TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3276099.2.1
(545 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX607496.1|CX607496 ANR1_29_C02.b1_A002 Anaerobic roots ... 238 3e-083
gb|BG323037.1|BG323037 EM1_14_B08.g1_A002 Embryo 1 (EM1) So... 229 1e-080
gb|CB928637.1|CB928637 ABA1_17_D11.b1_A012 Abscisic acid-tr... 241 3e-079
gb|CW278889.1|CW278889 104_753_11406787_116_35425_072 Sorgh... 163 5e-061
gb|BF421120.1|BF421120 FM1_6_F04.g1_A003 Floral-Induced Mer... 134 2e-053
gb|BF586901.1|BF586901 FM1_31_H03.g1_A003 Floral-Induced Me... 107 1e-045
>gb|CX607496.1|CX607496 ANR1_29_C02.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_29_C02_A002 3', mRNA sequence
Length = 742
Score = 238 bits (514), Expect(4) = 3e-083
Identities = 101/110 (91%), Positives = 105/110 (95%)
Frame = +3 / +2
Query: 3 FDNGSGEGIDRSHFQALVHFYGCKLQVQERMTRQIAEAVYSVSHNGAMVVVEANHICMIS 182
F+NGSGEGIDRSHFQALVHFYGCKLQVQERMTRQIAEAVYSVSHNGAMVVVEANHICMIS
Sbjct: 32 FENGSGEGIDRSHFQALVHFYGCKLQVQERMTRQIAEAVYSVSHNGAMVVVEANHICMIS 211
Query: 183 RGIEKIRSNTATIAVLGQFLADPSAKACFLQNVLDSVGSAV*IVSQAAKK 332
RGIEKIRSNTATIAVLGQFL DPSAKACFLQNVLD+ GSA+*+VS KK
Sbjct: 212 RGIEKIRSNTATIAVLGQFLTDPSAKACFLQNVLDTAGSAI*MVSLTEKK 361
Score = 237 bits (512), Expect(4) = 5e-080
Identities = 93/110 (84%), Positives = 100/110 (90%)
Frame = +2 / +1
Query: 2 L*QWKRRRH*SVAFSGVGSFLRVQASGSRKDDKADS*SGLFGFAQWGHGRC*GQPHLHDL 181
L*+WKRRRH*SVAFSG+GSFL VQASGSRKDDKADS*S LF F WGHGRC*GQPHLHDL
Sbjct: 31 L*KWKRRRH*SVAFSGIGSFLWVQASGSRKDDKADS*SSLFSFT*WGHGRC*GQPHLHDL 210
Query: 182 KGDRENKEQHGNNCSFGPVFGRPFCQGVLLTECFGFCWFCGMNRIASSKE 331
KGDRENKEQHGNNCSFGPVF RPFCQG+LLTECFG+ WFC MN IA+ ++
Sbjct: 211 KGDRENKEQHGNNCSFGPVFDRPFCQGMLLTECFGYSWFCDMNGIANREK 360
Score = 233 bits (504), Expect(4) = 1e-081
Identities = 102/110 (92%), Positives = 103/110 (93%)
Frame = -2 / -2
Query: 331 FFAACDTIHTAEPTESKTFCKKHALAEGSAKNWPKTAIVAVLLLIFSIPLEIMQMWLAST 152
FF+ DTIH AEP SKTFCKKHALAEGS KNWPKTAIVAVLLLIFSIPLEIMQMWLAST
Sbjct: 360 FFSVSDTIHIAEPAVSKTFCKKHALAEGSVKNWPKTAIVAVLLLIFSIPLEIMQMWLAST 181
Query: 151 TTMAPLCETE*TASAICLVILS*T*SLHP*K*TNA*KCDRSMPSPLPLSK 2
TTMAPLCETE*TASAICLVILS*T*SLHP*K*TNA*KCDRSMPSPLP SK
Sbjct: 180 TTMAPLCETE*TASAICLVILS*T*SLHP*K*TNA*KCDRSMPSPLPFSK 31
Score = 230 bits (496), Expect(3) = 3e-077
Identities = 96/110 (87%), Positives = 99/110 (90%)
Frame = -1 / -1
Query: 332 FLCCLRYDSYRRTNRIQNIL*EARLGRRVGQKLAQNCNCCRVAPYFLYPP*DHANVVGLN 153
F C RY SYRRT+ IQNIL*EA LGRRVGQKLAQNCNCCRVAPYFLYPP*DHANVVGLN
Sbjct: 361 FFLC*RYHSYRRTSCIQNIL*EACLGRRVGQKLAQNCNCCRVAPYFLYPP*DHANVVGLN 182
Query: 152 NDHGPIVRNRINRFSYLPCHPFLNLKLAPVEMNQRLKMRPINAFSASIVK 3
NDHGPI+ N IN FSYLPCHPFLNLKLAP+EMNQ LKMRPINAFSASI K
Sbjct: 181 NDHGPIM*N*INCFSYLPCHPFLNLKLAPIEMNQCLKMRPINAFSASIFK 32
Score = 221 bits (476), Expect(3) = 1e-067
Identities = 96/110 (87%), Positives = 100/110 (90%)
Frame = +1 / +3
Query: 1 TLTMEAEKALIGRIFRRWFISTGASFRFKKG*QGR*LKRFIRFRTMGPWSLLRPTTFA*S 180
TL MEAEKALIGRIFR WFIS GASFRFKKG*QGR*LK+FI+F MGPWSLLRPTTFA*S
Sbjct: 30 TLKMEAEKALIGRIFRHWFISMGASFRFKKG*QGR*LKQFIQFHIMGPWSLLRPTTFA*S 209
Query: 181 QGG*RK*GATRQQLQFWASFWPTLLPRRASYRMFWILLVLRYESYRKQQR 330
QGG*RK*GATRQQLQFWASF PTLLPR ASYRMFWI LVLRYE YR Q++
Sbjct: 210 QGG*RK*GATRQQLQFWASF*PTLLPRHASYRMFWIQLVLRYEWYR*QRK 359
Score = 128 bits (275), Expect(5) = 4e-061
Identities = 50/57 (87%), Positives = 50/57 (87%)
Frame = -3 / -3
Query: 171 KCGWPQQRPWPHCAKPNKPLQLSALSSFLEPEACTRRNEPTPENATDQCLLRFHCQS 1
KCGWPQQRPWPH K NK LQLSALSSFLEPEACT RNEP PENATDQCLLRFH QS
Sbjct: 200 KCGWPQQRPWPHYVKLNKLLQLSALSSFLEPEACTHRNEPMPENATDQCLLRFHFQS 30
Score = 73.0 bits (153), Expect(3) = 3e-077
Identities = 29/45 (64%), Positives = 32/45 (71%)
Frame = -2 / -1
Query: 532 YYYFFFI*SALQVTWYNTREPKPFWCFLVTSSVQSHR*QICTREE 398
YY F F + WY TREPKP WCFL+TSSVQS R*+ CTREE
Sbjct: 583 YYSFLF*SAVQVTWWYKTREPKPCWCFLLTSSVQSSR*KFCTREE 449
Score = 65.7 bits (137), Expect(5) = 4e-061
Identities = 27/33 (81%), Positives = 27/33 (81%)
Frame = -3 / -3
Query: 324 LLAIRFIPQNQQNPKHSVRSTPWQKGRPKTGPK 226
LLAI FI QNQ PKHSVRS PWQKGR KTGPK
Sbjct: 353 LLAIPFISQNQLYPKHSVRSMPWQKGRSKTGPK 255
Score = 63.8 bits (133), Expect(4) = 3e-083
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = +3 / +3
Query: 399 SSRVQICHLWDCTEDVTRKHQKGFGSLVLYH 491
SSRVQ HL DCTEDV RKHQ+GFGSLVLYH
Sbjct: 450 SSRVQNFHLEDCTEDVRRKHQQGFGSLVLYH 542
Score = 58.8 bits (122), Expect(4) = 5e-080
Identities = 22/30 (73%), Positives = 24/30 (80%)
Frame = +2 / +2
Query: 401 FSGANLSPVGLYRGCHKKAPKGFWFSRVVP 490
FSGA SP L+RGC KKAP GFWFSR+VP
Sbjct: 452 FSGAKFSPGRLHRGCQKKAPTGFWFSRLVP 541
Score = 55.1 bits (114), Expect(4) = 1e-081
