TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3345642.2.1
(600 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN127460.1|CN127460 RHOH1_23_D06.b1_A002 Acid- and alkal... 488 e-137
gb|CX612893.1|CX612893 GABR1_5_C04.b1_A002 GA- or brassinol... 462 e-129
gb|CD234655.1|CD234655 SS1_17_C07.b1_A012 Salt-stressed see... 390 e-107
gb|CN149194.1|CN149194 WOUND1_61_F10.b1_A002 Wounded leaves... 244 1e-063
gb|CD431168.1|CD431168 ETH1_7_B07.b1_A002 Ethylene-treated ... 230 1e-059
gb|CN140420.1|CN140420 OX1_36_B10.b1_A002 Oxidatively-stres... 230 2e-059
gb|CF487333.1|CF487333 POL1_43_D11.b1_A002 Pollen Sorghum b... 220 2e-056
gb|CW144377.1|CW144377 104_536_11137911_148_34962_056 Sorgh... 148 2e-052
gb|CF070980.1|CF070980 FE1_14_F12.g1_A002 Iron-deficient se... 188 6e-047
gb|BF587532.1|BF587532 FM1_37_E11.g1_A003 Floral-Induced Me... 174 1e-042
gb|BI139893.1|BI139893 IP1_47_A12.b1_A002 Immature pannicle... 104 1e-042
gb|BG101797.1|BG101797 RHIZ2_22_E09.g1_A003 Rhizome2 (RHIZ2... 170 2e-041
gb|CW306008.1|CW306008 104_791_11466607_148_36273_024 Sorgh... 110 5e-041
gb|BE367359.1|BE367359 PI1_4_C05.g1_A002 Pathogen induced 1... 162 3e-039
gb|BM331533.1|BM331533 PIC1_72_D10.g1_A002 Pathogen-infecte... 155 5e-037
gb|CW031244.1|CW031244 104_259_10500694_114_30397 Sorghum m... 144 1e-033
gb|CW285991.1|CW285991 104_763_11410641_116_35511_039 Sorgh... 143 3e-033
gb|CL193723.1|CL193723 104_417_10941134_116_32279_053 Sorgh... 115 5e-031
gb|BM329584.1|BM329584 PIC1_40_E09.g1_A002 Pathogen-infecte... 130 2e-029
gb|CW381875.1|CW381875 fsbb001f063h19k0 Sorghum methylation... 124 1e-027
gb|CW285992.1|CW285992 104_763_11410641_148_35507_039 Sorgh... 112 4e-024
gb|CL158360.1|CL158360 104_347_10803488_114_31377_080 Sorgh... 110 2e-023
gb|CL158361.1|CL158361 104_347_10803488_116_31378_080 Sorgh... 110 2e-023
gb|CD234075.1|CD234075 SS1_6_A11.b1_A012 Salt-stressed seed... 108 6e-023
gb|CD210962.1|CD210962 HS1_58_B05.b1_A012 Heat-shocked seed... 90 9e-023
gb|BI212063.1|BI212063 IP1_61_B03.g1_A002 Immature pannicle... 90 9e-023
gb|CW451706.1|CW451706 fsbb001f191o09k0 Sorghum methylation... 53 8e-021
>gb|CN127460.1|CN127460 RHOH1_23_D06.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_23_D06_A002 3', mRNA sequence
Length = 814
Score = 488 bits (1059), Expect = e-137
Identities = 194/198 (97%), Positives = 194/198 (97%)
Frame = +1 / +1
Query: 7 GNVIGAVETCLESFHRYHKYLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLY 186
GNVIGAVETCLESFHRYHKYLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRK NATSLY
Sbjct: 10 GNVIGAVETCLESFHRYHKYLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKENATSLY 189
Query: 187 HYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHY 366
HYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHY
Sbjct: 190 HYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHY 369
Query: 367 NGNMKPWLKLAIRRYKYIWERYVNISHPYVRECMLH*KVCKSLYVLAWH*SCMLQFLHMR 546
NGNMKPWLKLAIRRYKYIWERYVNISHPYVRECMLH*KVCKSLYVLAWH*S MLQFLHMR
Sbjct: 370 NGNMKPWLKLAIRRYKYIWERYVNISHPYVRECMLH*KVCKSLYVLAWH*SWMLQFLHMR 549
Query: 547 LLLSTLCAGKFQR*NIYS 600
LL STLC GKFQR*NIYS
Sbjct: 550 LLSSTLCEGKFQR*NIYS 603
Score = 448 bits (973), Expect = e-125
Identities = 190/198 (95%), Positives = 196/198 (98%)
Frame = -2 / -3
Query: 599 EYIFYLWNFPAHKVLKSSLM*RN*SMQLQCHARTYRDLQTF*CNIHSLTYGCEIFTYRSH 420
EYIFYL NFP+HKVL+SSLM*RN*S+QLQCHARTYRDL TF*CNIHSLTYGCEIFTYRSH
Sbjct: 602 EYIFYL*NFPSHKVLESSLM*RN*SIQLQCHARTYRDLHTF*CNIHSLTYGCEIFTYRSH 423
Query: 419 IYL*RRIASFSQGFMFPL*CTTAALSIRRSSMSTSYPRPKTCHLRSRGSIRP*NVKRPAG 240
IYL*RRIASFSQGFMFPL*CTTAALSI+RSSMSTSYPRPKTCHLRSRGSIRP*NVKRPAG
Sbjct: 422 IYL*RRIASFSQGFMFPL*CTTAALSIKRSSMSTSYPRPKTCHLRSRGSIRP*NVKRPAG 243
Query: 239 RVPVLQSNRSEFCSCQ**YNDVAFAFLQAIKSKMFIPKAHPQVCGSILELIVGCEKFRYL 60
RVPVLQSNRSEFCSCQ**YNDVAF+FLQAIKSKMFIPKAHPQVCGSILEL+VGCEKFRYL
Sbjct: 242 RVPVLQSNRSEFCSCQ**YNDVAFSFLQAIKSKMFIPKAHPQVCGSILELMVGCEKFRYL 63
Query: 59 *YR*NDSKQVSTAPMTLP 6
*YR*NDSKQVSTAPMTLP
Sbjct: 62 *YR*NDSKQVSTAPMTLP 9
Score = 416 bits (902), Expect = e-115
Identities = 182/198 (91%), Positives = 187/198 (94%)
Frame = -1 / -2
Query: 600 *VYILPLELSGT*GAQKQPHVKKLKHAASVPCKNIQRFADFLMQHTLSNIRV*DIHIPFP 421
*VYILPL+LS T*GA+KQPHVKKLKH AS+PCKNIQRFA FLMQHTLSNIRV*DIHIP P
Sbjct: 603 *VYILPLKLSLT*GARKQPHVKKLKHPASMPCKNIQRFAYFLMQHTLSNIRV*DIHIPLP 424
Query: 420 YILVTANSQLQPGFHVSIIVHNSSTLNQTIIYVYIIPETQDMPSAV*GLHQAIKCQKACR 241
YILVTAN QLQPGFHV IIVHNSSTLNQTIIYVYIIP+TQDMPSAV*GLHQAIKCQK CR
Sbjct: 423 YILVTANCQLQPGFHVPIIVHNSSTLNQTIIYVYIIPKTQDMPSAV*GLHQAIKCQKTCR 244
Query: 240 KSSCSPEQ*VRILLLPIMIQ*CGVCLPPSYQVKNVHSKSPSTSMWINLGADSRMRKI*IL 61
KSSCSPEQ*VRILLLPIMIQ* GV LPPSYQVKNVHSKSPSTSMWINLGAD +RKI*IL
Sbjct: 243 KSSCSPEQ*VRILLLPIMIQ*RGVFLPPSYQVKNVHSKSPSTSMWINLGADGWVRKI*IL 64
Query: 60 VIPMKRL*TSFHCSNDIA 7
VIPMKRL*TSFHCSNDIA
Sbjct: 63 VIPMKRL*TSFHCSNDIA 10
Score = 413 bits (897), Expect = e-115
Identities = 173/197 (87%), Positives = 177/197 (89%)
