TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3712967.2.1
(571 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW340402.1|CW340402 104_841_11485781_116_36146_023 Sorgh... 243 2e-068
gb|CW076050.1|CW076050 104_364_10810303_114_31802_367 Sorgh... 216 4e-067
gb|CW089034.1|CW089034 104_434_10948469_114_32601_027 Sorgh... 242 4e-063
gb|CW089035.1|CW089035 104_434_10948469_116_32600_027 Sorgh... 189 2e-053
gb|CW340403.1|CW340403 104_841_11485781_148_36147_023 Sorgh... 186 2e-046
gb|CW155885.1|CW155885 104_558_11146378_148_36365_037 Sorgh... 109 3e-023
gb|CF486010.1|CF486010 POL1_35_D06.b1_A002 Pollen Sorghum b... 109 3e-023
gb|CW355046.1|CW355046 fsbb001f019i07k0 Sorghum methylation... 91 1e-021
gb|CW355045.1|CW355045 fsbb001f019i07f0 Sorghum methylation... 91 1e-021
gb|CW221063.1|CW221063 104_656_11197697_148_37167_079 Sorgh... 91 1e-021
gb|BE361683.1|BE361683 DG1_81_F09.g1_A002 Dark Grown 1 (DG1... 91 1e-021
gb|CX606104.1|CX606104 ANR1_1_D12.b1_A002 Anaerobic roots S... 94 4e-021
gb|CW172299.1|CW172299 104_583_11156215_148_36534_024 Sorgh... 94 4e-021
gb|CW276959.1|CW276959 104_750_11405768_116_35395_018 Sorgh... 85 5e-021
gb|CX608981.1|CX608981 ANR1_10_A01.b1_A002 Anaerobic roots ... 85 5e-021
>gb|CW340402.1|CW340402 104_841_11485781_116_36146_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11485781, DNA
sequence
Length = 672
Score = 243 bits (526), Expect = 1e-063
Identities = 103/128 (80%), Positives = 106/128 (82%)
Frame = -2 / +1
Query: 387 DYSSSPDKFKLTGVPVSGIQSAPCKKCPTVNCSALSLPITWNPCISFRPVTLAPSPPFLN 208
+YSSSPDK KLTGVPVSGIQSAPC+K PTVN SALSLPITWNP ISFRPV LAPSPPFLN
Sbjct: 4 NYSSSPDKPKLTGVPVSGIQSAPCRKWPTVNRSALSLPITWNPFISFRPVALAPSPPFLN 183
Query: 207 SPKKAVPRLSLPSQGMYPWRCTNPSMTDSITTVLANSFHGRPRYVLTGADPDXXXXXXLA 28
SPKKAVPR SLPS GMYPW CTNP M DSITTVLA SFHGRPRYV+T AD A
Sbjct: 184 SPKKAVPRSSLPSHGMYPWPCTNPPMMDSITTVLAYSFHGRPRYVVTSADDPDLFLLLPA 363
Query: 27 SCSSATIW 4
S SSATIW
Sbjct: 364 SSSSATIW 387
Score = 242 bits (522), Expect(2) = 2e-068
Identities = 95/117 (81%), Positives = 102/117 (87%)
Frame = +2 / -2
Query: 5 QIVADEQLAXXXXXXXXXXAPVNTYLGRPWKEFARTVVMESVIDGFVHRQGYMPWEGKDN 184
QIVADE+LA A V TYLGRPWKE+ARTVVMES+I GFVH QGYMPWEGKD+
Sbjct: 386 QIVADEELAGSNKNKSGSSALVTTYLGRPWKEYARTVVMESIIGGFVHGQGYMPWEGKDD 207
Query: 185 LGTAFFGEFRNGGDGANVTGRKEMQGFHVMGKDRALQFTVGHFLHGADWIPETGTPV 355
LGTAFFGEFRNGGDGAN TGRKEM+GFHVMGKD+AL+FTVGHFLHGADWIPETGTPV
Sbjct: 206 LGTAFFGEFRNGGDGANATGRKEMKGFHVMGKDKALRFTVGHFLHGADWIPETGTPV 36
Score = 199 bits (428), Expect(2) = 3e-056
