TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3670867.2.1
(790 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW226720.1|CW226720 104_664_11205036_116_37218_034 Sorgh... 115 7e-068
gb|CW288796.1|CW288796 104_767_11412140_148_35540_074 Sorgh... 115 1e-054
gb|CL151656.1|CL151656 104_334_10779411_114_31361_195 Sorgh... 105 9e-051
gb|CD231386.1|CD231386 SS1_16_C08.b1_A012 Salt-stressed see... 115 3e-041
gb|CD226061.1|CD226061 CCC1_43_A06.b1_A007 Callus culture/c... 140 2e-032
gb|CW322387.1|CW322387 104_816_11476070_148_35955_061 Sorgh... 105 5e-032
gb|CW403977.1|CW403977 fsbb001f095o23k0 Sorghum methylation... 105 6e-031
gb|CW226721.1|CW226721 104_664_11205036_148_37217_034 Sorgh... 73 1e-025
gb|CN143415.1|CN143415 WOUND1_16_D04.b1_A002 Wounded leaves... 117 2e-025
gb|CF433922.1|CF433922 NIT1_31_F11.b1_A002 Nitrogen-deficie... 111 1e-023
gb|CF489902.1|CF489902 POL1_61_G04.b1_A002 Pollen Sorghum b... 110 3e-023
gb|CD236446.1|CD236446 SS1_34_F06.b1_A012 Salt-stressed see... 69 3e-023
gb|CW355734.1|CW355734 fsbb001f020i03k0 Sorghum methylation... 82 3e-023
gb|CX606827.1|CX606827 ANR1_5_E02.b1_A002 Anaerobic roots S... 78 9e-023
gb|CX617984.1|CX617984 GABR1_37_B11.b1_A002 GA- or brassino... 78 9e-023
gb|CW436518.1|CW436518 fsbb001f153c19k0 Sorghum methylation... 94 2e-022
gb|CF484703.1|CF484703 POL1_27_A10.b1_A002 Pollen Sorghum b... 106 4e-022
gb|CW233992.1|CW233992 104_687_11213743_148_37382_024 Sorgh... 62 1e-021
gb|CW239805.1|CW239805 104_698_11217856_148_37523_060 Sorgh... 98 4e-021
gb|CN126603.1|CN126603 RHOH1_18_D06.b1_A002 Acid- and alkal... 102 8e-021
>gb|CW226720.1|CW226720 104_664_11205036_116_37218_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11205036, DNA
sequence
Length = 652
Score = 115 bits (246), Expect(5) = 1e-059
Identities = 49/53 (92%), Positives = 50/53 (94%)
Frame = +2 / -2
Query: 344 SKLPTCSSSRRTAAANTVVITVQSGLNMAE*SGPLTEMHHDCR*NVTPDPNTP 502
+ LPTCSSSRRTAAA TVVITVQSGLNMAE*SGPLTEM HDCR*NVTPDPNTP
Sbjct: 405 TNLPTCSSSRRTAAAKTVVITVQSGLNMAE*SGPLTEMLHDCR*NVTPDPNTP 247
Score = 115 bits (246), Expect(5) = 7e-068
Identities = 48/54 (88%), Positives = 48/54 (88%)
Frame = -2 / +2
Query: 513 CVFSGVFGSGVTFYLQSWCISVRGPLYSAMFKPLCTVITTVFAAAVLREELHVG 352
C GV GSGVTFYLQSW ISVRGPLYSAMF PLCTVITTVFAAAVLREELHVG
Sbjct: 236 CNVQGVLGSGVTFYLQSWSISVRGPLYSAMFNPLCTVITTVFAAAVLREELHVG 397
Score = 101 bits (216), Expect(5) = 7e-068
Identities = 39/44 (88%), Positives = 44/44 (100%)
Frame = -2 / +3
Query: 633 PLALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFS 502
PLALSAWMC+LSTLQSALLV+FLLPDP+AWRIHSLF+LSCC+FS
Sbjct: 3 PLALSAWMCLLSTLQSALLVAFLLPDPAAWRIHSLFDLSCCLFS 134
Score = 97.7 bits (207), Expect(2) = 1e-021
Identities = 41/61 (67%), Positives = 47/61 (77%)
Frame = +1 / -3
Query: 451 GDAPRLQVERDAGPEHAREDAAGELEERVDPPGAGVRQEEGDEQRGLERGQDAHPRRQSQ 630
GD R + E + RE+AAGE+EERVDPPG VRQEEGDEQRGLERG++AHPRRQ Q
Sbjct: 185 GDGQREEEEACMVDDSYREEAAGEVEERVDPPGGRVRQEEGDEQRGLERGEEAHPRRQRQ 6
Query: 631 R 633
R
Sbjct: 5 R 3
