TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3336914.2.1
(1448 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE358668.1|BE358668 DG1_30_A12.g1_A002 Dark Grown 1 (DG1... 267 8e-076
gb|CD430191.1|CD430191 ETH1_17_D09.g1_A002 Ethylene-treated... 271 2e-072
gb|CD430149.1|CD430149 ETH1_17_D09.b1_A002 Ethylene-treated... 228 9e-060
gb|BE358476.1|BE358476 DG1_30_A12.b1_A002 Dark Grown 1 (DG1... 211 2e-053
gb|CW302826.1|CW302826 104_787_11464921_148_35672_013 Sorgh... 204 4e-051
gb|BG558971.1|BG558971 RHIZ2_53_A03.g1_A003 Rhizome2 (RHIZ2... 184 2e-045
gb|BG559288.1|BG559288 RHIZ2_53_A03.b1_A003 Rhizome2 (RHIZ2... 163 5e-039
gb|CW188528.1|CW188528 104_608_11173082_148_36735_009 Sorgh... 125 1e-027
gb|CW266219.1|CW266219 104_735_11232307_148_35265_066 Sorgh... 121 3e-026
gb|CW137855.1|CW137855 104_525_11119892_148_34873_074 Sorgh... 66 1e-025
gb|CL178310.1|CL178310 104_386_10894490_148_31911_170 Sorgh... 66 2e-025
gb|CW137854.1|CW137854 104_525_11119892_116_34877_074 Sorgh... 62 4e-024
gb|CL150235.1|CL150235 104_331_10778376_116_31356_312 Sorgh... 86 3e-022
gb|AW745074.1|AW745074 LG1_386_D11.b1_A002 Light Grown 1 (L... 86 3e-022
gb|CW347588.1|CW347588 fsbb001f007i23k0 Sorghum methylation... 62 7e-021
>gb|BE358668.1|BE358668 DG1_30_A12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 586
Score = 267 bits (578), Expect(2) = 8e-076
Identities = 113/140 (80%), Positives = 127/140 (90%)
Frame = -1 / +1
Query: 584 FFHDIVAGTSPTAIRIAQGAASNTSSTSFGAMVAIDDPLTTGPTRAAGTEVGRAQGTYTF 405
F + +SPTA+RIAQ A+SNTSSTS GA+VAIDDPLTTGPTR++GTE+GRAQGTYTF
Sbjct: 58 FHDIVAGTSSPTAVRIAQXASSNTSSTSXGAVVAIDDPLTTGPTRSSGTEIGRAQGTYTF 237
Query: 404 ADQQTFGLLMVMDFVFTAGEHKGSTLSILGRXEVLSDVREMSIVGGSGKFRMARGYVQAH 225
ADQ TFGLLMVM+FVFTAG+H GSTLSILGR EVL+DVREMSIVGGSGKFRMA+GYVQAH
Sbjct: 238 ADQTTFGLLMVMNFVFTAGDHNGSTLSILGRNEVLTDVREMSIVGGSGKFRMAKGYVQAH 417
Query: 224 TIDSGFKSGETVVQYTVNVR 165
TIDSG +GETVVQYTVNV+
Sbjct: 418 TIDSGATTGETVVQYTVNVK 477
Score = 225 bits (486), Expect(2) = 2e-062
Identities = 98/130 (75%), Positives = 101/130 (77%)
Frame = +1 / -3
Query: 166 LTLTVYWTTVSPDLKPESMVCAWTYPRAMRNFPLPPTMXXXXXXXXXXXXPRMESVLPLC 345
LTLTVYWTTVSP + PESMVCAWT P AMRNFPLPPTM PRMESVLPL
Sbjct: 476 LTLTVYWTTVSPVVAPESMVCAWT*PLAMRNFPLPPTMLISRTSVSTSFRPRMESVLPLW 297
Query: 346 SPAVNTKSITMRRPNVCWSANV*VPWARPTSVPAARVGPVVSGSSMATIAPKLVDEVLDA 525
SPAVNTK ITMRRPNV WSANV*VPWARP SVP RVGPVV GSSMAT AP V+EVLD
Sbjct: 296 SPAVNTKFITMRRPNVVWSANV*VPWARPISVPDDRVGPVVRGSSMATTAPXEVEEVLDD 117
Query: 526 APCAMRMAVG 555
A CA+R AVG
Sbjct: 116 AXCAIRTAVG 87
Score = 39.1 bits (79), Expect(2) = 8e-076
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = -3 / +3
Query: 606 RIHDLQGVLPRHRGGD 559