Identities = 84/98 (85%), Positives = 87/98 (88%)
Frame = -1 / +3
Query: 355 HRRASLRYPVRAVQEVPHRELQRPVLAHHVEPLHLLPPGDVGAVAAVPELSEEGRAQVVL 176
HRRA LRYPV AVQEV HRE QR VLAHHVEPLHLLPPG VGAVAAVPEL+EEGRAQVVL
Sbjct: 36 HRRAGLRYPVGAVQEVAHREPQRLVLAHHVEPLHLLPPGGVGAVAAVPELAEEGRAQVVL 215
Query: 175 ALPGHVPLAVHESVNDGLHHHRPRELLPRPAQVRIDRR 62
ALP HVPLAVHE +DGLHHHRPR LLPRPAQVR D+R
Sbjct: 216 ALPRHVPLAVHEPADDGLHHHRPRVLLPRPAQVRRDQR 329
Score = 133 bits (285), Expect = 2e-030
Identities = 54/64 (84%), Positives = 54/64 (84%)
Frame = +3 / -3
Query: 126 PSLTDSCTARGTCPGRARTTWARPSSESSGTAATAPTSPGGRRCRGST*WARTGRCSSRW 305
PS SCTARGTC GRARTTWARPSS SSGTAATAPT PGGRR RGST*WART RC SRW
Sbjct: 265 PSSAGSCTARGTCRGRARTTWARPSSASSGTAATAPTPPGGRR*RGST*WARTRRCGSRW 86
Query: 306 GTSC 317
TSC
Sbjct: 85 ATSC 74
Score = 40.9 bits (83), Expect(2) = 3e-056
Identities = 16/18 (88%), Positives = 18/18 (100%)
Frame = -3 / +2
Query: 386 ITLPRQTSLSSPACQSPV 333
ITLPR+TSLSSPAC+SPV
Sbjct: 5 ITLPRRTSLSSPACRSPV 58
Score = 38.6 bits (78), Expect(2) = 2e-068
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +1 / -1
Query: 331 DTGDWHAGELKLVWRGRVI 387
DTGD HAGEL+LV RGRVI
Sbjct: 60 DTGDRHAGELRLVRRGRVI 4
>gb|CW076050.1|CW076050 104_364_10810303_114_31802_367 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10810303, DNA
sequence
Length = 526
Score = 216 bits (466), Expect(2) = 2e-061
Identities = 89/101 (88%), Positives = 91/101 (90%)
Frame = -2 / +1
Query: 387 DYSSSPDKFKLTGVPVSGIQSAPCKKCPTVNCSALSLPITWNPCISFRPVTLAPSPPFLN 208
+YSSSPDK KLTGVPVSGIQSAPC+K PTVN SALSLPITWNP ISFRPV LAPSPPFLN
Sbjct: 223 NYSSSPDKPKLTGVPVSGIQSAPCRKWPTVNRSALSLPITWNPFISFRPVVLAPSPPFLN 402
Query: 207 SPKKAVPRLSLPSQGMYPWRCTNPSMTDSITTVLANSFHGR 85
SPKKAVPR SLPS GMYPW CTNP M DSITTVLANSFHGR
Sbjct: 403 SPKKAVPRSSLPSHGMYPWPCTNPPMMDSITTVLANSFHGR 525
Score = 214 bits (462), Expect(3) = 4e-067
Identities = 81/90 (90%), Positives = 87/90 (96%)
Frame = +2 / -3
Query: 86 RPWKEFARTVVMESVIDGFVHRQGYMPWEGKDNLGTAFFGEFRNGGDGANVTGRKEMQGF 265
RPWKEFARTVVMES+I GFVH QGY+PWEGKD+LGTAFFGEFRNGGDGAN TGRKEM+GF
Sbjct: 524 RPWKEFARTVVMESIIGGFVHGQGYIPWEGKDDLGTAFFGEFRNGGDGANTTGRKEMKGF 345
Query: 266 HVMGKDRALQFTVGHFLHGADWIPETGTPV 355
HVMGKD+AL+FTVGHFLHGADWIPETGTPV
Sbjct: 344 HVMGKDKALRFTVGHFLHGADWIPETGTPV 255
Score = 184 bits (397), Expect(2) = 5e-052
Identities = 77/90 (85%), Positives = 80/90 (88%)
Frame = -1 / +3
Query: 355 HRRASLRYPVRAVQEVPHRELQRPVLAHHVEPLHLLPPGDVGAVAAVPELSEEGRAQVVL 176
HRRA LRYPV AVQEV HRE QR VLAHHVEPLHLLPPG VGAV AVPEL+EEGRAQVVL