Score = 86.8 bits (183), Expect(5) = 1e-059
Identities = 36/44 (81%), Positives = 37/44 (84%)
Frame = +2 / -1
Query: 503 EKTQQESSKSEWILQALGSGRRKETSSADWSVDRTHIHADRASG 634
EK QQE SKSEWI QA GSGRRK TSSADWSV+R HIHAD ASG
Sbjct: 133 EKRQQERSKSEWIRQAAGSGRRKATSSADWSVERRHIHADSASG 2
Score = 63.4 bits (132), Expect(5) = 7e-068
Identities = 22/25 (88%), Positives = 22/25 (88%)
Frame = -3 / +2
Query: 344 WARSPSSRGCTWCCGAKRATPTRAG 270
WARSPSSRGCTWCCGAKRATP G
Sbjct: 482 WARSPSSRGCTWCCGAKRATPRGGG 556
Score = 35.4 bits (71), Expect(5) = 1e-059
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = +1 / -2
Query: 256 VLWLHPALVGVARFAPQHHV 315
+L L P +GVARFAPQHHV
Sbjct: 570 LLVLQPPPLGVARFAPQHHV 511
Score = 34.5 bits (69), Expect(5) = 1e-059
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +2 / -3
Query: 311 TYSPAMTAIAPSKL 352
TYSPAMTAIAPSKL
Sbjct: 515 TYSPAMTAIAPSKL 474
Score = 34.1 bits (68), Expect(5) = 1e-059
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +3 / -1
Query: 177 RRCHCRRRPSN 209
RRCHCRRRPSN
Sbjct: 652 RRCHCRRRPSN 620
Score = 31.3 bits (62), Expect(5) = 7e-068
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -1 / +3
Query: 208 FDGRRRQWHR 179
FDGRRRQWHR
Sbjct: 621 FDGRRRQWHR 650
Score = 29.0 bits (57), Expect(2) = 1e-021
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2 / -3
Query: 188 LPTPAVELGSDRADDXFSRSAEWCSG 265
+P P + SDRAD S+E CSG
Sbjct: 647 MPLPTSTIESDRADVFSKSSSECCSG 570
Score = 22.1 bits (42), Expect(5) = 7e-068
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3 / +2
Query: 266 SQSTTRPIWRXRHQRGRI 213
SQS+TR R +RGRI
Sbjct: 569 SQSSTRTTTWRRRRRGRI 622
>gb|CW288796.1|CW288796 104_767_11412140_148_35540_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11412140, DNA
sequence
Length = 588
Score = 115 bits (246), Expect(5) = 2e-053
Identities = 49/53 (92%), Positives = 50/53 (94%)
Frame = +2 / +3
Query: 344 SKLPTCSSSRRTAAANTVVITVQSGLNMAE*SGPLTEMHHDCR*NVTPDPNTP 502
+ LPTCSSSRRTAAA TVVITVQSGLNMAE*SGPLTEM HDCR*NVTPDPNTP
Sbjct: 315 TNLPTCSSSRRTAAAKTVVITVQSGLNMAE*SGPLTEMLHDCR*NVTPDPNTP 473
Score = 115 bits (246), Expect(4) = 1e-054
Identities = 48/54 (88%), Positives = 48/54 (88%)
Frame = -2 / -3
Query: 513 CVFSGVFGSGVTFYLQSWCISVRGPLYSAMFKPLCTVITTVFAAAVLREELHVG 352
C GV GSGVTFYLQSW ISVRGPLYSAMF PLCTVITTVFAAAVLREELHVG
Sbjct: 484 CNVQGVLGSGVTFYLQSWSISVRGPLYSAMFNPLCTVITTVFAAAVLREELHVG 323
Score = 70.7 bits (148), Expect(5) = 2e-053
Identities = 26/33 (78%), Positives = 29/33 (87%)
Frame = +3 / +2
Query: 111 EHLKSSKIPSTSPLDRRPPGGARRCHCRRRPSN 209
++ + KIPSTSPLDRR PGGARRCHCRRRPSN
Sbjct: 2 QNTEEQKIPSTSPLDRRRPGGARRCHCRRRPSN 100
Score = 65.2 bits (136), Expect(4) = 1e-054
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = -1 / -1
Query: 208 FDGRRRQWHRRAPPGGRRSNGEVDGI 131
FDGRRRQWHRRAPPG RRSNGEV+GI
Sbjct: 99 FDGRRRQWHRRAPPGRRRSNGEVEGI 22
Score = 63.4 bits (132), Expect(4) = 1e-054
Identities = 22/25 (88%), Positives = 22/25 (88%)
Frame = -3 / -3
Query: 344 WARSPSSRGCTWCCGAKRATPTRAG 270
WARSPSSRGCTWCCGAKRATP G
Sbjct: 238 WARSPSSRGCTWCCGAKRATPRGGG 164