Frame = +3 / +3
Query: 9 QCHWSSGNLFRXXXXXXXXXKFFASYYQLQD*STYLWMGFWNEHF*LDSLEEGKRHIIVS 188
QCHWSSGNLFR KFFA +QLQD*STYLWMGFWNEHF*LDSLEEGKRH+IVS
Sbjct: 12 QCHWSSGNLFRVVSSVSQVSKFFAPNHQLQD*STYLWMGFWNEHF*LDSLEEGKRHVIVS 191
Query: 189 LLARAKF*PIALENRNSSCRPFDILWPDGAPRPQMACLGSRV*CRHR*SSD*ECCCCAL* 368
LLARAKF*PIALENRNSSCR FDILWPDGAPRPQMACLGS V*CRHR*S D*ECCCCAL*
Sbjct: 192 LLARAKF*PIALENRNSSCRSFDILWPDGAPRPQMACLGSWV*CRHR*SFD*ECCCCAL* 371
Query: 369 WKHETLAEAGYSPLQVYMGTVCEYLTPVC*RVYVALESLQISVCSCMALKLHASVSSHEA 548
W+HETLAEAG SPLQVYMG VCEYLTPVC*RVYVALES+QISVCSCMALKL ASVSSHEA
Sbjct: 372 WEHETLAEAGNSPLQVYMGAVCEYLTPVC*RVYVALESMQISVCSCMALKLDASVSSHEA 551
Query: 549 AFEHLMCRKVPEVEYIL 599
AFEHLM KV EVEYIL
Sbjct: 552 AFEHLM*GKVSEVEYIL 602
Score = 413 bits (896), Expect = e-114
Identities = 173/197 (87%), Positives = 175/197 (88%)
Frame = -3 / -1
Query: 598 SIYSTSGTFRHIRCSKAASCEETEACSFSAMQEHTEICRLSNATYTL*HTGVRYSHTVPI 419
SIYSTS TF HIRCSKAASCEETEA SF+AMQEHTEIC LSNATYTL*HTGVRYSHT PI
Sbjct: 601 SIYSTSETFPHIRCSKAASCEETEASSFNAMQEHTEICILSNATYTL*HTGVRYSHTAPI 422
Query: 418 YTCNGE*PASARVSCFHYSAXXXXXXXXXHLCLHHTRDPRHAICGLGAPSGHKMSKGLQE 239
YTCNGE PASARVSC HYSA HLCLHHT+DPRHAICGLGAPSGHKMSK LQE
Sbjct: 421 YTCNGELPASARVSCSHYSAQQQHSQSNDHLCLHHTQDPRHAICGLGAPSGHKMSKDLQE 242
Query: 238 EFLFSRAIGQNFALANNDTMMWRLPSSKLSSQKCSFQKPIHKYVDQSWS***DAKNLDTC 59
EFLFSRAIGQNFALANNDTM WR PSSKLSSQKCSFQKPIHKYVDQSWS* AKNLDTC
Sbjct: 241 EFLFSRAIGQNFALANNDTMTWRFPSSKLSSQKCSFQKPIHKYVDQSWS*WLGAKNLDTC 62
Query: 58 DTDETTLNKFPLLQ*HC 8
DTDETTLNKFPLLQ*HC
Sbjct: 61 DTDETTLNKFPLLQ*HC 11
Score = 405 bits (879), Expect = e-112
Identities = 181/197 (91%), Positives = 183/197 (92%)
Frame = +2 / +2
Query: 8 AMSLEQWKLV*SRFIGITSI*IFRILLSAPRLIHILVDGLLE*TFLT**LGGRQTPHHCI 187
AMSLEQWKLV*SRFIGITSI*IFR SAPRLIHILVDGLLE*TFLT**LGGR+TP HCI
Sbjct: 11 AMSLEQWKLV*SRFIGITSI*IFRTQPSAPRLIHILVDGLLE*TFLT**LGGRKTPRHCI 190
Query: 188 IIGKSKILTYCSGEQELFLQAF*HFMA*WSP*TADGMSWVSGMM*T*MIV*LRVLLLCTI 367
IIGKSKILTYCSGEQELFLQ F*HFMA*WSP*TADGMSWV GMM*T*MIV*LRVLLLCTI
Sbjct: 191 IIGKSKILTYCSGEQELFLQVF*HFMA*WSP*TADGMSWVLGMM*T*MIV*LRVLLLCTI 370
Query: 368 MET*NPG*SWLFAVTSIYGNGM*ISHTRMLESVCCIRKSANLCMFLHGTEAACFSFFT*G 547
M T*NPG*SW FAVTSIYG+GM*ISHTRMLESVCCIRK ANLCMFLHG EA CFSFFT*G
Sbjct: 371 MGT*NPG*SWQFAVTSIYGSGM*ISHTRMLESVCCIRKYANLCMFLHGIEAGCFSFFT*G 550
Query: 548 CF*APYVPESSRGRIYT 598
CF APYV ES RGRIYT
Sbjct: 551 CFRAPYVRESFRGRIYT 601
>gb|CX612893.1|CX612893 GABR1_5_C04.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_5_C04_A002 3', mRNA sequence
Length = 762
Score = 462 bits (1002), Expect = e-129
Identities = 183/187 (97%), Positives = 183/187 (97%)
Frame = +1 / +1
Query: 40 ESFHRYHKYLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLYHYWQEQNSDLL 219
ESFHRYHKYLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRK NATSLYHYWQEQNSDLL
Sbjct: 1 ESFHRYHKYLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKENATSLYHYWQEQNSDLL 180
Query: 220 LWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHYNGNMKPWLKLA 399
LWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHYNGNMKPWLKLA
Sbjct: 181 LWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHYNGNMKPWLKLA 360
Query: 400 IRRYKYIWERYVNISHPYVRECMLH*KVCKSLYVLAWH*SCMLQFLHMRLLLSTLCAGKF 579
IRRYKYIWERYVNISHPYVRECMLH*KVCKSLYVLAWH*S MLQFLHMRLL STLC GKF
Sbjct: 361 IRRYKYIWERYVNISHPYVRECMLH*KVCKSLYVLAWH*SWMLQFLHMRLLSSTLCEGKF 540
Query: 580 QR*NIYS 600
QR*NIYS
Sbjct: 541 QR*NIYS 561
Score = 421 bits (914), Expect = e-117
Identities = 178/186 (95%), Positives = 184/186 (98%)
Frame = -2 / -2
Query: 599 EYIFYLWNFPAHKVLKSSLM*RN*SMQLQCHARTYRDLQTF*CNIHSLTYGCEIFTYRSH 420
EYIFYL NFP+HKVL+SSLM*RN*S+QLQCHARTYRDL TF*CNIHSLTYGCEIFTYRSH
Sbjct: 560 EYIFYL*NFPSHKVLESSLM*RN*SIQLQCHARTYRDLHTF*CNIHSLTYGCEIFTYRSH 381
Query: 419 IYL*RRIASFSQGFMFPL*CTTAALSIRRSSMSTSYPRPKTCHLRSRGSIRP*NVKRPAG 240
IYL*RRIASFSQGFMFPL*CTTAALSI+RSSMSTSYPRPKTCHLRSRGSIRP*NVKRPAG
Sbjct: 380 IYL*RRIASFSQGFMFPL*CTTAALSIKRSSMSTSYPRPKTCHLRSRGSIRP*NVKRPAG 201
Query: 239 RVPVLQSNRSEFCSCQ**YNDVAFAFLQAIKSKMFIPKAHPQVCGSILELIVGCEKFRYL 60
RVPVLQSNRSEFCSCQ**YNDVAF+FLQAIKSKMFIPKAHPQVCGSILEL+VGCEKFRYL
Sbjct: 200 RVPVLQSNRSEFCSCQ**YNDVAFSFLQAIKSKMFIPKAHPQVCGSILELMVGCEKFRYL 21
Query: 59 *YR*ND 42
*YR*ND
Sbjct: 20 *YR*ND 3
Score = 390 bits (845), Expect = e-107
Identities = 171/187 (91%), Positives = 176/187 (94%)
Frame = -1 / -1
Query: 600 *VYILPLELSGT*GAQKQPHVKKLKHAASVPCKNIQRFADFLMQHTLSNIRV*DIHIPFP 421
*VYILPL+LS T*GA+KQPHVKKLKH AS+PCKNIQRFA FLMQHTLSNIRV*DIHIP P
Sbjct: 561 *VYILPLKLSLT*GARKQPHVKKLKHPASMPCKNIQRFAYFLMQHTLSNIRV*DIHIPLP 382
Query: 420 YILVTANSQLQPGFHVSIIVHNSSTLNQTIIYVYIIPETQDMPSAV*GLHQAIKCQKACR 241
YILVTAN QLQPGFHV IIVHNSSTLNQTIIYVYIIP+TQDMPSAV*GLHQAIKCQK CR
Sbjct: 381 YILVTANCQLQPGFHVPIIVHNSSTLNQTIIYVYIIPKTQDMPSAV*GLHQAIKCQKTCR 202
Query: 240 KSSCSPEQ*VRILLLPIMIQ*CGVCLPPSYQVKNVHSKSPSTSMWINLGADSRMRKI*IL 61
KSSCSPEQ*VRILLLPIMIQ* GV LPPSYQVKNVHSKSPSTSMWINLGAD +RKI*IL
