TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3562100.2.1
(759 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG159361.1|BG159361 OV2_6_G12.g1_A002 Ovary 2 (OV2) Sorg... 225 6e-058
gb|CN139974.1|CN139974 OX1_33_F07.b1_A002 Oxidatively-stres... 224 2e-057
gb|AW283881.1|AW283881 LG1_282_A07.g1_A002 Light Grown 1 (L... 123 3e-049
gb|BG101804.1|BG101804 RHIZ2_22_F05.g1_A003 Rhizome2 (RHIZ2... 182 5e-048
gb|BM328755.1|BM328755 PIC1_26_B07.g1_A002 Pathogen-infecte... 181 1e-044
gb|CN145002.1|CN145002 WOUND1_26_E07.b2_A002 Wounded leaves... 169 4e-041
gb|CF488456.1|CF488456 POL1_50_C12.b1_A002 Pollen Sorghum b... 168 7e-041
gb|BG465944.1|BG465944 RHIZ2_46_E09.g1_A003 Rhizome2 (RHIZ2... 166 3e-040
gb|CD228545.1|CD228545 CCC1_8_A06.b1_A007 Callus culture/ce... 162 5e-039
gb|CD227672.1|CD227672 CCC1_53_D08.b1_A007 Callus culture/c... 162 6e-039
gb|CX612583.1|CX612583 GABR1_3_F09.b1_A002 GA- or brassinol... 162 6e-039
gb|CW070747.1|CW070747 104_322_10590981_116_30543 Sorghum m... 108 2e-036
gb|CW410942.1|CW410942 fsbb001f105o10k0 Sorghum methylation... 88 2e-031
gb|CX608003.1|CX608003 ANR1_32_C02.b1_A002 Anaerobic roots ... 129 5e-029
gb|AW283437.3|AW283437 LG1_272_B09.g1_A002 Light Grown 1 (L... 86 5e-027
gb|CW444206.1|CW444206 fsbb001f164l01k0 Sorghum methylation... 88 8e-022
>gb|BG159361.1|BG159361 OV2_6_G12.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 486
Score = 225 bits (486), Expect = 6e-058
Identities = 94/107 (87%), Positives = 100/107 (93%)
Frame = +3 / +3
Query: 33 DXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNHLYIGDIFLVN 212
D N AFKEVAII HPR+GEYAFGFITST+VLQTDKGDEELCSVYVPTNHLYIGDIFLVN
Sbjct: 12 DQNTTAFKEVAIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVN 191
Query: 213 SAEIIRPNLSIREGIEIIVSGGMTMPQVIMSLEPTPRKSQNVRLDRV 353
S EIIRPNLSIREGIEIIVSGGMTMPQVI SLEP PRKSQ++RL+R+
Sbjct: 192 SEEIIRPNLSIREGIEIIVSGGMTMPQVIASLEPMPRKSQSIRLNRM 332
Score = 180 bits (388), Expect = 2e-044
Identities = 79/104 (75%), Positives = 90/104 (86%)
Frame = -3 / -3
Query: 349 LSKRTFWLFRGVGSSDMITCGIVIPPETIISMPSRIDKLGLIISAEFTKKMSPIYK*LVG 170
L +R WLFRG+GSSD IT G+VIPPETIIS+PSR+DKLGLIIS+EFT+ MSP+Y+* VG
Sbjct: 328 LFRRMLWLFRGIGSSDAIT*GMVIPPETIISIPSRMDKLGLIISSEFTRNMSPMYR*FVG 149
Query: 169 T*TLHNSSSPLSV*RTMVDVMNPNAYSPTRG*LMIATSLNAXXF 38
T TLH+SSSPLSV*RT VDVMNPNAYSP RG* +IATSL A F
Sbjct: 148 TYTLHSSSSPLSV*RTTVDVMNPNAYSPIRG*RIIATSLKAVVF 17
Score = 133 bits (285), Expect = 3e-030
Identities = 63/107 (58%), Positives = 73/107 (68%)
Frame = -2 / -2
Query: 353 HSV*TDVLALPRCWFQ*HDHLRXXXXXXXNYFYAFTNRQIGPYNFGGVYQKDVTNI*MIG 174
HS+*T+ LA PR Q* +HLR NYF +F N I YN V+QK VT++*MI
Sbjct: 332 HSI*TNALAFPRHRLQ*CNHLRHGHSS*NNYFNSFPNG*IRSYNLLRVHQKYVTDV*MIC 153
Query: 173 WHINTTQFFITFVCLKNHG*CYESKCIFTNTGMTNDCYFFECXXIXI 33
WHI+TTQFFI FV LK+H *CYESKCIFTN+ MTN C FFE I I
Sbjct: 152 WHIHTTQFFIAFVSLKDHR*CYESKCIFTNSWMTNYCNFFESCCILI 12
Score = 123 bits (264), Expect = 2e-027
Identities = 67/108 (62%), Positives = 70/108 (64%)
Frame = +1 / +1
Query: 31 QIXXXXHSKK*QSLVIPVLVNMHLDS*HQPWFFRQTKVMKNCVVFMCQPIIYILVTSFW* 210
QI SKK Q VI LVNMHLDS*HQ W FR TK MKNCVV MCQ IIY VT FW*
Sbjct: 10 QIKIQQLSKKLQ*FVIHELVNMHLDS*HQRWSFRLTKAMKNCVVCMCQQIIYTSVTYFW* 189
Query: 211 TPPKL*GPICLFVKA*K*LFQEE*LCRR*SCHWNQHLGRARTSV*TE* 354
T +L* I F K K*LFQEE* C R* HW+ G+AR V* E*
Sbjct: 190 TLRRL*DLIYPFGKELK*LFQEE*PCLR*LHHWSLCRGKARAFV*IE* 333
Score = 111 bits (237), Expect = 1e-023
Identities = 60/110 (54%), Positives = 68/110 (61%)
Frame = -1 / -1
Query: 360 LSSLCLNGRSGSSEVLVPVT*SPAA*SFLLKQLFLCLHE*TNWAL*FRRSLPKRCHQYIN 181