Score = 61.1 bits (127), Expect(4) = 6e-022
Identities = 25/36 (69%), Positives = 30/36 (83%)
Frame = -2 / -2
Query: 366 ELHVGSLLGAIAVIAGLYVVLWGKAGDANKGGVEPE 259
E + SLLGAIAVIAGLYVVLWGKAGDA + G++ +
Sbjct: 260 ERWISSLLGAIAVIAGLYVVLWGKAGDAKRRGLQDQ 153
Score = 47.8 bits (98), Expect(4) = 6e-022
Identities = 20/27 (74%), Positives = 22/27 (81%)
Frame = -2 / -2
Query: 210 NSTAGVGSGIAEPLLAGGDPTEK*MGF 130
+S VG+GIAEPLLAGGDPT K* GF
Sbjct: 101 DSMVDVGNGIAEPLLAGGDPTAK*RGF 21
Score = 35.4 bits (71), Expect(5) = 2e-053
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = +1 / +3
Query: 256 VLWLHPALVGVARFAPQHHV 315
+L L P +GVARFAPQHHV
Sbjct: 150 LLVLQPPPLGVARFAPQHHV 209
Score = 34.5 bits (69), Expect(5) = 2e-053
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +2 / +1
Query: 311 TYSPAMTAIAPSKL 352
TYSPAMTAIAPSKL
Sbjct: 205 TYSPAMTAIAPSKL 246
Score = 31.3 bits (62), Expect(4) = 6e-022
Identities = 14/18 (77%), Positives = 14/18 (77%)
Frame = -1 / -2
Query: 472 PAVVVHLREGXALLRHVQ 419
PAVV HL E ALLRHVQ
Sbjct: 443 PAVVEHLGERPALLRHVQ 390
Score = 29.0 bits (57), Expect(5) = 2e-053
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2 / +1
Query: 188 LPTPAVELGSDRADDXFSRSAEWCSG 265
+P P + SDRAD S+E CSG
Sbjct: 73 MPLPTSTIESDRADVFSKSSSECCSG 150
Score = 27.2 bits (53), Expect(4) = 1e-054
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -2 / -2
Query: 267 EPEHHSADLEKXSSARSDPNSTAGVG 190
EPE HS D + +SARSD G G
Sbjct: 152 EPEQHSDDDLEKTSARSDSMVDVGNG 75
Score = 22.1 bits (42), Expect(4) = 6e-022
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3 / -3
Query: 266 SQSTTRPIWRXRHQRGRI 213
SQS+TR R +RGRI
Sbjct: 151 SQSSTRTTTWRRRRRGRI 98
>gb|CL151656.1|CL151656 104_334_10779411_114_31361_195 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10779411, DNA
sequence
Length = 696
Score = 105 bits (223), Expect(3) = 9e-051
Identities = 40/50 (80%), Positives = 44/50 (88%)
Frame = -2 / +2
Query: 501 GVFGSGVTFYLQSWCISVRGPLYSAMFKPLCTVITTVFAAAVLREELHVG 352
GVFGSG FYLQSWCISVRGPLYSAMF PLCTV+TT +AA+L E+LHVG
Sbjct: 248 GVFGSGAVFYLQSWCISVRGPLYSAMFTPLCTVLTTALSAAILHEQLHVG 397
Score = 96.8 bits (205), Expect(3) = 1e-033
Identities = 40/51 (78%), Positives = 42/51 (82%)
Frame = +2 / -1
Query: 350 LPTCSSSRRTAAANTVVITVQSGLNMAE*SGPLTEMHHDCR*NVTPDPNTP 502
LPTCS S R AA + VV TVQSG+NMAE* GPLTEMHHDCR*N PDPNTP
Sbjct: 399 LPTCSCSWRMAAESAVVSTVQSGVNMAE*RGPLTEMHHDCR*NTAPDPNTP 247
Score = 82.2 bits (173), Expect(3) = 9e-051
Identities = 33/44 (75%), Positives = 36/44 (81%)
Frame = -2 / +3
Query: 633 PLALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFS 502
PL LSAW C LSTLQSA++ FLLPD SAWRIHSLFELSC F+
Sbjct: 27 PLCLSAWTCFLSTLQSAVVAFFLLPDRSAWRIHSLFELSCYAFA 158
Score = 65.7 bits (137), Expect(3) = 1e-033
Identities = 28/44 (63%), Positives = 33/44 (75%)
Frame = +1 / -2
Query: 502 REDAAGELEERVDPPGAGVRQEEGDEQRGLERGQDAHPRRQSQR 633
RE AGELEERVDPP A VRQ+E + GL+ GQ+A P RQ+QR
Sbjct: 158 REGVAGELEERVDPPRATVRQQEESDHGGLQGGQEAGPGRQAQR 27
Score = 56.5 bits (117), Expect(3) = 9e-051