Identities = 22/31 (70%), Positives = 24/31 (77%)
Frame = -3 / -2
Query: 489 GTTRENQNPFGAFL*HPRYSPTGDKFAPEKN 397
GT RENQNP GAF *HPR S G+ FAPEK+
Sbjct: 540 GTRRENQNPVGAFF*HPRCSLPGENFAPEKS 448
Score = 52.4 bits (108), Expect(3) = 1e-067
Identities = 22/30 (73%), Positives = 23/30 (76%)
Frame = +1 / +1
Query: 400 LLGCKFVTCGTVPRMSQESTKRVLVLSCCT 489
LLGCK T T PRMS+EST RVLVLS CT
Sbjct: 451 LLGCKIFTWKTAPRMSEESTNRVLVLSSCT 540
Score = 51.9 bits (107), Expect(5) = 4e-061
Identities = 24/31 (77%), Positives = 25/31 (80%)
Frame = -1 / -3
Query: 491 MVQHERTKTLLVLSCDILGTVPQVTNLHPRR 399
+VQ ERTKTLLVLS DILG V QV LHPRR
Sbjct: 542 VVQDERTKTLLVLSSDILGAVFQVKILHPRR 450
Score = 42.3 bits (86), Expect(4) = 1e-081
Identities = 18/22 (81%), Positives = 18/22 (81%)
Frame = -3 / -2
Query: 543 TVVTITISFLFEVPYK*HGTTR 478
TVVT TI F FEVPYK*HG TR
Sbjct: 597 TVVTTTILFYFEVPYK*HGGTR 532
Score = 40.9 bits (83), Expect(5) = 4e-061
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = -2 / -1
Query: 544 YSCNYYYFFFI*SALQVTWY 485
+SCNYYY F *SA+QVTW+
Sbjct: 598 HSCNYYYSFLF*SAVQVTWW 539
Score = 35.4 bits (71), Expect(4) = 3e-083
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = +2 / +2
Query: 482 VVPCHL*GTSNKKEIVIVTTV 544
V PCHL GTS K IV+VTTV
Sbjct: 536 VPPCHLYGTSK*KRIVVVTTV 598
Score = 32.7 bits (65), Expect(4) = 5e-080
Identities = 15/22 (68%), Positives = 19/22 (86%)
Frame = +3 / +3
Query: 477 LVLYHVTCKALQIKKK***LQL 542
++ +HVTC ALQ KK+***LQL
Sbjct: 531 VLYHHVTCTALQNKKE***LQL 596
Score = 30.9 bits (61), Expect(4) = 1e-081
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1 / -3
Query: 398 IMLDQ*IAKNFNCWIVLPTRHFF 330
IML Q*I ++ +CWIV P F
Sbjct: 425 IMLGQ*IGRHCHCWIVTPKHTIF 357
Score = 29.9 bits (59), Expect(4) = 3e-083
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1 / +1
Query: 325 QRKKCLVGSTIQQLKFLAIYWSSMI 399
+ K +G TIQQ + L IYW SMI
Sbjct: 352 REKIVCLGVTIQQWQCLPIYWPSMI 426
Score = 27.6 bits (54), Expect(4) = 5e-080
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3 / +3
Query: 351 YYPAIEIFSNLLV*HD 398
YYPA+ + +NLL *HD
Sbjct: 378 YYPAMAMSANLLA*HD 425
Score = 25.8 bits (50), Expect(3) = 3e-077
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -3 / -2
Query: 399 NHARPVDC*KFQLLDS 352
NHARPVD LLDS
Sbjct: 426 NHARPVDWQTLPLLDS 379
Score = 23.5 bits (45), Expect(3) = 1e-067
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +2 / +2
Query: 350 VLSSN*NF*QSTGLA* 397
+LSSN N QSTGLA*
Sbjct: 377 LLSSNGNVCQSTGLA* 424
Score = 23.5 bits (45), Expect(5) = 4e-061
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2 / -1
Query: 397 SC*TSRLLKISIAG* 353
SC* SRL I+IAG*
Sbjct: 424 SC*ASRLADIAIAG* 380
>gb|BG323037.1|BG323037 EM1_14_B08.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 672
Score = 229 bits (495), Expect(4) = 1e-080
Identities = 90/106 (84%), Positives = 96/106 (90%)
Frame = +2 / +2
Query: 14 KRRRH*SVAFSGVGSFLRVQASGSRKDDKADS*SGLFGFAQWGHGRC*GQPHLHDLKGDR 193
KRRRH*SVAFSG+GSFL VQASGSRKDDKADS*S LF F WGHGRC*GQPHLHDLKGDR
Sbjct: 2 KRRRH*SVAFSGIGSFLWVQASGSRKDDKADS*SSLFSFT*WGHGRC*GQPHLHDLKGDR 181
Query: 194 ENKEQHGNNCSFGPVFGRPFCQGVLLTECFGFCWFCGMNRIASSKE 331
ENKEQHGNNCSFGPVF RPFCQG+LLTECFG+ WFC MN IA+ ++
Sbjct: 182 ENKEQHGNNCSFGPVFDRPFCQGMLLTECFGYSWFCDMNGIANREK 319
Score = 229 bits (494), Expect(4) = 3e-078
Identities = 98/106 (92%), Positives = 101/106 (95%)
Frame = +3 / +3
Query: 15 SGEGIDRSHFQALVHFYGCKLQVQERMTRQIAEAVYSVSHNGAMVVVEANHICMISRGIE 194
SGEGIDRSHFQALVHFYGCKLQVQERMTRQIAEAVYSVSHNGAMVVVEANHICMISRGIE
Sbjct: 3 SGEGIDRSHFQALVHFYGCKLQVQERMTRQIAEAVYSVSHNGAMVVVEANHICMISRGIE 182
Query: 195 KIRSNTATIAVLGQFLADPSAKACFLQNVLDSVGSAV*IVSQAAKK 332
KIRSNTATIAVLGQFL DPSAKACFLQNVLD+ GSA+*+VS KK
Sbjct: 183 KIRSNTATIAVLGQFLTDPSAKACFLQNVLDTAGSAI*MVSLTEKK 320
Score = 226 bits (488), Expect(4) = 1e-080
Identities = 99/106 (93%), Positives = 100/106 (94%)
Frame = -2 / -3
Query: 331 FFAACDTIHTAEPTESKTFCKKHALAEGSAKNWPKTAIVAVLLLIFSIPLEIMQMWLAST 152
FF+ DTIH AEP SKTFCKKHALAEGS KNWPKTAIVAVLLLIFSIPLEIMQMWLAST
Sbjct: 319 FFSVSDTIHIAEPAVSKTFCKKHALAEGSVKNWPKTAIVAVLLLIFSIPLEIMQMWLAST 140
Query: 151 TTMAPLCETE*TASAICLVILS*T*SLHP*K*TNA*KCDRSMPSPL 14
TTMAPLCETE*TASAICLVILS*T*SLHP*K*TNA*KCDRSMPSPL
Sbjct: 139 TTMAPLCETE*TASAICLVILS*T*SLHP*K*TNA*KCDRSMPSPL 2
Score = 224 bits (484), Expect(4) = 1e-076
Identities = 93/106 (87%), Positives = 96/106 (90%)
Frame = -1 / -2
Query: 332 FLCCLRYDSYRRTNRIQNIL*EARLGRRVGQKLAQNCNCCRVAPYFLYPP*DHANVVGLN 153
F C RY SYRRT+ IQNIL*EA LGRRVGQKLAQNCNCCRVAPYFLYPP*DHANVVGLN
Sbjct: 320 FFLC*RYHSYRRTSCIQNIL*EACLGRRVGQKLAQNCNCCRVAPYFLYPP*DHANVVGLN 141
Query: 152 NDHGPIVRNRINRFSYLPCHPFLNLKLAPVEMNQRLKMRPINAFSA 15
