGN 119
Query: 699 VALMNKSNETGGTKRSPFLTAPFNNIERALVTDKILSSN 583
VALMNKSNETGGT+RSP LTAPFN IERALVTDKILSSN
Sbjct: 118 VALMNKSNETGGTRRSPLLTAPFNKIERALVTDKILSSN 2
Score = 203 bits (437), Expect(2) = 7e-060
Identities = 89/91 (97%), Positives = 90/91 (98%)
Frame = +2 / +3
Query: 584 LLERILSVTKARSILLNGAVRKGERLVPPVSFDLFMRATFPVSNARVKATERFEAAYPMI 763
LLERILSVTKARSILLNGAVR+GERLVPPVSFDLFMRATFPVSNARVKATERFEAAYP I
Sbjct: 3 LLERILSVTKARSILLNGAVRRGERLVPPVSFDLFMRATFPVSNARVKATERFEAAYPTI 182
Query: 764 KELALAGPPGSKTVKQASQQLLPLCAKAMQE 856
KELALAGPPGSKTVKQASQQLLPLCAKAMQE
Sbjct: 183 KELALAGPPGSKTVKQASQQLLPLCAKAMQE 275
Score = 200 bits (431), Expect(2) = 2e-058
Identities = 83/92 (90%), Positives = 85/92 (92%)
Frame = +1 / +2
Query: 583 VA*KNFVCHQSSFYIIEWCC*KGRTLSSPCFI*LVHESHISCF*CSSEGYRKV*SSLPND 762
VA*KNFVCHQSSFY+IEWCC*KG T SSPCFI*LVHESHISCF*CS EGY KV*SSLPN+
Sbjct: 2 VA*KNFVCHQSSFYLIEWCC*KGGTPSSPCFI*LVHESHISCF*CSGEGYGKV*SSLPNN 181
Query: 763 QGVGSCRSSWLKNCETSITTAFTFVCKSNARK 858
QGVGSC SSWL NCETSITTA TFVCKSNARK
Sbjct: 182 QGVGSCWSSWL*NCETSITTAVTFVCKSNARK 277
Score = 191 bits (412), Expect(2) = 4e-054
Identities = 82/92 (89%), Positives = 84/92 (91%)
Frame = -2 / -1
Query: 859 VFLHCFCTQR*KLL*CLFHSF*ARRTGKSQLLDHWVGCFKPFCSLHSSIRNRKCGSHEQV 680
+FLHCFCTQR*+LL*CLFHSF ARRT KSQLLD WVGCFKPF SLH SIRNRKCGSHEQV
Sbjct: 278 LFLHCFCTQR*QLL*CLFHSFRARRTSKSQLLDCWVGCFKPFRSLHPSIRNRKCGSHEQV 99
Query: 679 K*NRGN*AFSLSNSTIQ*YRTSFGDRQNSFKQ 584
K*NRGN*AF SNSTIQ* RTSFGDRQNSFKQ
Sbjct: 98 K*NRGN*AFPPSNSTIQ*DRTSFGDRQNSFKQ 3
Score = 189 bits (407), Expect(2) = 3e-054
Identities = 83/94 (88%), Positives = 86/94 (91%)
Frame = +3 / +1
Query: 582 SCLKEFCLSPKLVLYY*MVLLERENA*FPLFHLTCS*EPHFLFLMLE*RLQKGLKQPTQ* 761
SCLKEFCLSPKLVL Y*MVLLE NA*FPLFHLTCS*EPHFLFLML *RL+KGLKQPTQ
Sbjct: 1 SCLKEFCLSPKLVLSY*MVLLEGGNA*FPLFHLTCS*EPHFLFLMLG*RLRKGLKQPTQQ 180
Query: 762 SRSWLLPVLLAQKL*NKHHNSFYLCVQKQCKKTT 863
SRSWLL VLLA KL*NKHHNS YLCVQKQCKK++
Sbjct: 181 SRSWLLLVLLALKL*NKHHNSCYLCVQKQCKKSS 282
Score = 179 bits (385), Expect(2) = 2e-049
Identities = 83/92 (90%), Positives = 84/92 (91%)
Frame = -1 / -3
Query: 857 FLALLLHTKVKAVVMLVSQFLSQEDRQEPTP*SLGRLLQTFL*PSLEH*KQEMWLS*TSQ 678
FLALLLHTKV AVVMLVSQF SQED+QEPTP* LGRLLQTF *PS EH*KQEMWLS*TSQ