Identities = 24/43 (55%), Positives = 29/43 (67%)
Frame = -2 / +3
Query: 351 SLLGAIAVIAGLYVVLWGKAGDANKGGVEPEHHSADLEKXSSA 223
SL+GA AVIAGLY+VLWGKA DA G + P D K ++A
Sbjct: 567 SLVGAAAVIAGLYIVLWGKAKDARTGRIPPALRRKDCAKAAAA 695
Score = 23.5 bits (45), Expect(3) = 1e-033
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +2 / -3
Query: 320 PAMTAIAPSKL 352
PAMTA AP+KL
Sbjct: 598 PAMTAAAPTKL 566
>gb|CD231386.1|CD231386 SS1_16_C08.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_16_C08_A012 3', mRNA sequence
Length = 619
Score = 115 bits (246), Expect(4) = 3e-041
Identities = 49/53 (92%), Positives = 50/53 (94%)
Frame = +2 / -1
Query: 344 SKLPTCSSSRRTAAANTVVITVQSGLNMAE*SGPLTEMHHDCR*NVTPDPNTP 502
+ LPTCSSSRRTAAA TVVITVQSGLNMAE*SGPLTEM HDCR*NVTPDPNTP
Sbjct: 211 TNLPTCSSSRRTAAAKTVVITVQSGLNMAE*SGPLTEMLHDCR*NVTPDPNTP 53
Score = 115 bits (246), Expect(3) = 4e-041
Identities = 48/54 (88%), Positives = 48/54 (88%)
Frame = -2 / +3
Query: 513 CVFSGVFGSGVTFYLQSWCISVRGPLYSAMFKPLCTVITTVFAAAVLREELHVG 352
C GV GSGVTFYLQSW ISVRGPLYSAMF PLCTVITTVFAAAVLREELHVG
Sbjct: 42 CNVQGVLGSGVTFYLQSWSISVRGPLYSAMFNPLCTVITTVFAAAVLREELHVG 203
Score = 72.5 bits (152), Expect(2) = 5e-023
Identities = 27/36 (75%), Positives = 30/36 (83%)
Frame = +3 / -1
Query: 102 ARTEHLKSSKIPSTSPLDRRPPGGARRCHCRRRPSN 209
A ++ + KIPSTSPLDRR PGGARRCHCRRRPSN
Sbjct: 445 AHAQNTEEQKIPSTSPLDRRRPGGARRCHCRRRPSN 338
Score = 65.2 bits (136), Expect(3) = 4e-041
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = -1 / +3
Query: 208 FDGRRRQWHRRAPPGGRRSNGEVDGI 131
FDGRRRQWHRRAPPG RRSNGEV+GI
Sbjct: 339 FDGRRRQWHRRAPPGRRRSNGEVEGI 416
Score = 58.3 bits (121), Expect(2) = 5e-023
Identities = 23/29 (79%), Positives = 24/29 (82%)
Frame = +1 / -3
Query: 412 ERFEHGGVERXPHGDAPRLQVERDAGPEH 498
ER EHGGVER H DAPRLQVERDA P+H
Sbjct: 143 ERVEHGGVERASHRDAPRLQVERDA*PQH 57
Score = 58.3 bits (121), Expect(4) = 3e-041
Identities = 21/27 (77%), Positives = 25/27 (92%)
Frame = +2 / -3
Query: 128 QNPIYFSVGSPPARRGSAMPLPTPAVE 208
+NP+YF+VGSPPARRGSAMPLPT +E
Sbjct: 419 KNPLYFAVGSPPARRGSAMPLPTSTIE 339
Score = 29.0 bits (57), Expect(4) = 3e-041
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2 / -3
Query: 188 LPTPAVELGSDRADDXFSRSAEWCSG 265
+P P + SDRAD S+E CSG
Sbjct: 365 MPLPTSTIESDRADVFSKSSSECCSG 288
Score = 27.2 bits (53), Expect(3) = 4e-041
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -2 / +1
Query: 267 EPEHHSADLEKXSSARSDPNSTAGVG 190
EPE HS D + +SARSD G G
Sbjct: 286 EPEQHSDDDLEKTSARSDSMVDVGNG 363
Score = 23.1 bits (44), Expect(4) = 3e-041
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +2 / -2
Query: 101 RTHRTLEEQQNPI 139
RTHRTL +++P+
Sbjct: 444 RTHRTLRSKKSPL 406
>gb|CD226061.1|CD226061 CCC1_43_A06.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_43_A06_A007 3', mRNA sequence
Length = 644
Score = 140 bits (301), Expect = 2e-032
Identities = 51/95 (53%), Positives = 69/95 (72%)
Frame = -2 / +1
Query: 546 WRIHSLFELSCCVFSGVFGSGVTFYLQSWCISVRGPLYSAMFKPLCTVITTVFAAAVLRE 367
W++ S +E C ++ GVF SG F+LQSWCI+V+GPLYSA+F PL VIT + + + E