Sbjct: 201 KSSCSPEQ*VRILLLPIMIQ*RGVFLPPSYQVKNVHSKSPSTSMWINLGADGWVRKI*IL 22
Query: 60 VIPMKRL 40
VIPMKRL
Sbjct: 21 VIPMKRL 1
Score = 386 bits (837), Expect = e-106
Identities = 162/186 (87%), Positives = 164/186 (88%)
Frame = -3 / -3
Query: 598 SIYSTSGTFRHIRCSKAASCEETEACSFSAMQEHTEICRLSNATYTL*HTGVRYSHTVPI 419
SIYSTS TF HIRCSKAASCEETEA SF+AMQEHTEIC LSNATYTL*HTGVRYSHT PI
Sbjct: 559 SIYSTSETFPHIRCSKAASCEETEASSFNAMQEHTEICILSNATYTL*HTGVRYSHTAPI 380
Query: 418 YTCNGE*PASARVSCFHYSAXXXXXXXXXHLCLHHTRDPRHAICGLGAPSGHKMSKGLQE 239
YTCNGE PASARVSC HYSA HLCLHHT+DPRHAICGLGAPSGHKMSK LQE
Sbjct: 379 YTCNGELPASARVSCSHYSAQQQHSQSNDHLCLHHTQDPRHAICGLGAPSGHKMSKDLQE 200
Query: 238 EFLFSRAIGQNFALANNDTMMWRLPSSKLSSQKCSFQKPIHKYVDQSWS***DAKNLDTC 59
EFLFSRAIGQNFALANNDTM WR PSSKLSSQKCSFQKPIHKYVDQSWS* AKNLDTC
Sbjct: 199 EFLFSRAIGQNFALANNDTMTWRFPSSKLSSQKCSFQKPIHKYVDQSWS*WLGAKNLDTC 20
Query: 58 DTDETT 41
DTDETT
Sbjct: 19 DTDETT 2
Score = 385 bits (834), Expect = e-106
Identities = 162/177 (91%), Positives = 166/177 (93%)
Frame = +3 / +3
Query: 69 KFFASYYQLQD*STYLWMGFWNEHF*LDSLEEGKRHIIVSLLARAKF*PIALENRNSSCR 248
KFFA +QLQD*STYLWMGFWNEHF*LDSLEEGKRH+IVSLLARAKF*PIALENRNSSCR
Sbjct: 30 KFFAPNHQLQD*STYLWMGFWNEHF*LDSLEEGKRHVIVSLLARAKF*PIALENRNSSCR 209
Query: 249 PFDILWPDGAPRPQMACLGSRV*CRHR*SSD*ECCCCAL*WKHETLAEAGYSPLQVYMGT 428
FDILWPDGAPRPQMACLGS V*CRHR*S D*ECCCCAL*W+HETLAEAG SPLQVYMG
Sbjct: 210 SFDILWPDGAPRPQMACLGSWV*CRHR*SFD*ECCCCAL*WEHETLAEAGNSPLQVYMGA 389
Query: 429 VCEYLTPVC*RVYVALESLQISVCSCMALKLHASVSSHEAAFEHLMCRKVPEVEYIL 599
VCEYLTPVC*RVYVALES+QISVCSCMALKL ASVSSHEAAFEHLM KV EVEYIL
Sbjct: 390 VCEYLTPVC*RVYVALESMQISVCSCMALKLDASVSSHEAAFEHLM*GKVSEVEYIL 560
Score = 381 bits (827), Expect = e-105
Identities = 170/186 (91%), Positives = 172/186 (92%)
Frame = +2 / +2
Query: 41 SRFIGITSI*IFRILLSAPRLIHILVDGLLE*TFLT**LGGRQTPHHCIIIGKSKILTYC 220
SRFIGITSI*IFR SAPRLIHILVDGLLE*TFLT**LGGR+TP HCIIIGKSKILTYC
Sbjct: 2 SRFIGITSI*IFRTQPSAPRLIHILVDGLLE*TFLT**LGGRKTPRHCIIIGKSKILTYC 181
Query: 221 SGEQELFLQAF*HFMA*WSP*TADGMSWVSGMM*T*MIV*LRVLLLCTIMET*NPG*SWL 400
SGEQELFLQ F*HFMA*WSP*TADGMSWV GMM*T*MIV*LRVLLLCTIM T*NPG*SW
Sbjct: 182 SGEQELFLQVF*HFMA*WSP*TADGMSWVLGMM*T*MIV*LRVLLLCTIMGT*NPG*SWQ 361
Query: 401 FAVTSIYGNGM*ISHTRMLESVCCIRKSANLCMFLHGTEAACFSFFT*GCF*APYVPESS 580
FAVTSIYG+GM*ISHTRMLESVCCIRK ANLCMFLHG EA CFSFFT*GCF APYV ES
Sbjct: 362 FAVTSIYGSGM*ISHTRMLESVCCIRKYANLCMFLHGIEAGCFSFFT*GCFRAPYVRESF 541
Query: 581 RGRIYT 598
RGRIYT
Sbjct: 542 RGRIYT 559
>gb|CD234655.1|CD234655 SS1_17_C07.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_17_C07_A012 3', mRNA sequence
Length = 683
Score = 390 bits (845), Expect = e-107
Identities = 156/160 (97%), Positives = 156/160 (97%)
Frame = +1 / +3
Query: 121 WAFGMNIFDLIAWRKANATSLYHYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHV 300
WAFGMNIFDLIAWRK NATSLYHYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHV
Sbjct: 3 WAFGMNIFDLIAWRKENATSLYHYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHV 182
Query: 301 LGLGYDVDIDDRLIESAAVVHYNGNMKPWLKLAIRRYKYIWERYVNISHPYVRECMLH*K 480
LGLGYDVDIDDRLIESAAVVHYNGNMKPWLKLAIRRYKYIWERYVNISHPYVRECMLH*K
Sbjct: 183 LGLGYDVDIDDRLIESAAVVHYNGNMKPWLKLAIRRYKYIWERYVNISHPYVRECMLH*K 362
Query: 481 VCKSLYVLAWH*SCMLQFLHMRLLLSTLCAGKFQR*NIYS 600
VCKSLYVLAWH*S MLQFLHMRLL STLC GKFQR*NIYS
Sbjct: 363 VCKSLYVLAWH*SWMLQFLHMRLLSSTLCEGKFQR*NIYS 482
Score = 362 bits (784), Expect = 3e-099
Identities = 153/160 (95%), Positives = 158/160 (98%)
Frame = -2 / -2
Query: 599 EYIFYLWNFPAHKVLKSSLM*RN*SMQLQCHARTYRDLQTF*CNIHSLTYGCEIFTYRSH 420
EYIFYL NFP+HKVL+SSLM*RN*S+QLQCHARTYRDL TF*CNIHSLTYGCEIFTYRSH
Sbjct: 481 EYIFYL*NFPSHKVLESSLM*RN*SIQLQCHARTYRDLHTF*CNIHSLTYGCEIFTYRSH 302
Query: 419 IYL*RRIASFSQGFMFPL*CTTAALSIRRSSMSTSYPRPKTCHLRSRGSIRP*NVKRPAG 240
IYL*RRIASFSQGFMFPL*CTTAALSI+RSSMSTSYPRPKTCHLRSRGSIRP*NVKRPAG
Sbjct: 301 IYL*RRIASFSQGFMFPL*CTTAALSIKRSSMSTSYPRPKTCHLRSRGSIRP*NVKRPAG 122
Query: 239 RVPVLQSNRSEFCSCQ**YNDVAFAFLQAIKSKMFIPKAH 120
RVPVLQSNRSEFCSCQ**YNDVAF+FLQAIKSKMFIPKAH
Sbjct: 121 RVPVLQSNRSEFCSCQ**YNDVAFSFLQAIKSKMFIPKAH 2
Score = 352 bits (762), Expect = 4e-096
Identities = 148/160 (92%), Positives = 151/160 (94%)
Frame = +3 / +2
Query: 120 MGFWNEHF*LDSLEEGKRHIIVSLLARAKF*PIALENRNSSCRPFDILWPDGAPRPQMAC 299
MGFWNEHF*LDSLEEGKRH+IVSLLARAKF*PIALENRNSSCR FDILWPDGAPRPQMAC
Sbjct: 2 MGFWNEHF*LDSLEEGKRHVIVSLLARAKF*PIALENRNSSCRSFDILWPDGAPRPQMAC 181
Query: 300 LGSRV*CRHR*SSD*ECCCCAL*WKHETLAEAGYSPLQVYMGTVCEYLTPVC*RVYVALE 479
LGS V*CRHR*S D*ECCCCAL*W+HETLAEAG SPLQVYMG VCEYLTPVC*RVYVALE
Sbjct: 182 LGSWV*CRHR*SFD*ECCCCAL*WEHETLAEAGNSPLQVYMGAVCEYLTPVC*RVYVALE 361
Query: 480 SLQISVCSCMALKLHASVSSHEAAFEHLMCRKVPEVEYIL 599
S+QISVCSCMALKL ASVSSHEAAFEHLM KV EVEYIL
Sbjct: 362 SMQISVCSCMALKLDASVSSHEAAFEHLM*GKVSEVEYIL 481
Score = 337 bits (731), Expect = 7e-092
Identities = 147/160 (91%), Positives = 151/160 (94%)
Frame = -1 / -1
Query: 600 *VYILPLELSGT*GAQKQPHVKKLKHAASVPCKNIQRFADFLMQHTLSNIRV*DIHIPFP 421