NDHGPI+ N IN FSYLPCHPFLNLKLAP+EMNQ LKMRPINAFSA
Sbjct: 140 NDHGPIM*N*INCFSYLPCHPFLNLKLAPIEMNQCLKMRPINAFSA 3
Score = 215 bits (463), Expect(3) = 2e-066
Identities = 93/106 (87%), Positives = 97/106 (91%)
Frame = +1 / +1
Query: 13 EAEKALIGRIFRRWFISTGASFRFKKG*QGR*LKRFIRFRTMGPWSLLRPTTFA*SQGG* 192
EAEKALIGRIFR WFIS GASFRFKKG*QGR*LK+FI+F MGPWSLLRPTTFA*SQGG*
Sbjct: 1 EAEKALIGRIFRHWFISMGASFRFKKG*QGR*LKQFIQFHIMGPWSLLRPTTFA*SQGG* 180
Query: 193 RK*GATRQQLQFWASFWPTLLPRRASYRMFWILLVLRYESYRKQQR 330
RK*GATRQQLQFWASF PTLLPR ASYRMFWI LVLRYE YR Q++
Sbjct: 181 RK*GATRQQLQFWASF*PTLLPRHASYRMFWIQLVLRYEWYR*QRK 318
Score = 122 bits (260), Expect(4) = 1e-058
Identities = 47/53 (88%), Positives = 47/53 (88%)
Frame = -3 / -1
Query: 171 KCGWPQQRPWPHCAKPNKPLQLSALSSFLEPEACTRRNEPTPENATDQCLLRF 13
KCGWPQQRPWPH K NK LQLSALSSFLEPEACT RNEP PENATDQCLLRF
Sbjct: 159 KCGWPQQRPWPHYVKLNKLLQLSALSSFLEPEACTHRNEPMPENATDQCLLRF 1
Score = 73.0 bits (153), Expect(4) = 1e-058
Identities = 29/45 (64%), Positives = 32/45 (71%)
Frame = -2 / -2
Query: 532 YYYFFFI*SALQVTWYNTREPKPFWCFLVTSSVQSHR*QICTREE 398
YY F F + WY TREPKP WCFL+TSSVQS R*+ CTREE
Sbjct: 542 YYSFLF*SAVQVTWWYKTREPKPCWCFLLTSSVQSSR*KFCTREE 408
Score = 65.7 bits (137), Expect(4) = 1e-058
Identities = 27/33 (81%), Positives = 27/33 (81%)
Frame = -3 / -1
Query: 324 LLAIRFIPQNQQNPKHSVRSTPWQKGRPKTGPK 226
LLAI FI QNQ PKHSVRS PWQKGR KTGPK
Sbjct: 312 LLAIPFISQNQLYPKHSVRSMPWQKGRSKTGPK 214
Score = 63.8 bits (133), Expect(4) = 1e-080
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = +3 / +1
Query: 399 SSRVQICHLWDCTEDVTRKHQKGFGSLVLYH 491
SSRVQ HL DCTEDV RKHQ+GFGSLVLYH
Sbjct: 409 SSRVQNFHLEDCTEDVRRKHQQGFGSLVLYH 501
Score = 61.1 bits (127), Expect(4) = 3e-078
Identities = 23/30 (76%), Positives = 24/30 (80%)
Frame = +2 / +3
Query: 401 FSGANLSPVGLYRGCHKKAPKGFWFSRVVP 490
FSGA SP LYRGC KKAP GFWFSR+VP
Sbjct: 411 FSGAKFSPGRLYRGCQKKAPTGFWFSRLVP 500
Score = 59.3 bits (123), Expect(4) = 1e-080
Identities = 23/31 (74%), Positives = 25/31 (80%)
Frame = -3 / -3
Query: 489 GTTRENQNPFGAFL*HPRYSPTGDKFAPEKN 397
GT RENQNP GAF *HPRYS G+ FAPEK+
Sbjct: 499 GTRRENQNPVGAFF*HPRYSLPGENFAPEKS 407
Score = 54.2 bits (112), Expect(3) = 2e-066
Identities = 23/30 (76%), Positives = 24/30 (80%)
Frame = +1 / +2
Query: 400 LLGCKFVTCGTVPRMSQESTKRVLVLSCCT 489
LLGCK T TVPRMS+EST RVLVLS CT
Sbjct: 410 LLGCKIFTWKTVPRMSEESTNRVLVLSSCT 499
Score = 54.2 bits (112), Expect(4) = 1e-076
Identities = 25/31 (80%), Positives = 26/31 (83%)
Frame = -1 / -1
Query: 491 MVQHERTKTLLVLSCDILGTVPQVTNLHPRR 399
+VQ ERTKTLLVLS DILGTV QV LHPRR
Sbjct: 501 VVQDERTKTLLVLSSDILGTVFQVKILHPRR 409
Score = 42.3 bits (86), Expect(4) = 1e-080
Identities = 18/22 (81%), Positives = 18/22 (81%)
Frame = -3 / -3
Query: 543 TVVTITISFLFEVPYK*HGTTR 478
TVVT TI F FEVPYK*HG TR
Sbjct: 556 TVVTTTILFYFEVPYK*HGGTR 491
Score = 40.9 bits (83), Expect(4) = 1e-076
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = -2 / -2
Query: 544 YSCNYYYFFFI*SALQVTWY 485
+SCNYYY F *SA+QVTW+
Sbjct: 557 HSCNYYYSFLF*SAVQVTWW 498
Score = 35.4 bits (71), Expect(4) = 1e-080
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = +2 / +3
Query: 482 VVPCHL*GTSNKKEIVIVTTV 544
V PCHL GTS K IV+VTTV
Sbjct: 495 VPPCHLYGTSK*KRIVVVTTV 557
Score = 32.7 bits (65), Expect(4) = 3e-078
Identities = 15/22 (68%), Positives = 19/22 (86%)
Frame = +3 / +1
Query: 477 LVLYHVTCKALQIKKK***LQL 542
++ +HVTC ALQ KK+***LQL
Sbjct: 490 VLYHHVTCTALQNKKE***LQL 555
Score = 30.9 bits (61), Expect(4) = 1e-080
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1 / -1
Query: 398 IMLDQ*IAKNFNCWIVLPTRHFF 330
IML Q*I ++ +CWIV P F
Sbjct: 384 IMLGQ*IGRHCHCWIVTPKHTIF 316
Score = 29.9 bits (59), Expect(4) = 1e-080
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1 / +2
Query: 325 QRKKCLVGSTIQQLKFLAIYWSSMI 399
+ K +G TIQQ + L IYW SMI
Sbjct: 311 REKIVCLGVTIQQWQCLPIYWPSMI 385
Score = 27.6 bits (54), Expect(4) = 3e-078
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3 / +1
Query: 351 YYPAIEIFSNLLV*HD 398
YYPA+ + +NLL *HD
Sbjct: 337 YYPAMAMSANLLA*HD 384
Score = 25.8 bits (50), Expect(4) = 1e-076
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -3 / -3
Query: 399 NHARPVDC*KFQLLDS 352
NHARPVD LLDS
Sbjct: 385 NHARPVDWQTLPLLDS 338
Score = 23.5 bits (45), Expect(3) = 2e-066
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +2 / +3
Query: 350 VLSSN*NF*QSTGLA* 397
+LSSN N QSTGLA*
Sbjct: 336 LLSSNGNVCQSTGLA* 383
Score = 23.5 bits (45), Expect(4) = 1e-058
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2 / -2
Query: 397 SC*TSRLLKISIAG* 353
SC* SRL I+IAG*