++S L+ SG S PV SP A SFLLKQLF L E N L* +S P+ CH+ I+
Sbjct: 339 ITSFYLDECSGFSAA*APVMQSPEAWSFLLKQLFQFLPEWIN*VL*SPQSSPEICHRCID 160
Query: 180 DWLAHKHYTILHHLCLSEEPWLML*IQMHIHQHGDDXXXXXL*MLXXXDL 31
D LAH HYT+LH LC SE P LML*IQMHIHQ DD L* L DL
Sbjct: 159 DLLAHTHYTVLHRLCQSEGPPLML*IQMHIHQFVDDELLQLL*KLLYFDL 10
>gb|CN139974.1|CN139974 OX1_33_F07.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_33_F07_A002 3', mRNA sequence
Length = 608
Score = 224 bits (483), Expect = 2e-057
Identities = 95/117 (81%), Positives = 101/117 (86%)
Frame = +3 / +2
Query: 3 SXXVXTXXXXDXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNH 182
S V T D N AFKEVAII HPR+GEYA GFITST+VLQTDKGDEELCSVYVPTNH
Sbjct: 56 SKQVSTAISPDQNTTAFKEVAIIRHPRIGEYALGFITSTVVLQTDKGDEELCSVYVPTNH 235
Query: 183 LYIGDIFLVNSAEIIRPNLSIREGIEIIVSGGMTMPQVIMSLEPTPRKSQNVRLDRV 353
LYIGDIFLVN EIIRPNLSIREGIEIIVSGGMTMPQVI SLEP PRKSQ++RL+R+
Sbjct: 236 LYIGDIFLVNCEEIIRPNLSIREGIEIIVSGGMTMPQVIASLEPMPRKSQSIRLNRM 406
Score = 182 bits (393), Expect = 4e-045
Identities = 82/116 (70%), Positives = 94/116 (81%)
Frame = -3 / -3
Query: 349 LSKRTFWLFRGVGSSDMITCGIVIPPETIISMPSRIDKLGLIISAEFTKKMSPIYK*LVG 170
L +R WLFRG+GSSD IT G+VIPPETIIS+PSR+DKLGLIIS++FT+ MSP+Y+* VG
Sbjct: 402 LFRRMLWLFRGIGSSDAIT*GMVIPPETIISIPSRMDKLGLIISSQFTRNMSPMYR*FVG 223
Query: 169 T*TLHNSSSPLSV*RTMVDVMNPNAYSPTRG*LMIATSLNAXXFXSXXXXVXTXXD 2
T TLH+SSSPLSV*RT VDVMNPNAYSP RG* +IATSL A F S V T D
Sbjct: 222 TYTLHSSSSPLSV*RTTVDVMNPNAYSPIRG*RIIATSLKAVVF*SGEIAVLTCFD 55
Score = 128 bits (274), Expect = 1e-028
Identities = 60/107 (56%), Positives = 72/107 (67%)
Frame = -2 / -2
Query: 353 HSV*TDVLALPRCWFQ*HDHLRXXXXXXXNYFYAFTNRQIGPYNFGGVYQKDVTNI*MIG 174
HS+*T+ LA PR Q* +HLR NYF +F N I YN V+QK VT++*MI
Sbjct: 406 HSI*TNALAFPRHRLQ*CNHLRHGHSS*NNYFNSFPNG*IRSYNLLTVHQKYVTDV*MIC 227
Query: 173 WHINTTQFFITFVCLKNHG*CYESKCIFTNTGMTNDCYFFECXXIXI 33
W I+TTQFFI FV LK+H *CYES+C+F N+GMTN C FFE I I
Sbjct: 226 WDIHTTQFFIAFVSLKDHR*CYESQCVFANSGMTNYCNFFESCCILI 86
Score = 118 bits (252), Expect = 1e-025
Identities = 65/116 (56%), Positives = 68/116 (58%)
Frame = +1 / +3
Query: 4 QXXXXLXXXQIXXXXHSKK*QSLVIPVLVNMHLDS*HQPWFFRQTKVMKNCVVFMCQPII 183
Q L QI SKK Q VIP L N H DS*HQ W FR TK MKNCVV M Q II
Sbjct: 57 QSKSALQFHQIKIQQLSKKLQ*FVIPELANTHWDS*HQRWSFRLTKAMKNCVVCMSQQII 236
Query: 184 YILVTSFW*TPPKL*GPICLFVKA*K*LFQEE*LCRR*SCHWNQHLGRARTSV*TE 351
Y VT FW*T +L* I F K K*LFQEE* C R* HW+ G+AR V* E
Sbjct: 237 YTSVTYFW*TVRRL*DLIYPFGKELK*LFQEE*PCLR*LHHWSLCRGKARAFV*IE 404
>gb|AW283881.1|AW283881 LG1_282_A07.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 446
Score = 123 bits (263), Expect(5) = 8e-048
Identities = 49/54 (90%), Positives = 50/54 (92%)
Frame = +2 / +1
Query: 203 FGKLRRNYKAQFVYS*RHRNNCFRRNDYAAGDHVTGTNTSEEPERPFRQSEDSM 364
FGKLRRNY AQFV+S*RHRNNCFRRNDYA GDHVTGTNTSEEPE PFRQSED M
Sbjct: 1 FGKLRRNY*AQFVHS*RHRNNCFRRNDYATGDHVTGTNTSEEPEHPFRQSEDCM 162
Score = 122 bits (262), Expect(6) = 3e-049
Identities = 51/54 (94%), Positives = 53/54 (98%)
Frame = -3 / -3
Query: 364 HTVLTLSKRTFWLFRGVGSSDMITCGIVIPPETIISMPSRIDKLGLIISAEFTK 203
HTVLTLSKR FWLFRGVGSSD+ITCGIVIPPETIISMPSR+DKLGLIISAEFTK
Sbjct: 162 HTVLTLSKRMFWLFRGVGSSDVITCGIVIPPETIISMPSRMDKLGLIISAEFTK 1
Score = 117 bits (251), Expect(3) = 2e-040
Identities = 52/54 (96%), Positives = 53/54 (98%)
Frame = +3 / +2
Query: 204 LVNSAEIIRPNLSIREGIEIIVSGGMTMPQVIMSLEPTPRKSQNVRLDRVRTV* 365
LVNSAEIIRPNLSIREGIEIIVSGGMTMPQVI SLEPTPRKSQN+RLDRVRTV*
Sbjct: 2 LVNSAEIIRPNLSIREGIEIIVSGGMTMPQVITSLEPTPRKSQNIRLDRVRTV* 163
Score = 108 bits (231), Expect(4) = 5e-033