*VYILPL+LS T*GA+KQPHVKKLKH AS+PCKNIQRFA FLMQHTLSNIRV*DIHIP P
Sbjct: 482 *VYILPLKLSLT*GARKQPHVKKLKHPASMPCKNIQRFAYFLMQHTLSNIRV*DIHIPLP 303
Query: 420 YILVTANSQLQPGFHVSIIVHNSSTLNQTIIYVYIIPETQDMPSAV*GLHQAIKCQKACR 241
YILVTAN QLQPGFHV IIVHNSSTLNQTIIYVYIIP+TQDMPSAV*GLHQAIKCQK CR
Sbjct: 302 YILVTANCQLQPGFHVPIIVHNSSTLNQTIIYVYIIPKTQDMPSAV*GLHQAIKCQKTCR 123
Query: 240 KSSCSPEQ*VRILLLPIMIQ*CGVCLPPSYQVKNVHSKSP 121
KSSCSPEQ*VRILLLPIMIQ* GV LPPSYQVKNVHSKSP
Sbjct: 122 KSSCSPEQ*VRILLLPIMIQ*RGVFLPPSYQVKNVHSKSP 3
Score = 336 bits (727), Expect = 2e-091
Identities = 147/160 (91%), Positives = 149/160 (93%)
Frame = +2 / +1
Query: 119 DGLLE*TFLT**LGGRQTPHHCIIIGKSKILTYCSGEQELFLQAF*HFMA*WSP*TADGM 298
DGLLE*TFLT**LGGR+TP HCIIIGKSKILTYCSGEQELFLQ F*HFMA*WSP*TADGM
Sbjct: 1 DGLLE*TFLT**LGGRKTPRHCIIIGKSKILTYCSGEQELFLQVF*HFMA*WSP*TADGM 180
Query: 299 SWVSGMM*T*MIV*LRVLLLCTIMET*NPG*SWLFAVTSIYGNGM*ISHTRMLESVCCIR 478
SWV GMM*T*MIV*LRVLLLCTIM T*NPG*SW FAVTSIYG+GM*ISHTRMLESVCCIR
Sbjct: 181 SWVLGMM*T*MIV*LRVLLLCTIMGT*NPG*SWQFAVTSIYGSGM*ISHTRMLESVCCIR 360
Query: 479 KSANLCMFLHGTEAACFSFFT*GCF*APYVPESSRGRIYT 598
K ANLCMFLHG EA CFSFFT*GCF APYV ES RGRIYT
Sbjct: 361 KYANLCMFLHGIEAGCFSFFT*GCFRAPYVRESFRGRIYT 480
Score = 332 bits (720), Expect = 2e-090
Identities = 139/160 (86%), Positives = 141/160 (88%)
Frame = -3 / -3
Query: 598 SIYSTSGTFRHIRCSKAASCEETEACSFSAMQEHTEICRLSNATYTL*HTGVRYSHTVPI 419
SIYSTS TF HIRCSKAASCEETEA SF+AMQEHTEIC LSNATYTL*HTGVRYSHT PI
Sbjct: 480 SIYSTSETFPHIRCSKAASCEETEASSFNAMQEHTEICILSNATYTL*HTGVRYSHTAPI 301
Query: 418 YTCNGE*PASARVSCFHYSAXXXXXXXXXHLCLHHTRDPRHAICGLGAPSGHKMSKGLQE 239
YTCNGE PASARVSC HYSA HLCLHHT+DPRHAICGLGAPSGHKMSK LQE
Sbjct: 300 YTCNGELPASARVSCSHYSAQQQHSQSNDHLCLHHTQDPRHAICGLGAPSGHKMSKDLQE 121
Query: 238 EFLFSRAIGQNFALANNDTMMWRLPSSKLSSQKCSFQKPI 119
EFLFSRAIGQNFALANNDTM WR PSSKLSSQKCSFQKPI
Sbjct: 120 EFLFSRAIGQNFALANNDTMTWRFPSSKLSSQKCSFQKPI 1
>gb|CN149194.1|CN149194 WOUND1_61_F10.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_61_F10_A002 3', mRNA sequence
Length = 807
Score = 244 bits (527), Expect = 1e-063
Identities = 85/153 (55%), Positives = 112/153 (73%)
Frame = +1 / +2
Query: 7 GNVIGAVETCLESFHRYHKYLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLY 186
G V GAVETC SFHRY +Y+NFSHP I +K +P+ CGWA+GMN FDL +WR+ T Y
Sbjct: 77 GKVNGAVETCFGSFHRYAQYMNFSHPLIKAKFNPNACGWAYGMNFFDLDSWRREKCTEQY 256
Query: 187 HYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHY 366
HYWQ QN + LW+ GTLP GL+TFY +PL+R WHVLGLGY+ I I +AAVVH+
Sbjct: 257 HYWQNQNENRTLWKLGTLPPGLITFYSTTKPLERSWHVLGLGYNPSISMEEIRNAAVVHF 436
Query: 367 NGNMKPWLKLAIRRYKYIWERYVNISHPYVREC 465
NGNMKPWL + + +++++W +YV+ Y+R+C
Sbjct: 437 NGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQC 535
Score = 134 bits (288), Expect = 9e-031
Identities = 67/128 (52%), Positives = 73/128 (57%)
Frame = -2 / -1
Query: 389 SQGFMFPL*CTTAALSIRRSSMSTSYPRPKTCHLRSRGSIRP*NVKRPAGRVPVLQSNRS 210
SQGFM PL CTTAA I M YP P+TC SRG + * V +P G VP + R
Sbjct: 459 SQGFMLPLKCTTAAFLISSMLMLGLYPSPRTCQDLSRGFVVE*KVIKPGGSVPSFHNVRF 280
Query: 209 EFCSCQ**YNDVAFAFLQAIKSKMFIPKAHPQVCGSILELIVGCEKFRYL*YR*NDSKQV 30
F CQ* Y V F+ LQ +SK FIP A PQ G LI GCEKF Y YR* D K V
Sbjct: 279 SF*FCQ*WYCSVHFSLLQESRSKKFIPYAQPQALGLNFALIRGCEKFIYCAYR*KDPKHV 100
Query: 29 STAPMTLP 6
STAP T P
Sbjct: 99 STAPFTFP 76
>gb|CD431168.1|CD431168 ETH1_7_B07.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_7_B07_A002 3', mRNA sequence
Length = 496
Score = 230 bits (497), Expect = 1e-059
Identities = 94/97 (96%), Positives = 94/97 (96%)
Frame = +1 / +2
Query: 310 GYDVDIDDRLIESAAVVHYNGNMKPWLKLAIRRYKYIWERYVNISHPYVRECMLH*KVCK 489
GYDVDIDDRLIESAAVVHYNGNMKPWLKLAIRRYKYIWERYVNISHPYVRECMLH*KVCK
Sbjct: 2 GYDVDIDDRLIESAAVVHYNGNMKPWLKLAIRRYKYIWERYVNISHPYVRECMLH*KVCK 181
Query: 490 SLYVLAWH*SCMLQFLHMRLLLSTLCAGKFQR*NIYS 600
SLYVLAWH*S MLQFLHMRLL STLC GKFQR*NIYS
Sbjct: 182 SLYVLAWH*SWMLQFLHMRLLSSTLCEGKFQR*NIYS 292
Score = 215 bits (465), Expect = 3e-055
Identities = 91/97 (93%), Positives = 95/97 (97%)
Frame = -2 / -2
Query: 599 EYIFYLWNFPAHKVLKSSLM*RN*SMQLQCHARTYRDLQTF*CNIHSLTYGCEIFTYRSH 420
EYIFYL NFP+HKVL+SSLM*RN*S+QLQCHARTYRDL TF*CNIHSLTYGCEIFTYRSH
Sbjct: 291 EYIFYL*NFPSHKVLESSLM*RN*SIQLQCHARTYRDLHTF*CNIHSLTYGCEIFTYRSH 112
Query: 419 IYL*RRIASFSQGFMFPL*CTTAALSIRRSSMSTSYP 309
IYL*RRIASFSQGFMFPL*CTTAALSI+RSSMSTSYP
Sbjct: 111 IYL*RRIASFSQGFMFPL*CTTAALSIKRSSMSTSYP 1
Score = 203 bits (438), Expect = 2e-051
Identities = 87/97 (89%), Positives = 91/97 (93%)
Frame = -1 / -1
Query: 600 *VYILPLELSGT*GAQKQPHVKKLKHAASVPCKNIQRFADFLMQHTLSNIRV*DIHIPFP 421
*VYILPL+LS T*GA+KQPHVKKLKH AS+PCKNIQRFA FLMQHTLSNIRV*DIHIP P
Sbjct: 292 *VYILPLKLSLT*GARKQPHVKKLKHPASMPCKNIQRFAYFLMQHTLSNIRV*DIHIPLP 113
Query: 420 YILVTANSQLQPGFHVSIIVHNSSTLNQTIIYVYIIP 310
YILVTAN QLQPGFHV IIVHNSSTLNQTI+YVYIIP
Sbjct: 112 YILVTANCQLQPGFHVPIIVHNSSTLNQTIVYVYIIP 2
Score = 201 bits (434), Expect = 6e-051
Identities = 86/96 (89%), Positives = 88/96 (91%)
Frame = +3 / +1
