TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3203235.2.1
(637 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX618974.1|CX618974 GABR1_42_F12.g1_A002 GA- or brassino... 379 e-104
gb|CW306082.1|CW306082 104_791_11466644_148_36272_070 Sorgh... 102 8e-049
gb|CW412012.1|CW412012 fsbb001f107h06f0 Sorghum methylation... 117 3e-046
gb|CW306081.1|CW306081 104_791_11466644_116_36271_070 Sorgh... 117 3e-046
gb|CX613388.1|CX613388 GABR1_7_H05.g1_A002 GA- or brassinol... 170 2e-041
gb|CL176857.1|CL176857 104_383_10893412_116_31773_244 Sorgh... 138 2e-041
gb|CW156295.1|CW156295 104_559_11146609_148_36372_011 Sorgh... 138 2e-040
gb|CD221400.1|CD221400 CCC1_54_H10.g1_A007 Callus culture/c... 166 4e-040
gb|CD428455.1|CD428455 ETH1_31_B03.g1_A002 Ethylene-treated... 157 1e-037
gb|CN126691.1|CN126691 RHOH1_18_D06.g1_A002 Acid- and alkal... 148 1e-034
gb|CX623274.1|CX623274 GABR1_68_E09.g1_A002 GA- or brassino... 148 1e-034
gb|CD206727.1|CD206727 HS1_24_H03.g1_A012 Heat-shocked seed... 147 1e-034
gb|CN149587.1|CN149587 WOUND1_63_E05.g1_A002 Wounded leaves... 147 1e-034
gb|CX608969.1|CX608969 ANR1_9_G12.g1_A002 Anaerobic roots S... 147 1e-034
gb|CN143494.1|CN143494 WOUND1_16_D04.g1_A002 Wounded leaves... 144 9e-034
gb|CD463977.1|CD463977 ETH1_47_F04.g1_A002 Ethylene-treated... 142 6e-033
gb|CX608576.1|CX608576 ANR1_39_A01.g1_A002 Anaerobic roots ... 142 6e-033
gb|CX611785.1|CX611785 ANR1_26_E06.g1_A002 Anaerobic roots ... 142 6e-033
gb|CD227487.1|CD227487 CCC1_51_F01.g1_A007 Callus culture/c... 140 2e-032
gb|CD221601.1|CD221601 CCC1_55_G07.g1_A007 Callus culture/c... 140 2e-032
gb|BE362203.1|BE362203 DG1_85_C03.b1_A002 Dark Grown 1 (DG1... 139 3e-032
gb|CL150594.1|CL150594 104_332_10778645_116_31358_197 Sorgh... 138 5e-032
gb|CL152165.1|CL152165 104_335_10779768_116_31364_168 Sorgh... 91 3e-031
gb|CD219719.1|CD219719 CCC1_58_A06.g1_A007 Callus culture/c... 135 5e-031
gb|CW474312.1|CW474312 fsbb001f230b16k0 Sorghum methylation... 91 1e-030
gb|CF434025.1|CF434025 NIT1_31_F11.g1_A002 Nitrogen-deficie... 131 1e-029
gb|CL152164.1|CL152164 104_335_10779768_114_31363_168 Sorgh... 71 5e-029
gb|CW309188.1|CW309188 104_797_11469065_116_35721_065 Sorgh... 102 7e-029
gb|CD427874.1|CD427874 ETH1_34_H06.g1_A002 Ethylene-treated... 88 6e-027
gb|BE361431.1|BE361431 DG1_72_B08.b1_A002 Dark Grown 1 (DG1... 120 2e-026
gb|CN126690.1|CN126690 RHOH1_18_D05.g1_A002 Acid- and alkal... 120 2e-026
gb|CX614824.1|CX614824 GABR1_16_C08.g1_A002 GA- or brassino... 120 2e-026
gb|CD423198.1|CD423198 SA1_27_D12.g1_A002 Salicylic acid-tr... 86 3e-026
gb|BG488194.1|BG488194 RHIZ2_60_F08.b1_A003 Rhizome2 (RHIZ2... 117 1e-025
gb|CL188229.1|CL188229 104_404_10901450_114_32445_007 Sorgh... 117 2e-025
gb|CW227174.1|CW227174 104_665_11205274_148_37225_039 Sorgh... 117 2e-025
gb|CW039493.1|CW039493 104_272_10505533_115_30390 Sorghum m... 115 8e-025
gb|CW785005.1|CW785005 SP__Ba0006M14.r SP__Ba Sorghum propi... 91 2e-024
gb|CX606918.1|CX606918 ANR1_5_E02.g1_A002 Anaerobic roots S... 113 3e-024
gb|CX622584.1|CX622584 GABR1_64_G04.g2_A002 GA- or brassino... 113 3e-024
gb|AW565320.1|AW565320 LG1_342_A12.g1_A002 Light Grown 1 (L... 111 8e-024
gb|CW222636.1|CW222636 104_658_11202482_148_37179_011 Sorgh... 83 5e-023
gb|CW111937.1|CW111937 104_485_11104609_116_34537_005 Sorgh... 83 2e-022
gb|BG241298.1|BG241298 OV1_40_F02.b1_A002 Ovary 1 (OV1) Sor... 107 2e-022
gb|BZ691344.1|BZ691344 SP__Ba0006M14.r SP__Ba Sorghum propi... 91 6e-022
gb|BE360355.1|BE360355 DG1_63_A09.b1_A002 Dark Grown 1 (DG1... 105 9e-022
gb|CX609975.1|CX609975 ANR1_15_H05.g1_A002 Anaerobic roots ... 104 2e-021
gb|CW309189.1|CW309189 104_797_11469065_148_35725_065 Sorgh... 102 4e-021
>gb|CX618974.1|CX618974 GABR1_42_F12.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_42_F12_A002 5', mRNA sequence
Length = 622
Score = 379 bits (821), Expect = e-104
Identities = 162/172 (94%), Positives = 165/172 (95%)
Frame = +2 / +1
Query: 122 LWRRYAPHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKG 301
LW RYAPHV MVLAQLCYTLMYFITEA FNQGLNPYVYITYRHLLVAVLIWPFAYY EKG
Sbjct: 106 LWVRYAPHVLMVLAQLCYTLMYFITEAGFNQGLNPYVYITYRHLLVAVLIWPFAYYQEKG 285
Query: 302 LRPKMTLMLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRM 481
LRPKMTLMLF+EIFVLSLLGVSLTLNMYF SLKYTSPTFVTSVVNTIASMTFVIAIILRM
