TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3713074.2.1
(527 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW231166.1|CW231166 104_680_11210980_116_37342_010 Sorgh... 117 1e-025
gb|CW410447.1|CW410447 fsbb001f105d07f0 Sorghum methylation... 117 1e-025
gb|CW410448.1|CW410448 fsbb001f105d07k0 Sorghum methylation... 117 1e-025
gb|CW205365.1|CW205365 104_633_11187029_116_36925_019 Sorgh... 83 2e-025
gb|BE593115.1|BE593115 WS1_97_F09.g1_A002 Water-stressed 1 ... 113 2e-024
gb|BE593425.1|BE593425 WS1_97_F09.b1_A002 Water-stressed 1 ... 113 2e-024
gb|BG103154.1|BG103154 RHIZ2_18_G08.g1_A003 Rhizome2 (RHIZ2... 113 2e-024
gb|CF487966.1|CF487966 POL1_47_A08.b1_A002 Pollen Sorghum b... 113 2e-024
gb|CF488045.1|CF488045 POL1_47_A08.g1_A002 Pollen Sorghum b... 113 2e-024
gb|DN551899.1|DN551899 pSPR-RT-MR-H1_B06_S170 pSPR Sorghum ... 113 2e-024
gb|AW564753.1|AW564753 LG1_301_D09.b1_A002 Light Grown 1 (L... 112 3e-024
gb|AW564805.1|AW564805 LG1_301_F09.b1_A002 Light Grown 1 (L... 112 3e-024
gb|BE359363.1|BE359363 DG1_40_D01.g1_A002 Dark Grown 1 (DG1... 110 2e-023
gb|BF587838.1|BF587838 FM1_33_F06.g1_A003 Floral-Induced Me... 110 2e-023
gb|BE595663.1|BE595663 PI1_55_A07.g1_A002 Pathogen induced ... 107 1e-022
gb|BG463628.1|BG463628 EM1_50_A05.g1_A002 Embryo 1 (EM1) So... 107 1e-022
gb|CF485254.1|CF485254 POL1_30_H08.b1_A002 Pollen Sorghum b... 107 1e-022
>gb|CW231166.1|CW231166 104_680_11210980_116_37342_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11210980, DNA
sequence
Length = 712
Score = 117 bits (250), Expect = 1e-025
Identities = 46/68 (67%), Positives = 51/68 (75%)
Frame = +1 / +1
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCYIAQI 189
GTVVD+ ICHPTEFDFF+C HA KGTSRP HYHVL D+N FTADALQ+LT NLCY
Sbjct: 37 GTVVDSKICHPTEFDFFLCSHAGIKGTSRPAHYHVLWDENNFTADALQTLTNNLCYT*AS 216
Query: 190 IQGGPIRC 213
+ G C
Sbjct: 217 LPGHSYSC 240
>gb|CW410447.1|CW410447 fsbb001f105d07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f105d07, DNA
sequence
Length = 777
Score = 117 bits (250), Expect = 1e-025
Identities = 46/68 (67%), Positives = 51/68 (75%)
Frame = +1 / +3
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCYIAQI 189
GTVVD+ ICHPTEFDFF+C HA KGTSRP HYHVL D+N FTADALQ+LT NLCY
Sbjct: 570 GTVVDSKICHPTEFDFFLCSHAGIKGTSRPAHYHVLWDENNFTADALQTLTNNLCYT*AS 749
Query: 190 IQGGPIRC 213
+ G C
Sbjct: 750 LPGHSYSC 773
>gb|CW410448.1|CW410448 fsbb001f105d07k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f105d07, DNA
sequence
Length = 826
Score = 117 bits (250), Expect = 1e-025
Identities = 46/68 (67%), Positives = 51/68 (75%)
Frame = +1 / -3
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCYIAQI 189
GTVVD+ ICHPTEFDFF+C HA KGTSRP HYHVL D+N FTADALQ+LT NLCY
Sbjct: 341 GTVVDSKICHPTEFDFFLCSHAGIKGTSRPAHYHVLWDENNFTADALQTLTNNLCYT*AS 162
Query: 190 IQGGPIRC 213
+ G C
Sbjct: 161 LPGHSYSC 138
>gb|CW205365.1|CW205365 104_633_11187029_116_36925_019 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11187029, DNA
sequence
Length = 667
Score = 83.1 bits (175), Expect(2) = 2e-025
Identities = 31/35 (88%), Positives = 34/35 (97%)
Frame = +1 / -2
Query: 76 RAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCYI 180
+ +GTSRPTHYHVLRDDNKFTADALQSLTYNLCY+
Sbjct: 462 KLQGTSRPTHYHVLRDDNKFTADALQSLTYNLCYL 358
Score = 74.8 bits (157), Expect(2) = 4e-023
Identities = 31/31 (100%), Positives = 31/31 (100%)
Frame = -1 / +2
Query: 176 *HKLYVRDCRASAVNLLSSRSTW*CVGRLVP 84
*HKLYVRDCRASAVNLLSSRSTW*CVGRLVP
Sbjct: 362 *HKLYVRDCRASAVNLLSSRSTW*CVGRLVP 454
Score = 53.8 bits (111), Expect(2) = 4e-023
Identities = 20/22 (90%), Positives = 21/22 (95%)
Frame = -1 / +2
Query: 74 AWMHTKKSNSVGWQILLSTTVP 9
AW+H KKSNSVGWQILLSTTVP
Sbjct: 545 AWLHRKKSNSVGWQILLSTTVP 610
Score = 53.3 bits (110), Expect(2) = 2e-025
Identities = 19/25 (76%), Positives = 21/25 (84%)
Frame = +1 / -2
Query: 10 GTVVDNNICHPTEFDFFVCIHARAK 84
GTVVD +ICHPTEFDFF+C HA K
Sbjct: 609 GTVVDKSICHPTEFDFFLCSHAGIK 535
>gb|BE593115.1|BE593115 WS1_97_F09.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 599
Score = 113 bits (241), Expect = 2e-024
Identities = 42/56 (75%), Positives = 48/56 (85%)
Frame = +1 / +1
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQ+LT NLCY
Sbjct: 7 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQTLTNNLCY 174
>gb|BE593425.1|BE593425 WS1_97_F09.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 515
Score = 113 bits (241), Expect = 2e-024
Identities = 42/56 (75%), Positives = 48/56 (85%)
Frame = +1 / +3
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQ+LT NLCY