Query: 312 V*CRHR*SSD*ECCCCAL*WKHETLAEAGYSPLQVYMGTVCEYLTPVC*RVYVALESLQI 491
V*CRHR S D*ECCCCAL*W+HETLAEAG SPLQVYMG VCEYLTPVC*RVYVALES+QI
Sbjct: 4 V*CRHRRSFD*ECCCCAL*WEHETLAEAGNSPLQVYMGAVCEYLTPVC*RVYVALESMQI 183
Query: 492 SVCSCMALKLHASVSSHEAAFEHLMCRKVPEVEYIL 599
SVCSCMALKL ASVSSHEAAFEHLM KV EVEYIL
Sbjct: 184 SVCSCMALKLDASVSSHEAAFEHLM*GKVSEVEYIL 291
Score = 195 bits (420), Expect = 5e-049
Identities = 86/96 (89%), Positives = 87/96 (90%)
Frame = +2 / +3
Query: 311 GMM*T*MIV*LRVLLLCTIMET*NPG*SWLFAVTSIYGNGM*ISHTRMLESVCCIRKSAN 490
GMM*T* IV*LRVLLLCTIM T*NPG*SW FAVTSIYG+GM*ISHTRMLESVCCIRK AN
Sbjct: 3 GMM*T*TIV*LRVLLLCTIMGT*NPG*SWQFAVTSIYGSGM*ISHTRMLESVCCIRKYAN 182
Query: 491 LCMFLHGTEAACFSFFT*GCF*APYVPESSRGRIYT 598
LCMFLHG EA CFSFFT*GCF APYV ES RGRIYT
Sbjct: 183 LCMFLHGIEAGCFSFFT*GCFRAPYVRESFRGRIYT 290
Score = 186 bits (401), Expect = 2e-046
Identities = 78/96 (81%), Positives = 79/96 (82%)
Frame = -3 / -3
Query: 598 SIYSTSGTFRHIRCSKAASCEETEACSFSAMQEHTEICRLSNATYTL*HTGVRYSHTVPI 419
SIYSTS TF HIRCSKAASCEETEA SF+AMQEHTEIC LSNATYTL*HTGVRYSHT PI
Sbjct: 290 SIYSTSETFPHIRCSKAASCEETEASSFNAMQEHTEICILSNATYTL*HTGVRYSHTAPI 111
Query: 418 YTCNGE*PASARVSCFHYSAXXXXXXXXXHLCLHHT 311
YTCNGE PASARVSC HYSA LCLHHT
Sbjct: 110 YTCNGELPASARVSCSHYSAQQQHSQSNDRLCLHHT 3
>gb|CN140420.1|CN140420 OX1_36_B10.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_36_B10_A002 3', mRNA sequence
Length = 836
Score = 230 bits (496), Expect = 2e-059
Identities = 80/142 (56%), Positives = 105/142 (73%)
Frame = +1 / +3
Query: 7 GNVIGAVETCLESFHRYHKYLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLY 186
G V GAVETC SFHRY +Y+NFSHP I +K +P+ CGWA+GMN FDL +WR+ T Y
Sbjct: 180 GKVNGAVETCFGSFHRYAQYMNFSHPLIKAKFNPNACGWAYGMNFFDLDSWRREKCTEQY 359
Query: 187 HYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHY 366
HYWQ QN + LW+ GTLP GL+TFY +PL++ WHVLGLGY+ I I +AAVVH+
Sbjct: 360 HYWQNQNENRTLWKLGTLPPGLITFYSTTKPLEKSWHVLGLGYNPSISMEEIRNAAVVHF 539
Query: 367 NGNMKPWLKLAIRRYKYIWERY 432
NGNMKPWL + + +++++W +Y
Sbjct: 540 NGNMKPWLDIGMNQFRHLWTKY 605
Score = 134 bits (287), Expect = 1e-030
Identities = 67/128 (52%), Positives = 73/128 (57%)
Frame = -2 / -2
Query: 389 SQGFMFPL*CTTAALSIRRSSMSTSYPRPKTCHLRSRGSIRP*NVKRPAGRVPVLQSNRS 210
SQGFM PL CTTAA I M YP P+TC SRG + * V +P G VP + R
Sbjct: 562 SQGFMLPLKCTTAAFLISSMLMLGLYPSPRTCQDFSRGFVVE*KVIKPGGSVPSFHNVRF 383
Query: 209 EFCSCQ**YNDVAFAFLQAIKSKMFIPKAHPQVCGSILELIVGCEKFRYL*YR*NDSKQV 30
F CQ* Y V F+ LQ +SK FIP A PQ G LI GCEKF Y YR* D K V
Sbjct: 382 SF*FCQ*WYCSVHFSLLQESRSKKFIPYAQPQALGLNFALIRGCEKFIYCAYR*KDPKHV 203
Query: 29 STAPMTLP 6
STAP T P
Sbjct: 202 STAPFTFP 179
>gb|CF487333.1|CF487333 POL1_43_D11.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_43_D11_A002 3', mRNA sequence
Length = 661
Score = 220 bits (474), Expect = 2e-056
Identities = 80/134 (59%), Positives = 98/134 (73%)
Frame = +1 / +2
Query: 70 NFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLYHYWQEQNSDLLLWRTGTLPAG 249
NFS+P I+ DP+ CGWA+GMNIFDL W+K + T +YH WQ N D LW+ GTLP G
Sbjct: 2 NFSNPHIARNFDPNACGWAYGMNIFDLREWKKKDITGIYHKWQNLNEDRALWKLGTLPPG 181
Query: 250 LLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHYNGNMKPWLKLAIRRYKYIWER 429
LLTFY L PLD+ WHVLGLGY+ ID I+SAAVVHYNGNMKPWL+LA+ +Y+ W +
Sbjct: 182 LLTFYKLTHPLDKSWHVLGLGYNPSIDRSEIDSAAVVHYNGNMKPWLELAMTKYRPYWTK 361
Query: 430 YVNISHPYVRECML 471
Y+ HPY+R C L
Sbjct: 362 YIKYDHPYIRGCNL 403
>gb|CW144377.1|CW144377 104_536_11137911_148_34962_056 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11137911, DNA
sequence
Length = 622
Score = 148 bits (317), Expect(2) = 2e-052
Identities = 55/89 (61%), Positives = 66/89 (74%)
Frame = +1 / +2
Query: 205 NSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHYNGNMKP 384
N D LW+ GTLP GLLTFY L PLD+ WHVLGLGY+ ID I+SAAVVHYNGNMKP
Sbjct: 278 NEDRALWKLGTLPPGLLTFYKLTHPLDKSWHVLGLGYNPSIDRSEIDSAAVVHYNGNMKP 457
Query: 385 WLKLAIRRYKYIWERYVNISHPYVRECML 471
WL+LA+ +Y+ W +Y+ HPY+R C L
Sbjct: 458 WLELAMTKYRPYWTKYIKYDHPYIRGCNL 544
Score = 80.8 bits (170), Expect(2) = 2e-052
Identities = 27/45 (60%), Positives = 34/45 (75%)
Frame = +1 / +2
Query: 64 YLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLYHYWQ 198
YLNFS+P I+ DP+ CGWA+GMNIFDL W+K + T +YH WQ
Sbjct: 2 YLNFSNPHIARNFDPNACGWAYGMNIFDLREWKKKDITGIYHKWQ 136
>gb|CF070980.1|CF070980 FE1_14_F12.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_14_F12_A002 5', mRNA sequence
Length = 692
Score = 188 bits (405), Expect = 6e-047
Identities = 64/126 (50%), Positives = 90/126 (71%)
Frame = +1 / -1
Query: 88 ISSKIDPHTCGWAFGMNIFDLIAWRKANATSLYHYWQEQNSDLLLWRTGTLPAGLLTFYG 267
I +K +P+ CG A+GMN FDL +WR+ T YHYWQ QN + LW+ GTLP GL+TFY
Sbjct: 692 IKAKFNPNACGGAYGMNFFDLDSWRREKCTEQYHYWQNQNENRTLWKLGTLPPGLITFYS 513
Query: 268 LMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHYNGNMKPWLKLAIRRYKYIWERYVNISH 447
+PL++ WHVLGLGY+ I I +AAVVH+NGNMKPWL + + +++++W +YV+
