TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3336981.2.1
(510 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW273637.1|CW273637 104_746_11404006_148_35367_091 Sorgh... 198 6e-050
gb|CW458366.1|CW458366 fsbb001f204j23f0 Sorghum methylation... 198 6e-050
gb|CL155898.1|CL155898 104_342_10782482_116_31474_194 Sorgh... 119 4e-045
gb|CF755910.1|CF755910 DSAF1_2_D11.b1_A011 Drought-stressed... 119 4e-045
gb|BM324567.1|BM324567 PIC1_32_H03.b1_A002 Pathogen-infecte... 173 5e-044
gb|BI074601.1|BI074601 IP1_13_E09.b1_A002 Immature pannicle... 176 3e-043
gb|CD224712.1|CD224712 CCC1_35_B01.g1_A007 Callus culture/c... 121 6e-042
gb|CW156950.1|CW156950 104_560_11146964_148_36381_078 Sorgh... 163 1e-039
gb|CW129885.1|CW129885 104_512_11114810_148_34775_013 Sorgh... 131 3e-039
gb|CW251891.1|CW251891 104_714_11224187_116_35066_036 Sorgh... 131 3e-039
gb|CW232627.1|CW232627 104_685_11212918_148_37363_089 Sorgh... 127 4e-038
gb|BH246250.1|BH246250 pSB1859.2 S. bicolor BTx623 PstI-dig... 120 4e-035
gb|CW381903.1|CW381903 fsbb001f063i11k0 Sorghum methylation... 115 1e-032
gb|CW170788.1|CW170788 104_581_11155395_116_36517_010 Sorgh... 115 1e-032
gb|CW198921.1|CW198921 104_623_11183235_116_36840_002 Sorgh... 138 8e-032
gb|CW069461.1|CW069461 104_319_10525911_1_30093 Sorghum met... 79 2e-030
gb|CW089875.1|CW089875 104_435_10948960_116_32613_056 Sorgh... 107 1e-029
gb|BI075448.1|BI075448 IP1_20_F08.b1_A002 Immature pannicle... 105 2e-029
gb|CW158295.1|CW158295 104_564_11148744_148_36397_096 Sorgh... 73 2e-027
gb|CW204521.1|CW204521 104_632_11186586_148_36923_071 Sorgh... 73 2e-027
gb|CN142497.1|CN142497 WOUND1_10_H05.b1_A002 Wounded leaves... 109 4e-023
gb|CW316863.1|CW316863 104_808_11473115_116_35851_040 Sorgh... 108 7e-023
>gb|CW273637.1|CW273637 104_746_11404006_148_35367_091 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11404006, DNA
sequence
Length = 717
Score = 198 bits (426), Expect = 6e-050
Identities = 79/137 (57%), Positives = 98/137 (71%)
Frame = +1 / -2
Query: 100 QSRCEVIMYTIALLTFMSIGGFPSFVEDVKVFRKERLSGHYGVSEFVISNTISATPYLAG 279
Q+R ++ + A LTFM+IGGFPSFVED+K+F +ERL+GHYG S F I+NT+SA PYLA
Sbjct: 593 QARGSLLNFVAAFLTFMAIGGFPSFVEDMKIFGRERLNGHYGASSFTIANTVSAAPYLAL 414
Query: 280 VSLLPGAMLYYLTGLSKGADHFVYFXXXXXXXXXXXXXXXXXIAAVVPDFLMGIIVGAGV 459
+S++PGA+ YYL GL HF YF +A+ VPDFLMGII GAG+
Sbjct: 413 ISVVPGAIAYYLVGLQSSFGHFAYFALVLFTTMMVVEGLMMIVASAVPDFLMGIITGAGI 234
Query: 460 QGVMMLNGGFFRLPNEL 510
QGVMMLNGGFFRLPN+L
Sbjct: 233 QGVMMLNGGFFRLPNDL 183
Score = 121 bits (259), Expect = 7e-027
Identities = 59/125 (47%), Positives = 68/125 (54%)
Frame = -2 / +1
Query: 506 SLGRRKKPPLSIMTPCTPAPTMIPIRKSGTTAAMTIIMLXXXXXXXXXXXXXXXKWSAPL 327
SLGRRKKPPLSIMTP PAP M+P+RKSGT A I+ KW L