Sbjct: 383 SC*ASRLADIAIAG* 339
>gb|CB928637.1|CB928637 ABA1_17_D11.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_17_D11_A012 3', mRNA sequence
Length = 722
Score = 241 bits (521), Expect(3) = 3e-079
Identities = 94/110 (85%), Positives = 101/110 (91%)
Frame = +2 / +2
Query: 2 L*QWKRRRH*SVAFSGVGSFLRVQASGSRKDDKADS*SGLFGFAQWGHGRC*GQPHLHDL 181
L*+WKRRRH*SVAFSG+GSFL VQASGSRKDDKADS*S LF F QWGHGRC*GQPHLHDL
Sbjct: 191 L*KWKRRRH*SVAFSGIGSFLWVQASGSRKDDKADS*SSLFSFTQWGHGRC*GQPHLHDL 370
Query: 182 KGDRENKEQHGNNCSFGPVFGRPFCQGVLLTECFGFCWFCGMNRIASSKE 331
KGDRENKEQHGNNCSFGPVF RPFCQG+LLTECFG+ WFC MN IA+ ++
Sbjct: 371 KGDRENKEQHGNNCSFGPVFDRPFCQGMLLTECFGYSWFCDMNGIANREK 520
Score = 236 bits (509), Expect(3) = 5e-076
Identities = 100/110 (90%), Positives = 105/110 (95%)
Frame = +3 / +3
Query: 3 FDNGSGEGIDRSHFQALVHFYGCKLQVQERMTRQIAEAVYSVSHNGAMVVVEANHICMIS 182
F++GSGEGIDRSHFQALVHFYGCKLQVQERMTRQIAEAVYSVSHNGAMVVVEANHICMIS
Sbjct: 192 FESGSGEGIDRSHFQALVHFYGCKLQVQERMTRQIAEAVYSVSHNGAMVVVEANHICMIS 371
Query: 183 RGIEKIRSNTATIAVLGQFLADPSAKACFLQNVLDSVGSAV*IVSQAAKK 332
RGIEKIRSNTATIAVLGQFL DPSAKACFLQNVLD+ GSA+*+VS KK
Sbjct: 372 RGIEKIRSNTATIAVLGQFLTDPSAKACFLQNVLDTAGSAI*MVSLTEKK 521
Score = 235 bits (508), Expect(3) = 7e-079
Identities = 103/110 (93%), Positives = 104/110 (94%)
Frame = -2 / -2
Query: 331 FFAACDTIHTAEPTESKTFCKKHALAEGSAKNWPKTAIVAVLLLIFSIPLEIMQMWLAST 152
FF+ DTIH AEP SKTFCKKHALAEGS KNWPKTAIVAVLLLIFSIPLEIMQMWLAST
Sbjct: 520 FFSVSDTIHIAEPAVSKTFCKKHALAEGSVKNWPKTAIVAVLLLIFSIPLEIMQMWLAST 341
Query: 151 TTMAPLCETE*TASAICLVILS*T*SLHP*K*TNA*KCDRSMPSPLPLSK 2
TTMAPLCETE*TASAICLVILS*T*SLHP*K*TNA*KCDRSMPSPLPLSK
Sbjct: 340 TTMAPLCETE*TASAICLVILS*T*SLHP*K*TNA*KCDRSMPSPLPLSK 191
Score = 229 bits (494), Expect(3) = 7e-073
Identities = 96/110 (87%), Positives = 98/110 (89%)
Frame = -1 / -1
Query: 332 FLCCLRYDSYRRTNRIQNIL*EARLGRRVGQKLAQNCNCCRVAPYFLYPP*DHANVVGLN 153
F C RY SYRRT+ IQNIL*EA LGRRVGQKLAQNCNCCRVAPYFLYPP*DHANVVGLN
Sbjct: 521 FFLC*RYHSYRRTSCIQNIL*EACLGRRVGQKLAQNCNCCRVAPYFLYPP*DHANVVGLN 342
Query: 152 NDHGPIVRNRINRFSYLPCHPFLNLKLAPVEMNQRLKMRPINAFSASIVK 3
NDHGPIV N IN FSYLPCHPFLNLKLAP+EMNQ LKMRPINAFSAS K
Sbjct: 341 NDHGPIV*N*INCFSYLPCHPFLNLKLAPIEMNQCLKMRPINAFSASTFK 192
Score = 221 bits (478), Expect(3) = 2e-068
Identities = 96/110 (87%), Positives = 101/110 (91%)
Frame = +1 / +1
Query: 1 TLTMEAEKALIGRIFRRWFISTGASFRFKKG*QGR*LKRFIRFRTMGPWSLLRPTTFA*S 180
TL +EAEKALIGRIFR WFIS GASFRFKKG*QGR*LK+FI+F TMGPWSLLRPTTFA*S
Sbjct: 190 TLKVEAEKALIGRIFRHWFISMGASFRFKKG*QGR*LKQFIQFHTMGPWSLLRPTTFA*S 369
Query: 181 QGG*RK*GATRQQLQFWASFWPTLLPRRASYRMFWILLVLRYESYRKQQR 330
QGG*RK*GATRQQLQFWASF PTLLPR ASYRMFWI LVLRYE YR Q++
Sbjct: 370 QGG*RK*GATRQQLQFWASF*PTLLPRHASYRMFWIQLVLRYEWYR*QRK 519
Score = 133 bits (286), Expect(4) = 2e-056
Identities = 51/57 (89%), Positives = 51/57 (89%)
Frame = -3 / -3
Query: 171 KCGWPQQRPWPHCAKPNKPLQLSALSSFLEPEACTRRNEPTPENATDQCLLRFHCQS 1
KCGWPQQRPWPHC K NK LQLSALSSFLEPEACT RNEP PENATDQCLLRFH QS
Sbjct: 360 KCGWPQQRPWPHCVKLNKLLQLSALSSFLEPEACTHRNEPMPENATDQCLLRFHFQS 190
Score = 68.0 bits (142), Expect(3) = 7e-079
Identities = 25/31 (80%), Positives = 27/31 (87%)
Frame = -2 / -1
Query: 490 WYNTREPKPFWCFLVTSSVQSHR*QICTREE 398
WY TREPKP WCFL+TSSVQS R*+ CTREE
Sbjct: 701 WYKTREPKPCWCFLLTSSVQSSR*KFCTREE 609
Score = 65.7 bits (137), Expect(4) = 2e-056
Identities = 27/33 (81%), Positives = 27/33 (81%)
Frame = -3 / -3
Query: 324 LLAIRFIPQNQQNPKHSVRSTPWQKGRPKTGPK 226
LLAI FI QNQ PKHSVRS PWQKGR KTGPK
Sbjct: 513 LLAIPFISQNQLYPKHSVRSMPWQKGRSKTGPK 415
Score = 63.8 bits (133), Expect(3) = 3e-079
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = +3 / +1
Query: 399 SSRVQICHLWDCTEDVTRKHQKGFGSLVLYH 491
SSRVQ HL DCTEDV RKHQ+GFGSLVLYH
Sbjct: 610 SSRVQNFHLEDCTEDVRRKHQQGFGSLVLYH 702
Score = 61.1 bits (127), Expect(3) = 5e-076
Identities = 23/30 (76%), Positives = 24/30 (80%)
Frame = +2 / +3
Query: 401 FSGANLSPVGLYRGCHKKAPKGFWFSRVVP 490
FSGA SP LYRGC KKAP GFWFSR+VP
Sbjct: 612 FSGAKFSPGRLYRGCQKKAPTGFWFSRLVP 701
Score = 59.3 bits (123), Expect(3) = 7e-073
Identities = 23/31 (74%), Positives = 25/31 (80%)
Frame = -3 / -2
Query: 489 GTTRENQNPFGAFL*HPRYSPTGDKFAPEKN 397
GT RENQNP GAF *HPRYS G+ FAPEK+
Sbjct: 700 GTRRENQNPVGAFF*HPRYSLPGENFAPEKS 608
Score = 54.2 bits (112), Expect(3) = 2e-068
Identities = 23/30 (76%), Positives = 24/30 (80%)
Frame = +1 / +2
Query: 400 LLGCKFVTCGTVPRMSQESTKRVLVLSCCT 489
LLGCK T TVPRMS+EST RVLVLS CT
Sbjct: 611 LLGCKIFTWKTVPRMSEESTNRVLVLSSCT 700
Score = 54.2 bits (112), Expect(4) = 2e-056
Identities = 25/31 (80%), Positives = 26/31 (83%)
Frame = -1 / -3
Query: 491 MVQHERTKTLLVLSCDILGTVPQVTNLHPRR 399