Identities = 48/54 (88%), Positives = 49/54 (90%)
Frame = +1 / +3
Query: 205 W*TPPKL*GPICLFVKA*K*LFQEE*LCRR*SCHWNQHLGRARTSV*TE*GQYD 366
W*TPPKL GPIC FVKA*K*LFQEE*LC R*S HWNQHLGRARTSV*TE*G Y+
Sbjct: 3 W*TPPKLLGPICPFVKA*K*LFQEE*LCHR*SRHWNQHLGRARTSV*TE*GLYE 164
Score = 105 bits (223), Expect(4) = 1e-038
Identities = 48/54 (88%), Positives = 49/54 (90%)
Frame = -1 / -1
Query: 366 VILSSLCLNGRSGSSEVLVPVT*SPAA*SFLLKQLFLCLHE*TNWAL*FRRSLP 205
+I SSLCLNG SGSSEVLVPVT*SP A*SFLLKQLFLCLHE TNWA *FRRSLP
Sbjct: 164 LIQSSLCLNGCSGSSEVLVPVT*SPVA*SFLLKQLFLCLHEWTNWA**FRRSLP 3
Score = 100 bits (212), Expect(3) = 2e-030
Identities = 43/60 (71%), Positives = 45/60 (75%)
Frame = -2 / -2
Query: 383 HACLIQSYCPHSV*TDVLALPRCWFQ*HDHLRXXXXXXXNYFYAFTNRQIGPYNFGGVYQ 204
+A + SY PHSV*TDVLALPRCWFQ* DHL NYFYAFTN QIGP NFGGVYQ
Sbjct: 181 NAFIHASYSPHSV*TDVLALPRCWFQ*RDHLWHSHSS*NNYFYAFTNGQIGPNNFGGVYQ 2
Score = 55.1 bits (114), Expect(5) = 8e-048
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +3 / +2
Query: 450 QSICRLHSELAHYWQIHDNLALTCVAISW*HENCSS 557
+S+CRLHSEL +IHDNL + I W*H+NCSS
Sbjct: 242 KSVCRLHSELGCALEIHDNLHCLALPIGW*HKNCSS 349
Score = 54.2 bits (112), Expect(3) = 2e-040
Identities = 25/35 (71%), Positives = 26/35 (74%)
Frame = +1 / +3
Query: 451 NQFVDCIQNLRIIGRYMTTSH*LALQSVGDTKIAA 555
NQFVDCIQN + RYMTT L QSVGDTKIAA
Sbjct: 243 NQFVDCIQNSGVH*RYMTTCTVLRCQSVGDTKIAA 347
Score = 49.2 bits (101), Expect(6) = 3e-049
Identities = 22/35 (62%), Positives = 25/35 (71%)
Frame = -1 / -1
Query: 555 SCNFRVTN*LQRKLVRGCHVSANNAQVLNAIYKLI 451
SCNF VTN L + GCHVS + +VLNAIYKLI
Sbjct: 347 SCNFCVTNRLATQDSAGCHVSLMHTRVLNAIYKLI 243
Score = 47.3 bits (97), Expect(4) = 1e-038
Identities = 22/43 (51%), Positives = 23/43 (53%)
Frame = -3 / -3
Query: 556 ELQFSCHQLIATQVSARLSCICQ*CASSECNLQIDCLKLHAPA 428
ELQF CHQ I RLSCI SSECNLQ D P+
Sbjct: 348 ELQFLCHQPIGNARQCRLSCISNAHPSSECNLQTDLPHASCPS 220
Score = 46.0 bits (94), Expect(3) = 2e-030
Identities = 24/44 (54%), Positives = 28/44 (63%)
Frame = -2 / -2
Query: 563 VSGAAIFVSPTDCNAS*CEVVMYLPIMRKF*MQSTN*LSQAPCP 432
+S AAIFVSPTD +VVMYL +F*MQSTN* + P
Sbjct: 355 IS*AAIFVSPTDWQRKTVQVVMYL*CTPEF*MQSTN*FASCFMP 224
Score = 38.2 bits (77), Expect(4) = 5e-033
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +2 / +1
Query: 443 LETINL*IAFRTCALLADT*QPRTNLRCNQLVTRK 547
+ I+L*IAFRT + DT*QP + N+LVT+K
Sbjct: 235 MRQISL*IAFRTRVCIRDT*QPALSCVANRLVTQK 339
Score = 36.3 bits (73), Expect(4) = 1e-038
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = -1 / -3
Query: 444 SSMPQL*IHNQQAILKHPSLSCMPHTVILSS 352
+S P +Q ILKHP+LS MPHTV+ S
Sbjct: 234 ASCPSFESVTKQFILKHPTLSFMPHTVLTLS 142
Score = 35.0 bits (70), Expect(5) = 8e-048
Identities = 15/24 (62%), Positives = 15/24 (62%)
Frame = +1 / +1
Query: 364 DCMRHA*K*WVFQDGLLVMDSKLG 435
DCMRH *K WVFQD L K G
Sbjct: 154 DCMRHE*KRWVFQDELFGYRFKAG 225
Score = 33.6 bits (67), Expect(3) = 2e-040
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = +2 / +2
Query: 365 TV*GMHESDGCFRMACWLWIQSWGME 442
TV*GM+ES GCFRM C + G E
Sbjct: 155 TV*GMNESVGCFRMNCLVTDSKLGHE 232
Score = 33.1 bits (66), Expect(6) = 3e-049
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -3 / -2
Query: 412 TSHPETPITFMHASYS 365
T HPETP F+HASYS
Sbjct: 202 TIHPETPNAFIHASYS 155
Score = 29.5 bits (58), Expect(5) = 8e-048
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +1 / +2
Query: 625 ERDSMLHLPVLLV 663
ERDSM HLPVLLV
Sbjct: 407 ERDSMQHLPVLLV 445
Score = 29.5 bits (58), Expect(6) = 3e-049
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = -3 / -1
Query: 664 TQVALVDAALNHVQQTR 614