Sbjct: 187 SLGRRKKPPLSIMTPWMPAPVMMPMRKSGTALATIIMSPSTTIMVVKSTSAK*AKWPKLL 366
Query: 326 DRPVR*YSIAPGSRETPARYGVAEMVLEMTNSDTP*WPXXXXXXXXXXXXTKDGNPPIDM 147
RP R* ++APG+ E ARYG A+ VL + N D P* P T DG PP+ M
Sbjct: 367 CRPTR**AMAPGTTEMSARYGAADTVLAIVNDDAP*CPFSLSRPKIFMSSTNDGKPPMAM 546
Query: 146 KVRSA 132
VR A
Sbjct: 547 NVRKA 561
>gb|CW458366.1|CW458366 fsbb001f204j23f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f204j23, DNA
sequence
Length = 557
Score = 198 bits (426), Expect = 6e-050
Identities = 79/137 (57%), Positives = 98/137 (71%)
Frame = +1 / +3
Query: 100 QSRCEVIMYTIALLTFMSIGGFPSFVEDVKVFRKERLSGHYGVSEFVISNTISATPYLAG 279
Q+R ++ + A LTFM+IGGFPSFVED+K+F +ERL+GHYG S F I+NT+SA PYLA
Sbjct: 48 QARGSLLNFVAAFLTFMAIGGFPSFVEDMKIFGRERLNGHYGASSFTIANTVSAAPYLAL 227
Query: 280 VSLLPGAMLYYLTGLSKGADHFVYFXXXXXXXXXXXXXXXXXIAAVVPDFLMGIIVGAGV 459
+S++PGA+ YYL GL HF YF +A+ VPDFLMGII GAG+
Sbjct: 228 ISVVPGAIAYYLVGLQSSFGHFAYFALVLFTTMMVVEGLMMIVASAVPDFLMGIITGAGI 407
Query: 460 QGVMMLNGGFFRLPNEL 510
QGVMMLNGGFFRLPN+L
Sbjct: 408 QGVMMLNGGFFRLPNDL 458
Score = 121 bits (259), Expect = 7e-027
Identities = 59/125 (47%), Positives = 68/125 (54%)
Frame = -2 / -2
Query: 506 SLGRRKKPPLSIMTPCTPAPTMIPIRKSGTTAAMTIIMLXXXXXXXXXXXXXXXKWSAPL 327
SLGRRKKPPLSIMTP PAP M+P+RKSGT A I+ KW L
Sbjct: 454 SLGRRKKPPLSIMTPWMPAPVMMPMRKSGTALATIIMSPSTTIMVVKSTSAK*AKWPKLL 275
Query: 326 DRPVR*YSIAPGSRETPARYGVAEMVLEMTNSDTP*WPXXXXXXXXXXXXTKDGNPPIDM 147
RP R* ++APG+ E ARYG A+ VL + N D P* P T DG PP+ M
Sbjct: 274 CRPTR**AMAPGTTEMSARYGAADTVLAIVNDDAP*CPFSLSRPKIFMSSTNDGKPPMAM 95
Query: 146 KVRSA 132
VR A
Sbjct: 94 NVRKA 80
>gb|CL155898.1|CL155898 104_342_10782482_116_31474_194 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10782482, DNA
sequence
Length = 697
Score = 119 bits (254), Expect(2) = 4e-045
Identities = 46/55 (83%), Positives = 53/55 (96%)
Frame = +1 / +3
Query: 190 VFRKERLSGHYGVSEFVISNTISATPYLAGVSLLPGAMLYYLTGLSKGADHFVYF 354
VFRKERLSGHYGVSEFVISNT+SATPYL+ +++LPGAMLYYLTGL+KG DHF+YF
Sbjct: 15 VFRKERLSGHYGVSEFVISNTLSATPYLSVIAVLPGAMLYYLTGLTKGVDHFIYF 179
Score = 89.5 bits (189), Expect(2) = 2e-029
Identities = 37/40 (92%), Positives = 39/40 (97%)
Frame = -2 / -1
Query: 509 SSLGRRKKPPLSIMTPCTPAPTMIPIRKSGTTAAMTIIML 390
SSLGRRKKPPLSI+TPCTPAPTMIPIRKSGT AA+TIIML
Sbjct: 334 SSLGRRKKPPLSIITPCTPAPTMIPIRKSGTIAAITIIML 215
Score = 83.1 bits (175), Expect(2) = 4e-045
Identities = 34/35 (97%), Positives = 35/35 (100%)
Frame = +1 / +3
Query: 406 IAAVVPDFLMGIIVGAGVQGVMMLNGGFFRLPNEL 510
IAA+VPDFLMGIIVGAGVQGVMMLNGGFFRLPNEL
Sbjct: 231 IAAIVPDFLMGIIVGAGVQGVMMLNGGFFRLPNEL 335
Score = 60.2 bits (125), Expect(2) = 2e-029
Identities = 28/42 (66%), Positives = 30/42 (71%)
Frame = -2 / -1