Sbjct: 255 HRRAGLRYPVGAVQEVAHREPQRLVLAHHVEPLHLLPPGGVGAVTAVPELAEEGRAQVVL 434
Query: 175 ALPGHVPLAVHESVNDGLHHHRPRELLPRP 86
ALP +VPLAVHE +DGLHHHRPRELLPRP
Sbjct: 435 ALPRNVPLAVHEPADDGLHHHRPRELLPRP 524
Score = 126 bits (270), Expect = 2e-028
Identities = 52/64 (81%), Positives = 52/64 (81%)
Frame = +3 / -1
Query: 126 PSLTDSCTARGTCPGRARTTWARPSSESSGTAATAPTSPGGRRCRGST*WARTGRCSSRW 305
PS SCTARGT GRARTTWARPSS SSGTA TAPT PGGRR RGST*WART RC SRW
Sbjct: 484 PSSAGSCTARGTFRGRARTTWARPSSASSGTAVTAPTPPGGRR*RGST*WARTRRCGSRW 305
Query: 306 GTSC 317
TSC
Sbjct: 304 ATSC 293
Score = 41.8 bits (85), Expect(3) = 4e-067
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = +2 / -3
Query: 404 VCVHVCDYNVYMYVQLIKTYV 466
VCV VC+YN+YMYVQLIK V
Sbjct: 116 VCVCVCEYNLYMYVQLIKYVV 54
Score = 40.9 bits (83), Expect(2) = 5e-052
Identities = 16/18 (88%), Positives = 18/18 (100%)
Frame = -3 / +2
Query: 386 ITLPRQTSLSSPACQSPV 333
ITLPR+TSLSSPAC+SPV
Sbjct: 224 ITLPRRTSLSSPACRSPV 277
Score = 40.5 bits (82), Expect(2) = 2e-061
Identities = 17/22 (77%), Positives = 17/22 (77%)
Frame = -2 / +1
Query: 468 RTYVLISCTYIYTL*SHTCTHT 403
RT LISCTYIY L SHT THT
Sbjct: 52 RTTYLISCTYIYRLYSHTHTHT 117
Score = 38.6 bits (78), Expect(3) = 4e-067
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +1 / -2
Query: 331 DTGDWHAGELKLVWRGRVI 387
DTGD HAGEL+LV RGRVI
Sbjct: 279 DTGDRHAGELRLVRRGRVI 223
>gb|CW089034.1|CW089034 104_434_10948469_114_32601_027 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10948469, DNA
sequence
Length = 620
Score = 242 bits (522), Expect = 4e-063
Identities = 95/117 (81%), Positives = 102/117 (87%)
Frame = +2 / +2
Query: 5 QIVADEQLAXXXXXXXXXXAPVNTYLGRPWKEFARTVVMESVIDGFVHRQGYMPWEGKDN 184
QIVADE+LA A V TYLGRPWKE+ARTVVMES+I GFVH QGYMPWEGKD+
Sbjct: 266 QIVADEELAGSNKNKSGSSALVTTYLGRPWKEYARTVVMESIIGGFVHGQGYMPWEGKDD 445
Query: 185 LGTAFFGEFRNGGDGANVTGRKEMQGFHVMGKDRALQFTVGHFLHGADWIPETGTPV 355
LGTAFFGEFRNGGDGAN TGRKEM+GFHVMGKD+AL+FTVGHFLHGADWIPETGTPV
Sbjct: 446 LGTAFFGEFRNGGDGANATGRKEMKGFHVMGKDKALRFTVGHFLHGADWIPETGTPV 616
Score = 226 bits (487), Expect = 3e-058
Identities = 95/118 (80%), Positives = 97/118 (82%)
Frame = -2 / -3
Query: 357 LTGVPVSGIQSAPCKKCPTVNCSALSLPITWNPCISFRPVTLAPSPPFLNSPKKAVPRLS 178
LTGVPVSGIQSAPC+K PTVN SALSLPITWNP ISFRPV LAPSPPFLNSPKKAVPR S
Sbjct: 618 LTGVPVSGIQSAPCRKWPTVNRSALSLPITWNPFISFRPVALAPSPPFLNSPKKAVPRSS 439
Query: 177 LPSQGMYPWRCTNPSMTDSITTVLANSFHGRPRYVLTGADPDXXXXXXLASCSSATIW 4
LPS GMYPW CTNP M DSITTVLA SFHGRPRYV+T AD AS SSATIW
Sbjct: 438 LPSHGMYPWPCTNPPMMDSITTVLAYSFHGRPRYVVTSADDPDLFLLLPASSSSATIW 265