Sbjct: 19 WKLTSFWEFPCILYGGVFASGANFFLQSWCIAVKGPLYSAIFTPLSAVITAILSTLFMHE 198
Query: 366 ELHVGSLLGAIAVIAGLYVVLWGKAGDANKGGVEP 262
+LHV S+LGA+ +I GLYVVLWGKA D G ++P
Sbjct: 199 QLHVESVLGAVTIIVGLYVVLWGKADDTKGGDLQP 303
>gb|CW322387.1|CW322387 104_816_11476070_148_35955_061 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11476070, DNA
sequence
Length = 718
Score = 105 bits (223), Expect(2) = 5e-032
Identities = 40/50 (80%), Positives = 44/50 (88%)
Frame = -2 / -2
Query: 501 GVFGSGVTFYLQSWCISVRGPLYSAMFKPLCTVITTVFAAAVLREELHVG 352
GVFGSG FYLQSWCISVRGPLYSAMF PLCTV+TT +AA+L E+LHVG
Sbjct: 660 GVFGSGAVFYLQSWCISVRGPLYSAMFTPLCTVLTTALSAAILHEQLHVG 511
Score = 56.5 bits (117), Expect(2) = 5e-032
Identities = 24/43 (55%), Positives = 29/43 (67%)
Frame = -2 / -3
Query: 351 SLLGAIAVIAGLYVVLWGKAGDANKGGVEPEHHSADLEKXSSA 223
SL+GA AVIAGLY+VLWGKA DA G + P D K ++A
Sbjct: 341 SLVGAAAVIAGLYIVLWGKAEDARTGRIPPALRRKDCAKAAAA 213
>gb|CW403977.1|CW403977 fsbb001f095o23k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f095o23, DNA
sequence
Length = 525
Score = 105 bits (223), Expect(2) = 6e-031
Identities = 40/50 (80%), Positives = 44/50 (88%)
Frame = -2 / +1
Query: 501 GVFGSGVTFYLQSWCISVRGPLYSAMFKPLCTVITTVFAAAVLREELHVG 352
GVFGSG FYLQSWCISVRGPLYSAMF PLCTV+TT +AA+L E+LHVG
Sbjct: 40 GVFGSGAVFYLQSWCISVRGPLYSAMFTPLCTVLTTALSAAILHEQLHVG 189
Score = 52.4 bits (108), Expect(2) = 6e-031
Identities = 21/30 (70%), Positives = 24/30 (80%)
Frame = -2 / +2
Query: 351 SLLGAIAVIAGLYVVLWGKAGDANKGGVEP 262
SL+GA AVIAGLY+VLWGKA DA G + P
Sbjct: 359 SLVGAAAVIAGLYIVLWGKAKDARTGRIPP 448
>gb|CW226721.1|CW226721 104_664_11205036_148_37217_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11205036, DNA
sequence
Length = 697
Score = 72.5 bits (152), Expect(4) = 3e-025
Identities = 27/36 (75%), Positives = 30/36 (83%)
Frame = +3 / +2
Query: 102 ARTEHLKSSKIPSTSPLDRRPPGGARRCHCRRRPSN 209
A ++ + KIPSTSPLDRR PGGARRCHCRRRPSN
Sbjct: 365 AHAQNTEEQKIPSTSPLDRRRPGGARRCHCRRRPSN 472
Score = 65.2 bits (136), Expect(3) = 1e-025
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = -1 / -2
Query: 208 FDGRRRQWHRRAPPGGRRSNGEVDGI 131
FDGRRRQWHRRAPPG RRSNGEV+GI
Sbjct: 471 FDGRRRQWHRRAPPGRRRSNGEVEGI 394
Score = 63.4 bits (132), Expect(3) = 1e-025
Identities = 22/25 (88%), Positives = 22/25 (88%)
Frame = -3 / -1
Query: 344 WARSPSSRGCTWCCGAKRATPTRAG 270
WARSPSSRGCTWCCGAKRATP G
Sbjct: 610 WARSPSSRGCTWCCGAKRATPRGGG 536
Score = 35.4 bits (71), Expect(4) = 3e-025
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = +1 / +3
Query: 256 VLWLHPALVGVARFAPQHHV 315
+L L P +GVARFAPQHHV
Sbjct: 522 LLVLQPPPLGVARFAPQHHV 581
Score = 34.5 bits (69), Expect(4) = 3e-025
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +2 / +1
Query: 311 TYSPAMTAIAPSKL 352
TYSPAMTAIAPSKL
Sbjct: 577 TYSPAMTAIAPSKL 618
Score = 29.0 bits (57), Expect(4) = 3e-025
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2 / +1
Query: 188 LPTPAVELGSDRADDXFSRSAEWCSG 265
+P P + SDRAD S+E CSG
Sbjct: 445 MPLPTSTIESDRADVFSKSSSECCSG 522