Sbjct: 286 LRPKMTLMLFMEIFVLSLLGVSLTLNMYFASLKYTSPTFVTSVVNTIASMTFVIAIILRM 465
Query: 482 EIVDVKSLRGVAKVAGTVVSFAGVTTMTLYKGAAITSLWKSPVQIAGSGSGG 637
EIVDVKSLRG+AK+AGTVVSFAGVTTMTLYKGAAITSLWKSPV I GSGSGG
Sbjct: 466 EIVDVKSLRGLAKIAGTVVSFAGVTTMTLYKGAAITSLWKSPVHIPGSGSGG 621
Score = 340 bits (736), Expect = 2e-092
Identities = 153/171 (89%), Positives = 157/171 (91%)
Frame = -2 / -3
Query: 636 PPLPLPAI*TGDFQRLVMAAPLYRVMVVTPANDTTVPATLATPRRLFTSTISILRMMAMT 457
PPLPLP I*TGDFQRLVMAAPLYRVMVVTPA DTTVPA LA+PRRLFTSTISILRMMAMT
Sbjct: 620 PPLPLPGI*TGDFQRLVMAAPLYRVMVVTPAKDTTVPAILASPRRLFTSTISILRMMAMT 441
Query: 456 NVIEAMVFTTEVTNVGDVYFRLVKYMFRVKLTPRRESTNISTNSMSVILGLSPFSR*YAK 277
NVIEAMVFTTEVTNVG+VYF+L KYMFRVKLTPR ESTNIS NSMSVILGL+PFS * AK
Sbjct: 440 NVIEAMVFTTEVTNVGEVYFKLAKYMFRVKLTPRSESTNISMNSMSVILGLNPFSW**AK 261
Query: 276 GQMRTATSRWR*VM*T*GLRPWLKAASVMKYMSV*HSCASTIWTCGAYLRH 124
GQMRTATSR R*VM*T*GL PWLK ASVMKYMSV*HSCASTI TCGAY H
Sbjct: 260 GQMRTATSR*R*VM*T*GLSPWLKPASVMKYMSV*HSCASTISTCGAYRTH 108
Score = 227 bits (490), Expect = 1e-058
Identities = 103/170 (60%), Positives = 107/170 (62%)
Frame = +1 / +3
Query: 124 VAEVCAARPDXXXXXXXXXXXXXXXXXXQPGSQPLRLHHLPPSARRRPHLALRILPGEGA 303
V V AAR D QPG+QPLRLHHLP SARRRPHLALR+LPGE
Sbjct: 108 VGAVRAARADGAGAAVLHAHVLHHRGRLQPGAQPLRLHHLPSSARRRPHLALRLLPGERV 287
Query: 304 EA*NDAHAVRGDIRALPSRGELNSEHVLHEPEVHVPNVRHFRGEXXXXXXXXXXXXPQDG 483
EA*NDAHAV GDI AL SRGELNSEHVL E EVH P+VRH RGE PQDG
Sbjct: 288 EA*NDAHAVHGDICALASRGELNSEHVLRELEVHFPDVRHLRGEHHCLNDVRHRHHPQDG 467
Query: 484 DRGREEPTXXXXXXXXXXXXXXXXHHDSVQRSGHHEPLEVACSDRRQRQR 633
DRGREEPT HHDSVQRS HH+PLEVACS RQRQR
Sbjct: 468 DRGREEPTRARQDRRDGGVFRGGDHHDSVQRSSHHQPLEVACSYPRQRQR 617
Score = 124 bits (266), Expect(3) = 4e-046
Identities = 51/58 (87%), Positives = 52/58 (89%)
Frame = -1 / -2
Query: 421 DERWGRVLQAREVHVQS*AHPEKGEHEYLHEQHERHFRPQPLLQVVCEGPDEDGDEQM 248
DER G VLQAREVHVQS*AHPEK EH+YLHEQHERHFRPQP L VV EGPDEDGDEQM
Sbjct: 405 DERRGSVLQAREVHVQS*AHPEKREHKYLHEQHERHFRPQPFLLVVGEGPDEDGDEQM 232
Score = 93.6 bits (198), Expect(3) = 6e-026
Identities = 41/47 (87%), Positives = 42/47 (89%)
Frame = +3 / +2
Query: 492 T*RAYAGSPRSQGPWCRSPG*PP*LCTKERPSRASGSRLFRSPAAAA 632
T*RAYAGSPRSQG WC S G*PP*LCTKE+PS ASGSRLF SPAAAA
Sbjct: 476 T*RAYAGSPRSQGRWCLSRG*PP*LCTKEQPSPASGSRLFISPAAAA 616
Score = 68.4 bits (143), Expect(3) = 4e-046
Identities = 31/46 (67%), Positives = 33/46 (71%)
Frame = -1 / -2
Query: 619 GDLNRRLPEARDGRSFVQSXXXXXXXXXXXPCDLGDPA*ALHVHDL 482
GD+NRRLPEA DG SFVQS PCDLG+PA*ALHVHDL
Sbjct: 603 GDMNRRLPEAGDGCSFVQSHGGHPRERHHRPCDLGEPA*ALHVHDL 466
Score = 37.3 bits (75), Expect(3) = 6e-026
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = +3 / +2
Query: 354 FSG*A*L*TCTSRA*STRPQ 413
FSG*A*L*TCTSRA*ST P+
Sbjct: 338 FSG*A*L*TCTSRA*STLPR 397
Score = 31.3 bits (62), Expect(3) = 4e-046
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = -1 / -2
Query: 184 HERVAQLRQHHLDV 143
HERVAQLRQHH V
Sbjct: 168 HERVAQLRQHHQHV 127
Score = 27.2 bits (53), Expect(3) = 6e-026
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +3 / +2
Query: 153 WCWRSCA 173
WCWRSCA
Sbjct: 137 WCWRSCA 157
>gb|CW306082.1|CW306082 104_791_11466644_148_36272_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11466644, DNA
sequence
Length = 619
Score = 102 bits (217), Expect(3) = 8e-049
Identities = 40/42 (95%), Positives = 40/42 (95%)
Frame = +2 / +1
Query: 173 YTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEK 298
YTLMYFITEA FNQGLNPYVYITYRHLLVAVLIWPFAYY EK
Sbjct: 1 YTLMYFITEAGFNQGLNPYVYITYRHLLVAVLIWPFAYYQEK 126
Score = 84.5 bits (178), Expect(3) = 7e-042
Identities = 35/38 (92%), Positives = 37/38 (97%)
Frame = -2 / -2
Query: 474 RMMAMTNVIEAMVFTTEVTNVGDVYFRLVKYMFRVKLT 361
RMMAMTNVIEAMVFTTEVTNVG+VYF+L KYMFRVKLT
Sbjct: 618 RMMAMTNVIEAMVFTTEVTNVGEVYFKLAKYMFRVKLT 505
Score = 83.5 bits (176), Expect(3) = 8e-049
Identities = 37/38 (97%), Positives = 37/38 (97%)
Frame = +2 / +2
Query: 362 VSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIIL 475
VSLTLNMYF SLKYTSPTFVTSVVNTIASMTFVIAIIL
Sbjct: 506 VSLTLNMYFASLKYTSPTFVTSVVNTIASMTFVIAIIL 619
Score = 72.5 bits (152), Expect(3) = 7e-042
Identities = 36/41 (87%), Positives = 36/41 (87%)
Frame = -2 / -3
Query: 297 FSR*YAKGQMRTATSRWR*VM*T*GLRPWLKAASVMKYMSV 175
FS * AKGQMRTATSR R*VM*T*GL PWLK ASVMKYMSV
Sbjct: 125 FSW**AKGQMRTATSR*R*VM*T*GLSPWLKPASVMKYMSV 3
Score = 71.2 bits (149), Expect(3) = 1e-026