R+HDLQ +LPRHRGGD
Sbjct: 33 RVHDLQALLPRHRGGD 80
Score = 36.3 bits (73), Expect(2) = 2e-062
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +1 / -3
Query: 559 VPATMSWKNTLKVVNPL 609
VPATMSWK +LKVVNP+
Sbjct: 80 VPATMSWK*SLKVVNPV 30
>gb|CD430191.1|CD430191 ETH1_17_D09.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_17_D09_A002 5', mRNA sequence
Length = 761
Score = 271 bits (586), Expect(2) = 2e-072
Identities = 114/140 (81%), Positives = 128/140 (91%)
Frame = -1 / +3
Query: 584 FFHDIVAGTSPTAIRIAQGAASNTSSTSFGAMVAIDDPLTTGPTRAAGTEVGRAQGTYTF 405
F + +SPTA+RIAQ A+SNTSSTSFGA+VAIDDPLTTGPTR++GTE+GRAQGTYTF
Sbjct: 129 FHDIVAGTSSPTAVRIAQAASSNTSSTSFGAVVAIDDPLTTGPTRSSGTEIGRAQGTYTF 308
Query: 404 ADQQTFGLLMVMDFVFTAGEHKGSTLSILGRXEVLSDVREMSIVGGSGKFRMARGYVQAH 225
ADQ TFGLLMVM+FVFTAG+H GSTLSILGR EVL+DVREMSIVGGSGKFRMA+GYVQAH
Sbjct: 309 ADQTTFGLLMVMNFVFTAGDHNGSTLSILGRNEVLTDVREMSIVGGSGKFRMAKGYVQAH 488
Query: 224 TIDSGFKSGETVVQYTVNVR 165
TIDSG +GETVVQYTVNV+
Sbjct: 489 TIDSGATTGETVVQYTVNVK 548
Score = 228 bits (493), Expect(3) = 6e-061
Identities = 99/130 (76%), Positives = 102/130 (78%)
Frame = +1 / -2
Query: 166 LTLTVYWTTVSPDLKPESMVCAWTYPRAMRNFPLPPTMXXXXXXXXXXXXPRMESVLPLC 345
LTLTVYWTTVSP + PESMVCAWT P AMRNFPLPPTM PRMESVLPL
Sbjct: 547 LTLTVYWTTVSPVVAPESMVCAWT*PLAMRNFPLPPTMLISRTSVSTSFRPRMESVLPLW 368
Query: 346 SPAVNTKSITMRRPNVCWSANV*VPWARPTSVPAARVGPVVSGSSMATIAPKLVDEVLDA 525
SPAVNTK ITMRRPNV WSANV*VPWARP SVP RVGPVV GSSMAT APK V+EVLD
Sbjct: 367 SPAVNTKFITMRRPNVVWSANV*VPWARPISVPDDRVGPVVRGSSMATTAPKEVEEVLDD 188
Query: 526 APCAMRMAVG 555
A CA+R AVG
Sbjct: 187 AACAIRTAVG 158
Score = 24.4 bits (47), Expect(2) = 2e-072
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = -2 / +1
Query: 58 CRSSMLLHDM 29
CRSS+L+HDM
Sbjct: 661 CRSSVLVHDM 690
Score = 24.0 bits (46), Expect(3) = 6e-061
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +3 / -1
Query: 558 RPRHDVVEEHL 590
RPRHDVVE L
Sbjct: 152 RPRHDVVEVEL 120
Score = 23.1 bits (44), Expect(3) = 6e-061
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +3 / -1
Query: 30 MSCSNIEERQ 59
MSC+N EERQ
Sbjct: 689 MSCTNTEERQ 660
>gb|CD430149.1|CD430149 ETH1_17_D09.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_17_D09_A002 3', mRNA sequence
Length = 544
Score = 228 bits (493), Expect(2) = 9e-060
Identities = 95/110 (86%), Positives = 105/110 (95%)
Frame = -1 / +2
Query: 494 AMVAIDDPLTTGPTRAAGTEVGRAQGTYTFADQQTFGLLMVMDFVFTAGEHKGSTLSILG 315
A+VAIDDPLTTGPTR++GTE+GRAQGTYTFADQ TFGLLMVM+FVFTAG+H GSTLSILG
Sbjct: 2 AVVAIDDPLTTGPTRSSGTEIGRAQGTYTFADQTTFGLLMVMNFVFTAGDHNGSTLSILG 181
Query: 314 RXEVLSDVREMSIVGGSGKFRMARGYVQAHTIDSGFKSGETVVQYTVNVR 165
R EVL+DVREMSIVGGSGKFRMA+GYVQAHTIDSG +GETVVQYTVNV+