Query: 338 SAPLDRPVR*YSIAPGSRETPARYGVAEMVLEMTNSDTP*WP 213
S PL PVR* SIAPG+ R GVAE V E+TNSDTP*WP
Sbjct: 163 STPLVSPVR**SIAPGNTAITDR*GVAERVFEITNSDTP*WP 38
>gb|CF755910.1|CF755910 DSAF1_2_D11.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_2_D11_A011 5', mRNA sequence
Length = 627
Score = 119 bits (254), Expect(2) = 4e-045
Identities = 46/55 (83%), Positives = 53/55 (96%)
Frame = +1 / +1
Query: 190 VFRKERLSGHYGVSEFVISNTISATPYLAGVSLLPGAMLYYLTGLSKGADHFVYF 354
VFRKERLSGHYGVSEFVISNT+SATPYL+ +++LPGAMLYYLTGL+KG DHF+YF
Sbjct: 163 VFRKERLSGHYGVSEFVISNTLSATPYLSVIAVLPGAMLYYLTGLTKGVDHFIYF 327
Score = 89.5 bits (189), Expect(2) = 2e-029
Identities = 37/40 (92%), Positives = 39/40 (97%)
Frame = -2 / -2
Query: 509 SSLGRRKKPPLSIMTPCTPAPTMIPIRKSGTTAAMTIIML 390
SSLGRRKKPPLSI+TPCTPAPTMIPIRKSGT AA+TIIML
Sbjct: 482 SSLGRRKKPPLSIITPCTPAPTMIPIRKSGTIAAITIIML 363
Score = 83.1 bits (175), Expect(2) = 4e-045
Identities = 34/35 (97%), Positives = 35/35 (100%)
Frame = +1 / +1
Query: 406 IAAVVPDFLMGIIVGAGVQGVMMLNGGFFRLPNEL 510
IAA+VPDFLMGIIVGAGVQGVMMLNGGFFRLPNEL
Sbjct: 379 IAAIVPDFLMGIIVGAGVQGVMMLNGGFFRLPNEL 483
Score = 60.2 bits (125), Expect(2) = 2e-029
Identities = 28/42 (66%), Positives = 30/42 (71%)
Frame = -2 / -2
Query: 338 SAPLDRPVR*YSIAPGSRETPARYGVAEMVLEMTNSDTP*WP 213
S PL PVR* SIAPG+ R GVAE V E+TNSDTP*WP
Sbjct: 311 STPLVSPVR**SIAPGNTAITDR*GVAERVFEITNSDTP*WP 186
>gb|BM324567.1|BM324567 PIC1_32_H03.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 500
Score = 173 bits (372), Expect(2) = 5e-044
Identities = 68/141 (48%), Positives = 96/141 (68%)
Frame = +1 / +2
Query: 88 YSSIQSRCEVIMYTIALLTFMSIGGFPSFVEDVKVFRKERLSGHYGVSEFVISNTISATP 267
Y+SI +R + +TFMSIGGFPSFVE++KVF++ERL+GHYGV+ FVISNTISATP
Sbjct: 71 YTSILARASCSAFVFGFVTFMSIGGFPSFVEEMKVFQRERLNGHYGVAAFVISNTISATP 250
Query: 268 YLAGVSLLPGAMLYYLTGLSKGADHFVYFXXXXXXXXXXXXXXXXXIAAVVPDFLMGIIV 447
+L + L G + Y++ L G +H+++F IA+V+P+FLMGII+
Sbjct: 251 FLILICFLSGTICYFMVRLHPGFEHYIFFVLNLYASVTVVESLMMAIASVIPNFLMGIII 430
Query: 448 GAGVQGVMMLNGGFFRLPNEL 510
GAG+ G+ ML G+FRLP ++
Sbjct: 431 GAGIXGIFMLVSGYFRLPYDI 493
Score = 25.4 bits (49), Expect(2) = 5e-044
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +1 / +2
Query: 28 IYMGIGVCLGTIFYQLG 78
IY+ + VC+GTI+ +G
Sbjct: 14 IYLLVTVCIGTIYLDVG 64
>gb|BI074601.1|BI074601 IP1_13_E09.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 541
Score = 176 bits (378), Expect = 3e-043
Identities = 69/141 (48%), Positives = 97/141 (68%)
Frame = +1 / +2
Query: 88 YSSIQSRCEVIMYTIALLTFMSIGGFPSFVEDVKVFRKERLSGHYGVSEFVISNTISATP 267
Y+SI +R + +TFMSIGGFPSFVE++KVF++ERL+GHYGV+ FVISNTISATP
Sbjct: 47 YTSILARASCSAFVFGFVTFMSIGGFPSFVEEMKVFQRERLNGHYGVAAFVISNTISATP 226
Query: 268 YLAGVSLLPGAMLYYLTGLSKGADHFVYFXXXXXXXXXXXXXXXXXIAAVVPDFLMGIIV 447