+VQ ERTKTLLVLS DILGTV QV LHPRR
Sbjct: 702 VVQDERTKTLLVLSSDILGTVFQVKILHPRR 610
Score = 30.9 bits (61), Expect(3) = 7e-079
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1 / -3
Query: 398 IMLDQ*IAKNFNCWIVLPTRHFF 330
IML Q*I ++ +CWIV P F
Sbjct: 585 IMLGQ*IGRHCHCWIVTPKHTIF 517
Score = 29.9 bits (59), Expect(3) = 3e-079
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1 / +2
Query: 325 QRKKCLVGSTIQQLKFLAIYWSSMI 399
+ K +G TIQQ + L IYW SMI
Sbjct: 512 REKIVCLGVTIQQWQCLPIYWPSMI 586
Score = 27.6 bits (54), Expect(3) = 5e-076
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3 / +1
Query: 351 YYPAIEIFSNLLV*HD 398
YYPA+ + +NLL *HD
Sbjct: 538 YYPAMAMSANLLA*HD 585
Score = 25.8 bits (50), Expect(3) = 7e-073
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -3 / -2
Query: 399 NHARPVDC*KFQLLDS 352
NHARPVD LLDS
Sbjct: 586 NHARPVDWQTLPLLDS 539
Score = 23.5 bits (45), Expect(3) = 2e-068
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +2 / +3
Query: 350 VLSSN*NF*QSTGLA* 397
+LSSN N QSTGLA*
Sbjct: 537 LLSSNGNVCQSTGLA* 584
Score = 23.5 bits (45), Expect(4) = 2e-056
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2 / -1
Query: 397 SC*TSRLLKISIAG* 353
SC* SRL I+IAG*
Sbjct: 584 SC*ASRLADIAIAG* 540
>gb|CW278889.1|CW278889 104_753_11406787_116_35425_072 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11406787, DNA
sequence
Length = 711
Score = 163 bits (350), Expect(4) = 5e-061
Identities = 60/74 (81%), Positives = 65/74 (87%)
Frame = +2 / +1
Query: 110 *SGLFGFAQWGHGRC*GQPHLHDLKGDRENKEQHGNNCSFGPVFGRPFCQGVLLTECFGF 289
*S LF F WGHGRC*GQPHLHDLKGDRENKEQHGNNCSFGPVF RPFCQG+LLTECFG+
Sbjct: 1 *SSLFSFT*WGHGRC*GQPHLHDLKGDRENKEQHGNNCSFGPVFDRPFCQGMLLTECFGY 180
Query: 290 CWFCGMNRIASSKE 331
WFC MN IA+ ++
Sbjct: 181 SWFCDMNGIANREK 222
Score = 159 bits (342), Expect(4) = 7e-061
Identities = 67/74 (90%), Positives = 68/74 (91%)
Frame = -2 / -1
Query: 331 FFAACDTIHTAEPTESKTFCKKHALAEGSAKNWPKTAIVAVLLLIFSIPLEIMQMWLAST 152
FF+ DTIH AEP SKTFCKKHALAEGS KNWPKTAIVAVLLLIFSIPLEIMQMWLAST
Sbjct: 222 FFSVSDTIHIAEPAVSKTFCKKHALAEGSVKNWPKTAIVAVLLLIFSIPLEIMQMWLAST 43
Query: 151 TTMAPLCETE*TAS 110
TTMAPLCETE*TAS
Sbjct: 42 TTMAPLCETE*TAS 1
Score = 152 bits (326), Expect(4) = 2e-055
Identities = 66/74 (89%), Positives = 69/74 (93%)
Frame = +3 / +2
Query: 111 EAVYSVSHNGAMVVVEANHICMISRGIEKIRSNTATIAVLGQFLADPSAKACFLQNVLDS 290
EAVYSVSHNGAMVVVEANHICMISRGIEKIRSNTATIAVLGQFL DPSAKACFLQNVLD+
Sbjct: 2 EAVYSVSHNGAMVVVEANHICMISRGIEKIRSNTATIAVLGQFLTDPSAKACFLQNVLDT 181
Query: 291 VGSAV*IVSQAAKK 332
GSA+*+VS KK
Sbjct: 182 AGSAI*MVSLTEKK 223
Score = 150 bits (323), Expect(4) = 6e-055
Identities = 63/74 (85%), Positives = 65/74 (87%)
Frame = -1 / -3
Query: 332 FLCCLRYDSYRRTNRIQNIL*EARLGRRVGQKLAQNCNCCRVAPYFLYPP*DHANVVGLN 153
F C RY SYRRT+ IQNIL*EA LGRRVGQKLAQNCNCCRVAPYFLYPP*DHANVVGLN
Sbjct: 223 FFLC*RYHSYRRTSCIQNIL*EACLGRRVGQKLAQNCNCCRVAPYFLYPP*DHANVVGLN 44
Query: 152 NDHGPIVRNRINRF 111
NDHGPI+ N IN F
Sbjct: 43 NDHGPIM*N*INCF 2
Score = 146 bits (313), Expect(3) = 4e-046
Identities = 62/73 (84%), Positives = 66/73 (90%)
Frame = +1 / +3
Query: 112 KRFIRFRTMGPWSLLRPTTFA*SQGG*RK*GATRQQLQFWASFWPTLLPRRASYRMFWIL 291
K+FI+F MGPWSLLRPTTFA*SQGG*RK*GATRQQLQFWASF PTLLPR ASYRMFWI
Sbjct: 3 KQFIQFHIMGPWSLLRPTTFA*SQGG*RK*GATRQQLQFWASF*PTLLPRHASYRMFWIQ 182
Query: 292 LVLRYESYRKQQR 330
LVLRYE YR Q++
Sbjct: 183 LVLRYEWYR*QRK 221
Score = 73.0 bits (153), Expect(4) = 1e-036
Identities = 29/45 (64%), Positives = 32/45 (71%)
Frame = -2 / -3
Query: 532 YYYFFFI*SALQVTWYNTREPKPFWCFLVTSSVQSHR*QICTREE 398
YY F F + WY TREPKP WCFL+TSSVQS R*+ CTREE
Sbjct: 445 YYSFLF*SAVQVTWWYKTREPKPCWCFLLTSSVQSSR*KFCTREE 311
Score = 65.7 bits (137), Expect(4) = 1e-036
Identities = 27/33 (81%), Positives = 27/33 (81%)
Frame = -3 / -2
Query: 324 LLAIRFIPQNQQNPKHSVRSTPWQKGRPKTGPK 226
LLAI FI QNQ PKHSVRS PWQKGR KTGPK
Sbjct: 215 LLAIPFISQNQLYPKHSVRSMPWQKGRSKTGPK 117
Score = 63.8 bits (133), Expect(4) = 5e-061
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = +3 / +3
Query: 399 SSRVQICHLWDCTEDVTRKHQKGFGSLVLYH 491
SSRVQ HL DCTEDV RKHQ+GFGSLVLYH
Sbjct: 312 SSRVQNFHLEDCTEDVRRKHQQGFGSLVLYH 404
Score = 61.1 bits (127), Expect(4) = 2e-055
Identities = 23/30 (76%), Positives = 24/30 (80%)
Frame = +2 / +2
Query: 401 FSGANLSPVGLYRGCHKKAPKGFWFSRVVP 490
FSGA SP LYRGC KKAP GFWFSR+VP
Sbjct: 314 FSGAKFSPGRLYRGCQKKAPTGFWFSRLVP 403
Score = 59.3 bits (123), Expect(4) = 7e-061
Identities = 23/31 (74%), Positives = 25/31 (80%)
Frame = -3 / -1
Query: 489 GTTRENQNPFGAFL*HPRYSPTGDKFAPEKN 397
GT RENQNP GAF *HPRYS G+ FAPEK+
Sbjct: 402 GTRRENQNPVGAFF*HPRYSLPGENFAPEKS 310