Identities = 27/30 (90%), Positives = 29/30 (96%)
Frame = +1 / +3
Query: 208 QPGSQPLRLHHLPPSARRRPHLALRILPGE 297
QPG+QPLRLHHLP SARRRPHLALR+LPGE
Sbjct: 36 QPGAQPLRLHHLPSSARRRPHLALRLLPGE 125
Score = 55.1 bits (114), Expect(3) = 7e-042
Identities = 19/21 (90%), Positives = 20/21 (95%)
Frame = -1 / -1
Query: 361 PEKGEHEYLHEQHERHFRPQP 299
PEK EH+YLHEQHERHFRPQP
Sbjct: 331 PEKREHKYLHEQHERHFRPQP 269
Score = 51.5 bits (106), Expect(3) = 1e-026
Identities = 20/26 (76%), Positives = 22/26 (84%)
Frame = +1 / +1
Query: 358 RGELNSEHVLHEPEVHVPNVRHFRGE 435
+GELNSEHVL E EVH P+VRH RGE
Sbjct: 502 QGELNSEHVLRELEVHFPDVRHLRGE 579
Score = 49.6 bits (102), Expect(3) = 8e-049
Identities = 21/27 (77%), Positives = 25/27 (92%)
Frame = +2 / +2
Query: 296 KGLRPKMTLMLFVEIFVLSLLGVSLTL 376
+GLRPKMTLMLF+EIFVLSLLG L++
Sbjct: 266 RGLRPKMTLMLFMEIFVLSLLG*ELSV 346
Score = 37.7 bits (76), Expect(3) = 1e-026
Identities = 17/26 (65%), Positives = 18/26 (69%)
Frame = +1 / +1
Query: 304 EA*NDAHAVRGDIRALPSRGELNSEH 381
EA*NDAHAV GDI AL SR +H
Sbjct: 274 EA*NDAHAVHGDICALASRVRAERDH 351
>gb|CW412012.1|CW412012 fsbb001f107h06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f107h06, DNA
sequence
Length = 806
Score = 117 bits (250), Expect(2) = 3e-046
Identities = 50/54 (92%), Positives = 52/54 (96%)
Frame = +2 / +3
Query: 476 RMEIVDVKSLRGVAKVAGTVVSFAGVTTMTLYKGAAITSLWKSPVQIAGSGSGG 637
RMEIVDVKSLRG+AK+AGTVVSFAGVTTMTLYKGAAITSLWKSPV I GSGSGG
Sbjct: 447 RMEIVDVKSLRGLAKIAGTVVSFAGVTTMTLYKGAAITSLWKSPVHIPGSGSGG 608
Score = 116 bits (249), Expect(2) = 1e-044
Identities = 50/55 (90%), Positives = 52/55 (94%)
Frame = -2 / -2
Query: 636 PPLPLPAI*TGDFQRLVMAAPLYRVMVVTPANDTTVPATLATPRRLFTSTISILR 472
PPLPLP I*TGDFQRLVMAAPLYRVMVVTPA DTTVPA LA+PRRLFTSTISIL+
Sbjct: 607 PPLPLPGI*TGDFQRLVMAAPLYRVMVVTPAKDTTVPAILASPRRLFTSTISILK 443
Score = 93.6 bits (198), Expect(2) = 3e-027
Identities = 41/47 (87%), Positives = 42/47 (89%)
Frame = +3 / +1
Query: 492 T*RAYAGSPRSQGPWCRSPG*PP*LCTKERPSRASGSRLFRSPAAAA 632
T*RAYAGSPRSQG WC S G*PP*LCTKE+PS ASGSRLF SPAAAA
Sbjct: 463 T*RAYAGSPRSQGRWCLSRG*PP*LCTKEQPSPASGSRLFISPAAAA 603
Score = 89.0 bits (188), Expect(2) = 3e-046
Identities = 39/47 (82%), Positives = 43/47 (91%)
Frame = +2 / +3
Query: 362 VSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVKS 502
VSLTLNMYF SLKYTSPTFVTSVVNTIASMTFVIAIILR ++ ++ S
Sbjct: 198 VSLTLNMYFASLKYTSPTFVTSVVNTIASMTFVIAIILR*QLTNIPS 338
Score = 86.3 bits (182), Expect(2) = 1e-044
Identities = 36/39 (92%), Positives = 38/39 (97%)
Frame = -2 / -2
Query: 477 LRMMAMTNVIEAMVFTTEVTNVGDVYFRLVKYMFRVKLT 361
LRMMAMTNVIEAMVFTTEVTNVG+VYF+L KYMFRVKLT
Sbjct: 313 LRMMAMTNVIEAMVFTTEVTNVGEVYFKLAKYMFRVKLT 197
Score = 51.5 bits (106), Expect(2) = 3e-027
Identities = 20/26 (76%), Positives = 22/26 (84%)
Frame = +1 / +2
Query: 358 RGELNSEHVLHEPEVHVPNVRHFRGE 435
+GELNSEHVL E EVH P+VRH RGE
Sbjct: 194 QGELNSEHVLRELEVHFPDVRHLRGE 271
>gb|CW306081.1|CW306081 104_791_11466644_116_36271_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11466644, DNA
sequence
Length = 652
Score = 117 bits (250), Expect(2) = 3e-046
Identities = 50/54 (92%), Positives = 52/54 (96%)
Frame = +2 / -2
Query: 476 RMEIVDVKSLRGVAKVAGTVVSFAGVTTMTLYKGAAITSLWKSPVQIAGSGSGG 637
RMEIVDVKSLRG+AK+AGTVVSFAGVTTMTLYKGAAITSLWKSPV I GSGSGG
Sbjct: 297 RMEIVDVKSLRGLAKIAGTVVSFAGVTTMTLYKGAAITSLWKSPVHIPGSGSGG 136
Score = 116 bits (249), Expect(2) = 9e-045
Identities = 50/55 (90%), Positives = 52/55 (94%)
Frame = -2 / +2
Query: 636 PPLPLPAI*TGDFQRLVMAAPLYRVMVVTPANDTTVPATLATPRRLFTSTISILR 472
PPLPLP I*TGDFQRLVMAAPLYRVMVVTPA DTTVPA LA+PRRLFTSTISIL+
Sbjct: 137 PPLPLPGI*TGDFQRLVMAAPLYRVMVVTPAKDTTVPAILASPRRLFTSTISILK 301
Score = 93.6 bits (198), Expect(2) = 2e-027
Identities = 41/47 (87%), Positives = 42/47 (89%)
Frame = +3 / -3
Query: 492 T*RAYAGSPRSQGPWCRSPG*PP*LCTKERPSRASGSRLFRSPAAAA 632
T*RAYAGSPRSQG WC S G*PP*LCTKE+PS ASGSRLF SPAAAA
Sbjct: 281 T*RAYAGSPRSQGRWCLSRG*PP*LCTKEQPSPASGSRLFISPAAAA 141
Score = 89.0 bits (188), Expect(2) = 3e-046
Identities = 39/47 (82%), Positives = 43/47 (91%)
Frame = +2 / -2
Query: 362 VSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVKS 502
VSLTLNMYF SLKYTSPTFVTSVVNTIASMTFVIAIILR ++ ++ S
Sbjct: 546 VSLTLNMYFASLKYTSPTFVTSVVNTIASMTFVIAIILR*QLTNIPS 406
Score = 86.3 bits (182), Expect(2) = 9e-045
Identities = 36/39 (92%), Positives = 38/39 (97%)
Frame = -2 / +2