Sbjct: 276 FLALLLHTKVTAVVMLVSQF*SQEDQQEPTP*LLGRLLQTFP*PSPEH*KQEMWLS*TSQ 97
Query: 677 MKQGELSVLPF*QHHSII*NELW*QTKFFQAT 582
MKQGEL V PF*QHHSI *NELW*QTKFFQAT
Sbjct: 96 MKQGELGVPPF*QHHSIR*NELW*QTKFFQAT 1
Score = 50.1 bits (103), Expect(2) = 7e-060
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = +2 / +3
Query: 866 ELTREAVDVFIWCLTQNAESYK 931
+L REA DVFIWCLTQNAESYK
Sbjct: 276 KLPREATDVFIWCLTQNAESYK 341
Score = 47.8 bits (98), Expect(2) = 2e-058
Identities = 21/27 (77%), Positives = 24/27 (88%)
Frame = +3 / +1
Query: 852 KKTTQSSPGRLLMFSFGA*LKMQSRTS 932
K+ +SSPGRLLM+SFGA*LKMQS TS
Sbjct: 262 KQCKKSSPGRLLMYSFGA*LKMQSPTS 342
Score = 45.1 bits (92), Expect(2) = 3e-054
Identities = 18/24 (75%), Positives = 21/24 (87%)
Frame = +1 / +2
Query: 862 RRAHQGGC*CFHLVLNSKCRVVQA 933
R+A QGG *C HLVL+SKCRV+QA
Sbjct: 272 RKAPQGGY*CIHLVLDSKCRVLQA 343
Score = 42.3 bits (86), Expect(2) = 4e-054
Identities = 18/27 (66%), Positives = 18/27 (66%)
Frame = -1 / -3
Query: 932 ACTTLHFELSTK*KHQQPPW*ALRCFL 852
AC TLHFE STK* HQ PPW A L
Sbjct: 342 ACRTLHFESSTK*IHQ*PPWGAFLALL 262
Score = 40.5 bits (82), Expect(2) = 2e-058
Identities = 18/22 (81%), Positives = 19/22 (86%)
Frame = -2 / -1
Query: 931 LVRLCILS*APNENINSLPGEL 866
LV LCILS APNE I+SLPGEL
Sbjct: 341 LVGLCILSQAPNEYISSLPGEL 276
Score = 39.1 bits (79), Expect(2) = 2e-049
Identities = 18/22 (81%), Positives = 18/22 (81%)
Frame = -3 / -2
Query: 933 CLYDSAF*VKHQMKTSTASLVS 868
CL DSAF*VKHQM TS ASL S
Sbjct: 343 CL*DSAF*VKHQMNTSVASLGS 278
>gb|CW271582.1|CW271582 104_743_11403073_148_35342_001 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11403073, DNA
sequence
Length = 707
Score = 118 bits (252), Expect(2) = 4e-050
Identities = 43/47 (91%), Positives = 45/47 (95%)
Frame = +1 / -3
Query: 334 GCNLCCSCHDFKKKA*CTGKCYAKDNGKQ*ISGTGKASHHCLGYCSG 474
GCNLCCSCH FKKKA*C+GKCYAKDNGKQ*IS TGKA+HHCLGYCSG
Sbjct: 474 GCNLCCSCHGFKKKA*CSGKCYAKDNGKQ*ISWTGKAAHHCLGYCSG 334
Score = 111 bits (238), Expect(2) = 2e-047
Identities = 44/47 (93%), Positives = 46/47 (97%)
Frame = -2 / +3
Query: 472 LSNNPDNDGKLFLSQIFIVSHYLWHNIYQYIRLSS*SHGKNNKDCNL 332
LSNNPDNDG+LFLS+IFIVSHYLWHNIYQ IRLSS*SHGKNNKDCNL
Sbjct: 336 LSNNPDNDGQLFLSKIFIVSHYLWHNIYQNIRLSS*SHGKNNKDCNL 476