Score = 199 bits (428), Expect = 4e-050
Identities = 84/98 (85%), Positives = 87/98 (88%)
Frame = -1 / -2
Query: 355 HRRASLRYPVRAVQEVPHRELQRPVLAHHVEPLHLLPPGDVGAVAAVPELSEEGRAQVVL 176
HRRA LRYPV AVQEV HRE QR VLAHHVEPLHLLPPG VGAVAAVPEL+EEGRAQVVL
Sbjct: 616 HRRAGLRYPVGAVQEVAHREPQRLVLAHHVEPLHLLPPGGVGAVAAVPELAEEGRAQVVL 437
Query: 175 ALPGHVPLAVHESVNDGLHHHRPRELLPRPAQVRIDRR 62
ALP HVPLAVHE +DGLHHHRPR LLPRPAQVR D+R
Sbjct: 436 ALPRHVPLAVHEPADDGLHHHRPRVLLPRPAQVRRDQR 323
Score = 133 bits (285), Expect(2) = 3e-031
Identities = 54/64 (84%), Positives = 54/64 (84%)
Frame = +3 / +3
Query: 126 PSLTDSCTARGTCPGRARTTWARPSSESSGTAATAPTSPGGRRCRGST*WARTGRCSSRW 305
PS SCTARGTC GRARTTWARPSS SSGTAATAPT PGGRR RGST*WART RC SRW
Sbjct: 387 PSSAGSCTARGTCRGRARTTWARPSSASSGTAATAPTPPGGRR*RGST*WARTRRCGSRW 566
Query: 306 GTSC 317
TSC
Sbjct: 567 ATSC 578
Score = 22.6 bits (43), Expect(2) = 3e-031
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +1 / +1
Query: 331 DTGDWHAGE 357
DTGD HAGE
Sbjct: 592 DTGDRHAGE 618
>gb|CW089035.1|CW089035 104_434_10948469_116_32600_027 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10948469, DNA
sequence
Length = 652
Score = 189 bits (408), Expect(2) = 2e-053
Identities = 80/95 (84%), Positives = 81/95 (85%)
Frame = -2 / +3
Query: 387 DYSSSPDKFKLTGVPVSGIQSAPCKKCPTVNCSALSLPITWNPCISFRPVTLAPSPPFLN 208
+YSSSPDK KLTGVPVSGIQSAPC K PTVN SALSLPITWNP ISFRPV LAPSPPFL
Sbjct: 363 NYSSSPDKPKLTGVPVSGIQSAPCTKWPTVNRSALSLPITWNPFISFRPVALAPSPPFLK 542
Query: 207 SPKKAVPRLSLPSQGMYPWRCTNPSMTDSITTVLA 103
SPKKAVPR SLPS MYPW CTN M DSITTVLA
Sbjct: 543 SPKKAVPRSSLPSHSMYPWPCTNTPMMDSITTVLA 647
Score = 183 bits (395), Expect(2) = 1e-051
Identities = 72/86 (83%), Positives = 80/86 (93%)
Frame = +2 / -1
Query: 98 EFARTVVMESVIDGFVHRQGYMPWEGKDNLGTAFFGEFRNGGDGANVTGRKEMQGFHVMG 277
E+ARTVVMES+I FVH QGYM EGKD+LGTAFFG+FRNGGDGAN TGRKEM+GFHVMG
Sbjct: 652 EYARTVVMESIIGVFVHGQGYML*EGKDDLGTAFFGDFRNGGDGANATGRKEMKGFHVMG 473
Query: 278 KDRALQFTVGHFLHGADWIPETGTPV 355
KD+AL+FTVGHF+HGADWIPETGTPV
Sbjct: 472 KDKALRFTVGHFVHGADWIPETGTPV 395
Score = 166 bits (357), Expect(2) = 4e-046
Identities = 70/86 (81%), Positives = 73/86 (84%)
Frame = -1 / +2
Query: 355 HRRASLRYPVRAVQEVPHRELQRPVLAHHVEPLHLLPPGDVGAVAAVPELSEEGRAQVVL 176
HRRA LRYPV AV EV HRE QR VLAHHVEPLHLLPPG VGAV+AVPE+SEE RAQVVL
Sbjct: 395 HRRAGLRYPVGAVHEVAHREPQRLVLAHHVEPLHLLPPGGVGAVSAVPEISEESRAQVVL 574
Query: 175 ALPGHVPLAVHESVNDGLHHHRPREL 98
AL HVPLAVHE +DGLHHHRPR L
Sbjct: 575 ALSQHVPLAVHEHADDGLHHHRPRVL 652
Score = 121 bits (259), Expect(2) = 6e-032