Query: 477 LRMMAMTNVIEAMVFTTEVTNVGDVYFRLVKYMFRVKLT 361
LRMMAMTNVIEAMVFTTEVTNVG+VYF+L KYMFRVKLT
Sbjct: 431 LRMMAMTNVIEAMVFTTEVTNVGEVYFKLAKYMFRVKLT 547
Score = 51.5 bits (106), Expect(2) = 2e-027
Identities = 20/26 (76%), Positives = 22/26 (84%)
Frame = +1 / -1
Query: 358 RGELNSEHVLHEPEVHVPNVRHFRGE 435
+GELNSEHVL E EVH P+VRH RGE
Sbjct: 550 QGELNSEHVLRELEVHFPDVRHLRGE 473
>gb|CX613388.1|CX613388 GABR1_7_H05.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_7_H05_A002 5', mRNA sequence
Length = 757
Score = 170 bits (366), Expect = 2e-041
Identities = 72/155 (46%), Positives = 100/155 (64%)
Frame = +2 / +2
Query: 140 PHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMT 319
P++ M Q Y M IT+ + N G++ YV + YRH + I PFA LE+ +RPKMT
Sbjct: 170 PYIAMTSLQFGYAGMNVITKVSLNHGMSHYVLVVYRHAFATISIAPFALILERKVRPKMT 349
Query: 320 LMLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVK 499
+F++IFVL+LLG + N Y+ LK+T PTF ++ N + +MTFV+A+I RME VD+K
Sbjct: 350 WSVFLQIFVLALLGPVIDQNFYYAGLKFTGPTFACAMSNILPAMTFVMAVIFRMEKVDLK 529
Query: 500 SLRGVAKVAGTVVSFAGVTTMTLYKGAAITSLWKS 604
+R AKVAGT+V+ AG MTLYKG + W S
Sbjct: 530 KVRCQAKVAGTLVTVAGAMMMTLYKGPLMKMAWTS 634
>gb|CL176857.1|CL176857 104_383_10893412_116_31773_244 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10893412, DNA
sequence
Length = 709
Score = 138 bits (297), Expect(3) = 2e-041
Identities = 55/59 (93%), Positives = 55/59 (93%)
Frame = +2 / -2
Query: 122 LWRRYAPHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEK 298
LW RYAPHV MVLAQLCYTLMYFITEA FNQGLNPYVYITYRHLLVAVLIWPFAYY EK
Sbjct: 579 LWVRYAPHVLMVLAQLCYTLMYFITEAGFNQGLNPYVYITYRHLLVAVLIWPFAYYQEK 403
Score = 105 bits (224), Expect(3) = 6e-033
Identities = 50/58 (86%), Positives = 50/58 (86%)
Frame = -2 / +2
Query: 297 FSR*YAKGQMRTATSRWR*VM*T*GLRPWLKAASVMKYMSV*HSCASTIWTCGAYLRH 124
FS * AKGQMRTATSR R*VM*T*GL PWLK ASVMKYMSV*HSCASTI TCGAY H
Sbjct: 404 FSW**AKGQMRTATSR*R*VM*T*GLSPWLKPASVMKYMSV*HSCASTISTCGAYRTH 577
Score = 55.1 bits (114), Expect(3) = 6e-033
Identities = 19/21 (90%), Positives = 20/21 (95%)
Frame = -1 / +3
Query: 361 PEKGEHEYLHEQHERHFRPQP 299
PEK EH+YLHEQHERHFRPQP
Sbjct: 198 PEKREHKYLHEQHERHFRPQP 260
Score = 49.6 bits (102), Expect(3) = 2e-041
Identities = 21/27 (77%), Positives = 25/27 (92%)
Frame = +2 / -3
Query: 296 KGLRPKMTLMLFVEIFVLSLLGVSLTL 376
+GLRPKMTLMLF+EIFVLSLLG L++
Sbjct: 263 RGLRPKMTLMLFMEIFVLSLLG*ELSV 183
Score = 22.6 bits (43), Expect(3) = 2e-041
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +1 / -2
Query: 358 RGELNSEHV 384
+GELNSEHV
Sbjct: 27 QGELNSEHV 1
Score = 21.7 bits (41), Expect(3) = 6e-033
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2 / +1
Query: 384 YMFRVKLT 361
YMFRVKLT
Sbjct: 1 YMFRVKLT 24
>gb|CW156295.1|CW156295 104_559_11146609_148_36372_011 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11146609, DNA
sequence
Length = 621
Score = 138 bits (297), Expect(2) = 2e-040
Identities = 55/59 (93%), Positives = 55/59 (93%)
Frame = +2 / -2
Query: 122 LWRRYAPHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEK 298
LW RYAPHV MVLAQLCYTLMYFITEA FNQGLNPYVYITYRHLLVAVLIWPFAYY EK
Sbjct: 530 LWVRYAPHVLMVLAQLCYTLMYFITEAGFNQGLNPYVYITYRHLLVAVLIWPFAYYQEK 354
Score = 105 bits (224), Expect(2) = 4e-032
Identities = 50/58 (86%), Positives = 50/58 (86%)
Frame = -2 / +1
Query: 297 FSR*YAKGQMRTATSRWR*VM*T*GLRPWLKAASVMKYMSV*HSCASTIWTCGAYLRH 124
FS * AKGQMRTATSR R*VM*T*GL PWLK ASVMKYMSV*HSCASTI TCGAY H
Sbjct: 355 FSW**AKGQMRTATSR*R*VM*T*GLSPWLKPASVMKYMSV*HSCASTISTCGAYRTH 528
Score = 55.1 bits (114), Expect(2) = 4e-032
Identities = 19/21 (90%), Positives = 20/21 (95%)
Frame = -1 / +2
Query: 361 PEKGEHEYLHEQHERHFRPQP 299
PEK EH+YLHEQHERHFRPQP
Sbjct: 149 PEKREHKYLHEQHERHFRPQP 211
Score = 49.6 bits (102), Expect(2) = 2e-040
Identities = 21/27 (77%), Positives = 25/27 (92%)
Frame = +2 / -3
Query: 296 KGLRPKMTLMLFVEIFVLSLLGVSLTL 376
+GLRPKMTLMLF+EIFVLSLLG L++
Sbjct: 214 RGLRPKMTLMLFMEIFVLSLLG*ELSV 134
>gb|CD221400.1|CD221400 CCC1_54_H10.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_54_H10_A007 5', mRNA sequence
Length = 628
Score = 166 bits (356), Expect = 4e-040
Identities = 70/146 (47%), Positives = 97/146 (66%)
Frame = +2 / +1
Query: 140 PHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMT 319
P++ M Q Y M IT+ + N G++ YV + YRH + I PFA LE+ +RPKMT
Sbjct: 181 PYIAMTSLQFGYAGMNVITKVSLNHGMSHYVLVVYRHAFATISIAPFALILERKVRPKMT 360