+L + L G + Y++ L G +H+++F IA+V+P+FLMGII+
Sbjct: 227 FLILICFLSGTICYFMVRLHPGFEHYIFFVLNLYASVTVVESLMMAIASVIPNFLMGIII 406
Query: 448 GAGVQGVMMLNGGFFRLPNEL 510
GAG+QG+ ML G+FRLP ++
Sbjct: 407 GAGIQGIFMLVSGYFRLPYDI 469
>gb|CD224712.1|CD224712 CCC1_35_B01.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_35_B01_A007 5', mRNA sequence
Length = 655
Score = 121 bits (258), Expect(2) = 6e-042
Identities = 50/53 (94%), Positives = 52/53 (98%)
Frame = +1 / +1
Query: 85 TYSSIQSRCEVIMYTIALLTFMSIGGFPSFVEDVKVFRKERLSGHYGVSEFVI 243
+YSSIQSRC VIMYT+ALLTFMSIGGFPSFVEDVKVFRKERLSGHYGVSEFVI
Sbjct: 496 SYSSIQSRCSVIMYTVALLTFMSIGGFPSFVEDVKVFRKERLSGHYGVSEFVI 654
Score = 85.8 bits (181), Expect(2) = 2e-027
Identities = 35/53 (66%), Positives = 39/53 (73%)
Frame = -2 / -3
Query: 242 MTNSDTP*WPXXXXXXXXXXXXTKDGNPPIDMKVRSAIVYMITSHRLWIEL*V 84
+TNSDTP*WP TKDGNPPIDMKV+SA VY+IT HRLWIEL*+
Sbjct: 653 ITNSDTP*WPLSLSFLKTFTSSTKDGNPPIDMKVKSATVYIITEHRLWIEL*L 495
Score = 73.5 bits (154), Expect(2) = 1e-022
Identities = 30/52 (57%), Positives = 39/52 (75%)
Frame = -1 / -2
Query: 243 DDELRHAVVAAQPLLSEHLDVFYEGWKSSDRHES*ECDSVHDYFTSTLDRAV 88
D + H +VA +PLLSE L VF++ WKSS+RHES*+C+ +H Y TS LDR V
Sbjct: 654 DHKF*HTIVATKPLLSEDLYVFHKRWKSSNRHES*KCNCIHYY*TSALDRTV 499
Score = 70.7 bits (148), Expect(2) = 6e-042
Identities = 25/28 (89%), Positives = 27/28 (96%)
Frame = +1 / +1
Query: 1 VGYYWMRLAIYMGIGVCLGTIFYQLGYS 84
+GYYWMRL IYMGIGVCLGTIFYQ+GYS
Sbjct: 415 IGYYWMRLGIYMGIGVCLGTIFYQVGYS 498
Score = 57.4 bits (119), Expect(2) = 2e-027
Identities = 23/27 (85%), Positives = 26/27 (96%)
Frame = -2 / -3
Query: 83 L*PSW*KIVPRHTPMPM*MARRIQ*YP 3
L*P+W*KIVPRHTPMP+*M +RIQ*YP
Sbjct: 497 L*PTW*KIVPRHTPMPI*MPKRIQ*YP 417
Score = 53.3 bits (110), Expect(2) = 1e-022
Identities = 20/28 (71%), Positives = 24/28 (85%)
Frame = -1 / -2
Query: 84 AVAKLVEDSA*AHANAHVDGQTHPVVPY 1
A+A LVEDSA* +ANAH+D QTHPV+ Y
Sbjct: 498 AIANLVEDSA*TYANAHIDAQTHPVISY 415
>gb|CW156950.1|CW156950 104_560_11146964_148_36381_078 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11146964, DNA
sequence
Length = 764
Score = 163 bits (351), Expect = 1e-039
Identities = 65/112 (58%), Positives = 79/112 (70%)
Frame = +1 / +1
Query: 175 VEDVKVFRKERLSGHYGVSEFVISNTISATPYLAGVSLLPGAMLYYLTGLSKGADHFVYF 354
VED+K+F +ERL+GHYG S F I+NT+SA PYLA +S++PGA+ YYL GL HF YF
Sbjct: 1 VEDMKIFGRERLNGHYGASSFTIANTVSAAPYLALISVVPGAIAYYLVGLQSSFGHFAYF 180
Query: 355 XXXXXXXXXXXXXXXXXIAAVVPDFLMGIIVGAGVQGVMMLNGGFFRLPNEL 510
+A+ VPDFLMGII GAG+QGVMMLNGGFFRLPN+L
Sbjct: 181 ALVLFTTMMVVEGLMMIVASAVPDFLMGIITGAGIQGVMMLNGGFFRLPNDL 336
Score = 105 bits (225), Expect = 3e-022
Identities = 50/98 (51%), Positives = 58/98 (59%)
Frame = -2 / -1