Sbjct: 182 RNEVLTDVREMSIVGGSGKFRMAKGYVQAHTIDSGATTGETVVQYTVNVK 331
Score = 192 bits (413), Expect(2) = 2e-048
Identities = 84/110 (76%), Positives = 85/110 (77%)
Frame = +1 / -2
Query: 166 LTLTVYWTTVSPDLKPESMVCAWTYPRAMRNFPLPPTMXXXXXXXXXXXXPRMESVLPLC 345
LTLTVYWTTVSP + PESMVCAWT P AMRNFPLPPTM PRMESVLPL
Sbjct: 330 LTLTVYWTTVSPVVAPESMVCAWT*PLAMRNFPLPPTMLISRTSVSTSFRPRMESVLPLW 151
Query: 346 SPAVNTKSITMRRPNVCWSANV*VPWARPTSVPAARVGPVVSGSSMATIA 495
SPAVNTK ITMRRPNV WSANV*VP ARP SVP RVGPVV GSSMAT A
Sbjct: 150 SPAVNTKFITMRRPNVVWSANV*VPXARPISVPDDRVGPVVRGSSMATTA 1
Score = 24.4 bits (47), Expect(2) = 9e-060
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = -2 / +3
Query: 58 CRSSMLLHDM 29
CRSS+L+HDM
Sbjct: 444 CRSSVLVHDM 473
Score = 23.1 bits (44), Expect(2) = 2e-048
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +3 / -1
Query: 30 MSCSNIEERQ 59
MSC+N EERQ
Sbjct: 472 MSCTNTEERQ 443
>gb|BE358476.1|BE358476 DG1_30_A12.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 448
Score = 211 bits (456), Expect = 2e-053
Identities = 89/110 (80%), Positives = 100/110 (90%)
Frame = -1 / +3
Query: 584 FFHDIVAGTSPTAIRIAQGAASNTSSTSFGAMVAIDDPLTTGPTRAAGTEVGRAQGTYTF 405
F + +SPTA+RIAQ A+SNTSSTSFGA+VAIDDPLTTGPTR++GTE+GRAQGTYTF
Sbjct: 117 FHDIVAGTSSPTAVRIAQAASSNTSSTSFGAVVAIDDPLTTGPTRSSGTEIGRAQGTYTF 296
Query: 404 ADQQTFGLLMVMDFVFTAGEHKGSTLSILGRXEVLSDVREMSIVGGSGKF 255
ADQ TFGLLMVM+FVFTAG+H GSTLSILGR EVL+DVREMSIVGGSGKF
Sbjct: 297 ADQTTFGLLMVMNFVFTAGDHNGSTLSILGRNEVLTDVREMSIVGGSGKF 446
Score = 171 bits (367), Expect(2) = 2e-042
Identities = 75/101 (74%), Positives = 77/101 (76%)
Frame = +1 / -1
Query: 253 RNFPLPPTMXXXXXXXXXXXXPRMESVLPLCSPAVNTKSITMRRPNVCWSANV*VPWARP 432
RNFPLPPTM PRMESVLPL SPAVNTK ITMRRPNV WSANV*VPWARP
Sbjct: 448 RNFPLPPTMLISRTSVSTSFRPRMESVLPLWSPAVNTKFITMRRPNVVWSANV*VPWARP 269
Query: 433 TSVPAARVGPVVSGSSMATIAPKLVDEVLDAAPCAMRMAVG 555
SVP RVGPVV GSSMAT APK V+EVLD A CA+R AVG
Sbjct: 268 ISVPDDRVGPVVRGSSMATTAPKEVEEVLDDAACAIRTAVG 146
Score = 24.0 bits (46), Expect(2) = 2e-042
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +3 / -3
Query: 558 RPRHDVVEEHL 590
RPRHDVVE L
Sbjct: 140 RPRHDVVEVEL 108
>gb|CW302826.1|CW302826 104_787_11464921_148_35672_013 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11464921, DNA
sequence
Length = 682
Score = 204 bits (439), Expect = 4e-051
Identities = 86/107 (80%), Positives = 97/107 (90%)
Frame = -1 / +1
Query: 584 FFHDIVAGTSPTAIRIAQGAASNTSSTSFGAMVAIDDPLTTGPTRAAGTEVGRAQGTYTF 405
F + +SPTA+RIAQ A+SNTSSTSFGA+VAIDDPLTTGPTR++GTE+GRAQGTYTF
Sbjct: 361 FHDIVAGTSSPTAVRIAQAASSNTSSTSFGAVVAIDDPLTTGPTRSSGTEIGRAQGTYTF 540
Query: 404 ADQQTFGLLMVMDFVFTAGEHKGSTLSILGRXEVLSDVREMSIVGGS 264