Query: 320 LMLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVK 499
+F++IFVL+LLG + N Y+ LK+T PTF ++ N + +MTFV+A+I RME VD+K
Sbjct: 361 WSVFLQIFVLALLGPVIDQNFYYAGLKFTGPTFACAMSNILPAMTFVMAVIFRMEKVDLK 540
Query: 500 SLRGVAKVAGTVVSFAGVTTMTLYKG 577
+R AKVAGT+V+ AG MTLYKG
Sbjct: 541 KVRCQAKVAGTLVTVAGAMMMTLYKG 618
>gb|CD428455.1|CD428455 ETH1_31_B03.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_31_B03_A002 5', mRNA sequence
Length = 604
Score = 157 bits (338), Expect = 1e-037
Identities = 67/143 (46%), Positives = 94/143 (65%)
Frame = +2 / +2
Query: 140 PHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMT 319
P++ M Q Y M IT+ + N G++ YV + YRH + I PFA LE+ +RPKMT
Sbjct: 176 PYIAMTSLQFGYAGMNVITKVSLNHGMSHYVLVVYRHAFATISIAPFALILERKVRPKMT 355
Query: 320 LMLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVK 499
+F++IFVL+LLG + N Y+ LK+T PTF ++ N + +MTFV+A+I RME VD+K
Sbjct: 356 WSVFLQIFVLALLGPVIDQNFYYAGLKFTGPTFACAMSNILPAMTFVMAVIFRMEKVDLK 535
Query: 500 SLRGVAKVAGTVVSFAGVTTMTL 568
+R AKVAGT+V+ AG MTL
Sbjct: 536 KVRCQAKVAGTLVTVAGAMMMTL 604
>gb|CN126691.1|CN126691 RHOH1_18_D06.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_18_D06_A002 5', mRNA sequence
Length = 851
Score = 148 bits (317), Expect = 1e-034
Identities = 60/162 (37%), Positives = 99/162 (61%)
Frame = +2 / +2
Query: 125 WRRYAPHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGL 304
WR+ P++ MV QL + M+ I+ A+ QG++ YV + YR++ A+++ PFA + E+
Sbjct: 125 WRKVMPYMAMVFLQLGFAGMFLISVASLRQGMSHYVLVVYRNVAAAIVMAPFALWFERKT 304
Query: 305 RPKMTLMLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRME 484
RPK++L +F++I L LL L N + + TS +F +++ N + ++TFV AIILRME
Sbjct: 305 RPKLSLSVFIKILALGLLEPVLDQNFIYMGVNSTSASFASALTNILPALTFVNAIILRME 484
Query: 485 IVDVKSLRGVAKVAGTVVSFAGVTTMTLYKGAAITSLWKSPV 610
++ K R +AK+AGT ++ G M L+KG + W V
Sbjct: 485 RIETKERRSLAKIAGTAITVGGALLMILFKGPNVNCPWSKHV 610
>gb|CX623274.1|CX623274 GABR1_68_E09.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_68_E09_A002 5', mRNA sequence
Length = 610
Score = 148 bits (317), Expect = 1e-034
Identities = 60/162 (37%), Positives = 99/162 (61%)
Frame = +2 / +2
Query: 125 WRRYAPHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGL 304
WR+ P++ MV QL + M+ I+ A+ QG++ YV + YR++ A+++ PFA + E+
Sbjct: 122 WRKVMPYMAMVFLQLGFAGMFLISVASLRQGMSHYVLVVYRNVAAAIVMAPFALWFERKT 301
Query: 305 RPKMTLMLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRME 484
RPK++L +F++I L LL L N + + TS +F +++ N + ++TFV AIILRME
Sbjct: 302 RPKLSLSVFIKILALGLLEPVLDQNFIYMGVNSTSASFASALTNILPALTFVNAIILRME 481
Query: 485 IVDVKSLRGVAKVAGTVVSFAGVTTMTLYKGAAITSLWKSPV 610
++ K R +AK+AGT ++ G M L+KG + W V
Sbjct: 482 RIETKERRSLAKIAGTAITVGGALLMILFKGPNVNCPWSKHV 607
>gb|CD206727.1|CD206727 HS1_24_H03.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_24_H03_A012 5', mRNA sequence
Length = 647
Score = 147 bits (316), Expect = 1e-034
Identities = 60/145 (41%), Positives = 97/145 (66%)
Frame = +2 / +1
Query: 155 VLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMTLMLFV 334
++ QL YT MY +++AAFN G++ YV+I YR L+ P A LE+ P M+ LF+
Sbjct: 163 IIIQLIYTGMYVVSKAAFNHGMSTYVFIFYRQAAATALLLPLAIVLERRNAPPMSFRLFL 342
Query: 335 EIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVKSLRGV 514
++F +LLG +L++N+Y SLKYTS T ++ N++ +TF +A++LR+E+V ++S G+
Sbjct: 343 KLFFYALLGNTLSMNLYNISLKYTSATVASATSNSVPVVTFFLAVLLRLEVVRLRSPSGM 522
Query: 515 AKVAGTVVSFAGVTTMTLYKGAAIT 589
AK AG + AGV T+ LY G +++
Sbjct: 523 AKAAGVALCLAGVLTIALYTGPSMS 597
>gb|CN149587.1|CN149587 WOUND1_63_E05.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_63_E05_A002 5', mRNA sequence
Length = 856
Score = 147 bits (316), Expect = 1e-034
Identities = 60/145 (41%), Positives = 97/145 (66%)
Frame = +2 / +1
Query: 155 VLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMTLMLFV 334
++ QL YT MY +++AAFN G++ YV+I YR L+ P A LE+ P M+ LF+
Sbjct: 154 IIIQLIYTGMYVVSKAAFNHGMSTYVFIFYRQAAATALLLPLAIVLERRNAPPMSFRLFL 333
Query: 335 EIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVKSLRGV 514
++F +LLG +L++N+Y SLKYTS T ++ N++ +TF +A++LR+E+V ++S G+
Sbjct: 334 KLFFYALLGNTLSMNLYNISLKYTSATVASATSNSVPVVTFFLAVLLRLEVVRLRSPSGM 513
Query: 515 AKVAGTVVSFAGVTTMTLYKGAAIT 589
AK AG + AGV T+ LY G +++
Sbjct: 514 AKAAGVALCLAGVLTIALYTGPSMS 588
>gb|CX608969.1|CX608969 ANR1_9_G12.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_9_G12_A002 5', mRNA sequence