TQV LVDAALN VQ R
Sbjct: 446 TQVTLVDAALNRVQHYR 396
Score = 28.6 bits (56), Expect(6) = 3e-049
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -3 / -1
Query: 451 CLKLHAPALNP*PTS 407
CL LHAPALN *P +
Sbjct: 242 CLMLHAPALNR*PNN 198
Score = 28.6 bits (56), Expect(4) = 1e-038
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = -2 / -3
Query: 662 TSSTGRCSIESRS 624
TS+TGRC IESRS
Sbjct: 444 TSNTGRCCIESRS 406
Score = 25.8 bits (50), Expect(3) = 2e-030
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2 / -3
Query: 452 LSQAPCPSFESITNK 408
L A CPSFES+T +
Sbjct: 243 LPHASCPSFESVTKQ 199
Score = 25.8 bits (50), Expect(4) = 5e-033
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3 / +3
Query: 366 LYEACMKVMGVSGWLV 413
LYEA MK +GVSG +V
Sbjct: 156 LYEA*MKALGVSG*IV 203
Score = 25.4 bits (49), Expect(4) = 5e-033
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +2 / +3
Query: 413 WLWIQSWGMELE 448
WL IQSWGM+ E
Sbjct: 204 WLPIQSWGMKHE 239
Score = 22.6 bits (43), Expect(5) = 8e-048
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +1 / +2
Query: 589 N*SPAAC*VVFA 624
N* PA C*+VFA
Sbjct: 362 N*FPAVC*IVFA 397
Score = 22.6 bits (43), Expect(6) = 3e-049
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = -1 / -2
Query: 621 KHDLARSWRSVK 586
K+DLA W+SV+
Sbjct: 394 KYDLAHCWKSVR 359
>gb|BG101804.1|BG101804 RHIZ2_22_F05.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 290
Score = 182 bits (392), Expect(2) = 5e-048
Identities = 78/81 (96%), Positives = 79/81 (97%)
Frame = +3 / +3
Query: 123 VLQTDKGDEELCSVYVPTNHLYIGDIFLVNSAEIIRPNLSIREGIEIIVSGGMTMPQVIM 302
VLQTDKGDEELCSVYVPTNHLYIGDIFLVNSAEIIRPNLSIREGIEIIVSGGMTMPQVI
Sbjct: 3 VLQTDKGDEELCSVYVPTNHLYIGDIFLVNSAEIIRPNLSIREGIEIIVSGGMTMPQVIT 182
Query: 303 SLEPTPRKSQNVRLDRVRTV* 365
SLEPTPRKSQN+RLDRVR V*
Sbjct: 183 SLEPTPRKSQNIRLDRVRNV* 245
Score = 177 bits (380), Expect(2) = 3e-046
Identities = 77/81 (95%), Positives = 79/81 (97%)
Frame = -3 / -2
Query: 364 HTVLTLSKRTFWLFRGVGSSDMITCGIVIPPETIISMPSRIDKLGLIISAEFTKKMSPIY 185
HT LTLSKR FWLFRGVGSSD+ITCGIVIPPETIISMPSR+DKLGLIISAEFTKKMSPIY
Sbjct: 244 HTFLTLSKRMFWLFRGVGSSDVITCGIVIPPETIISMPSRMDKLGLIISAEFTKKMSPIY 65
Query: 184 K*LVGT*TLHNSSSPLSV*RT 122
K*LVGT*TLHNSSSPLSV*RT
Sbjct: 64 K*LVGT*TLHNSSSPLSV*RT 2
Score = 173 bits (373), Expect(2) = 3e-045
Identities = 72/81 (88%), Positives = 74/81 (91%)
Frame = +2 / +2
Query: 122 GSSDRQR**RIV*CLCANQSFIYW*HLFGKLRRNYKAQFVYS*RHRNNCFRRNDYAAGDH 301
GSSDRQR**RIV*CLC NQSFIYW HLFGKLR NY AQFV+S*RHRNNCFRRNDYA GDH
Sbjct: 2 GSSDRQR**RIV*CLCPNQSFIYWRHLFGKLR*NY*AQFVHS*RHRNNCFRRNDYATGDH 181
Query: 302 VTGTNTSEEPERPFRQSEDSM 364
VTGTNTSEEPE PFRQSE+ M
Sbjct: 182 VTGTNTSEEPEHPFRQSEECM 244
Score = 173 bits (372), Expect(2) = 7e-045
Identities = 73/82 (89%), Positives = 75/82 (91%)
Frame = -1 / -3
Query: 366 VILSSLCLNGRSGSSEVLVPVT*SPAA*SFLLKQLFLCLHE*TNWAL*FRRSLPKRCHQY 187
+I SSLCLNG SGSSEVLVPVT*SP A*SFLLKQLFLCLHE TNWA *F+RSLPKRC QY
Sbjct: 246 LIHSSLCLNGCSGSSEVLVPVT*SPVA*SFLLKQLFLCLHEWTNWA**FQRSLPKRCLQY 67
Query: 186 INDWLAHKHYTILHHLCLSEEP 121
INDWL HKHYTILHHLCLSEEP
Sbjct: 66 INDWLGHKHYTILHHLCLSEEP 1
Score = 168 bits (361), Expect(2) = 1e-041
Identities = 73/82 (89%), Positives = 74/82 (90%)
Frame = +1 / +1
Query: 121 WFFRQTKVMKNCVVFMCQPIIYILVTSFW*TPPKL*GPICLFVKA*K*LFQEE*LCRR*S 300
WFFRQTKVMKNCVVFM QPIIYIL TSFW*TP KL GPIC FVKA*K*LFQEE*LC R*S
Sbjct: 1 WFFRQTKVMKNCVVFMSQPIIYILETSFW*TPLKLLGPICPFVKA*K*LFQEE*LCHR*S 180
Query: 301 CHWNQHLGRARTSV*TE*GQYD 366
HWNQHLGRARTSV*TE*G Y+
Sbjct: 181 RHWNQHLGRARTSV*TE*GMYE 246
Score = 158 bits (339), Expect = 1e-037