ADQ TFGLLMVM+FVFTAG+H GSTLSILGR EVL+DVREMSIVGGS
Sbjct: 541 ADQTTFGLLMVMNFVFTAGDHNGSTLSILGRNEVLTDVREMSIVGGS 681
Score = 160 bits (343), Expect(2) = 4e-039
Identities = 71/97 (73%), Positives = 73/97 (75%)
Frame = +1 / -3
Query: 265 LPPTMXXXXXXXXXXXXPRMESVLPLCSPAVNTKSITMRRPNVCWSANV*VPWARPTSVP 444
LPPTM PRMESVLPL SPAVNTK ITMRRPNV WSANV*VPWARP SVP
Sbjct: 680 LPPTMLISRTSVSTSFRPRMESVLPLWSPAVNTKFITMRRPNVVWSANV*VPWARPISVP 501
Query: 445 AARVGPVVSGSSMATIAPKLVDEVLDAAPCAMRMAVG 555
RVGPVV GSSMAT APK V+EVLD A CA+R AVG
Sbjct: 500 DDRVGPVVRGSSMATTAPKEVEEVLDDAACAIRTAVG 390
Score = 24.0 bits (46), Expect(2) = 4e-039
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +3 / -2
Query: 558 RPRHDVVEEHL 590
RPRHDVVE L
Sbjct: 384 RPRHDVVEVEL 352
>gb|BG558971.1|BG558971 RHIZ2_53_A03.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 472
Score = 184 bits (397), Expect = 2e-045
Identities = 78/88 (88%), Positives = 83/88 (94%)
Frame = -1 / +2
Query: 428 RAQGTYTFADQQTFGLLMVMDFVFTAGEHKGSTLSILGRXEVLSDVREMSIVGGSGKFRM 249
RAQGTYTFADQ TFGLLMVM+FVFTAG+H GSTLSILGR EVLSDVREMSIVGGSGKFRM
Sbjct: 2 RAQGTYTFADQSTFGLLMVMNFVFTAGDHNGSTLSILGRNEVLSDVREMSIVGGSGKFRM 181
Query: 248 ARGYVQAHTIDSGFKSGETVVQYTVNVR 165
A+GYVQAHTIDSG +GETVVQYTVNV+
Sbjct: 182 AKGYVQAHTIDSGATTGETVVQYTVNVK 265
Score = 158 bits (340), Expect = 2e-037
Identities = 67/88 (76%), Positives = 68/88 (77%)
Frame = +1 / -2
Query: 166 LTLTVYWTTVSPDLKPESMVCAWTYPRAMRNFPLPPTMXXXXXXXXXXXXPRMESVLPLC 345
LTLTVYWTTVSP + PESMVCAWT P AMRN PLPPTM PRMESVLPL
Sbjct: 264 LTLTVYWTTVSPVVAPESMVCAWT*PLAMRNLPLPPTMLISRTSLRTSFRPRMESVLPLW 85
Query: 346 SPAVNTKSITMRRPNVCWSANV*VPWAR 429
SPAVNTK ITMRRPNV WSANV*VPWAR
Sbjct: 84 SPAVNTKFITMRRPNVDWSANV*VPWAR 1
>gb|BG559288.1|BG559288 RHIZ2_53_A03.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 381
Score = 163 bits (351), Expect = 5e-039
Identities = 67/86 (77%), Positives = 77/86 (89%)
Frame = -1 / +3
Query: 584 FFHDIVAGTSPTAIRIAQGAASNTSSTSFGAMVAIDDPLTTGPTRAAGTEVGRAQGTYTF 405
F + +SPTA+RIAQ A+SNTSSTSFGA+VAIDDPLTTGPTR++GTE+GRAQGTYTF
Sbjct: 123 FHDIVAGTSSPTAVRIAQAASSNTSSTSFGAVVAIDDPLTTGPTRSSGTEIGRAQGTYTF 302
Query: 404 ADQQTFGLLMVMDFVFTAGEHKGSTL 327
ADQ TFGLLMVM+FVFTAG+H GSTL
Sbjct: 303 ADQSTFGLLMVMNFVFTAGDHNGSTL 380
Score = 138 bits (297), Expect(2) = 8e-033
Identities = 62/76 (81%), Positives = 64/76 (84%)
Frame = +1 / -3
Query: 328 SVLPLCSPAVNTKSITMRRPNVCWSANV*VPWARPTSVPAARVGPVVSGSSMATIAPKLV 507
SVLPL SPAVNTK ITMRRPNV WSANV*VPWARP SVP RVGPVV GSSMAT APK V
Sbjct: 379 SVLPLWSPAVNTKFITMRRPNVDWSANV*VPWARPISVPDDRVGPVVRGSSMATTAPKEV 200
Query: 508 DEVLDAAPCAMRMAVG 555
+EVLD A CA+R AVG
Sbjct: 199 EEVLDDAACAIRTAVG 152
Score = 24.0 bits (46), Expect(2) = 8e-033