Score = 54.2 bits (112), Expect(3) = 4e-046
Identities = 23/30 (76%), Positives = 24/30 (80%)
Frame = +1 / +1
Query: 400 LLGCKFVTCGTVPRMSQESTKRVLVLSCCT 489
LLGCK T TVPRMS+EST RVLVLS CT
Sbjct: 313 LLGCKIFTWKTVPRMSEESTNRVLVLSSCT 402
Score = 54.2 bits (112), Expect(4) = 6e-055
Identities = 25/31 (80%), Positives = 26/31 (83%)
Frame = -1 / -2
Query: 491 MVQHERTKTLLVLSCDILGTVPQVTNLHPRR 399
+VQ ERTKTLLVLS DILGTV QV LHPRR
Sbjct: 404 VVQDERTKTLLVLSSDILGTVFQVKILHPRR 312
Score = 47.8 bits (98), Expect(4) = 1e-036
Identities = 16/20 (80%), Positives = 16/20 (80%)
Frame = -3 / -2
Query: 171 KCGWPQQRPWPHCAKPNKPL 112
KCGWPQQRPWPH K NK L
Sbjct: 62 KCGWPQQRPWPHYVKLNKLL 3
Score = 42.3 bits (86), Expect(4) = 7e-061
Identities = 18/22 (81%), Positives = 18/22 (81%)
Frame = -3 / -1
Query: 543 TVVTITISFLFEVPYK*HGTTR 478
TVVT TI F FEVPYK*HG TR
Sbjct: 459 TVVTTTILFYFEVPYK*HGGTR 394
Score = 40.9 bits (83), Expect(4) = 6e-055
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = -2 / -3
Query: 544 YSCNYYYFFFI*SALQVTWY 485
+SCNYYY F *SA+QVTW+
Sbjct: 460 HSCNYYYSFLF*SAVQVTWW 401
Score = 35.4 bits (71), Expect(4) = 5e-061
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = +2 / +2
Query: 482 VVPCHL*GTSNKKEIVIVTTV 544
V PCHL GTS K IV+VTTV
Sbjct: 398 VPPCHLYGTSK*KRIVVVTTV 460
Score = 32.7 bits (65), Expect(4) = 2e-055
Identities = 15/22 (68%), Positives = 19/22 (86%)
Frame = +3 / +3
Query: 477 LVLYHVTCKALQIKKK***LQL 542
++ +HVTC ALQ KK+***LQL
Sbjct: 393 VLYHHVTCTALQNKKE***LQL 458
Score = 30.9 bits (61), Expect(4) = 7e-061
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1 / -2
Query: 398 IMLDQ*IAKNFNCWIVLPTRHFF 330
IML Q*I ++ +CWIV P F
Sbjct: 287 IMLGQ*IGRHCHCWIVTPKHTIF 219
Score = 29.9 bits (59), Expect(4) = 5e-061
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1 / +1
Query: 325 QRKKCLVGSTIQQLKFLAIYWSSMI 399
+ K +G TIQQ + L IYW SMI
Sbjct: 214 REKIVCLGVTIQQWQCLPIYWPSMI 288
Score = 27.6 bits (54), Expect(4) = 2e-055
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3 / +3
Query: 351 YYPAIEIFSNLLV*HD 398
YYPA+ + +NLL *HD
Sbjct: 240 YYPAMAMSANLLA*HD 287
Score = 25.8 bits (50), Expect(4) = 6e-055
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -3 / -1
Query: 399 NHARPVDC*KFQLLDS 352
NHARPVD LLDS
Sbjct: 288 NHARPVDWQTLPLLDS 241
Score = 23.5 bits (45), Expect(4) = 1e-036
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2 / -3
Query: 397 SC*TSRLLKISIAG* 353
SC* SRL I+IAG*
Sbjct: 286 SC*ASRLADIAIAG* 242
Score = 23.5 bits (45), Expect(3) = 4e-046
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +2 / +2
Query: 350 VLSSN*NF*QSTGLA* 397
+LSSN N QSTGLA*
Sbjct: 239 LLSSNGNVCQSTGLA* 286
>gb|BF421120.1|BF421120 FM1_6_F04.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 559
Score = 134 bits (287), Expect(5) = 2e-053
Identities = 48/58 (82%), Positives = 53/58 (91%)
Frame = +2 / +3
Query: 158 GQPHLHDLKGDRENKEQHGNNCSFGPVFGRPFCQGVLLTECFGFCWFCGMNRIASSKE 331
GQPHLHDLKGDRENKEQHGNNCSFGPVF RPFCQG+LLTECFG+ WFC MN IA+ ++
Sbjct: 3 GQPHLHDLKGDRENKEQHGNNCSFGPVFDRPFCQGMLLTECFGYSWFCDMNGIANREK 176
Score = 126 bits (270), Expect(4) = 2e-052
Identities = 52/59 (88%), Positives = 53/59 (89%)
Frame = -1 / -2
Query: 332 FLCCLRYDSYRRTNRIQNIL*EARLGRRVGQKLAQNCNCCRVAPYFLYPP*DHANVVGL 156
F C RY SYRRT+ IQNIL*EA LGRRVGQKLAQNCNCCRVAPYFLYPP*DHANVVGL
Sbjct: 177 FFLCWRYHSYRRTSCIQNIL*EACLGRRVGQKLAQNCNCCRVAPYFLYPP*DHANVVGL 1
Score = 123 bits (263), Expect(4) = 3e-047
Identities = 51/58 (87%), Positives = 52/58 (89%)
Frame = -2 / -3
Query: 331 FFAACDTIHTAEPTESKTFCKKHALAEGSAKNWPKTAIVAVLLLIFSIPLEIMQMWLA 158
FF+ DTIH AEP SKTFCKKHALAEGS KNWPKTAIVAVLLLIFSIPLEIMQMWLA
Sbjct: 176 FFSVGDTIHIAEPAVSKTFCKKHALAEGSVKNWPKTAIVAVLLLIFSIPLEIMQMWLA 3
Score = 119 bits (255), Expect(4) = 1e-045
Identities = 51/58 (87%), Positives = 54/58 (93%)
Frame = +1 / +2
Query: 157 RPTTFA*SQGG*RK*GATRQQLQFWASFWPTLLPRRASYRMFWILLVLRYESYRKQQR 330
RPTTFA*SQGG*RK*GATRQQLQFWASF PTLLPR ASYRMFWI LVLRYE YR+Q++
Sbjct: 2 RPTTFA*SQGG*RK*GATRQQLQFWASF*PTLLPRHASYRMFWIQLVLRYEWYRQQRK 175
Score = 119 bits (254), Expect(3) = 2e-037
Identities = 51/59 (86%), Positives = 54/59 (91%)
Frame = +3 / +1
Query: 156 EANHICMISRGIEKIRSNTATIAVLGQFLADPSAKACFLQNVLDSVGSAV*IVSQAAKK 332
EANHICMISRGIEKIRSNTATIAVLGQFL DPSAKACFLQNVLD+ GSA+*+VS KK
Sbjct: 1 EANHICMISRGIEKIRSNTATIAVLGQFLTDPSAKACFLQNVLDTAGSAI*MVSPTEKK 177
Score = 65.7 bits (137), Expect(3) = 4e-022
Identities = 27/33 (81%), Positives = 27/33 (81%)
Frame = -3 / -1
Query: 324 LLAIRFIPQNQQNPKHSVRSTPWQKGRPKTGPK 226
LLAI FI QNQ PKHSVRS PWQKGR KTGPK
Sbjct: 169 LLAIPFISQNQLYPKHSVRSMPWQKGRSKTGPK 71