Identities = 51/64 (79%), Positives = 51/64 (79%)
Frame = +3 / -2
Query: 126 PSLTDSCTARGTCPGRARTTWARPSSESSGTAATAPTSPGGRRCRGST*WARTGRCSSRW 305
PS SCTARGTC RARTTWAR SSE SGTA TAPT PGGRR RGST*WART RC SRW
Sbjct: 624 PSSACSCTARGTCCERARTTWARLSSEISGTAETAPTPPGGRR*RGST*WARTRRCGSRW 445
Query: 306 GTSC 317
TSC
Sbjct: 444 ATSC 433
Score = 41.8 bits (85), Expect(2) = 1e-051
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = +2 / -2
Query: 404 VCVHVCDYNVYMYVQLIKTYV 466
VCV VC+YN+YMYVQLIK V
Sbjct: 258 VCVCVCEYNLYMYVQLIKYVV 196
Score = 40.5 bits (82), Expect(2) = 2e-053
Identities = 17/22 (77%), Positives = 17/22 (77%)
Frame = -2 / +2
Query: 468 RTYVLISCTYIYTL*SHTCTHT 403
RT LISCTYIY L SHT THT
Sbjct: 194 RTTYLISCTYIYRLYSHTHTHT 259
Score = 39.6 bits (80), Expect(2) = 4e-046
Identities = 15/18 (83%), Positives = 18/18 (100%)
Frame = -3 / +1
Query: 386 ITLPRQTSLSSPACQSPV 333
ITLPR+TSL+SPAC+SPV
Sbjct: 364 ITLPRRTSLNSPACRSPV 417
Score = 36.8 bits (74), Expect(2) = 6e-032
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = +1 / -3
Query: 331 DTGDWHAGELKLVWRGRVI 387
DTGD HAGE +LV RGRVI
Sbjct: 419 DTGDRHAGEFRLVRRGRVI 363
>gb|CW340403.1|CW340403 104_841_11485781_148_36147_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11485781, DNA
sequence
Length = 675
Score = 186 bits (401), Expect = 2e-046
Identities = 75/99 (75%), Positives = 82/99 (82%)
Frame = +2 / +1
Query: 5 QIVADEQLAXXXXXXXXXXAPVNTYLGRPWKEFARTVVMESVIDGFVHRQGYMPWEGKDN 184
QIVADE+LA A V TYLGRPWKE+ARTVVMES+I GFVH QGYMPWEGKD+
Sbjct: 379 QIVADEELAGSNKNKSGSSALVTTYLGRPWKEYARTVVMESIIGGFVHGQGYMPWEGKDD 558
Query: 185 LGTAFFGEFRNGGDGANVTGRKEMQGFHVMGKDRALQFT 301
L TAFFGEFRNGGDGAN TGRKEM+GFHVMGK +AL+FT
Sbjct: 559 LXTAFFGEFRNGGDGANATGRKEMKGFHVMGKGQALRFT 675
Score = 176 bits (378), Expect = 3e-043
Identities = 75/99 (75%), Positives = 76/99 (76%)
Frame = -2 / -2
Query: 300 VNCSALSLPITWNPCISFRPVTLAPSPPFLNSPKKAVPRLSLPSQGMYPWRCTNPSMTDS 121
VN SA LPITWNP ISFRPV LAPSPPFLNSPKKAV R SLPS GMYPW CTNP M DS
Sbjct: 674 VNRSACPLPITWNPFISFRPVALAPSPPFLNSPKKAVXRSSLPSHGMYPWPCTNPPMMDS 495
Query: 120 ITTVLANSFHGRPRYVLTGADPDXXXXXXLASCSSATIW 4
ITTVLA SFHGRPRYV+T AD AS SSATIW
Sbjct: 494 ITTVLAYSFHGRPRYVVTSADDPDLFLLLPASSSSATIW 378
Score = 159 bits (342), Expect = 3e-038
Identities = 67/80 (83%), Positives = 70/80 (87%)
Frame = -1 / -1
Query: 301 RELQRPVLAHHVEPLHLLPPGDVGAVAAVPELSEEGRAQVVLALPGHVPLAVHESVNDGL 122
RE QR LAHHVEPLHL PPG VGAVAAVPEL+EEGRAQVVLALP HVPLAVHE +DGL
Sbjct: 675 REPQRLSLAHHVEPLHLFPPGGVGAVAAVPELAEEGRAQVVLALPRHVPLAVHEPADDGL 496