Length = 699
Score = 147 bits (316), Expect = 1e-034
Identities = 60/145 (41%), Positives = 97/145 (66%)
Frame = +2 / +2
Query: 155 VLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMTLMLFV 334
++ QL YT MY +++AAFN G++ YV+I YR L+ P A LE+ P M+ LF+
Sbjct: 86 IIIQLIYTGMYVVSKAAFNHGMSTYVFIFYRQAAATALLLPLAIVLERRNAPPMSFRLFL 265
Query: 335 EIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVKSLRGV 514
++F +LLG +L++N+Y SLKYTS T ++ N++ +TF +A++LR+E+V ++S G+
Sbjct: 266 KLFFYALLGNTLSMNLYNISLKYTSATVASATSNSVPVVTFFLAVLLRLEVVRLRSPSGM 445
Query: 515 AKVAGTVVSFAGVTTMTLYKGAAIT 589
AK AG + AGV T+ LY G +++
Sbjct: 446 AKAAGVALCLAGVLTIALYTGPSMS 520
>gb|CN143494.1|CN143494 WOUND1_16_D04.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_16_D04_A002 5', mRNA sequence
Length = 738
Score = 144 bits (310), Expect = 9e-034
Identities = 59/131 (45%), Positives = 87/131 (66%)
Frame = +2 / +3
Query: 185 YFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMTLMLFVEIFVLSLLGV 364
+ ++ AA N G++ V I YR+++ L+ PFAY+LEK RP +T L VE F+L+L G+
Sbjct: 186 HIVSRAALNMGVSKIVLIVYRNVISLALLAPFAYFLEKKDRPPLTFSLLVEFFLLALCGI 365
Query: 365 SLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVKSLRGVAKVAGTVVSF 544
+ Y L + SPT+ +++ NT+ ++TFV+A +LR+E VD+ GVAKV GTVVS
Sbjct: 366 TANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLRLEQVDLSRRHGVAKVVGTVVSI 545
Query: 545 AGVTTMTLYKG 577
G T +TLYKG
Sbjct: 546 GGATVITLYKG 578
>gb|CD463977.1|CD463977 ETH1_47_F04.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_47_F04_A002 5', mRNA sequence
Length = 592
Score = 142 bits (304), Expect = 6e-033
Identities = 55/136 (40%), Positives = 95/136 (69%)
Frame = +2 / +1
Query: 185 YFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMTLMLFVEIFVLSLLGV 364
+ ++ AA + G++ ++ YR+ ++I P AY+LEK RP +TL L ++ F+L+ +GV
Sbjct: 181 HVVSRAALDMGVSKMAFLVYRNGSALLVIAPVAYFLEKKDRPPLTLRLMIDFFMLAAVGV 360
Query: 365 SLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVKSLRGVAKVAGTVVSF 544
+ T +Y L Y SPT+V+ + N++ ++TFV+A +LR+E V+++S G+AK+AGTV++
Sbjct: 361 TFTQGLYILGLYYLSPTYVSVIQNSVPAITFVMAAVLRIEQVNIRSRHGLAKIAGTVITI 540
Query: 545 AGVTTMTLYKGAAITS 592
AG T +TLYKG +T+
Sbjct: 541 AGATIITLYKGMPLTT 588
>gb|CX608576.1|CX608576 ANR1_39_A01.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_39_A01_A002 5', mRNA sequence
Length = 792
Score = 142 bits (304), Expect = 6e-033
Identities = 62/150 (41%), Positives = 93/150 (62%)
Frame = +2 / +3
Query: 140 PHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMT 319
P V M+ + +M + + A N G+NP V +T + L AV + P A++ E+ RPK+T
Sbjct: 87 PVVVMLCLNVVAAVMVSLVKVAMNGGMNPLVIVTLQQLTAAVFLAPIAFFKERKSRPKLT 266
Query: 320 LMLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVK 499
L +F IFV + LG +L M F +L+YT+ TFVT+ N +TF++A+ R +D+K
Sbjct: 267 LEIFAYIFVSAALGAALRQYMIFVALRYTTATFVTAFSNIAPVLTFLLAVATRSGALDLK 446
Query: 500 SLRGVAKVAGTVVSFAGVTTMTLYKGAAIT 589
S G+AK+ GT+VS AG +TLYKG A+T
Sbjct: 447 SRTGMAKLLGTLVSLAGAMVLTLYKGVALT 536
>gb|CX611785.1|CX611785 ANR1_26_E06.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_26_E06_A002 5', mRNA sequence
Length = 794
Score = 142 bits (304), Expect = 6e-033
Identities = 55/136 (40%), Positives = 95/136 (69%)
Frame = +2 / +1
Query: 185 YFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMTLMLFVEIFVLSLLGV 364
+ ++ AA + G++ ++ YR+ ++I P AY+LEK RP +TL L ++ F+L+ +GV
Sbjct: 175 HVVSRAALDMGVSKMAFLVYRNGSALLVIAPVAYFLEKKDRPPLTLRLMIDFFMLAAVGV 354
Query: 365 SLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVKSLRGVAKVAGTVVSF 544
+ T +Y L Y SPT+V+ + N++ ++TFV+A +LR+E V+++S G+AK+AGTV++
Sbjct: 355 TFTQGLYILGLYYLSPTYVSVIQNSVPAITFVMAAVLRIEQVNIRSRHGLAKIAGTVITI 534
Query: 545 AGVTTMTLYKGAAITS 592
AG T +TLYKG +T+
Sbjct: 535 AGATIITLYKGMPLTT 582
>gb|CD227487.1|CD227487 CCC1_51_F01.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_51_F01_A007 5', mRNA sequence
Length = 652
Score = 140 bits (301), Expect = 2e-032
Identities = 58/150 (38%), Positives = 98/150 (65%)
Frame = +2 / +1
Query: 140 PHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMT 319
P+V ++ QL YT M+ +++AAFN G+N YV+I YR ++L+ P A LE+ ++
Sbjct: 157 PYVIAIVVQLIYTGMFVVSKAAFNHGMNTYVFIFYRQAAASLLLLPIALVLERKNVTTLS 336
Query: 320 LMLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVK 499
L +++F L+L+G++ +LN+Y SLK+TS T ++ N + +TF A++L+ME V ++