Score = 63.8 bits (133), Expect(5) = 2e-053
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = +3 / +2
Query: 399 SSRVQICHLWDCTEDVTRKHQKGFGSLVLYH 491
SSRVQ HL DCTEDV RKHQ+GFGSLVLYH
Sbjct: 266 SSRVQNFHLEDCTEDVRRKHQQGFGSLVLYH 358
Score = 62.9 bits (131), Expect(4) = 2e-052
Identities = 24/30 (80%), Positives = 26/30 (86%)
Frame = -2 / -2
Query: 487 YNTREPKPFWCFLVTSSVQSHR*QICTREE 398
Y TREPKP WCFL+TSSVQS R*+ CTREE
Sbjct: 354 YKTREPKPCWCFLLTSSVQSSR*KFCTREE 265
Score = 57.9 bits (120), Expect(4) = 1e-045
Identities = 22/29 (75%), Positives = 23/29 (79%)
Frame = +2 / +1
Query: 401 FSGANLSPVGLYRGCHKKAPKGFWFSRVV 487
FSGA SP LYRGC KKAP GFWFSR+V
Sbjct: 268 FSGAKFSPGRLYRGCQKKAPTGFWFSRLV 354
Score = 56.5 bits (117), Expect(4) = 3e-047
Identities = 22/30 (73%), Positives = 24/30 (80%)
Frame = -3 / -3
Query: 486 TTRENQNPFGAFL*HPRYSPTGDKFAPEKN 397
T RENQNP GAF *HPRYS G+ FAPEK+
Sbjct: 353 TRRENQNPVGAFF*HPRYSLPGENFAPEKS 264
Score = 53.8 bits (111), Expect(3) = 4e-022
Identities = 24/31 (77%), Positives = 26/31 (83%)
Frame = -1 / -1
Query: 491 MVQHERTKTLLVLSCDILGTVPQVTNLHPRR 399
++Q ERTKTLLVLS DILGTV QV LHPRR
Sbjct: 358 VIQDERTKTLLVLSSDILGTVFQVKILHPRR 266
Score = 51.9 bits (107), Expect(3) = 2e-037
Identities = 22/29 (75%), Positives = 23/29 (79%)
Frame = +1 / +3
Query: 400 LLGCKFVTCGTVPRMSQESTKRVLVLSCC 486
LLGCK T TVPRMS+EST RVLVLS C
Sbjct: 267 LLGCKIFTWKTVPRMSEESTNRVLVLSSC 353
Score = 42.8 bits (87), Expect(4) = 2e-052
Identities = 18/22 (81%), Positives = 18/22 (81%)
Frame = -3 / -3
Query: 543 TVVTITISFLFEVPYK*HGTTR 478
TVVT TI F FEVPYK*HG TR
Sbjct: 413 TVVTTTILFYFEVPYK*HGDTR 348
Score = 40.0 bits (81), Expect(4) = 3e-047
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = -2 / -2
Query: 544 YSCNYYYFFFI*SALQVTW 488
+SCNYYY F *SA+QVTW
Sbjct: 414 HSCNYYYSFLF*SAVQVTW 358
Score = 35.4 bits (71), Expect(5) = 2e-053
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = +2 / +1
Query: 482 VVPCHL*GTSNKKEIVIVTTV 544
V PCHL GTS K IV+VTTV
Sbjct: 352 VSPCHLYGTSK*KRIVVVTTV 414
Score = 32.7 bits (65), Expect(4) = 1e-045
Identities = 15/22 (68%), Positives = 19/22 (86%)
Frame = +3 / +2
Query: 477 LVLYHVTCKALQIKKK***LQL 542
++ +HVTC ALQ KK+***LQL
Sbjct: 347 VLYHHVTCTALQNKKE***LQL 412
Score = 30.9 bits (61), Expect(4) = 2e-052
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1 / -1
Query: 398 IMLDQ*IAKNFNCWIVLPTRHFF 330
IML Q*I ++ +CWIV P F
Sbjct: 241 IMLGQ*IGRHCHCWIVTPKHTIF 173
Score = 29.9 bits (59), Expect(4) = 1e-045
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1 / +3
Query: 325 QRKKCLVGSTIQQLKFLAIYWSSMI 399
+ K +G TIQQ + L IYW SMI
Sbjct: 168 REKIVCLGVTIQQWQCLPIYWPSMI 242
Score = 27.6 bits (54), Expect(5) = 2e-053
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3 / +2
Query: 351 YYPAIEIFSNLLV*HD 398
YYPA+ + +NLL *HD
Sbjct: 194 YYPAMAMSANLLA*HD 241
Score = 25.8 bits (50), Expect(4) = 3e-047
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -3 / -3
Query: 399 NHARPVDC*KFQLLDS 352
NHARPVD LLDS
Sbjct: 242 NHARPVDWQTLPLLDS 195
Score = 23.5 bits (45), Expect(3) = 4e-022
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2 / -2
Query: 397 SC*TSRLLKISIAG* 353
SC* SRL I+IAG*
Sbjct: 240 SC*ASRLADIAIAG* 196
Score = 23.5 bits (45), Expect(3) = 2e-037
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +2 / +1
Query: 350 VLSSN*NF*QSTGLA* 397
+LSSN N QSTGLA*
Sbjct: 193 LLSSNGNVCQSTGLA* 240
Score = 21.7 bits (41), Expect(5) = 2e-053
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1 / +2
Query: 319 KQQRKKCLVGS 351
+QQRK C+ GS
Sbjct: 161 RQQRKNCVFGS 193
>gb|BF586901.1|BF586901 FM1_31_H03.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 528
Score = 107 bits (228), Expect(5) = 1e-045
Identities = 38/48 (79%), Positives = 43/48 (89%)
Frame = +2 / +1
Query: 188 DRENKEQHGNNCSFGPVFGRPFCQGVLLTECFGFCWFCGMNRIASSKE 331
DRENKEQHGNNCSFGPVF RPFCQG+LLTECFG+ WFC MN IA+ ++
Sbjct: 1 DRENKEQHGNNCSFGPVFDRPFCQGMLLTECFGYSWFCDMNGIANREK 144
Score = 100 bits (213), Expect(4) = 1e-044
Identities = 41/48 (85%), Positives = 42/48 (87%)
Frame = -1 / -3
Query: 332 FLCCLRYDSYRRTNRIQNIL*EARLGRRVGQKLAQNCNCCRVAPYFLY 189
F C RY SYRRT+ IQNIL*EA LGRRVGQKLAQNCNCCRVAPYFLY
Sbjct: 145 FFLCWRYHSYRRTSCIQNIL*EACLGRRVGQKLAQNCNCCRVAPYFLY 2
Score = 98.7 bits (209), Expect(4) = 6e-040
Identities = 41/48 (85%), Positives = 42/48 (87%)
Frame = -2 / -1
Query: 331 FFAACDTIHTAEPTESKTFCKKHALAEGSAKNWPKTAIVAVLLLIFSI 188
FF+ DTIH AEP SKTFCKKHALAEGS KNWPKTAIVAVLLLIFSI
Sbjct: 144 FFSVGDTIHIAEPAVSKTFCKKHALAEGSVKNWPKTAIVAVLLLIFSI 1
Score = 95.0 bits (201), Expect(4) = 2e-038
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = +1 / +3