Score = 108 bits (230), Expect(2) = 2e-045
Identities = 46/47 (97%), Positives = 46/47 (97%)
Frame = +2 / -1
Query: 332 QVAIFVVLAMTLRRKPDVLVNVMPKIMGNNKYLGQEKLPIIVWVIAQ 472
QVAIFVVLAM LRRKPDVLVNVMPKIMGNNKYLGQEKLPIIVWVIAQ
Sbjct: 476 QVAIFVVLAMALRRKPDVLVNVMPKIMGNNKYLGQEKLPIIVWVIAQ 336
Score = 107 bits (228), Expect(2) = 5e-044
Identities = 43/47 (91%), Positives = 43/47 (91%)
Frame = -1 / +2
Query: 473 PEQ*PRQ*WEAFPVPDIYCFPLSLA*HLPVHQAFFLKSWQEQQRLQP 333
PEQ*PRQ*W AFPV DIYCFPLSLA*HLP HQAFFLK WQEQQRLQP
Sbjct: 335 PEQ*PRQ*WAAFPVQDIYCFPLSLA*HLPEHQAFFLKPWQEQQRLQP 475
Score = 102 bits (218), Expect(2) = 4e-040
Identities = 44/46 (95%), Positives = 44/46 (95%)
Frame = -3 / +1
Query: 471 *AITQTMMGSFSCPRYLLFPIIFGITFTSTSGFLLKVMARTTKIAT 334
*AITQTMMGSFSCPRYLLFPIIFGITFT TSGFLLK MARTTKIAT
Sbjct: 337 *AITQTMMGSFSCPRYLLFPIIFGITFTRTSGFLLKAMARTTKIAT 474
Score = 102 bits (217), Expect(2) = 4e-050
Identities = 41/42 (97%), Positives = 42/42 (100%)
Frame = +2 / -2
Query: 470 QASQGDLVSGMFCWAHSLFPTLCAKSSGNPLARDLVLQLLER 595
QASQGDLV+GMFCWAHSLFPTLCAKSSGNPLARDLVLQLLER
Sbjct: 232 QASQGDLVTGMFCWAHSLFPTLCAKSSGNPLARDLVLQLLER 107
Score = 99.6 bits (211), Expect(2) = 2e-047
Identities = 39/44 (88%), Positives = 40/44 (90%)
Frame = -1 / +1
Query: 602 TKFFQATAKPNLLQGDSHLTSHIMWEIENEPSKTCQTLGHLERP 471
T FQATAKPNLLQGDSHLT HIMWEIENEPSKTCQ+LGHLE P
Sbjct: 100 TNTFQATAKPNLLQGDSHLTLHIMWEIENEPSKTCQSLGHLEMP 231
Score = 96.8 bits (205), Expect(2) = 2e-045
Identities = 39/45 (86%), Positives = 42/45 (93%)
Frame = +1 / -1
Query: 469 SGLSR*PSVWHVLLGSFSISHIMCEVKWESPCKRFGFAVA*KNFV 603
+G+SR*PS WHVLLGSFSISHIMC+VKWESPCKRFGFAVA*K V
Sbjct: 233 AGISR*PSDWHVLLGSFSISHIMCKVKWESPCKRFGFAVA*KVLV 99
Score = 94.1 bits (199), Expect(2) = 1e-032
Identities = 38/41 (92%), Positives = 39/41 (95%)
Frame = +3 / -3
Query: 471 RPLKVT*CLACFAGLILYFPHYVRSQVGIPLQEIWFCSCLK 593
R LKVT* LACFAGLILYFPHYV+SQVGIPLQEIWFCSCLK
Sbjct: 231 RHLKVT**LACFAGLILYFPHYVQSQVGIPLQEIWFCSCLK 109
Score = 92.7 bits (196), Expect(2) = 5e-044
Identities = 39/41 (95%), Positives = 40/41 (97%)
Frame = -3 / +3
Query: 594 LSSNCKTKSLARGFPLDFAHNVGNRE*AQQNMPDTRSP*EA 472
LSSNCKTKSLARGFPLDFAHNVGNRE*AQQNMP TRSP*+A
Sbjct: 108 LSSNCKTKSLARGFPLDFAHNVGNRE*AQQNMPVTRSP*DA 230