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +3 / -2
Query: 558 RPRHDVVEEHL 590
RPRHDVVE L
Sbjct: 146 RPRHDVVEVEL 114
>gb|CW188528.1|CW188528 104_608_11173082_148_36735_009 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11173082, DNA
sequence
Length = 646
Score = 125 bits (268), Expect = 1e-027
Identities = 56/115 (48%), Positives = 73/115 (63%)
Frame = -1 / -2
Query: 500 FGAMVAIDDPLTTGPTRAAGTEVGRAQGTYTFADQQTFGLLMVMDFVFTAGEHKGSTLSI 321
FG + +DDPLT GP +++ VGRAQG Y +DQ G L M+ VFTAG++ GSTL++
Sbjct: 639 FGMVNVMDDPLTDGPEQSSSAVVGRAQGLYMGSDQAKLGFLQAMNLVFTAGDYNGSTLAL 460
Query: 320 LGRXEVLSDVREMSIVGGSGKFRMARGYVQAHTIDSGFKSGETVVQYTVNVRA*L 156
LGR L VRE+ +VGG+G FR ARGY T F +G+ V+Y V V *L
Sbjct: 459 LGRNCPLDAVRELPVVGGTGAFRFARGYALLRTHWLDFTTGDATVEYDVYVMH*L 295
Score = 105 bits (223), Expect = 2e-021
Identities = 50/114 (43%), Positives = 62/114 (54%)
Frame = +1 / +2
Query: 157 S*ALTLTVYWTTVSPDLKPESMVCAWTYPRAMRNFPLPPTMXXXXXXXXXXXXPRMESVL 336
S* +T T Y T SP +K V + YPRA RN P+PPT P SVL
Sbjct: 296 S*CMT*TSYSTVASPVVKSSQWVRSSAYPRAKRNAPVPPTTGSSRTASSGQLRPSSASVL 475
Query: 337 PLCSPAVNTKSITMRRPNVCWSANV*VPWARPTSVPAARVGPVVSGSSMATIAP 498
PL SPAVNT+ + R+P++ WS + PWARPT+ GP VSGSS+ P
Sbjct: 476 PL*SPAVNTRFMAWRKPSLAWSDPMYRPWARPTTALELCSGPSVSGSSITFTIP 637
>gb|CW266219.1|CW266219 104_735_11232307_148_35265_066 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11232307, DNA
sequence
Length = 703
Score = 121 bits (259), Expect = 3e-026
Identities = 54/109 (49%), Positives = 70/109 (64%)
Frame = -1 / -2
Query: 482 IDDPLTTGPTRAAGTEVGRAQGTYTFADQQTFGLLMVMDFVFTAGEHKGSTLSILGRXEV 303
+DDPLT GP +++ VGRAQG Y +DQ G L M+ VFTAG++ GSTL++LGR
Sbjct: 693 MDDPLTDGPEQSSSAVVGRAQGLYMGSDQAKLGFLQAMNLVFTAGDYNGSTLALLGRNCP 514
Query: 302 LSDVREMSIVGGSGKFRMARGYVQAHTIDSGFKSGETVVQYTVNVRA*L 156
L VRE+ +VGG+G FR ARGY T F +G+ V+Y V V *L
Sbjct: 513 LDAVRELPVVGGTGAFRFARGYALLRTHWLDFTTGDATVEYDVYVMH*L 367
Score = 103 bits (220), Expect = 6e-021
Identities = 49/109 (44%), Positives = 61/109 (55%)
Frame = +1 / +2
Query: 157 S*ALTLTVYWTTVSPDLKPESMVCAWTYPRAMRNFPLPPTMXXXXXXXXXXXXPRMESVL 336
S* +T T Y T SP +K V + YPRA RN P+PPT P SVL
Sbjct: 368 S*CMT*TSYSTVASPVVKSSQWVRSSAYPRAKRNAPVPPTTGSSRTASSGQLRPSSASVL 547
Query: 337 PLCSPAVNTKSITMRRPNVCWSANV*VPWARPTSVPAARVGPVVSGSSM 483
PL SPAVNT+ + R+P++ WS + PWARPT+ GP VSGSS+
Sbjct: 548 PL*SPAVNTRFMAWRKPSLAWSDPMYRPWARPTTALELCSGPSVSGSSI 694
>gb|CW137855.1|CW137855 104_525_11119892_148_34873_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11119892, DNA
sequence
Length = 535
Score = 65.7 bits (137), Expect(3) = 1e-025
Identities = 30/37 (81%), Positives = 32/37 (86%)
Frame = +3 / -3
Query: 1050 KSGLP*QG*NTGLSRIHFRLKGLRREVRAPHLEM*SS 1160