Query: 121 HHHRPRELLPRPAQVRIDRR 62
HHHRPR LLPRPAQVR D+R
Sbjct: 495 HHHRPRVLLPRPAQVRRDQR 436
Score = 107 bits (229), Expect = 1e-022
Identities = 46/58 (79%), Positives = 47/58 (81%)
Frame = +3 / +2
Query: 126 PSLTDSCTARGTCPGRARTTWARPSSESSGTAATAPTSPGGRRCRGST*WARTGRCSS 299
PS SCTARGTC GRARTT ARPSS SSGTAATAPT PGG+R RGST*WAR RC S
Sbjct: 500 PSSAGSCTARGTCRGRARTTXARPSSASSGTAATAPTPPGGKR*RGST*WARDRRCGS 673
>gb|CW155885.1|CW155885 104_558_11146378_148_36365_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11146378, DNA
sequence
Length = 728
Score = 109 bits (233), Expect = 3e-023
Identities = 43/95 (45%), Positives = 57/95 (60%)
Frame = +2 / -1
Query: 68 VNTYLGRPWKEFARTVVMESVIDGFVHRQGYMPWEGKDNLGTAFFGEFRNGGDGANVTGR 247
V +YLGRPWKE+ARTVVMES I + +G+ W G L T ++ E+ N G GA + R
Sbjct: 422 VPSYLGRPWKEYARTVVMESTIGDLIRPEGWAEWMGDLGLKTLYYAEYANTGPGAGTSKR 243
Query: 248 KEMQGFHVMGKDRALQFTVGHFLHGADWIPETGTP 352
G+ V+G+ A FT G F+ G W+ TGTP
Sbjct: 242 VNWPGYRVIGQAEATHFTAGVFIDGMTWLQSTGTP 138
>gb|CF486010.1|CF486010 POL1_35_D06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_35_D06_A002 3', mRNA sequence
Length = 713
Score = 109 bits (233), Expect = 3e-023
Identities = 43/95 (45%), Positives = 57/95 (60%)
Frame = +2 / +2
Query: 68 VNTYLGRPWKEFARTVVMESVIDGFVHRQGYMPWEGKDNLGTAFFGEFRNGGDGANVTGR 247
V +YLGRPWKE+ARTVVMES I + +G+ W G L T ++ E+ N G GA + R
Sbjct: 146 VPSYLGRPWKEYARTVVMESTIGDLIRPEGWAEWMGDLGLKTLYYAEYANTGPGAGTSKR 325
Query: 248 KEMQGFHVMGKDRALQFTVGHFLHGADWIPETGTP 352
G+ V+G+ A FT G F+ G W+ TGTP
Sbjct: 326 VNWPGYRVIGQAEATHFTAGVFIDGMTWLQSTGTP 430
>gb|CW355046.1|CW355046 fsbb001f019i07k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f019i07, DNA
sequence
Length = 732
Score = 91.3 bits (193), Expect(2) = 1e-021
Identities = 34/69 (49%), Positives = 46/69 (66%)
Frame = +2 / -3
Query: 68 VNTYLGRPWKEFARTVVMESVIDGFVHRQGYMPWEGKDNLGTAFFGEFRNGGDGANVTGR 247
V TYLGRPWK ++RTV+M+S +D V G+MPW+G L T F+ E+ N G GA+ + R
Sbjct: 694 VATYLGRPWKLYSRTVIMQSEVDALVDPAGWMPWDGDYALSTLFYAEYNNSGPGADTSRR 515
Query: 248 KEMQGFHVM 274
GFHV+
Sbjct: 514 VAWPGFHVL 488
Score = 32.7 bits (65), Expect(2) = 1e-021
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2 / -3
Query: 275 GKDRALQFTVGHFLHGADWIPETGTP 352
G A FTVG+ + G W+P+TG P
Sbjct: 484 GTADAANFTVGNMVLGDFWLPQTGVP 407
>gb|CW355045.1|CW355045 fsbb001f019i07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f019i07, DNA
sequence
Length = 717
Score = 91.3 bits (193), Expect(2) = 1e-021
Identities = 34/69 (49%), Positives = 46/69 (66%)
Frame = +2 / +3