Sbjct: 512 TTKPLEKSWHVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGMNQFRHLWTKYVDYDD 333
Query: 448 PYVREC 465
Y+R+C
Sbjct: 332 SYIRQC 315
>gb|BF587532.1|BF587532 FM1_37_E11.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 632
Score = 174 bits (374), Expect = 1e-042
Identities = 59/114 (51%), Positives = 82/114 (71%)
Frame = +1 / +1
Query: 124 AFGMNIFDLIAWRKANATSLYHYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVL 303
A+GMN FDL +WR+ T YHYWQ QN + LW+ GTLP GL+TFY +PL++ WHVL
Sbjct: 1 AYGMNFFDLDSWRREKCTEQYHYWQNQNENRTLWKLGTLPXGLITFYSTTKPLEKSWHVL 180
Query: 304 GLGYDVDIDDRLIESAAVVHYNGNMKPWLKLAIRRYKYIWERYVNISHPYVREC 465
GLGY+ I I +AAVVH+NGNMKPWL + + +++++W +YV+ Y+R+C
Sbjct: 181 GLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQC 342
>gb|BI139893.1|BI139893 IP1_47_A12.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 598
Score = 104 bits (222), Expect(2) = 1e-042
Identities = 39/86 (45%), Positives = 52/86 (60%)
Frame = +1 / +2
Query: 208 SDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHYNGNMKPW 387
S L LW+ GTLP L+ F G + +D WH+LGLGY D + AAV+HYNG KPW
Sbjct: 296 SGLTLWKFGTLPPALIAFRGHVHGIDPSWHLLGLGYQDKTDIESVRRAAVIHYNGQCKPW 475
Query: 388 LKLAIRRYKYIWERYVNISHPYVREC 465
L +A + + W ++VN S +VR C
Sbjct: 476 LDIAFKNLQPFWTKHVNYSXDFVRNC 553
Score = 89.5 bits (189), Expect(2) = 1e-042
Identities = 29/52 (55%), Positives = 36/52 (69%)
Frame = +1 / +2
Query: 52 RYHKYLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLYHYWQEQN 207
R+ Y NFSHP I+ +DP C WA+GMNIFDL AWRK N YH+W ++N
Sbjct: 134 RFRTYFNFSHPVIARSLDPDECAWAYGMNIFDLAAWRKTNIRDTYHFWLKEN 289
>gb|BG101797.1|BG101797 RHIZ2_22_E09.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 591
Score = 170 bits (366), Expect = 2e-041
Identities = 59/110 (53%), Positives = 79/110 (71%)
Frame = +1 / +3
Query: 142 FDLIAWRKANATSLYHYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDV 321
FDL W+ + T +YH WQ N + LLW+ GTLP GLLTFY L PLD+ WHVLGLGY+
Sbjct: 3 FDLEEWKNKDITGIYHKWQNMNENRLLWKLGTLPPGLLTFYKLTHPLDKSWHVLGLGYNP 182
Query: 322 DIDDRLIESAAVVHYNGNMKPWLKLAIRRYKYIWERYVNISHPYVRECML 471
I+ I++AAV+HYNGNMKPWL++A+ +Y+ W +Y+N HPY+ C +
Sbjct: 183 TIERSEIDNAAVIHYNGNMKPWLEIAMTKYRPYWTKYINYEHPYIHGCKI 332
>gb|CW306008.1|CW306008 104_791_11466607_148_36273_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11466607, DNA
sequence
Length = 675
Score = 110 bits (234), Expect(2) = 5e-041
Identities = 39/70 (55%), Positives = 52/70 (74%)
Frame = +1 / -1
Query: 229 TGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHYNGNMKPWLKLAIRR 408
T LP GL+TFYG +PLD+ WHV+GLGY+ I I AAV+H+NGNMKPWL +A +
Sbjct: 261 TSVLPVGLMTFYGKTKPLDKSWHVMGLGYNPHIRPEDIGGAAVIHFNGNMKPWLDVAFNQ 82
Query: 409 YKYIWERYVN 438
YK++W +YV+
Sbjct: 81 YKHLWTKYVD 52
Score = 80.3 bits (169), Expect(2) = 5e-041
Identities = 28/67 (41%), Positives = 37/67 (55%)
Frame = +1 / -3
Query: 10 NVIGAVETCLESFHRYHKYLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLYH 189
NV A+ TC F RY KYLNFS P + C W++G+N+FDL WR+ T +H
Sbjct: 592 NVNAALHTCFGGFRRYGKYLNFSEPVVQESFSHRACAWSYGVNVFDLQGWRREQCTQQFH 413
Query: 190 YWQEQNS 210
+ E S
Sbjct: 412 RFMEMVS 392
>gb|BE367359.1|BE367359 PI1_4_C05.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 630
Score = 162 bits (349), Expect = 3e-039
Identities = 67/70 (95%), Positives = 67/70 (95%)
Frame = +1 / +1
Query: 391 KLAIRRYKYIWERYVNISHPYVRECMLH*KVCKSLYVLAWH*SCMLQFLHMRLLLSTLCA 570
KLAIRRYKYIWERYVNISHPYVRECMLH*KVCKSLYVLAWH*S MLQFLHMRLL STLC
Sbjct: 1 KLAIRRYKYIWERYVNISHPYVRECMLH*KVCKSLYVLAWH*SWMLQFLHMRLLSSTLCE 180
Query: 571 GKFQR*NIYS 600
GKFQR*NIYS
Sbjct: 181 GKFQR*NIYS 210
Score = 153 bits (329), Expect = 2e-036
Identities = 64/69 (92%), Positives = 67/69 (97%)
Frame = -2 / -2
Query: 599 EYIFYLWNFPAHKVLKSSLM*RN*SMQLQCHARTYRDLQTF*CNIHSLTYGCEIFTYRSH 420
EYIFYL NFP+HKVL+SSLM*RN*S+QLQCHARTYRDL TF*CNIHSLTYGCEIFTYRSH
Sbjct: 209 EYIFYL*NFPSHKVLESSLM*RN*SIQLQCHARTYRDLHTF*CNIHSLTYGCEIFTYRSH 30
Query: 419 IYL*RRIAS 393
IYL*RRIAS
Sbjct: 29 IYL*RRIAS 3
Score = 149 bits (320), Expect = 3e-035
Identities = 62/69 (89%), Positives = 63/69 (91%)
Frame = -3 / -3
Query: 598 SIYSTSGTFRHIRCSKAASCEETEACSFSAMQEHTEICRLSNATYTL*HTGVRYSHTVPI 419
SIYSTS TF HIRCSKAASCEETEA SF+AMQEHTEIC LSNATYTL*HTGVRYSHT PI
Sbjct: 208 SIYSTSETFPHIRCSKAASCEETEASSFNAMQEHTEICILSNATYTL*HTGVRYSHTAPI 29
Query: 418 YTCNGE*PA 392
YTCNGE PA
Sbjct: 28 YTCNGELPA 2
Score = 148 bits (317), Expect = 9e-035
Identities = 61/69 (88%), Positives = 62/69 (89%)
Frame = +2 / +2
Query: 392 SWLFAVTSIYGNGM*ISHTRMLESVCCIRKSANLCMFLHGTEAACFSFFT*GCF*APYVP 571
SW FAVTSIYG+GM*ISHTRMLESVCCIRK ANLCMFLHG EA CFSFFT*GCF APYV
Sbjct: 2 SWQFAVTSIYGSGM*ISHTRMLESVCCIRKYANLCMFLHGIEAGCFSFFT*GCFRAPYVR 181
Query: 572 ESSRGRIYT 598
ES RGRIYT
Sbjct: 182 ESFRGRIYT 208
Score = 142 bits (304), Expect = 5e-033
Identities = 62/70 (88%), Positives = 65/70 (92%)
Frame = -1 / -1
Query: 600 *VYILPLELSGT*GAQKQPHVKKLKHAASVPCKNIQRFADFLMQHTLSNIRV*DIHIPFP 421
*VYILPL+LS T*GA+KQPHVKKLKH AS+PCKNIQRFA FLMQHTLSNIRV*DIHIP P