Identities = 67/87 (77%), Positives = 70/87 (80%)
Frame = -2 / -1
Query: 383 HACLIQSYCPHSV*TDVLALPRCWFQ*HDHLRXXXXXXXNYFYAFTNRQIGPYNFGGVYQ 204
+A + SY PHSV*TDVLALPRCWFQ* DHL NYFYAFTN QIGP NF GVYQ
Sbjct: 263 NALIHASYIPHSV*TDVLALPRCWFQ*RDHLWHSHSS*NNYFYAFTNGQIGPNNFSGVYQ 84
Query: 203 KDVTNI*MIGWHINTTQFFITFVCLKN 123
KDV+NI*MIGW INTTQFFITFVCLKN
Sbjct: 83 KDVSNI*MIGWDINTTQFFITFVCLKN 3
Score = 29.9 bits (59), Expect(2) = 5e-048
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +1 / +2
Query: 364 DCMRHA*K*WVFQDGL 411
+CMRH K WVFQD L
Sbjct: 236 ECMRHESKRWVFQDEL 283
Score = 29.5 bits (58), Expect(2) = 3e-045
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +2 / +3
Query: 368 V*GMHESDGCFRMAC 412
V*GM++S GCFRM C
Sbjct: 240 V*GMNQSVGCFRMNC 284
Score = 29.5 bits (58), Expect(2) = 3e-046
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1 / -2
Query: 414 QQAILKHPSLSCMPHTVILSS 352
+Q ILKHP+L MPHT + S
Sbjct: 286 KQFILKHPTL*FMPHTFLTLS 224
Score = 28.6 bits (56), Expect(2) = 7e-045
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -3 / -1
Query: 412 TSHPETPITFMHASY 368
T HPETP +HASY
Sbjct: 284 TIHPETPNALIHASY 240
Score = 23.1 bits (44), Expect(2) = 1e-041
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +3 / +1
Query: 366 LYEACMKVMGVSGWLV 413
+YEA +K +GVSG +V
Sbjct: 238 MYEA*IKALGVSG*IV 285
>gb|BM328755.1|BM328755 PIC1_26_B07.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 574
Score = 181 bits (389), Expect = 1e-044
Identities = 76/84 (90%), Positives = 81/84 (96%)
Frame = +3 / +2
Query: 102 GFITSTMVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSAEIIRPNLSIREGIEIIVSGGM 281
GFITST+VLQTDKGDEELCSVYVPTNHLYIGDIFLVNS EIIRPNLSIREGIEIIVSGGM
Sbjct: 2 GFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSEEIIRPNLSIREGIEIIVSGGM 181
Query: 282 TMPQVIMSLEPTPRKSQNVRLDRV 353
TMPQVI SLEP PRKSQ++RL+R+
Sbjct: 182 TMPQVIASLEPMPRKSQSIRLNRM 253
Score = 149 bits (321), Expect = 3e-035
Identities = 64/83 (77%), Positives = 74/83 (89%)
Frame = -3 / -2
Query: 349 LSKRTFWLFRGVGSSDMITCGIVIPPETIISMPSRIDKLGLIISAEFTKKMSPIYK*LVG 170
L +R WLFRG+GSSD IT G+VIPPETIIS+PSR+DKLGLIIS+EFT+ MSP+Y+* VG
Sbjct: 249 LFRRMLWLFRGIGSSDAIT*GMVIPPETIISIPSRMDKLGLIISSEFTRNMSPMYR*FVG 70
Query: 169 T*TLHNSSSPLSV*RTMVDVMNP 101
T TLH+SSSPLSV*RT VDVMNP
Sbjct: 69 TYTLHSSSSPLSV*RTTVDVMNP 1
>gb|CN145002.1|CN145002 WOUND1_26_E07.b2_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_26_E07_A002 3', mRNA sequence
Length = 794
Score = 169 bits (364), Expect = 4e-041
Identities = 68/104 (65%), Positives = 83/104 (79%)
Frame = +3 / +1
Query: 3 SXXVXTXXXXDXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNH 182
S + D N AFKEV II HPRVGEYAFGFITS++ LQ+ G E+L VYVPTNH
Sbjct: 223 SKQISAAISPDQNKQAFKEVVIIRHPRVGEYAFGFITSSVSLQSYSGQEDLYCVYVPTNH 402
Query: 183 LYIGDIFLVNSAEIIRPNLSIREGIEIIVSGGMTMPQVIMSLEP 314
LYIGDIF+VNS ++IRPNLS+REGIEI+VSGGM+MPQ++ +L+P
Sbjct: 403 LYIGDIFMVNSKDVIRPNLSVREGIEIVVSGGMSMPQILSTLDP 534
>gb|CF488456.1|CF488456 POL1_50_C12.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_50_C12_A002 3', mRNA sequence
Length = 564
Score = 168 bits (362), Expect = 7e-041
Identities = 67/94 (71%), Positives = 81/94 (86%)
Frame = +3 / +1
Query: 33 DXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNHLYIGDIFLVN 212
D N AFKEV II HPRVGEYAFGFITS++ LQ+ G E+L VYVPTNHLYIGDIF+VN
Sbjct: 28 DQNKQAFKEVVIIRHPRVGEYAFGFITSSVSLQSYSGQEDLYCVYVPTNHLYIGDIFMVN 207
Query: 213 SAEIIRPNLSIREGIEIIVSGGMTMPQVIMSLEP 314
S ++IRPNLS+REGIEI+VSGGM+MPQ++ +L+P
Sbjct: 208 SKDVIRPNLSVREGIEIVVSGGMSMPQILSTLDP 309