Score = 84.5 bits (178), Expect(2) = 4e-040
Identities = 38/41 (92%), Positives = 38/41 (92%)
Frame = -2 / +2
Query: 592 FKQLQNQISCKGIPT*LRT*CGK*RMSPAKHARH*VTLRGL 470
FKQLQNQISCKGIPT*L T*CGK*RMSPAKHA H*VTLR L
Sbjct: 110 FKQLQNQISCKGIPT*LCT*CGK*RMSPAKHASH*VTLRCL 232
Score = 68.0 bits (142), Expect(2) = 1e-032
Identities = 28/31 (90%), Positives = 29/31 (93%)
Frame = +3 / -2
Query: 381 MYW*MLCQR*WETINIWDRKSFPSLSGLLLR 473
M+W*MLCQR*WETINI DRKS PSLSGLLLR
Sbjct: 427 MFW*MLCQR*WETINILDRKSCPSLSGLLLR 335
>gb|CW171765.1|CW171765 104_582_11155916_116_36532_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11155916, DNA
sequence
Length = 661
Score = 152 bits (327), Expect = 8e-036
Identities = 63/63 (100%), Positives = 63/63 (100%)
Frame = +2 / +3
Query: 149 IPLCHIPEAVIKTASDWISQRSSDALGDFVLWCIDSIMSELSGPSAGPKGSKKVAQQSPR 328
IPLCHIPEAVIKTASDWISQRSSDALGDFVLWCIDSIMSELSGPSAGPKGSKKVAQQSPR
Sbjct: 282 IPLCHIPEAVIKTASDWISQRSSDALGDFVLWCIDSIMSELSGPSAGPKGSKKVAQQSPR 461
Query: 329 AQV 337
AQV
Sbjct: 462 AQV 470
Score = 141 bits (302), Expect = 2e-032
Identities = 59/63 (93%), Positives = 61/63 (96%)
Frame = -3 / -1
Query: 336 TWALGDCCATFFEPLGPADGPDNSDMMLSIHHKTKSPRASEDL*LIQSLAVLMTASGIWH 157
T ALGDC ATFFEPLGPADGPDNSDMMLSIHHKTKSPRASEDL*LIQSLAVLMTASGIWH
Sbjct: 469 T*ALGDC*ATFFEPLGPADGPDNSDMMLSIHHKTKSPRASEDL*LIQSLAVLMTASGIWH 290
Query: 156 SGM 148
+G+
Sbjct: 289 NGI 281
Score = 137 bits (294), Expect = 3e-031
Identities = 56/65 (86%), Positives = 60/65 (92%)
Frame = -2 / -3
Query: 340 CNLGPWRLLCNLL*TLRAS*WT*QFRHDAIYTPQNKVSQGIRRSLTDPITRSLDDSLRNM 161
C L PWRLL NLL*TLR+ *W *QFRHDA+YTPQNKVSQGIRRSLTDPITRSLDDSLRNM
Sbjct: 473 CYLSPWRLLSNLL*TLRSC*WA*QFRHDAVYTPQNKVSQGIRRSLTDPITRSLDDSLRNM 294
Query: 160 AQWDV 146
AQW++
Sbjct: 293 AQWNL 279
Score = 127 bits (272), Expect = 3e-028
Identities = 54/61 (88%), Positives = 55/61 (90%)
Frame = +3 / +1
Query: 153 HCAIFLRLSSRLRVIGSVKDLLMPWETLFCGV*IASCLNCQVHQLALRVQRRLHNSLQGP 332
HCAIFLRLSSRLRVIGSVKDLLMPWETLFCGV* ASCLNCQ HQ LRVQRRL N+LQG
Sbjct: 286 HCAIFLRLSSRLRVIGSVKDLLMPWETLFCGV*TASCLNCQAHQQDLRVQRRLLNNLQGL 465
Query: 333 R 335
R
Sbjct: 466 R 468
Score = 117 bits (251), Expect = 2e-025
Identities = 53/61 (86%), Positives = 54/61 (88%)