Sbjct: 210 *VYILPLKLSLT*GARKQPHVKKLKHPASMPCKNIQRFAYFLMQHTLSNIRV*DIHIPLP 31
Query: 420 YILVTANSQL 391
YILVTAN QL
Sbjct: 30 YILVTANCQL 1
Score = 142 bits (304), Expect = 5e-033
Identities = 62/69 (89%), Positives = 63/69 (91%)
Frame = +3 / +3
Query: 393 AGYSPLQVYMGTVCEYLTPVC*RVYVALESLQISVCSCMALKLHASVSSHEAAFEHLMCR 572
AG SPLQVYMG VCEYLTPVC*RVYVALES+QISVCSCMALKL ASVSSHEAAFEHLM
Sbjct: 3 AGNSPLQVYMGAVCEYLTPVC*RVYVALESMQISVCSCMALKLDASVSSHEAAFEHLM*G 182
Query: 573 KVPEVEYIL 599
KV EVEYIL
Sbjct: 183 KVSEVEYIL 209
>gb|BM331533.1|BM331533 PIC1_72_D10.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 596
Score = 155 bits (333), Expect = 5e-037
Identities = 56/95 (58%), Positives = 71/95 (74%)
Frame = +1 / +2
Query: 181 LYHYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVV 360
+YHYWQ+ N D LW+ GTLP GL+TFY L PL+R WHVLGLGYD +D I++AAVV
Sbjct: 2 IYHYWQDLNEDRKLWKLGTLPPGLITFYNLTYPLNRTWHVLGLGYDPAVDIAEIDNAAVV 181
Query: 361 HYNGNMKPWLKLAIRRYKYIWERYVNISHPYVREC 465
HYNGN KPWL LAI +YK W +YV++ + +V+ C
Sbjct: 182 HYNGNYKPWLDLAISKYKTYWSKYVDVDNSHVQHC 286
>gb|CW031244.1|CW031244 104_259_10500694_114_30397 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10500694, DNA
sequence
Length = 776
Score = 144 bits (309), Expect = 1e-033
Identities = 49/73 (67%), Positives = 58/73 (79%)
Frame = +1 / +3
Query: 7 GNVIGAVETCLESFHRYHKYLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLY 186
GNV+GAVETC+E+FHR+HKYLN SHP I + DP CGWAFGMN+ DL+ WR N T +Y
Sbjct: 558 GNVMGAVETCMETFHRFHKYLNHSHPLIRAHFDPDACGWAFGMNVLDLVEWRNKNVTGIY 737
Query: 187 HYWQEQNSDLLLW 225
HYWQE+NSD LW
Sbjct: 738 HYWQERNSDHTLW 776
>gb|CW285991.1|CW285991 104_763_11410641_116_35511_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11410641, DNA
sequence
Length = 612
Score = 143 bits (306), Expect = 3e-033
Identities = 50/89 (56%), Positives = 67/89 (75%)
Frame = +1 / +2
Query: 205 NSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHYNGNMKP 384
N + LLW+ GTLP GLLTFY L PLD+ WHVLGLGY+ I+ I++AAV+HYNGNMKP
Sbjct: 62 NENRLLWKLGTLPPGLLTFYKLTHPLDKSWHVLGLGYNPTIERSEIDNAAVIHYNGNMKP 241
Query: 385 WLKLAIRRYKYIWERYVNISHPYVRECML 471
WL++A+ +Y+ W +Y+N HPY+ C +
Sbjct: 242 WLEIAMTKYRPYWTKYINYEHPYIHGCKI 328
>gb|CL193723.1|CL193723 104_417_10941134_116_32279_053 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10941134, DNA
sequence
Length = 686
Score = 115 bits (246), Expect(2) = 5e-031
Identities = 42/68 (61%), Positives = 50/68 (73%)
Frame = +1 / +2
Query: 7 GNVIGAVETCLESFHRYHKYLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLY 186
GNV GAVETC ESFHR+ KYLNFS+P IS DP+ CGWA+GMN+FDL W+ + T +Y
Sbjct: 5 GNVNGAVETCGESFHRFDKYLNFSNPNISQNFDPNACGWAYGMNMFDLEEWKNKDITGIY 184
Query: 187 HYWQEQNS 210
H WQ S
Sbjct: 185 HKWQNMVS 208
Score = 41.4 bits (84), Expect(2) = 5e-031
Identities = 16/26 (61%), Positives = 18/26 (69%)
Frame = +1 / +1
Query: 205 NSDLLLWRTGTLPAGLLTFYGLMEPL 282
N + LLW+ GTLP GL TFY L PL
Sbjct: 607 NENRLLWKLGTLPPGLSTFYKLTHPL 684
>gb|BM329584.1|BM329584 PIC1_40_E09.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 628
Score = 130 bits (279), Expect = 2e-029
Identities = 46/93 (49%), Positives = 66/93 (70%)
Frame = +1 / +3
Query: 196 QEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHYNGN 375
Q+ N D LW+ GTLP GL+TF+ PL R WHVLGLGY+ ++ R IE AAV+HYNGN
Sbjct: 3 QKLNEDRSLWKLGTLPPGLITFWNKTFPLSRSWHVLGLGYNPHVNSRDIERAAVIHYNGN 182
Query: 376 MKPWLKLAIRRYKYIWERYVNISHPYVRECMLH 474
MKPWL++ + +Y+ W +Y++ ++REC ++
Sbjct: 183 MKPWLEIGLPKYRSYWSKYLDYDQSFLRECNIN 281
>gb|CW381875.1|CW381875 fsbb001f063h19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f063h19, DNA
sequence
Length = 722
Score = 124 bits (266), Expect = 1e-027
Identities = 42/85 (49%), Positives = 62/85 (72%)
Frame = +1 / +2
Query: 220 LWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHYNGNMKPWLKLA 399
LW+ G+LP G LTFY PLD RWHV GLG+D I +ESA+V+HY+G +KPWL+++
Sbjct: 77 LWKPGSLPLGQLTFYNRTLPLDHRWHVFGLGHDFSIGRNELESASVIHYSGKLKPWLEIS 256
Query: 400 IRRYKYIWERYVNISHPYVRECMLH 474
I +Y+ W RY+N +P++++C +H
Sbjct: 257 IPKYRDYWNRYLNYDNPHLQQCNIH 331
>gb|CW285992.1|CW285992 104_763_11410641_148_35507_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11410641, DNA
sequence
Length = 694
Score = 112 bits (240), Expect = 4e-024
Identities = 38/72 (52%), Positives = 53/72 (73%)
Frame = +1 / -1
Query: 256 TFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHYNGNMKPWLKLAIRRYKYIWERYV 435
TFY L PLD+ WHVLGLGY+ + I++AAV+HYNGNMKPWL++A+ +Y+ W +Y+
Sbjct: 694 TFYKLTHPLDKSWHVLGLGYNPTMXRSEIDNAAVIHYNGNMKPWLEIAMTKYRPYWTKYI 515
Query: 436 NISHPYVRECML 471
N HPY+ C +
Sbjct: 514 NYEHPYIHGCKI 479
>gb|CL158360.1|CL158360 104_347_10803488_114_31377_080 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10803488, DNA
sequence
Length = 727
Score = 110 bits (234), Expect = 2e-023
Identities = 39/79 (49%), Positives = 56/79 (70%)
Frame = +1 / +2
Query: 229 TGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHYNGNMKPWLKLAIRR 408
T L AGL++FYG +PLD+ WHV+GLGY+ I I SAAV+H++GNMKPWL +A+ +
Sbjct: 461 TSILTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAVIHFDGNMKPWLDVALNQ 640
Query: 409 YKYIWERYVNISHPYVREC 465
YK +W +YV+ ++ C
Sbjct: 641 YKALWTKYVDTEMEFLTLC 697
>gb|CL158361.1|CL158361 104_347_10803488_116_31378_080 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10803488, DNA
sequence
Length = 731
Score = 110 bits (234), Expect = 2e-023
Identities = 39/79 (49%), Positives = 56/79 (70%)
Frame = +1 / -3
Query: 229 TGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHYNGNMKPWLKLAIRR 408
T L AGL++FYG +PLD+ WHV+GLGY+ I I SAAV+H++GNMKPWL +A+ +
Sbjct: 375 TSILTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAVIHFDGNMKPWLDVALNQ 196
Query: 409 YKYIWERYVNISHPYVREC 465
YK +W +YV+ ++ C
Sbjct: 195 YKALWTKYVDTEMEFLTLC 139
>gb|CD234075.1|CD234075 SS1_6_A11.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_6_A11_A012 3', mRNA sequence
Length = 590
Score = 108 bits (231), Expect = 6e-023
Identities = 46/49 (93%), Positives = 46/49 (93%)
Frame = +1 / +3
Query: 454 VRECMLH*KVCKSLYVLAWH*SCMLQFLHMRLLLSTLCAGKFQR*NIYS 600
VRECMLH*KVCKSLYVLAWH*S MLQFLHMRLL STLC GKFQR*NIYS
Sbjct: 3 VRECMLH*KVCKSLYVLAWH*SWMLQFLHMRLLSSTLCEGKFQR*NIYS 149
Score = 105 bits (225), Expect = 4e-022
Identities = 44/49 (89%), Positives = 47/49 (95%)
Frame = -2 / -2
Query: 599 EYIFYLWNFPAHKVLKSSLM*RN*SMQLQCHARTYRDLQTF*CNIHSLT 453
EYIFYL NFP+HKVL+SSLM*RN*S+QLQCHARTYRDL TF*CNIHSLT
Sbjct: 148 EYIFYL*NFPSHKVLESSLM*RN*SIQLQCHARTYRDLHTF*CNIHSLT 2
Score = 105 bits (225), Expect = 4e-022
Identities = 43/49 (87%), Positives = 43/49 (87%)
Frame = +2 / +1
Query: 452 MLESVCCIRKSANLCMFLHGTEAACFSFFT*GCF*APYVPESSRGRIYT 598
MLESVCCIRK ANLCMFLHG EA CFSFFT*GCF APYV ES RGRIYT
Sbjct: 1 MLESVCCIRKYANLCMFLHGIEAGCFSFFT*GCFRAPYVRESFRGRIYT 147
Score = 103 bits (220), Expect = 2e-021
Identities = 44/49 (89%), Positives = 45/49 (91%)
Frame = -3 / -3
Query: 598 SIYSTSGTFRHIRCSKAASCEETEACSFSAMQEHTEICRLSNATYTL*H 452
SIYSTS TF HIRCSKAASCEETEA SF+AMQEHTEIC LSNATYTL*H
Sbjct: 147 SIYSTSETFPHIRCSKAASCEETEASSFNAMQEHTEICILSNATYTL*H 1
>gb|CD210962.1|CD210962 HS1_58_B05.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_58_B05_A012 3', mRNA sequence
Length = 733
Score = 90.0 bits (190), Expect(2) = 9e-023
Identities = 37/85 (43%), Positives = 51/85 (60%)
Frame = +1 / +1
Query: 211 DLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHYNGNMKPWL 390
D L R P LL+F L+ PLD + + GLGYD ID+ + +A +HYNGNMKPWL
Sbjct: 118 DELSLRAAAFPLSLLSFQHLIYPLDEKLTLAGLGYDYGIDEVVARRSASLHYNGNMKPWL 297
Query: 391 KLAIRRYKYIWERYVNISHPYVREC 465
+L I YK W+R++ ++ EC
Sbjct: 298 ELGIPDYKKYWKRFLVRGDRFMDEC 372
Score = 37.7 bits (76), Expect(2) = 9e-023
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1 / +1
Query: 103 DPHTCGWAFGMNIFDLIAWRKANATSLY 186
DP+ C W G+N+ +L WR+ N T Y
Sbjct: 4 DPNLCAWMSGVNLINLDKWREHNVTENY 87
>gb|BI212063.1|BI212063 IP1_61_B03.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 648
Score = 90.0 bits (190), Expect(2) = 9e-023
Identities = 37/85 (43%), Positives = 51/85 (60%)
Frame = +1 / +1
Query: 211 DLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHYNGNMKPWL 390
D L R P LL+F L+ PLD + + GLGYD ID+ + +A +HYNGNMKPWL
Sbjct: 217 DELSLRAAAFPLSLLSFQHLIYPLDEKLTLAGLGYDYGIDEVVARRSASLHYNGNMKPWL 396
Query: 391 KLAIRRYKYIWERYVNISHPYVREC 465
+L I YK W+R++ ++ EC
Sbjct: 397 ELGIPDYKKYWKRFLVRGDRFMDEC 471
Score = 37.7 bits (76), Expect(2) = 9e-023
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1 / +1
Query: 103 DPHTCGWAFGMNIFDLIAWRKANATSLY 186
DP+ C W G+N+ +L WR+ N T Y
Sbjct: 103 DPNLCAWMSGVNLINLDKWREHNVTENY 186
>gb|CW451706.1|CW451706 fsbb001f191o09k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f191o09, DNA
sequence
Length = 599
Score = 52.8 bits (109), Expect(3) = 8e-021
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = +1 / -2
Query: 115 CGWAFGMNIFDLIAWRKANATSLYHYWQEQNSDLLL 222
C W++G+NI DL AWR+ N T Y +W ++ S LL+
Sbjct: 556 CAWSWGVNIVDLDAWRRTNVTETYQFWLQKASKLLV 449
Score = 47.8 bits (98), Expect(3) = 8e-021
Identities = 15/43 (34%), Positives = 29/43 (67%)
Frame = +1 / -3
Query: 337 LIESAAVVHYNGNMKPWLKLAIRRYKYIWERYVNISHPYVREC 465
L+ S+AV+H++G KPWL++A + +W ++N S +++ C
Sbjct: 186 LVRSSAVLHFSGPRKPWLEVAFPELRQLWLAHLNASDSFLQGC 58
Score = 39.6 bits (80), Expect(3) = 8e-021
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +1 / -3
Query: 196 QEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAV 357
Q + S LW+ +LP L+ G ++ ++ +W++ GLG+ V D + SA +
Sbjct: 324 QNRESGFRLWQMASLPPALIAVDGRVQAIEPQWNLPGLGWRVPHPDLVRSSAVL 163
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 825,647,015
Number of Sequences: 832831
Number of extensions: 12453002
Number of successful extensions: 99553
Number of sequences better than 1.0e-020: 33
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 17468390898
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)