Query: 68 VNTYLGRPWKEFARTVVMESVIDGFVHRQGYMPWEGKDNLGTAFFGEFRNGGDGANVTGR 247
V TYLGRPWK ++RTV+M+S +D V G+MPW+G L T F+ E+ N G GA+ + R
Sbjct: 351 VATYLGRPWKLYSRTVIMQSEVDALVDPAGWMPWDGDYALSTLFYAEYNNSGPGADTSRR 530
Query: 248 KEMQGFHVM 274
GFHV+
Sbjct: 531 VAWPGFHVL 557
Score = 32.7 bits (65), Expect(2) = 1e-021
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2 / +3
Query: 275 GKDRALQFTVGHFLHGADWIPETGTP 352
G A FTVG+ + G W+P+TG P
Sbjct: 561 GTADAANFTVGNMVLGDFWLPQTGVP 638
>gb|CW221063.1|CW221063 104_656_11197697_148_37167_079 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11197697, DNA
sequence
Length = 667
Score = 91.3 bits (193), Expect(2) = 1e-021
Identities = 34/69 (49%), Positives = 46/69 (66%)
Frame = +2 / -2
Query: 68 VNTYLGRPWKEFARTVVMESVIDGFVHRQGYMPWEGKDNLGTAFFGEFRNGGDGANVTGR 247
V TYLGRPWK ++RTV+M+S +D V G+MPW+G L T F+ E+ N G GA+ + R
Sbjct: 480 VATYLGRPWKLYSRTVIMQSEVDALVDPAGWMPWDGDYALSTLFYAEYNNSGPGADTSRR 301
Query: 248 KEMQGFHVM 274
GFHV+
Sbjct: 300 VAWPGFHVL 274
Score = 32.7 bits (65), Expect(2) = 1e-021
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2 / -2
Query: 275 GKDRALQFTVGHFLHGADWIPETGTP 352
G A FTVG+ + G W+P+TG P
Sbjct: 270 GTADAANFTVGNMVLGDFWLPQTGVP 193
>gb|BE361683.1|BE361683 DG1_81_F09.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 592
Score = 91.3 bits (193), Expect(2) = 1e-021
Identities = 34/69 (49%), Positives = 46/69 (66%)
Frame = +2 / +3
Query: 68 VNTYLGRPWKEFARTVVMESVIDGFVHRQGYMPWEGKDNLGTAFFGEFRNGGDGANVTGR 247
V TYLGRPWK ++RTV+M+S +D V G+MPW+G L T F+ E+ N G GA+ + R
Sbjct: 51 VATYLGRPWKLYSRTVIMQSEVDALVDPAGWMPWDGDYALSTLFYAEYNNSGPGADTSRR 230
Query: 248 KEMQGFHVM 274
GFHV+
Sbjct: 231 VAWPGFHVL 257
Score = 32.7 bits (65), Expect(2) = 1e-021
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2 / +3
Query: 275 GKDRALQFTVGHFLHGADWIPETGTP 352
G A FTVG+ + G W+P+TG P
Sbjct: 261 GTADAANFTVGNMVLGDFWLPQTGVP 338
>gb|CX606104.1|CX606104 ANR1_1_D12.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_1_D12_A002 3', mRNA sequence
Length = 615
Score = 93.6 bits (198), Expect(2) = 4e-021
Identities = 35/68 (51%), Positives = 45/68 (66%)
Frame = +2 / +1
Query: 74 TYLGRPWKEFARTVVMESVIDGFVHRQGYMPWEGKDNLGTAFFGEFRNGGDGANVTGRKE 253
+YLGRPWK F+RTVVMES + G V G+MPW G L T ++ E+ N G GA+ + R
Sbjct: 40 SYLGRPWKNFSRTVVMESYVGGLVDPSGWMPWSGDFALDTLYYAEYNNSGPGADTSRRVA 219
Query: 254 MQGFHVMG 277
GFHV+G
Sbjct: 220 WPGFHVLG 243
Score = 28.6 bits (56), Expect(2) = 4e-021
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2 / +1
Query: 296 FTVGHFLHGADWIPETGTP 352