Score = 27.2 bits (53), Expect(3) = 1e-025
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -2 / -3
Query: 267 EPEHHSADLEKXSSARSDPNSTAGVG 190
EPE HS D + +SARSD G G
Sbjct: 524 EPEQHSDDDLEKTSARSDSMVDVGNG 447
>gb|CN143415.1|CN143415 WOUND1_16_D04.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_16_D04_A002 3', mRNA sequence
Length = 679
Score = 117 bits (250), Expect = 2e-025
Identities = 45/103 (43%), Positives = 69/103 (66%)
Frame = -2 / +3
Query: 594 LQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSWCISVRGPLYSAMFKP 415
LQ ++ F D S W++HS EL +++G+ SGV F LQ WCI GPL++A+F+P
Sbjct: 9 LQFLVIAVFTEEDLSRWKVHSGVELFTILYAGLVASGVAFALQIWCIDRGGPLFTAVFQP 188
Query: 414 LCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGD 286
+ TV V AAA+L ++L+ G ++GA+ ++ GLY VLWGK+ +
Sbjct: 189 VQTVAVAVMAAAILGDQLYTGGIIGAVLIVIGLYFVLWGKSAE 317
>gb|CF433922.1|CF433922 NIT1_31_F11.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_31_F11_A002 3', mRNA sequence
Length = 732
Score = 111 bits (237), Expect = 1e-023
Identities = 43/129 (33%), Positives = 75/129 (58%)
Frame = -2 / +1
Query: 630 LALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSWCIS 451
+ ++ C+ ST+QS ++ D S W++ L ++SG +GV++YLQ+WCI
Sbjct: 142 MVVTVTQCLFSTVQSFIVAVVAERDFSKWKLRFDISLLAILYSGFMVTGVSYYLQTWCIE 321
Query: 450 VRGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGDANKGG 271
+RGP++ A + PLC V T ++ L E +H+GS+LG I ++ LY +LWGK+ +
Sbjct: 322 MRGPMFFAAWTPLCFVFTIFCSSFFLGEIVHLGSILGGILLVGSLYTMLWGKSKEVKTDN 501
Query: 270 VEPEHHSAD 244
+ + A+
Sbjct: 502 ITHDTEKAE 528
>gb|CF489902.1|CF489902 POL1_61_G04.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_61_G04_A002 3', mRNA sequence
Length = 581
Score = 110 bits (235), Expect = 3e-023
Identities = 38/92 (41%), Positives = 60/92 (65%)
Frame = -2 / +2
Query: 558 DPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSWCISVRGPLYSAMFKPLCTVITTVFAAA 379
D S WR+ L C +SG+F SG+ + +WC+ RGPL+ ++F PL ++ V ++
Sbjct: 5 DASQWRLKFNIRLLSCAYSGIFASGIALVIMAWCVKQRGPLFVSVFSPLMLLMVAVLSSL 184
Query: 378 VLREELHVGSLLGAIAVIAGLYVVLWGKAGDA 283
+L E+LH+G+ LGA+ ++ GLY VLWGK +A
Sbjct: 185 LLGEKLHLGTALGAVLIVMGLYAVLWGKGREA 280
>gb|CD236446.1|CD236446 SS1_34_F06.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_34_F06_A012 3', mRNA sequence
Length = 421
Score = 69.3 bits (145), Expect(2) = 3e-023
Identities = 22/43 (51%), Positives = 33/43 (76%)
Frame = -2 / +2
Query: 546 WRIHSLFELSCCVFSGVFGSGVTFYLQSWCISVRGPLYSAMFK 418
W++ S +E C ++ GVF SG F+LQSWCI+V+GPLY++M +
Sbjct: 23 WKLTSFWEFPCILYGGVFASGANFFLQSWCIAVKGPLYNSMLE 151
Score = 60.6 bits (126), Expect(2) = 3e-023
Identities = 22/35 (62%), Positives = 28/35 (80%)
Frame = -2 / +1
Query: 366 ELHVGSLLGAIAVIAGLYVVLWGKAGDANKGGVEP 262
+LHVGS+LGA+ +I GLYVVLWGKA D G ++P
Sbjct: 136 QLHVGSVLGAVTIIVGLYVVLWGKADDTKGGDLQP 240
>gb|CW355734.1|CW355734 fsbb001f020i03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f020i03, DNA
sequence
Length = 700
Score = 82.2 bits (173), Expect(2) = 3e-023
Identities = 30/50 (60%), Positives = 38/50 (76%)