Query: 506 SLGRRKKPPLSIMTPCTPAPTMIPIRKSGTTAAMTIIMLXXXXXXXXXXXXXXXKWSAPL 327
SLGRRKKPPLSIMTP PAP M+P+RKSGT A I+ KW L
Sbjct: 332 SLGRRKKPPLSIMTPWMPAPVMMPMRKSGTALATIIMSPSTTIMVVKSTSAK*AKWPKLL 153
Query: 326 DRPVR*YSIAPGSRETPARYGVAEMVLEMTNSDTP*WP 213
RP R* ++APG+ E ARYG A+ VL + N D P* P
Sbjct: 152 CRPTR**AMAPGTTEMSARYGAADTVLAIVNDDAP*CP 39
>gb|CW129885.1|CW129885 104_512_11114810_148_34775_013 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11114810, DNA
sequence
Length = 676
Score = 131 bits (280), Expect(2) = 3e-039
Identities = 50/85 (58%), Positives = 65/85 (76%)
Frame = +1 / -3
Query: 100 QSRCEVIMYTIALLTFMSIGGFPSFVEDVKVFRKERLSGHYGVSEFVISNTISATPYLAG 279
Q+R ++ + A LTFM+IGGFPSFVED+K+F +ERL+GHYG S F I+NT+SA PYLA
Sbjct: 263 QARGSLLNFVAAFLTFMAIGGFPSFVEDMKIFGRERLNGHYGASSFTIANTVSAAPYLAL 84
Query: 280 VSLLPGAMLYYLTGLSKGADHFVYF 354
+S++PGA+ YYL GL HF YF
Sbjct: 83 ISVVPGAIAYYLVGLQSSFGHFAYF 9
Score = 51.5 bits (106), Expect(2) = 3e-039
Identities = 17/36 (47%), Positives = 28/36 (77%)
Frame = +1 / -1
Query: 1 VGYYWMRLAIYMGIGVCLGTIFYQLGYSTYSSIQSR 108
+GYYW+R AIY+ + +C+GT+FY +G+S S + S+
Sbjct: 475 LGYYWLRFAIYIMLCLCVGTVFYDIGHSYGSILVSK 368
>gb|CW251891.1|CW251891 104_714_11224187_116_35066_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11224187, DNA
sequence
Length = 617
Score = 131 bits (280), Expect(2) = 3e-039
Identities = 50/85 (58%), Positives = 65/85 (76%)
Frame = +1 / -1
Query: 100 QSRCEVIMYTIALLTFMSIGGFPSFVEDVKVFRKERLSGHYGVSEFVISNTISATPYLAG 279
Q+R ++ + A LTFM+IGGFPSFVED+K+F +ERL+GHYG S F I+NT+SA PYLA
Sbjct: 257 QARGSLLNFVAAFLTFMAIGGFPSFVEDMKIFGRERLNGHYGASSFTIANTVSAAPYLAL 78
Query: 280 VSLLPGAMLYYLTGLSKGADHFVYF 354
+S++PGA+ YYL GL HF YF
Sbjct: 77 ISVVPGAIAYYLVGLQSSFGHFAYF 3
Score = 51.5 bits (106), Expect(2) = 3e-039
Identities = 17/36 (47%), Positives = 28/36 (77%)
Frame = +1 / -2
Query: 1 VGYYWMRLAIYMGIGVCLGTIFYQLGYSTYSSIQSR 108
+GYYW+R AIY+ + +C+GT+FY +G+S S + S+
Sbjct: 469 LGYYWLRFAIYIMLCLCVGTVFYDIGHSYGSILVSK 362
>gb|CW232627.1|CW232627 104_685_11212918_148_37363_089 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11212918, DNA
sequence
Length = 617
Score = 127 bits (272), Expect(2) = 4e-038
Identities = 49/85 (57%), Positives = 64/85 (75%)
Frame = +1 / -1
Query: 100 QSRCEVIMYTIALLTFMSIGGFPSFVEDVKVFRKERLSGHYGVSEFVISNTISATPYLAG 279
Q+R ++ + A LTFM+IGGFPSFVED+K+F +ERL+GHY S F I+NT+SA PYLA
Sbjct: 260 QARGSLLNFVAAFLTFMAIGGFPSFVEDMKIFGRERLNGHYRASSFTIANTVSAAPYLAL 81
Query: 280 VSLLPGAMLYYLTGLSKGADHFVYF 354
+S++PGA+ YYL GL HF YF
Sbjct: 80 ISVVPGAIAYYLVGLQSSFGHFAYF 6
Score = 51.5 bits (106), Expect(2) = 4e-038
Identities = 17/36 (47%), Positives = 28/36 (77%)
Frame = +1 / -2
Query: 1 VGYYWMRLAIYMGIGVCLGTIFYQLGYSTYSSIQSR 108
+GYYW+R AIY+ + +C+GT+FY +G+S S + S+