K LP*QG*NTGLSRIHFR KGL++EV APHLE *SS
Sbjct: 128 KFKLP*QG*NTGLSRIHFRSKGLQKEVLAPHLET*SS 18
Score = 63.8 bits (133), Expect(3) = 2e-021
Identities = 26/30 (86%), Positives = 28/30 (93%)
Frame = -2 / +1
Query: 1159 EDYISR*GARTSLRKPFNLKCILDKPVF*P 1070
EDY+SR*GARTS KPF+LKCILDKPVF*P
Sbjct: 19 EDYVSR*GARTSFCKPFDLKCILDKPVF*P 108
Score = 62.5 bits (130), Expect(3) = 1e-025
Identities = 26/36 (72%), Positives = 28/36 (77%)
Frame = +1 / -3
Query: 790 LANNSCPRQQVHLWLQRYIHKQHNSRXGFSHHSTSS 897
LAN+SCPRQQVHLWLQR I QHNS+ H STSS
Sbjct: 512 LANDSCPRQQVHLWLQRSIRVQHNSKVISYHPSTSS 405
Score = 60.6 bits (126), Expect(3) = 6e-021
Identities = 27/32 (84%), Positives = 29/32 (90%)
Frame = +1 / -1
Query: 1066 SRVKILAYQGYTLD*KACEEKFELLILRCSPL 1161
SRVKILAYQGYTLD KAC++KF LLILR SPL
Sbjct: 112 SRVKILAYQGYTLDRKACKKKF*LLILRRSPL 17
Score = 53.3 bits (110), Expect(3) = 6e-021
Identities = 24/35 (68%), Positives = 26/35 (74%)
Frame = +2 / -1
Query: 788 I*LIILVRDSKFTCGYNGTFTNNTIVGGGFPTIPH 892
I*L+ILVRDSKFT GYNG F NTIV T+PH
Sbjct: 514 I*LMILVRDSKFTYGYNGPFAYNTIVRLSVITLPH 410
Score = 48.3 bits (99), Expect(3) = 2e-021
Identities = 25/35 (71%), Positives = 26/35 (74%)
Frame = -3 / +3
Query: 891 CGMVGKPPPTIVLFVNVPL*PQVNLLSRTRIIS*I 787
CG V TIVL+ N PL*P VNLLSRTRIIS*I
Sbjct: 411 CGRVITDNLTIVLYANGPL*P*VNLLSRTRIIS*I 515
Score = 34.1 bits (68), Expect(3) = 2e-021
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = -1 / +1
Query: 1001 IVSKCKEIPLLVCIIT 954
IV KCKEIPLL+CII+
Sbjct: 340 IVLKCKEIPLLLCIIS 387
Score = 32.7 bits (65), Expect(3) = 1e-025
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +1 / -3
Query: 955 VMIQTSNGISLHFETI 1002
+MIQ SNGISLHF TI
Sbjct: 386 LMIQRSNGISLHFNTI 339
Score = 30.9 bits (61), Expect(3) = 6e-021
Identities = 12/18 (66%), Positives = 17/18 (94%)
Frame = +3 / -2
Query: 954 SYDTDK*RDLLALRNYKE 1007
+YDT+K*RDLLAL +Y++
Sbjct: 387 TYDTEK*RDLLAL*HYRK 334
>gb|CL178310.1|CL178310 104_386_10894490_148_31911_170 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10894490, DNA
sequence
Length = 699
Score = 65.7 bits (137), Expect(3) = 2e-025
Identities = 30/37 (81%), Positives = 32/37 (86%)
Frame = +3 / -2
Query: 1050 KSGLP*QG*NTGLSRIHFRLKGLRREVRAPHLEM*SS 1160
K LP*QG*NTGLSRIHFR KGL++EV APHLE *SS
Sbjct: 197 KFKLP*QG*NTGLSRIHFRSKGLQKEVLAPHLET*SS 87
Score = 63.8 bits (133), Expect(4) = 4e-022
Identities = 26/30 (86%), Positives = 28/30 (93%)
Frame = -2 / +1
Query: 1159 EDYISR*GARTSLRKPFNLKCILDKPVF*P 1070
EDY+SR*GARTS KPF+LKCILDKPVF*P
Sbjct: 88 EDYVSR*GARTSFCKPFDLKCILDKPVF*P 177
Score = 62.5 bits (130), Expect(3) = 2e-025
Identities = 26/36 (72%), Positives = 28/36 (77%)
Frame = +1 / -2
Query: 790 LANNSCPRQQVHLWLQRYIHKQHNSRXGFSHHSTSS 897