FTV + G +W+P+TG P
Sbjct: 265 FTVTSMVLGENWLPQTGVP 321
>gb|CW172299.1|CW172299 104_583_11156215_148_36534_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11156215, DNA
sequence
Length = 531
Score = 93.6 bits (198), Expect(2) = 4e-021
Identities = 35/68 (51%), Positives = 45/68 (66%)
Frame = +2 / -2
Query: 74 TYLGRPWKEFARTVVMESVIDGFVHRQGYMPWEGKDNLGTAFFGEFRNGGDGANVTGRKE 253
+YLGRPWK F+RTVVMES + G V G+MPW G L T ++ E+ N G GA+ + R
Sbjct: 455 SYLGRPWKNFSRTVVMESYVGGLVDPSGWMPWSGDFALDTLYYAEYNNSGPGADTSRRVA 276
Query: 254 MQGFHVMG 277
GFHV+G
Sbjct: 275 WPGFHVLG 252
Score = 28.6 bits (56), Expect(2) = 4e-021
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2 / -2
Query: 296 FTVGHFLHGADWIPETGTP 352
FTV + G +W+P+TG P
Sbjct: 230 FTVTSMVLGENWLPQTGVP 174
>gb|CW276959.1|CW276959 104_750_11405768_116_35395_018 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11405768, DNA
sequence
Length = 617
Score = 85.4 bits (180), Expect(2) = 5e-021
Identities = 32/67 (47%), Positives = 45/67 (67%)
Frame = +2 / -2
Query: 74 TYLGRPWKEFARTVVMESVIDGFVHRQGYMPWEGKDNLGTAFFGEFRNGGDGANVTGRKE 253
T+LGRPWK ++RTVVM S +D V +G++ W+G L T F+GE++N G GA GR
Sbjct: 391 TFLGRPWKAYSRTVVMLSYLDAHVDARGWLEWDGDFALKTLFYGEYQNEGPGAATAGRVN 212
Query: 254 MQGFHVM 274
G+HV+
Sbjct: 211 WPGYHVI 191
Score = 36.3 bits (73), Expect(2) = 5e-021
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2 / -2
Query: 287 ALQFTVGHFLHGADWIPETGTP 352
A+QFTVG F+ G +W+ TG P
Sbjct: 175 AVQFTVGQFIQGGNWLNGTGVP 110
>gb|CX608981.1|CX608981 ANR1_10_A01.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_10_A01_A002 3', mRNA sequence
Length = 599
Score = 85.4 bits (180), Expect(2) = 5e-021
Identities = 32/67 (47%), Positives = 45/67 (67%)
Frame = +2 / +1
Query: 74 TYLGRPWKEFARTVVMESVIDGFVHRQGYMPWEGKDNLGTAFFGEFRNGGDGANVTGRKE 253
T+LGRPWK ++RTVVM S +D V +G++ W+G L T F+GE++N G GA GR
Sbjct: 178 TFLGRPWKAYSRTVVMLSYLDAHVDARGWLEWDGDFALKTLFYGEYQNEGPGAATAGRVN 357
Query: 254 MQGFHVM 274
G+HV+
Sbjct: 358 WPGYHVI 378
Score = 36.3 bits (73), Expect(2) = 5e-021
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2 / +1
Query: 287 ALQFTVGHFLHGADWIPETGTP 352
A+QFTVG F+ G +W+ TG P
Sbjct: 394 AVQFTVGQFIQGGNWLNGTGVP 459
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 551,943,894
Number of Sequences: 832831
Number of extensions: 8124054
Number of successful extensions: 179398
Number of sequences better than 1.0e-020: 16
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 16271925768
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)