Frame = -2 / -2
Query: 501 GVFGSGVTFYLQSWCISVRGPLYSAMFKPLCTVITTVFAAAVLREELHVG 352
GVF SG F+LQSWCI+V+GPLYSA+F PL VIT + + + E+LHVG
Sbjct: 669 GVFASGANFFLQSWCIAVKGPLYSAIFTPLSAVITAILSTLFMHEQLHVG 520
Score = 49.6 bits (102), Expect(2) = 3e-023
Identities = 18/30 (60%), Positives = 23/30 (76%)
Frame = -2 / -1
Query: 351 SLLGAIAVIAGLYVVLWGKAGDANKGGVEP 262
S+LGA+ +I GLYVVLWGKA D G ++P
Sbjct: 358 SVLGAVTIIVGLYVVLWGKADDTKGGDLQP 269
>gb|CX606827.1|CX606827 ANR1_5_E02.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_5_E02_A002 3', mRNA sequence
Length = 791
Score = 77.6 bits (163), Expect(2) = 9e-023
Identities = 26/73 (35%), Positives = 47/73 (64%)
Frame = -2 / +1
Query: 609 CVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSWCISVRGPLYS 430
C+ T+QS ++ + DPS W++ L +SG+ G+GV FYLQ+WC+ ++GP++
Sbjct: 178 CLFGTVQSCVVAVAIERDPSRWKLGLDLSLLAVAYSGIVGTGVCFYLQTWCVDMKGPVFL 357
Query: 429 AMFKPLCTVITTV 391
AM+ P+ ++T +
Sbjct: 358 AMWYPMSLLLTVL 396
Score = 50.6 bits (104), Expect(2) = 9e-023
Identities = 18/38 (47%), Positives = 28/38 (73%)
Frame = -2 / +1
Query: 408 TVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGK 295
+++ TV +++L E H+GS+LG I ++ GLY VLWGK
Sbjct: 376 SLLLTVLGSSLLGETTHLGSILGGILLVGGLYCVLWGK 489
>gb|CX617984.1|CX617984 GABR1_37_B11.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_37_B11_A002 3', mRNA sequence
Length = 756
Score = 77.6 bits (163), Expect(2) = 9e-023
Identities = 26/73 (35%), Positives = 47/73 (64%)
Frame = -2 / +3
Query: 609 CVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSWCISVRGPLYS 430
C+ T+QS ++ + DPS W++ L +SG+ G+GV FYLQ+WC+ ++GP++
Sbjct: 114 CLFGTVQSCVVAVAIERDPSRWKLGLDLSLLAVAYSGIVGTGVCFYLQTWCVDMKGPVFL 293
Query: 429 AMFKPLCTVITTV 391
AM+ P+ ++T +
Sbjct: 294 AMWYPMSLLLTVL 332
Score = 50.6 bits (104), Expect(2) = 9e-023
Identities = 18/38 (47%), Positives = 28/38 (73%)
Frame = -2 / +3
Query: 408 TVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGK 295
+++ TV +++L E H+GS+LG I ++ GLY VLWGK
Sbjct: 312 SLLLTVLGSSLLGETTHLGSILGGILLVGGLYCVLWGK 425
>gb|CW436518.1|CW436518 fsbb001f153c19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f153c19, DNA
sequence
Length = 656
Score = 93.6 bits (198), Expect(2) = 2e-022
Identities = 31/73 (42%), Positives = 51/73 (69%)
Frame = -2 / +2
Query: 501 GVFGSGVTFYLQSWCISVRGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIA 322
G+F SG+ + +WC+ RGPL+ ++F PL ++ V ++ +L E+LH+G+ LGA+ ++
Sbjct: 272 GIFASGIALVIMAWCVKQRGPLFVSVFSPLMLLMVAVLSSLLLGEKLHLGTALGAVLIVM 451
Query: 321 GLYVVLWGKAGDA 283
GLY VLWGK +A
Sbjct: 452 GLYAVLWGKGREA 490
Score = 33.6 bits (67), Expect(2) = 2e-022
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -2 / +3
Query: 621 SAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGV 496
+A MC++ +LQSA+ D S WR+ L C +S V
Sbjct: 72 TALMCIMISLQSAVFAICFDRDASQWRLKFNIRLLSCAYSVV 197
>gb|CF484703.1|CF484703 POL1_27_A10.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_27_A10_A002 3', mRNA sequence
Length = 628
Score = 106 bits (226), Expect = 4e-022