Sbjct: 472 LGYYWLRFAIYIMLCLCVGTVFYDIGHSYGSILVSK 365
>gb|BH246250.1|BH246250 pSB1859.2 S. bicolor BTx623 PstI-digested total genomic DNA library
Sorghum bicolor genomic clone pSB1859, DNA sequence
Length = 436
Score = 120 bits (256), Expect(2) = 4e-035
Identities = 46/75 (61%), Positives = 61/75 (81%)
Frame = +1 / -2
Query: 100 QSRCEVIMYTIALLTFMSIGGFPSFVEDVKVFRKERLSGHYGVSEFVISNTISATPYLAG 279
Q+R ++ + A LTFM+IGGFPSFVED+K+F +ERL+GHYG S F I+NT+SA PYLA
Sbjct: 228 QARGSLLNFVAAFLTFMAIGGFPSFVEDMKIFGRERLNGHYGASSFTIANTVSAAPYLAL 49
Query: 280 VSLLPGAMLYYLTGL 324
+S++PGA+ YYL GL
Sbjct: 48 ISVVPGAIAYYLVGL 4
Score = 48.3 bits (99), Expect(2) = 4e-035
Identities = 16/34 (47%), Positives = 26/34 (76%)
Frame = +1 / -3
Query: 7 YYWMRLAIYMGIGVCLGTIFYQLGYSTYSSIQSR 108
YYW+R AIY+ + +C+GT+FY +G+S S + S+
Sbjct: 434 YYWLRFAIYIMLCLCVGTVFYDIGHSYGSILVSK 333
>gb|CW381903.1|CW381903 fsbb001f063i11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f063i11, DNA
sequence
Length = 763
Score = 115 bits (245), Expect(2) = 1e-032
Identities = 45/98 (45%), Positives = 65/98 (66%)
Frame = +1 / +3
Query: 169 SFVEDVKVFRKERLSGHYGVSEFVISNTISATPYLAGVSLLPGAMLYYLTGLSKGADHFV 348
SF ++VF++ERL+GHYGV+ FVISNTISATP+L + L G + Y++ L G +H++
Sbjct: 237 SFASFIQVFQRERLNGHYGVAAFVISNTISATPFLILICFLSGTICYFMVRLHPGFEHYI 416
Query: 349 YFXXXXXXXXXXXXXXXXXIAAVVPDFLMGIIVGAGVQ 462
+F IA+V+P+FLMGII+GAG+Q
Sbjct: 417 FFVLNLYASVTVVESLMMAIASVIPNFLMGIIIGAGIQ 530
Score = 45.5 bits (93), Expect(2) = 1e-032
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = +1 / +1
Query: 97 IQSRCEVIMYTIALLTFMSIGGFPSFVEDVKV 192
+Q+R + +TFMSIGGFPSFVE++KV
Sbjct: 82 LQARASCSAFVFGFVTFMSIGGFPSFVEEMKV 177
>gb|CW170788.1|CW170788 104_581_11155395_116_36517_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11155395, DNA
sequence
Length = 708
Score = 115 bits (245), Expect(2) = 1e-032
Identities = 45/98 (45%), Positives = 65/98 (66%)
Frame = +1 / +2
Query: 169 SFVEDVKVFRKERLSGHYGVSEFVISNTISATPYLAGVSLLPGAMLYYLTGLSKGADHFV 348
SF ++VF++ERL+GHYGV+ FVISNTISATP+L + L G + Y++ L G +H++
Sbjct: 203 SFASFIQVFQRERLNGHYGVAAFVISNTISATPFLILICFLSGTICYFMVRLHPGFEHYI 382
Query: 349 YFXXXXXXXXXXXXXXXXXIAAVVPDFLMGIIVGAGVQ 462
+F IA+V+P+FLMGII+GAG+Q
Sbjct: 383 FFVLNLYASVTVVESLMMAIASVIPNFLMGIIIGAGIQ 496
Score = 45.5 bits (93), Expect(2) = 1e-032
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = +1 / +3
Query: 97 IQSRCEVIMYTIALLTFMSIGGFPSFVEDVKV 192
+Q+R + +TFMSIGGFPSFVE++KV
Sbjct: 48 LQARASCSAFVFGFVTFMSIGGFPSFVEEMKV 143
>gb|CW198921.1|CW198921 104_623_11183235_116_36840_002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11183235, DNA
sequence
Length = 728
Score = 138 bits (295), Expect = 8e-032
Identities = 53/97 (54%), Positives = 70/97 (72%)
Frame = +1 / +3