>gb|BG465944.1|BG465944 RHIZ2_46_E09.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 602
Score = 166 bits (358), Expect = 3e-040
Identities = 70/77 (90%), Positives = 74/77 (96%)
Frame = +3 / +2
Query: 123 VLQTDKGDEELCSVYVPTNHLYIGDIFLVNSAEIIRPNLSIREGIEIIVSGGMTMPQVIM 302
VLQTDKGDEELCSVYVPTNHLYIGDIFLVNS EIIRPNLSIREGIEIIVSGGMTMPQVI
Sbjct: 2 VLQTDKGDEELCSVYVPTNHLYIGDIFLVNSEEIIRPNLSIREGIEIIVSGGMTMPQVIA 181
Query: 303 SLEPTPRKSQNVRLDRV 353
SLEP PRKSQ++RL+R+
Sbjct: 182 SLEPMPRKSQSIRLNRM 232
Score = 134 bits (287), Expect = 2e-030
Identities = 57/76 (75%), Positives = 68/76 (89%)
Frame = -3 / -3
Query: 349 LSKRTFWLFRGVGSSDMITCGIVIPPETIISMPSRIDKLGLIISAEFTKKMSPIYK*LVG 170
L +R WLFRG+GSSD IT G+VIPPETIIS+PSR+DKLGL+IS+EFT+ MSP+Y+* VG
Sbjct: 228 LFRRMLWLFRGIGSSDAIT*GMVIPPETIISIPSRMDKLGLMISSEFTRNMSPMYR*FVG 49
Query: 169 T*TLHNSSSPLSV*RT 122
T TLH+SSSPLSV*RT
Sbjct: 48 TYTLHSSSSPLSV*RT 1
>gb|CD228545.1|CD228545 CCC1_8_A06.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_8_A06_A007 3', mRNA sequence
Length = 652
Score = 162 bits (349), Expect = 5e-039
Identities = 68/76 (89%), Positives = 73/76 (96%)
Frame = +3 / +3
Query: 126 LQTDKGDEELCSVYVPTNHLYIGDIFLVNSAEIIRPNLSIREGIEIIVSGGMTMPQVIMS 305
LQTDKGDEELCSVYVPTNHLYIGDIFLV+S EIIRPNLSIREGIEIIVSGGMTMPQVI S
Sbjct: 3 LQTDKGDEELCSVYVPTNHLYIGDIFLVDSEEIIRPNLSIREGIEIIVSGGMTMPQVIAS 182
Query: 306 LEPTPRKSQNVRLDRV 353
LEP PRKSQ++RL+R+
Sbjct: 183 LEPMPRKSQSIRLNRM 230
Score = 129 bits (277), Expect = 4e-029
Identities = 56/75 (74%), Positives = 66/75 (88%)
Frame = -3 / -1
Query: 349 LSKRTFWLFRGVGSSDMITCGIVIPPETIISMPSRIDKLGLIISAEFTKKMSPIYK*LVG 170
L +R WLFRG+GSSD IT G+VIPPETIIS+PSR+DKLGLIIS+E T+ MSP+Y+* VG
Sbjct: 226 LFRRMLWLFRGIGSSDAIT*GMVIPPETIISIPSRMDKLGLIISSESTRNMSPMYR*FVG 47
Query: 169 T*TLHNSSSPLSV*R 125
T TLH+SSSPLSV*R
Sbjct: 46 TYTLHSSSSPLSV*R 2
>gb|CD227672.1|CD227672 CCC1_53_D08.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_53_D08_A007 3', mRNA sequence
Length = 655
Score = 162 bits (348), Expect = 6e-039
Identities = 67/116 (57%), Positives = 84/116 (72%)
Frame = +3 / +3
Query: 3 SXXVXTXXXXDXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNH 182
S + D N AFKEV II HPR+GEYAFGFITS ++LQ +E++ VYVPTNH
Sbjct: 51 SKQISAAISPDQNKHAFKEVVIIRHPRIGEYAFGFITSEVLLQGYSSEEKMYCVYVPTNH 230
Query: 183 LYIGDIFLVNSAEIIRPNLSIREGIEIIVSGGMTMPQVIMSLEPTPRKSQNVRLDR 350
LYIGDIFLV+S+++IRPN+S+REGIEI+VS G TMPQV+ LE P + +R R
Sbjct: 231 LYIGDIFLVSSSDVIRPNMSVREGIEIVVSVGTTMPQVLSILETEPNQLNRIRSTR 398
>gb|CX612583.1|CX612583 GABR1_3_F09.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_3_F09_A002 3', mRNA sequence
Length = 724
Score = 162 bits (348), Expect = 6e-039
Identities = 67/116 (57%), Positives = 84/116 (72%)
Frame = +3 / +3
Query: 3 SXXVXTXXXXDXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNH 182
S + D N AFKEV II HPR+GEYAFGFITS ++LQ +E++ VYVPTNH
Sbjct: 183 SKQISAAISPDQNKHAFKEVVIIRHPRIGEYAFGFITSEVLLQGYSSEEKMYCVYVPTNH 362
Query: 183 LYIGDIFLVNSAEIIRPNLSIREGIEIIVSGGMTMPQVIMSLEPTPRKSQNVRLDR 350
LYIGDIFLV+S+++IRPN+S+REGIEI+VS G TMPQV+ LE P + +R R
Sbjct: 363 LYIGDIFLVSSSDVIRPNMSVREGIEIVVSVGTTMPQVLSILETEPNQLNRIRSTR 530
>gb|CW070747.1|CW070747 104_322_10590981_116_30543 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10590981, DNA
sequence
Length = 656
Score = 108 bits (231), Expect(2) = 2e-036
Identities = 44/50 (88%), Positives = 48/50 (96%)
Frame = +3 / +3
Query: 120 MVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSAEIIRPNLSIREGIEIIV 269
++LQTDKGDEELCSVYVPTNHLYIGDIFLVNS EIIRPNLSIREGI ++V