Sbjct: 337 PWLLLKLFFLALIGITFSLNLYNVSLKFTSATVASAATNAMPVVTFCFALLLKMEAVKLR 516
Query: 500 SLRGVAKVAGTVVSFAGVTTMTLYKGAAIT 589
S G+AK+AG + AGV T+ Y G A++
Sbjct: 517 SSSGLAKLAGVSLCLAGVFTIAFYVGPALS 606
>gb|CD221601.1|CD221601 CCC1_55_G07.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_55_G07_A007 5', mRNA sequence
Length = 649
Score = 140 bits (300), Expect = 2e-032
Identities = 58/150 (38%), Positives = 97/150 (64%)
Frame = +2 / +2
Query: 140 PHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMT 319
P+V ++ QL YT M+ +++AAFN G+N YV+I YR ++L+ P A LE+ ++
Sbjct: 152 PYVIAIVVQLIYTGMFVVSKAAFNHGMNTYVFIFYRQAAASLLLLPIALVLERKNVTTLS 331
Query: 320 LMLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVK 499
L + +F L+L+G++ +LN+Y SLK+TS T ++ N + +TF A++L+ME V ++
Sbjct: 332 PWLLLRLFFLALIGITFSLNLYNVSLKFTSATVASAATNAMPVVTFCFALLLKMEAVKLR 511
Query: 500 SLRGVAKVAGTVVSFAGVTTMTLYKGAAIT 589
S G+AK+AG + AGV T+ Y G A++
Sbjct: 512 SSSGLAKLAGVSLCLAGVFTIAFYVGPALS 601
>gb|BE362203.1|BE362203 DG1_85_C03.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 553
Score = 139 bits (299), Expect = 3e-032
Identities = 58/148 (39%), Positives = 92/148 (62%)
Frame = +2 / +2
Query: 143 HVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMTL 322
HV+M+ Q Y + ++ A N G++ V+ YR+++ L+ PFAY+LEK RP++TL
Sbjct: 71 HVEMLALQFGYAGFHVVSRLALNMGISKLVFPVYRNIIALCLLVPFAYFLEKKDRPQLTL 250
Query: 323 MLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVKS 502
++ F+L+L G++ Y L TSPTF +++ N++ ++TF +A LR+E V +
Sbjct: 251 NFVIQFFLLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAALRIEKVRLDR 430
Query: 503 LRGVAKVAGTVVSFAGVTTMTLYKGAAI 586
GVAKVAGT+ AG + +TLYKG I
Sbjct: 431 RDGVAKVAGTLACVAGASVITLYKGPTI 514
>gb|CL150594.1|CL150594 104_332_10778645_116_31358_197 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10778645, DNA
sequence
Length = 774
Score = 138 bits (297), Expect = 5e-032
Identities = 55/59 (93%), Positives = 55/59 (93%)
Frame = +2 / -2
Query: 122 LWRRYAPHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEK 298
LW RYAPHV MVLAQLCYTLMYFITEA FNQGLNPYVYITYRHLLVAVLIWPFAYY EK
Sbjct: 242 LWVRYAPHVLMVLAQLCYTLMYFITEAGFNQGLNPYVYITYRHLLVAVLIWPFAYYQEK 66
Score = 105 bits (224), Expect = 6e-022
Identities = 50/58 (86%), Positives = 50/58 (86%)
Frame = -2 / +1
Query: 297 FSR*YAKGQMRTATSRWR*VM*T*GLRPWLKAASVMKYMSV*HSCASTIWTCGAYLRH 124
FS * AKGQMRTATSR R*VM*T*GL PWLK ASVMKYMSV*HSCASTI TCGAY H
Sbjct: 67 FSW**AKGQMRTATSR*R*VM*T*GLSPWLKPASVMKYMSV*HSCASTISTCGAYRTH 240
>gb|CL152165.1|CL152165 104_335_10779768_116_31364_168 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10779768, DNA
sequence
Length = 696
Score = 90.9 bits (192), Expect(2) = 3e-031
Identities = 37/53 (69%), Positives = 43/53 (81%)
Frame = +2 / -3
Query: 467 IILRMEIVDVKSLRGVAKVAGTVVSFAGVTTMTLYKGAAITSLWKSPVQIAGS 625
+ +RMEIVD KSLRG+ K+AGTVVS AG TTMTLYKG AITS WK P+ + GS
Sbjct: 427 VSIRMEIVDAKSLRGMVKIAGTVVSLAGATTMTLYKGEAITSHWKPPIHMPGS 269
Score = 78.5 bits (165), Expect(2) = 2e-024
Identities = 35/50 (70%), Positives = 39/50 (78%)
Frame = -2 / +3
Query: 624 LPAI*TGDFQRLVMAAPLYRVMVVTPANDTTVPATLATPRRLFTSTISIL 475
LP + G FQ LV+A+PLYRVMVV PA+DTTVPA L PRRL STISIL
Sbjct: 270 LPGMCMGGFQWLVIASPLYRVMVVAPASDTTVPAILTIPRRLLASTISIL 419
Score = 67.0 bits (140), Expect(2) = 3e-031
Identities = 27/34 (79%), Positives = 32/34 (94%)
Frame = +2 / -2
Query: 377 NMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILR 478
N+YF SL+YTSPTFVTS+VNT+ S+TFVIAIILR
Sbjct: 686 NLYFASLEYTSPTFVTSMVNTVPSITFVIAIILR 585
Score = 57.0 bits (118), Expect(2) = 2e-024
Identities = 24/32 (75%), Positives = 26/32 (81%)
Frame = -2 / +1
Query: 477 LRMMAMTNVIEAMVFTTEVTNVGDVYFRLVKY 382
LRM+AMT VIE VFT EVTNVGDVY +L KY
Sbjct: 586 LRMIAMTKVIEGTVFTIEVTNVGDVYSKLAKY 681
>gb|CD219719.1|CD219719 CCC1_58_A06.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_58_A06_A007 5', mRNA sequence
Length = 654
Score = 135 bits (290), Expect = 5e-031
Identities = 54/153 (35%), Positives = 96/153 (62%)
Frame = +2 / +3
Query: 140 PHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMT 319
P++ M+L Q+ + MY + A+ +G++ +V + +R+L ++ PFA + E+ RP+MT
Sbjct: 30 PYLAMILLQVGFAGMYIVAVASLKRGMSHFVLVVHRNLFATAVMAPFALWFERKSRPRMT 209
Query: 320 LMLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVK 499
+ +F++I L+LL L N+YF TS F ++++N + ++TFV+A++LRME V ++