Sbjct: 285 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQTLTNNLCY 452
>gb|BG103154.1|BG103154 RHIZ2_18_G08.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 567
Score = 113 bits (241), Expect = 2e-024
Identities = 42/56 (75%), Positives = 48/56 (85%)
Frame = +1 / +1
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQ+LT NLCY
Sbjct: 82 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQTLTNNLCY 249
>gb|CF487966.1|CF487966 POL1_47_A08.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_47_A08_A002 3', mRNA sequence
Length = 628
Score = 113 bits (241), Expect = 2e-024
Identities = 42/56 (75%), Positives = 49/56 (87%)
Frame = +1 / +3
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD +ICHP+EFDF++C HA KGTSRPTHYHVL D+N+F+ADALQ LT NLCY
Sbjct: 57 GTVVDTSICHPSEFDFYLCSHAGIKGTSRPTHYHVLYDENRFSADALQFLTNNLCY 224
>gb|CF488045.1|CF488045 POL1_47_A08.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_47_A08_A002 5', mRNA sequence
Length = 763
Score = 113 bits (241), Expect = 2e-024
Identities = 42/56 (75%), Positives = 49/56 (87%)
Frame = +1 / +3
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD +ICHP+EFDF++C HA KGTSRPTHYHVL D+N+F+ADALQ LT NLCY
Sbjct: 468 GTVVDTSICHPSEFDFYLCSHAGIKGTSRPTHYHVLYDENRFSADALQFLTNNLCY 635
>gb|DN551899.1|DN551899 pSPR-RT-MR-H1_B06_S170 pSPR Sorghum propinquum cDNA, mRNA sequence
Length = 884
Score = 113 bits (241), Expect = 2e-024
Identities = 42/56 (75%), Positives = 48/56 (85%)
Frame = +1 / -2
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQ+LT NLCY
Sbjct: 592 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQTLTNNLCY 425
>gb|AW564753.1|AW564753 LG1_301_D09.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 432
Score = 112 bits (240), Expect = 3e-024
Identities = 42/56 (75%), Positives = 48/56 (85%)
Frame = +1 / +1
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQ+LT NLCY
Sbjct: 148 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADELQTLTNNLCY 315
>gb|AW564805.1|AW564805 LG1_301_F09.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 435
Score = 112 bits (240), Expect = 3e-024
Identities = 42/56 (75%), Positives = 48/56 (85%)
Frame = +1 / +1
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQ+LT NLCY
Sbjct: 148 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADELQTLTNNLCY 315
>gb|BE359363.1|BE359363 DG1_40_D01.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 678
Score = 110 bits (235), Expect = 2e-023
Identities = 41/56 (73%), Positives = 47/56 (83%)
Frame = +1 / +1
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA KGTSRP HYHVL D+N F+AD LQ+LT NLCY
Sbjct: 49 GTVVDSKICHPTEFDFYLCSHAGIKGTSRPAHYHVLWDENNFSADELQTLTNNLCY 216
>gb|BF587838.1|BF587838 FM1_33_F06.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 437
Score = 110 bits (235), Expect = 2e-023
Identities = 41/56 (73%), Positives = 47/56 (83%)
Frame = +1 / +3
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA KGTSRP HYHVL D+N F+AD LQ+LT NLCY
Sbjct: 42 GTVVDSKICHPTEFDFYLCSHAGIKGTSRPAHYHVLWDENNFSADELQTLTNNLCY 209
>gb|BE595663.1|BE595663 PI1_55_A07.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 403
Score = 107 bits (229), Expect = 1e-022
Identities = 41/56 (73%), Positives = 47/56 (83%)
Frame = +1 / +3
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ I HPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQ+LT NLCY
Sbjct: 3 GTVVDSKIGHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQTLTNNLCY 170
>gb|BG463628.1|BG463628 EM1_50_A05.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 611
Score = 107 bits (229), Expect = 1e-022
Identities = 40/54 (74%), Positives = 46/54 (85%)
Frame = +1 / +1
Query: 16 VVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
VVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQ+LT NLCY
Sbjct: 1 VVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADELQTLTNNLCY 162
>gb|CF485254.1|CF485254 POL1_30_H08.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_30_H08_A002 3', mRNA sequence
Length = 573
Score = 107 bits (229), Expect = 1e-022
Identities = 41/47 (87%), Positives = 43/47 (91%)
Frame = +1 / +1
Query: 40 PTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCYI 180
PTEFDFF+C HA KGTSRPTHYHVLRDDNKFTA ALQSLTYNLCY+
Sbjct: 1 PTEFDFFLCSHAGIKGTSRPTHYHVLRDDNKFTAGALQSLTYNLCYL 141
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 738,096,449
Number of Sequences: 832831
Number of extensions: 11109684
Number of successful extensions: 108735
Number of sequences better than 1.0e-020: 18
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 14596874586
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)