LAN+SCPRQQVHLWLQR I QHNS+ H STSS
Sbjct: 581 LANDSCPRQQVHLWLQRSIRVQHNSKVISYHPSTSS 474
Score = 48.3 bits (99), Expect(4) = 4e-022
Identities = 25/35 (71%), Positives = 26/35 (74%)
Frame = -3 / +3
Query: 891 CGMVGKPPPTIVLFVNVPL*PQVNLLSRTRIIS*I 787
CG V TIVL+ N PL*P VNLLSRTRIIS*I
Sbjct: 480 CGRVITDNLTIVLYANGPL*P*VNLLSRTRIIS*I 584
Score = 34.1 bits (68), Expect(4) = 4e-022
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = -1 / +1
Query: 1001 IVSKCKEIPLLVCIIT 954
IV KCKEIPLL+CII+
Sbjct: 409 IVLKCKEIPLLLCIIS 456
Score = 32.7 bits (65), Expect(3) = 2e-025
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +1 / -2
Query: 955 VMIQTSNGISLHFETI 1002
+MIQ SNGISLHF TI
Sbjct: 455 LMIQRSNGISLHFNTI 408
Score = 21.7 bits (41), Expect(4) = 4e-022
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -1 / +1
Query: 773 LLTSWI*YSFFNY 735
L SWI YSF Y
Sbjct: 574 LAKSWISYSFIRY 612
>gb|CW137854.1|CW137854 104_525_11119892_116_34877_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11119892, DNA
sequence
Length = 643
Score = 62.5 bits (130), Expect(3) = 4e-024
Identities = 26/36 (72%), Positives = 28/36 (77%)
Frame = +1 / +3
Query: 790 LANNSCPRQQVHLWLQRYIHKQHNSRXGFSHHSTSS 897
LAN+SCPRQQVHLWLQR I QHNS+ H STSS
Sbjct: 144 LANDSCPRQQVHLWLQRSIRVQHNSKVISYHPSTSS 251
Score = 61.1 bits (127), Expect(3) = 4e-024
Identities = 28/37 (75%), Positives = 30/37 (81%)
Frame = +3 / +3
Query: 1050 KSGLP*QG*NTGLSRIHFRLKGLRREVRAPHLEM*SS 1160
K LP*QG*NTG RIHFR KGL++EV APHLE *SS
Sbjct: 528 KFKLP*QG*NTGFIRIHFRSKGLQKEVLAPHLET*SS 638
Score = 59.7 bits (124), Expect(4) = 5e-021
Identities = 25/30 (83%), Positives = 27/30 (90%)
Frame = -2 / -1
Query: 1159 EDYISR*GARTSLRKPFNLKCILDKPVF*P 1070
EDY+SR*GARTS KPF+LKCIL KPVF*P
Sbjct: 637 EDYVSR*GARTSFCKPFDLKCILIKPVF*P 548
Score = 48.3 bits (99), Expect(4) = 5e-021
Identities = 25/35 (71%), Positives = 26/35 (74%)
Frame = -3 / -3
Query: 891 CGMVGKPPPTIVLFVNVPL*PQVNLLSRTRIIS*I 787
CG V TIVL+ N PL*P VNLLSRTRIIS*I
Sbjct: 245 CGRVITDNLTIVLYANGPL*P*VNLLSRTRIIS*I 141
Score = 34.1 bits (68), Expect(4) = 5e-021
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = -1 / -1
Query: 1001 IVSKCKEIPLLVCIIT 954
IV KCKEIPLL+CII+
Sbjct: 316 IVLKCKEIPLLLCIIS 269
Score = 32.7 bits (65), Expect(3) = 4e-024
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +1 / +3
Query: 955 VMIQTSNGISLHFETI 1002
+MIQ SNGISLHF TI
Sbjct: 270 LMIQRSNGISLHFNTI 317
Score = 21.7 bits (41), Expect(4) = 5e-021
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -1 / -1
Query: 773 LLTSWI*YSFFNY 735
L SWI YSF Y
Sbjct: 151 LAKSWISYSFIRY 113
>gb|CL150235.1|CL150235 104_331_10778376_116_31356_312 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10778376, DNA