Sbjct: 387 LLLQTDKGDEELCSVYVPTNHLYIGDIFLVNSEEIIRPNLSIREGIGMVV 536
Score = 80.3 bits (169), Expect(2) = 2e-024
Identities = 34/47 (72%), Positives = 42/47 (89%)
Frame = -3 / -2
Query: 271 ETIISMPSRIDKLGLIISAEFTKKMSPIYK*LVGT*TLHNSSSPLSV 131
+T I +PSR+DKLGLIIS+EFT+ MSP+Y+* VGT TLH+SSSPLSV
Sbjct: 538 KTTIPIPSRMDKLGLIISSEFTRNMSPMYR*FVGTYTLHSSSSPLSV 398
Score = 67.5 bits (141), Expect(2) = 2e-036
Identities = 27/33 (81%), Positives = 29/33 (87%)
Frame = +3 / +3
Query: 33 DXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQ 131
D N AFKEVAII HPR+GEYAFGFITST+VLQ
Sbjct: 57 DQNTTAFKEVAIIRHPRIGEYAFGFITSTVVLQ 155
Score = 55.6 bits (115), Expect(2) = 2e-024
Identities = 23/33 (69%), Positives = 25/33 (75%)
Frame = -2 / -1
Query: 131 LKNHG*CYESKCIFTNTGMTNDCYFFECXXIXI 33
LK+H *CYESKCIFTN+ MTN C FFE I I
Sbjct: 155 LKDHR*CYESKCIFTNSWMTNYCNFFESCCILI 57
>gb|CW410942.1|CW410942 fsbb001f105o10k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f105o10, DNA
sequence
Length = 747
Score = 88.1 bits (186), Expect(4) = 2e-031
Identities = 33/37 (89%), Positives = 34/37 (91%)
Frame = +2 / +1
Query: 254 HRNNCFRRNDYAAGDHVTGTNTSEEPERPFRQSEDSM 364
+RNNCFRRNDYA GDHVTGTNTSEEPE PFRQSED M
Sbjct: 223 YRNNCFRRNDYATGDHVTGTNTSEEPEHPFRQSEDCM 333
Score = 86.3 bits (182), Expect(4) = 7e-031
Identities = 36/44 (81%), Positives = 38/44 (86%)
Frame = -3 / -1
Query: 364 HTVLTLSKRTFWLFRGVGSSDMITCGIVIPPETIISMPSRIDKL 233
HTVLTLSKR FWLFRGVGSSD+ITCGIVIPPETIIS+ KL
Sbjct: 333 HTVLTLSKRMFWLFRGVGSSDVITCGIVIPPETIISVAHTTAKL 202
Score = 79.9 bits (168), Expect(2) = 4e-023
Identities = 35/44 (79%), Positives = 38/44 (86%)
Frame = +3 / +2
Query: 234 NLSIREGIEIIVSGGMTMPQVIMSLEPTPRKSQNVRLDRVRTV* 365
N ++ EIIVSGGMTMPQVI SLEPTPRKSQN+RLDRVRTV*
Sbjct: 203 NFAVVCATEIIVSGGMTMPQVITSLEPTPRKSQNIRLDRVRTV* 334
Score = 70.3 bits (147), Expect(4) = 2e-023
Identities = 33/37 (89%), Positives = 34/37 (91%)
Frame = -1 / -2
Query: 366 VILSSLCLNGRSGSSEVLVPVT*SPAA*SFLLKQLFL 256
+I SSLCLNG SGSSEVLVPVT*SP A*SFLLKQLFL
Sbjct: 335 LIQSSLCLNGCSGSSEVLVPVT*SPVA*SFLLKQLFL 225
Score = 55.1 bits (114), Expect(4) = 2e-031
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +3 / +1
Query: 450 QSICRLHSELAHYWQIHDNLALTCVAISW*HENCSS 557
+S+CRLHSEL +IHDNL + I W*H+NCSS
Sbjct: 640 KSVCRLHSELGVALEIHDNLHCLALPIGW*HKNCSS 747
Score = 51.5 bits (106), Expect(2) = 4e-023
Identities = 25/35 (71%), Positives = 25/35 (71%)
Frame = +1 / +2
Query: 451 NQFVDCIQNLRIIGRYMTTSH*LALQSVGDTKIAA 555
NQFVDCIQN RYMTT L QSVGDTKIAA
Sbjct: 641 NQFVDCIQNSGWH*RYMTTCTVLRCQSVGDTKIAA 745
Score = 48.3 bits (99), Expect(4) = 7e-031
Identities = 22/43 (51%), Positives = 23/43 (53%)
Frame = -3 / -2
Query: 556 ELQFSCHQLIATQVSARLSCICQ*CASSECNLQIDCLKLHAPA 428
ELQF CHQ I RLSCI SSECNLQ D P+
Sbjct: 746 ELQFLCHQPIGNARQCRLSCISNATPSSECNLQTDLPHASCPS 618
Score = 47.3 bits (97), Expect(4) = 2e-023
Identities = 22/35 (62%), Positives = 24/35 (68%)
Frame = -1 / -3
Query: 555 SCNFRVTN*LQRKLVRGCHVSANNAQVLNAIYKLI 451
SCNF VTN L + GCHVS +VLNAIYKLI
Sbjct: 745 SCNFCVTNRLATQDSAGCHVSLMPPRVLNAIYKLI 641
Score = 29.9 bits (59), Expect(4) = 7e-031
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -1 / -1
Query: 417 NQQAILKHPSLSCMPHTVILSS 352
+++ L HP+LS MPHTV+ S
Sbjct: 378 SRRIYLNHPTLSFMPHTVLTLS 313
Score = 29.5 bits (58), Expect(4) = 7e-031
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3 / -3
Query: 451 CLKLHAPALNP*PTSHPETP 392
CL LHAPALN *P + +P
Sbjct: 640 CLMLHAPALNR*PNNSSCSP 581
Score = 27.2 bits (53), Expect(4) = 2e-031
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +1 / +1