Query: 220 YGVSEFVISNTISATPYLAGVSLLPGAMLYYLTGLSKGADHFVYFXXXXXXXXXXXXXXX 399
YG + FVISNT+S+ PYL +S++PGA+ YYLTGL +G DHF+YF
Sbjct: 3 YGATAFVISNTLSSAPYLGIISIIPGAICYYLTGLQRGFDHFLYFAAVLWACTMLVEGLM 182
Query: 400 XXIAAVVPDFLMGIIVGAGVQGVMMLNGGFFRLPNEL 510
+AA+VPDFL+GII G+G+QG++MLN GFFRLPN+L
Sbjct: 183 MIVAAIVPDFLLGIITGSGMQGLLMLNAGFFRLPNDL 293
>gb|CW069461.1|CW069461 104_319_10525911_1_30093 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10525911, DNA
sequence
Length = 643
Score = 78.5 bits (165), Expect(3) = 2e-030
Identities = 30/59 (50%), Positives = 43/59 (72%)
Frame = +1 / -2
Query: 169 SFVEDVKVFRKERLSGHYGVSEFVISNTISATPYLAGVSLLPGAMLYYLTGLSKGADHF 345
SF ++VF++ERL+GHYGV+ FVISNTISATP+L + L G + Y++ L G +H+
Sbjct: 177 SFASFIQVFQRERLNGHYGVAAFVISNTISATPFLILICFLSGTICYFMVRLHPGFEHY 1
Score = 47.3 bits (97), Expect(3) = 2e-030
Identities = 18/37 (48%), Positives = 25/37 (67%)
Frame = +1 / -3
Query: 4 GYYWMRLAIYMGIGVCLGTIFYQLGYSTYSSIQSRCE 114
GYYW+RL IY+ + VC+GTI+ +G S + SR E
Sbjct: 560 GYYWLRLLIYLLVTVCIGTIYLDVGTKYTSILVSRKE 450
Score = 45.5 bits (93), Expect(3) = 2e-030
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = +1 / -3
Query: 97 IQSRCEVIMYTIALLTFMSIGGFPSFVEDVKV 192
+Q+R + +TFMSIGGFPSFVE++KV
Sbjct: 332 LQARASCSAFVFGFVTFMSIGGFPSFVEEMKV 237
>gb|CW089875.1|CW089875 104_435_10948960_116_32613_056 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10948960, DNA
sequence
Length = 709
Score = 107 bits (229), Expect(2) = 1e-029
Identities = 42/99 (42%), Positives = 64/99 (64%)
Frame = +1 / +3
Query: 169 SFVEDVKVFRKERLSGHYGVSEFVISNTISATPYLAGVSLLPGAMLYYLTGLSKGADHFV 348
+ + V+VF++ERL+GHYGV FVISNT+SA P+L ++ + G + Y++ L G H++
Sbjct: 330 NLISIVQVFQRERLNGHYGVLAFVISNTLSAMPFLILITFVSGTLCYFMVRLHPGFMHYL 509
Query: 349 YFXXXXXXXXXXXXXXXXXIAAVVPDFLMGIIVGAGVQG 465
+F IA+V+P+FLMGII+GAG+QG
Sbjct: 510 FFVLALYASVTVVESLMMAIASVIPNFLMGIIIGAGIQG 626
Score = 42.8 bits (87), Expect(2) = 1e-029
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +1 / +2
Query: 124 YTIALLTFMSIGGFPSFVEDVKV 192
+ +TFMSIGGFPSFVED+KV
Sbjct: 212 FIFGFVTFMSIGGFPSFVEDMKV 280
>gb|BI075448.1|BI075448 IP1_20_F08.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 525
Score = 105 bits (225), Expect(2) = 2e-029
Identities = 42/76 (55%), Positives = 57/76 (75%)
Frame = +1 / +3
Query: 88 YSSIQSRCEVIMYTIALLTFMSIGGFPSFVEDVKVFRKERLSGHYGVSEFVISNTISATP 267
Y+SI +R + +TFMSIGGFPSFVE++KVF++ERL+GHYGV+ FVISNTISATP
Sbjct: 297 YTSILARASCSAFVFGFVTFMSIGGFPSFVEEMKVFQRERLNGHYGVAAFVISNTISATP 476
Query: 268 YLAGVSLLPGAMLYYL 315
+L + L + Y++
Sbjct: 477 FLILICFLSETICYFM 524
Score = 44.1 bits (90), Expect(2) = 2e-029
Identities = 14/25 (56%), Positives = 20/25 (80%)
Frame = +1 / +3
Query: 4 GYYWMRLAIYMGIGVCLGTIFYQLG 78