sequence
Length = 662
Score = 85.8 bits (181), Expect(2) = 3e-022
Identities = 35/81 (43%), Positives = 49/81 (60%)
Frame = -1 / +3
Query: 476 DPLTTGPTRAAGTEVGRAQGTYTFADQQTFGLLMVMDFVFTAGEHKGSTLSILGRXEVLS 297
D T + E+GR QG Y A Q L++ + + T+G H GSTL+++GR +
Sbjct: 288 DDPVTATSSPTSAELGRMQGIYMLASQSGAALMVCANLLLTSGAHNGSTLALMGRDDTGE 467
Query: 296 DVREMSIVGGSGKFRMARGYV 234
DVRE+ +VGG+G FRMA GYV
Sbjct: 468 DVREIPVVGGTGTFRMATGYV 530
Score = 41.8 bits (85), Expect(2) = 3e-022
Identities = 13/40 (32%), Positives = 26/40 (65%)
Frame = -1 / +3
Query: 614 DDSGFTTFKVFFHDIVAGTSPTAIRIAQGAASNTSSTSFG 495
D +G T +F HDI +G++PTA+++ +G + ++ + G
Sbjct: 141 DSNGTTHLSLFMHDITSGSNPTAVKVIKGPGTTLTAPTLG 260
>gb|AW745074.1|AW745074 LG1_386_D11.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 661
Score = 85.8 bits (181), Expect(2) = 3e-022
Identities = 35/81 (43%), Positives = 49/81 (60%)
Frame = -1 / +3
Query: 476 DPLTTGPTRAAGTEVGRAQGTYTFADQQTFGLLMVMDFVFTAGEHKGSTLSILGRXEVLS 297
D T + E+GR QG Y A Q L++ + + T+G H GSTL+++GR +
Sbjct: 318 DDPVTATSSPTSAELGRMQGIYMLASQSGAALMVCANLLLTSGAHNGSTLALMGRDDTGE 497
Query: 296 DVREMSIVGGSGKFRMARGYV 234
DVRE+ +VGG+G FRMA GYV
Sbjct: 498 DVREIPVVGGTGTFRMATGYV 560
Score = 41.8 bits (85), Expect(2) = 3e-022
Identities = 13/40 (32%), Positives = 26/40 (65%)
Frame = -1 / +3
Query: 614 DDSGFTTFKVFFHDIVAGTSPTAIRIAQGAASNTSSTSFG 495
D +G T +F HDI +G++PTA+++ +G + ++ + G
Sbjct: 171 DSNGTTHLSLFMHDITSGSNPTAVKVIKGPGTTLTAPTLG 290
>gb|CW347588.1|CW347588 fsbb001f007i23k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f007i23, DNA
sequence
Length = 849
Score = 62.5 bits (130), Expect(3) = 7e-021
Identities = 26/36 (72%), Positives = 28/36 (77%)
Frame = +1 / -2
Query: 790 LANNSCPRQQVHLWLQRYIHKQHNSRXGFSHHSTSS 897
LAN+SCPRQQVHLWLQR I QHNS+ H STSS
Sbjct: 473 LANDSCPRQQVHLWLQRSIRVQHNSKVISYHPSTSS 366
Score = 51.0 bits (105), Expect(3) = 7e-021
Identities = 23/29 (79%), Positives = 25/29 (86%)
Frame = +3 / -2
Query: 1050 KSGLP*QG*NTGLSRIHFRLKGLRREVRA 1136
K LP*QG*NTGLSRIHFR KGL++EV A
Sbjct: 89 KFKLP*QG*NTGLSRIHFRSKGLQKEVLA 3
Score = 32.7 bits (65), Expect(3) = 7e-021
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +1 / -2
Query: 955 VMIQTSNGISLHFETI 1002
+MIQ SNGISLHF TI
Sbjct: 347 LMIQRSNGISLHFNTI 300
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,268,321,906
Number of Sequences: 832831
Number of extensions: 15840161
Number of successful extensions: 109054
Number of sequences better than 1.0e-020: 17
length of database: 163,786,556
effective HSP length: 56
effective length of database: 117,148,020
effective search space used: 49905056520
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)