Query: 190 *RK*GATRQQLQFWASFWPTLLPRRASYRMFWILLVLRYESYRKQQR 330
*RK*GATRQQLQFWASF PTLLPR ASYRMFWI LVLRYE YR+Q++
Sbjct: 3 *RK*GATRQQLQFWASF*PTLLPRHASYRMFWIQLVLRYEWYRQQRK 143
Score = 91.8 bits (194), Expect(3) = 3e-029
Identities = 40/48 (83%), Positives = 43/48 (89%)
Frame = +3 / +2
Query: 189 IEKIRSNTATIAVLGQFLADPSAKACFLQNVLDSVGSAV*IVSQAAKK 332
IEKIRSNTATIAVLGQFL DPSAKACFLQNVLD+ GSA+*+VS KK
Sbjct: 2 IEKIRSNTATIAVLGQFLTDPSAKACFLQNVLDTAGSAI*MVSPTEKK 145
Score = 65.7 bits (137), Expect(3) = 4e-022
Identities = 27/33 (81%), Positives = 27/33 (81%)
Frame = -3 / -2
Query: 324 LLAIRFIPQNQQNPKHSVRSTPWQKGRPKTGPK 226
LLAI FI QNQ PKHSVRS PWQKGR KTGPK
Sbjct: 137 LLAIPFISQNQLYPKHSVRSMPWQKGRSKTGPK 39
Score = 63.8 bits (133), Expect(5) = 1e-045
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = +3 / +3
Query: 399 SSRVQICHLWDCTEDVTRKHQKGFGSLVLYH 491
SSRVQ HL DCTEDV RKHQ+GFGSLVLYH
Sbjct: 234 SSRVQNFHLEDCTEDVRRKHQQGFGSLVLYH 326
Score = 62.9 bits (131), Expect(4) = 1e-044
Identities = 24/30 (80%), Positives = 26/30 (86%)
Frame = -2 / -3
Query: 487 YNTREPKPFWCFLVTSSVQSHR*QICTREE 398
Y TREPKP WCFL+TSSVQS R*+ CTREE
Sbjct: 322 YKTREPKPCWCFLLTSSVQSSR*KFCTREE 233
Score = 57.9 bits (120), Expect(4) = 2e-038
Identities = 22/29 (75%), Positives = 23/29 (79%)
Frame = +2 / +2
Query: 401 FSGANLSPVGLYRGCHKKAPKGFWFSRVV 487
FSGA SP LYRGC KKAP GFWFSR+V
Sbjct: 236 FSGAKFSPGRLYRGCQKKAPTGFWFSRLV 322
Score = 56.5 bits (117), Expect(4) = 6e-040
Identities = 22/30 (73%), Positives = 24/30 (80%)
Frame = -3 / -1
Query: 486 TTRENQNPFGAFL*HPRYSPTGDKFAPEKN 397
T RENQNP GAF *HPRYS G+ FAPEK+
Sbjct: 321 TRRENQNPVGAFF*HPRYSLPGENFAPEKS 232
Score = 53.8 bits (111), Expect(3) = 4e-022
Identities = 24/31 (77%), Positives = 26/31 (83%)
Frame = -1 / -2
Query: 491 MVQHERTKTLLVLSCDILGTVPQVTNLHPRR 399
++Q ERTKTLLVLS DILGTV QV LHPRR
Sbjct: 326 VIQDERTKTLLVLSSDILGTVFQVKILHPRR 234
Score = 51.9 bits (107), Expect(3) = 3e-029
Identities = 22/29 (75%), Positives = 23/29 (79%)
Frame = +1 / +1
Query: 400 LLGCKFVTCGTVPRMSQESTKRVLVLSCC 486
LLGCK T TVPRMS+EST RVLVLS C
Sbjct: 235 LLGCKIFTWKTVPRMSEESTNRVLVLSSC 321
Score = 42.8 bits (87), Expect(4) = 1e-044
Identities = 18/22 (81%), Positives = 18/22 (81%)
Frame = -3 / -1
Query: 543 TVVTITISFLFEVPYK*HGTTR 478
TVVT TI F FEVPYK*HG TR
Sbjct: 381 TVVTTTILFYFEVPYK*HGDTR 316
Score = 40.0 bits (81), Expect(4) = 6e-040
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = -2 / -3
Query: 544 YSCNYYYFFFI*SALQVTW 488
+SCNYYY F *SA+QVTW
Sbjct: 382 HSCNYYYSFLF*SAVQVTW 326
Score = 35.4 bits (71), Expect(5) = 1e-045
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = +2 / +2
Query: 482 VVPCHL*GTSNKKEIVIVTTV 544
V PCHL GTS K IV+VTTV
Sbjct: 320 VSPCHLYGTSK*KRIVVVTTV 382
Score = 32.7 bits (65), Expect(4) = 2e-038
Identities = 15/22 (68%), Positives = 19/22 (86%)
Frame = +3 / +3
Query: 477 LVLYHVTCKALQIKKK***LQL 542
++ +HVTC ALQ KK+***LQL
Sbjct: 315 VLYHHVTCTALQNKKE***LQL 380
Score = 30.9 bits (61), Expect(4) = 1e-044
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1 / -2
Query: 398 IMLDQ*IAKNFNCWIVLPTRHFF 330
IML Q*I ++ +CWIV P F
Sbjct: 209 IMLGQ*IGRHCHCWIVTPKHTIF 141
Score = 29.9 bits (59), Expect(4) = 2e-038
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1 / +1
Query: 325 QRKKCLVGSTIQQLKFLAIYWSSMI 399
+ K +G TIQQ + L IYW SMI
Sbjct: 136 REKIVCLGVTIQQWQCLPIYWPSMI 210
Score = 27.6 bits (54), Expect(5) = 1e-045
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3 / +3
Query: 351 YYPAIEIFSNLLV*HD 398
YYPA+ + +NLL *HD
Sbjct: 162 YYPAMAMSANLLA*HD 209
Score = 25.8 bits (50), Expect(4) = 6e-040
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -3 / -1
Query: 399 NHARPVDC*KFQLLDS 352
NHARPVD LLDS
Sbjct: 210 NHARPVDWQTLPLLDS 163
Score = 23.5 bits (45), Expect(3) = 4e-022
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2 / -3
Query: 397 SC*TSRLLKISIAG* 353
SC* SRL I+IAG*
Sbjct: 208 SC*ASRLADIAIAG* 164
Score = 23.5 bits (45), Expect(3) = 3e-029
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +2 / +2
Query: 350 VLSSN*NF*QSTGLA* 397
+LSSN N QSTGLA*
Sbjct: 161 LLSSNGNVCQSTGLA* 208
Score = 21.7 bits (41), Expect(5) = 1e-045
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1 / +3
Query: 319 KQQRKKCLVGS 351
+QQRK C+ GS
Sbjct: 129 RQQRKNCVFGS 161
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 721,878,015
Number of Sequences: 832831
Number of extensions: 10413678
Number of successful extensions: 114422
Number of sequences better than 1.0e-020: 6
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 15314753664
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)