GYYW+RL IY+ + VC+GTI+ +G
Sbjct: 216 GYYWLRLLIYLLVTVCIGTIYLDVG 290
>gb|CW158295.1|CW158295 104_564_11148744_148_36397_096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11148744, DNA
sequence
Length = 715
Score = 72.5 bits (152), Expect(2) = 2e-027
Identities = 29/32 (90%), Positives = 31/32 (96%)
Frame = +1 / -1
Query: 97 IQSRCEVIMYTIALLTFMSIGGFPSFVEDVKV 192
+QSRC VIMYT+ALLTFMSIGGFPSFVEDVKV
Sbjct: 193 LQSRCSVIMYTVALLTFMSIGGFPSFVEDVKV 98
Score = 70.7 bits (148), Expect(2) = 2e-027
Identities = 25/28 (89%), Positives = 27/28 (96%)
Frame = +1 / -1
Query: 1 VGYYWMRLAIYMGIGVCLGTIFYQLGYS 84
+GYYWMRL IYMGIGVCLGTIFYQ+GYS
Sbjct: 379 IGYYWMRLGIYMGIGVCLGTIFYQVGYS 296
>gb|CW204521.1|CW204521 104_632_11186586_148_36923_071 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11186586, DNA
sequence
Length = 679
Score = 72.5 bits (152), Expect(2) = 2e-027
Identities = 29/32 (90%), Positives = 31/32 (96%)
Frame = +1 / -3
Query: 97 IQSRCEVIMYTIALLTFMSIGGFPSFVEDVKV 192
+QSRC VIMYT+ALLTFMSIGGFPSFVEDVKV
Sbjct: 164 LQSRCSVIMYTVALLTFMSIGGFPSFVEDVKV 69
Score = 70.7 bits (148), Expect(2) = 2e-027
Identities = 25/28 (89%), Positives = 27/28 (96%)
Frame = +1 / -3
Query: 1 VGYYWMRLAIYMGIGVCLGTIFYQLGYS 84
+GYYWMRL IYMGIGVCLGTIFYQ+GYS
Sbjct: 350 IGYYWMRLGIYMGIGVCLGTIFYQVGYS 267
>gb|CN142497.1|CN142497 WOUND1_10_H05.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_10_H05_A002 3', mRNA sequence
Length = 715
Score = 109 bits (232), Expect = 4e-023
Identities = 41/77 (53%), Positives = 55/77 (71%)
Frame = +1 / +3
Query: 280 VSLLPGAMLYYLTGLSKGADHFVYFXXXXXXXXXXXXXXXXXIAAVVPDFLMGIIVGAGV 459
+S++PGA+ YYLTGL +G DHF+YF +AA+VPDFL+GII G+G+
Sbjct: 6 ISIIPGAICYYLTGLQRGFDHFLYFAAVLWACTMLVEGLMMIVAAIVPDFLLGIITGSGM 185
Query: 460 QGVMMLNGGFFRLPNEL 510
QG++MLN GFFRLPN+L
Sbjct: 186 QGLLMLNAGFFRLPNDL 236
>gb|CW316863.1|CW316863 104_808_11473115_116_35851_040 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11473115, DNA
sequence
Length = 681
Score = 108 bits (230), Expect = 7e-023
Identities = 42/90 (46%), Positives = 60/90 (66%)
Frame = +1 / +1
Query: 193 FRKERLSGHYGVSEFVISNTISATPYLAGVSLLPGAMLYYLTGLSKGADHFVYFXXXXXX 372
F++ERL+GHYGV+ FVISNTISATP+L + L G + Y++ L G +H+++F
Sbjct: 1 FQRERLNGHYGVAAFVISNTISATPFLILICFLSGTICYFMVRLHPGFEHYIFFVLNLYA 180
Query: 373 XXXXXXXXXXXIAAVVPDFLMGIIVGAGVQ 462
IA+V+P+FLMGII+GAG+Q
Sbjct: 181 SVTVVESLMMAIASVIPNFLMGIIIGAGIQ 270
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 498,338,739
Number of Sequences: 832831
Number of extensions: 5565275
Number of successful extensions: 112383
Number of sequences better than 1.0e-020: 23
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 13878995508
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)