Frame = -1 / -2
Query: 335 PGPLETVVQPSLNP*GQLMDLTIQT*CYLYTTKQSLPGHQKIFD*SNHSQS**QPQEYGT 156
P PLE V QPSLNP* LM LTIQT*C LYTTKQSLPGHQKIFD*SNHSQS**QPQEYGT
Sbjct: 468 PEPLEIVEQPSLNP*VLLMGLTIQT*CCLYTTKQSLPGHQKIFD*SNHSQS**QPQEYGT 289
Query: 155 V 153
+
Sbjct: 288 M 286
>gb|CW171766.1|CW171766 104_582_11155916_148_36531_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11155916, DNA
sequence
Length = 737
Score = 118 bits (252), Expect = 2e-025
Identities = 43/47 (91%), Positives = 45/47 (95%)
Frame = +1 / -1
Query: 334 GCNLCCSCHDFKKKA*CTGKCYAKDNGKQ*ISGTGKASHHCLGYCSG 474
GCNLCCSCH FKKKA*C+GKCYAKDNGKQ*IS TGKA+HHCLGYCSG
Sbjct: 224 GCNLCCSCHGFKKKA*CSGKCYAKDNGKQ*ISWTGKAAHHCLGYCSG 84
Score = 111 bits (238), Expect = 1e-023
Identities = 44/47 (93%), Positives = 46/47 (97%)
Frame = -2 / +2
Query: 472 LSNNPDNDGKLFLSQIFIVSHYLWHNIYQYIRLSS*SHGKNNKDCNL 332
LSNNPDNDG+LFLS+IFIVSHYLWHNIYQ IRLSS*SHGKNNKDCNL
Sbjct: 86 LSNNPDNDGQLFLSKIFIVSHYLWHNIYQNIRLSS*SHGKNNKDCNL 226
Score = 108 bits (230), Expect = 2e-022
Identities = 46/47 (97%), Positives = 46/47 (97%)
Frame = +2 / -2
Query: 332 QVAIFVVLAMTLRRKPDVLVNVMPKIMGNNKYLGQEKLPIIVWVIAQ 472
QVAIFVVLAM LRRKPDVLVNVMPKIMGNNKYLGQEKLPIIVWVIAQ
Sbjct: 226 QVAIFVVLAMALRRKPDVLVNVMPKIMGNNKYLGQEKLPIIVWVIAQ 86
Score = 107 bits (228), Expect = 4e-022
Identities = 43/47 (91%), Positives = 43/47 (91%)
Frame = -1 / +1
Query: 473 PEQ*PRQ*WEAFPVPDIYCFPLSLA*HLPVHQAFFLKSWQEQQRLQP 333
PEQ*PRQ*W AFPV DIYCFPLSLA*HLP HQAFFLK WQEQQRLQP
Sbjct: 85 PEQ*PRQ*WAAFPVQDIYCFPLSLA*HLPEHQAFFLKPWQEQQRLQP 225
Score = 102 bits (218), Expect = 9e-021
Identities = 44/46 (95%), Positives = 44/46 (95%)
Frame = -3 / +3
Query: 471 *AITQTMMGSFSCPRYLLFPIIFGITFTSTSGFLLKVMARTTKIAT 334
*AITQTMMGSFSCPRYLLFPIIFGITFT TSGFLLK MARTTKIAT
Sbjct: 87 *AITQTMMGSFSCPRYLLFPIIFGITFTRTSGFLLKAMARTTKIAT 224
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,280,779,182
Number of Sequences: 832831
Number of extensions: 19312567
Number of successful extensions: 82845
Number of sequences better than 1.0e-020: 7
length of database: 163,786,556
effective HSP length: 55
effective length of database: 117,980,851
effective search space used: 37399929767
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)