Identities = 41/111 (36%), Positives = 67/111 (60%)
Frame = -2 / +3
Query: 609 CVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSWCISVRGPLYS 430
CV+ +L+S ++ + D + W + +L V+SGV +GVTF L SW +S RGP+Y
Sbjct: 27 CVVGSLESLVVGMCISHDHAEWALKWDMQLLTVVYSGVLNTGVTFVLISWAVSRRGPIYP 206
Query: 429 AMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGDANK 277
MF L ++ T+ + +L +++GS+LG + ++ GLY LWGK +A K
Sbjct: 207 PMFNSLSLIVATILDSVLLGTNIYLGSVLGTLLIVVGLYAFLWGKGKEAKK 359
>gb|CW233992.1|CW233992 104_687_11213743_148_37382_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11213743, DNA
sequence
Length = 680
Score = 61.6 bits (128), Expect(3) = 1e-021
Identities = 23/31 (74%), Positives = 27/31 (87%)
Frame = -2 / -3
Query: 444 GPLYSAMFKPLCTVITTVFAAAVLREELHVG 352
GPLYSAMF PLCTV+TT +AA+L E+LHVG
Sbjct: 657 GPLYSAMFTPLCTVLTTALSAAILHEQLHVG 565
Score = 56.5 bits (117), Expect(3) = 1e-021
Identities = 24/43 (55%), Positives = 29/43 (67%)
Frame = -2 / -1
Query: 351 SLLGAIAVIAGLYVVLWGKAGDANKGGVEPEHHSADLEKXSSA 223
SL+GA AVIAGLY+VLWGKA DA G + P D K ++A
Sbjct: 395 SLVGAAAVIAGLYIVLWGKAEDARTGRIPPALRRKDCAKAAAA 267
Score = 26.7 bits (52), Expect(3) = 1e-021
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -2 / -1
Query: 468 QSWCISVRG 442
QSWCISVRG
Sbjct: 680 QSWCISVRG 654
>gb|CW239805.1|CW239805 104_698_11217856_148_37523_060 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11217856, DNA
sequence
Length = 602
Score = 97.7 bits (207), Expect(2) = 4e-021
Identities = 36/84 (42%), Positives = 55/84 (65%)
Frame = -2 / +1
Query: 546 WRIHSLFELSCCVFSGVFGSGVTFYLQSWCISVRGPLYSAMFKPLCTVITTVFAAAVLRE 367
WR+ L +SGV SGV + SWC+ RGPL++++F PL ++ V ++ +L E
Sbjct: 202 WRLGLDVRLLSVAYSGVLASGVMLVVLSWCVKKRGPLFASVFNPLMLLVVAVLSSLLLGE 381
Query: 366 ELHVGSLLGAIAVIAGLYVVLWGK 295
+L++GS LGA+ ++ GLY VLWGK
Sbjct: 382 KLYLGSALGAVLIVLGLYAVLWGK 453
Score = 24.9 bits (48), Expect(2) = 4e-021
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -2 / +1
Query: 621 SAWMCVLSTLQSALL 577
+A MCV+STLQS L
Sbjct: 121 TALMCVMSTLQSVAL 165
>gb|CN126603.1|CN126603 RHOH1_18_D06.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_18_D06_A002 3', mRNA sequence
Length = 801
Score = 102 bits (217), Expect = 8e-021
Identities = 41/115 (35%), Positives = 64/115 (55%)
Frame = -2 / +3
Query: 630 LALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSWCIS 451
L+L+ +C ++S + + D AW I L V+SG+ SGV +Y+Q I
Sbjct: 126 LSLTTLICATGAMESGAVALVMERDTKAWSIGFDIRLFTAVYSGIMCSGVAYYVQGIVIK 305
Query: 450 VRGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGD 286
RGP++ F PLC +I TV + +L E + +G L+GA ++ GLY ++WGK D
Sbjct: 306 ERGPVFVTAFSPLCMIIVTVLGSFILSEVVTLGRLIGATVIVVGLYALIWGKNMD 470
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 876,295,015
Number of Sequences: 832831
Number of extensions: 13169295
Number of successful extensions: 190745
Number of sequences better than 1.0e-020: 20
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 24713245856
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)