Query: 364 DCMRHA*K*WVFQ 402
DCMRH *K WV Q
Sbjct: 325 DCMRHE*KRWVVQ 363
Score = 25.8 bits (50), Expect(4) = 2e-023
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2 / -2
Query: 452 LSQAPCPSFESITNK 408
L A CPSFES+T +
Sbjct: 641 LPHASCPSFESVTKQ 597
Score = 25.4 bits (49), Expect(4) = 2e-031
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +2 / +2
Query: 413 WLWIQSWGMELE 448
WL IQSWGM+ E
Sbjct: 602 WLPIQSWGMKHE 637
Score = 25.4 bits (49), Expect(4) = 2e-023
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -3 / -3
Query: 403 PETPITFMHASYS 365
PE P F+HASYS
Sbjct: 364 PEPPNAFIHASYS 326
>gb|CX608003.1|CX608003 ANR1_32_C02.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_32_C02_A002 3', mRNA sequence
Length = 760
Score = 129 bits (276), Expect = 5e-029
Identities = 51/75 (68%), Positives = 63/75 (84%)
Frame = +3 / +2
Query: 33 DXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNHLYIGDIFLVN 212
D N AFKEV II HPR+GEYAFGFITS ++LQ +E++ VYVPTNHLYIGDIFLV+
Sbjct: 101 DQNKHAFKEVVIIRHPRIGEYAFGFITSEVLLQGYSSEEKMYCVYVPTNHLYIGDIFLVS 280
Query: 213 SAEIIRPNLSIREGI 257
S+++IRPN+S+REGI
Sbjct: 281 SSDVIRPNMSVREGI 325
>gb|AW283437.3|AW283437 LG1_272_B09.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 620
Score = 85.8 bits (181), Expect(2) = 5e-027
Identities = 31/55 (56%), Positives = 49/55 (89%)
Frame = +3 / +2
Query: 147 EELCSVYVPTNHLYIGDIFLVNSAEIIRPNLSIREGIEIIVSGGMTMPQVIMSLE 311
++L VYVPTN+LY+GDIFL++ A++I P+LS+RE IEI++SGGM++P++I ++E
Sbjct: 152 QDLACVYVPTNNLYLGDIFLMSRADVIIPDLSVREAIEIVLSGGMSVPKIISAVE 316
Score = 56.5 bits (117), Expect(2) = 5e-027
Identities = 22/33 (66%), Positives = 26/33 (78%)
Frame = +3 / +2
Query: 33 DXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQ 131
D + AFKEV II HPR+GEYA GFITST+ L+
Sbjct: 29 DQSSRAFKEVVIIRHPRIGEYALGFITSTVALR 127
>gb|CW444206.1|CW444206 fsbb001f164l01k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f164l01, DNA
sequence
Length = 786
Score = 88.1 bits (186), Expect(3) = 8e-022
Identities = 33/37 (89%), Positives = 34/37 (91%)
Frame = +2 / +3
Query: 254 HRNNCFRRNDYAAGDHVTGTNTSEEPERPFRQSEDSM 364
+RNNCFRRNDYA GDHVTGTNTSEEPE PFRQSED M
Sbjct: 372 YRNNCFRRNDYATGDHVTGTNTSEEPEHPFRQSEDCM 482
Score = 86.3 bits (182), Expect(3) = 2e-021
Identities = 36/44 (81%), Positives = 38/44 (86%)
Frame = -3 / -2
Query: 364 HTVLTLSKRTFWLFRGVGSSDMITCGIVIPPETIISMPSRIDKL 233
HTVLTLSKR FWLFRGVGSSD+ITCGIVIPPETIIS+ KL
Sbjct: 482 HTVLTLSKRMFWLFRGVGSSDVITCGIVIPPETIISVAHTTAKL 351
Score = 32.2 bits (64), Expect(3) = 2e-021
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = -1 / -2
Query: 417 NQQAILKHPSLSCMPHTVILSS 352
+++ LKHP+LS MPHTV+ S
Sbjct: 527 SRRIYLKHPTLSFMPHTVLTLS 462
Score = 30.4 bits (60), Expect(3) = 8e-022
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +1 / +3
Query: 364 DCMRHA*K*WVFQ 402
DCMRH *K WVFQ
Sbjct: 474 DCMRHE*KRWVFQ 512
Score = 27.2 bits (53), Expect(3) = 8e-022
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3 / +2
Query: 393 GVSGWLVGYGFKAGAW 440
G+ L GY FKAGAW
Sbjct: 731 GLQDELFGYRFKAGAW 778
Score = 26.3 bits (51), Expect(3) = 2e-021
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -2 / -3
Query: 440 PCPSFESITNK 408
PCPSFES+T +
Sbjct: 778 PCPSFESVTKQ 746
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 890,701,878
Number of Sequences: 832831
Number of extensions: 13095926
Number of successful extensions: 73302
Number of sequences better than 1.0e-020: 16
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 23525109036
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)