Sbjct: 210 IKIFLKIMGLTLLEPVLDQNLYFMGANLTSAGFASALINILPAVTFVMALVLRMEKVRLR 389
Query: 500 SLRGVAKVAGTVVSFAGVTTMTLYKGAAITSLW 598
S+ AK+ GTV++ AG M LY G + W
Sbjct: 390 SVHSQAKIVGTVLTVAGAVLMILYHGPVVQFPW 488
>gb|CW474312.1|CW474312 fsbb001f230b16k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f230b16, DNA
sequence
Length = 504
Score = 90.9 bits (192), Expect(2) = 1e-030
Identities = 37/53 (69%), Positives = 43/53 (81%)
Frame = +2 / +3
Query: 467 IILRMEIVDVKSLRGVAKVAGTVVSFAGVTTMTLYKGAAITSLWKSPVQIAGS 625
+ +RMEIVD KSLRG+ K+AGTVVS AG TTMTLYKG AITS WK P+ + GS
Sbjct: 267 VSIRMEIVDAKSLRGMVKIAGTVVSLAGATTMTLYKGEAITSHWKPPIHMPGS 425
Score = 78.5 bits (165), Expect(2) = 1e-024
Identities = 35/50 (70%), Positives = 39/50 (78%)
Frame = -2 / -3
Query: 624 LPAI*TGDFQRLVMAAPLYRVMVVTPANDTTVPATLATPRRLFTSTISIL 475
LP + G FQ LV+A+PLYRVMVV PA+DTTVPA L PRRL STISIL
Sbjct: 424 LPGMCMGGFQWLVIASPLYRVMVVAPASDTTVPAILTIPRRLLASTISIL 275
Score = 64.8 bits (135), Expect(2) = 1e-030
Identities = 26/34 (76%), Positives = 32/34 (94%)
Frame = +2 / +2
Query: 377 NMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILR 478
++YF SL+YTSPTFVTS+VNT+ S+TFVIAIILR
Sbjct: 8 HLYFASLEYTSPTFVTSMVNTVPSITFVIAIILR 109
Score = 57.0 bits (118), Expect(2) = 1e-024
Identities = 24/32 (75%), Positives = 26/32 (81%)
Frame = -2 / -1
Query: 477 LRMMAMTNVIEAMVFTTEVTNVGDVYFRLVKY 382
LRM+AMT VIE VFT EVTNVGDVY +L KY
Sbjct: 108 LRMIAMTKVIEGTVFTIEVTNVGDVYSKLAKY 13
>gb|CF434025.1|CF434025 NIT1_31_F11.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_31_F11_A002 5', mRNA sequence
Length = 674
Score = 131 bits (280), Expect = 1e-029
Identities = 55/150 (36%), Positives = 95/150 (63%)
Frame = +2 / +3
Query: 140 PHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMT 319
P+ ++ QL YT ++ I++AAFNQG+N Y++ YR L +VL+ P A +P ++
Sbjct: 96 PYCLAIMVQLIYTGLFVISKAAFNQGINTYIFFFYRQALGSVLLLPIALLQRINAQPIIS 275
Query: 320 LMLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVK 499
++IF +L+G++L +N+Y SLK+TS T ++ ++I ++ F +A++LRME V +
Sbjct: 276 TRGLIKIFFCTLIGITLGVNLYNVSLKFTSATVASAADSSIPAIIFFMAVLLRMEDVKPR 455
Query: 500 SLRGVAKVAGTVVSFAGVTTMTLYKGAAIT 589
S G+AKV G + AGV T+ + G +I+
Sbjct: 456 SSSGIAKVTGIALCLAGVFTIAFFTGPSIS 545
>gb|CL152164.1|CL152164 104_335_10779768_114_31363_168 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10779768, DNA
sequence
Length = 708
Score = 71.2 bits (149), Expect(4) = 5e-029
Identities = 31/45 (68%), Positives = 38/45 (84%)
Frame = +2 / +1
Query: 344 VLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILR 478
++ L VSL N+YF SL+YTSPTFVTS+VNT+ S+TFVIAIILR
Sbjct: 349 LVCLCRVSLGPNLYFASLEYTSPTFVTSMVNTVPSITFVIAIILR 483
Score = 46.9 bits (96), Expect(4) = 5e-029
Identities = 19/22 (86%), Positives = 21/22 (95%)
Frame = +2 / +2
Query: 296 KGLRPKMTLMLFVEIFVLSLLG 361
+GLRPKMT MLF+EIFVLSLLG
Sbjct: 143 RGLRPKMTFMLFLEIFVLSLLG 208
Score = 39.6 bits (80), Expect(4) = 5e-029
Identities = 15/22 (68%), Positives = 19/22 (86%)
Frame = +2 / +2
Query: 467 IILRMEIVDVKSLRGVAKVAGT 532
+ +RMEIVD KSLRG+ K+AGT
Sbjct: 641 VSIRMEIVDAKSLRGMVKIAGT 706
Score = 28.6 bits (56), Expect(4) = 5e-029
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +2 / +2
Query: 263 VLIWPFAYYLEK 298
+L WPFAYY EK
Sbjct: 2 LLYWPFAYYFEK 37
>gb|CW309188.1|CW309188 104_797_11469065_116_35721_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11469065, DNA
sequence
Length = 678
Score = 102 bits (218), Expect(2) = 7e-029
Identities = 38/56 (67%), Positives = 48/56 (85%)
Frame = +2 / -2
Query: 131 RYAPHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEK 298
RY PH M+LAQ+ +TL+YFITEAAFN+GLNPYVY+TYR+LL A ++ PFAY+ EK
Sbjct: 635 RYMPHALMILAQVFFTLLYFITEAAFNRGLNPYVYVTYRYLLAACILCPFAYFYEK 468
Score = 47.3 bits (97), Expect(2) = 7e-029
Identities = 21/36 (58%), Positives = 28/36 (77%)
Frame = +2 / -3
Query: 278 FAYYLEKGLRPKMTLMLFVEIFVLSLLGVSLTLNMY 385
F + L + LRPK+TLMLF+EIFVLSLLG T+ ++
Sbjct: 142 FFFILCRKLRPKITLMLFLEIFVLSLLG*EYTVYVF 35
>gb|CD427874.1|CD427874 ETH1_34_H06.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_34_H06_A002 5', mRNA sequence
Length = 555
Score = 88.1 bits (186), Expect(2) = 6e-027
Identities = 35/106 (33%), Positives = 64/106 (60%)
Frame = +2 / +2
Query: 290 LEKGLRPKMTLMLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAI 469
+ K P +T L V+IF G++ T+N+Y LKY S T +++ N + + F++A+
Sbjct: 212 IRKRPAPPLTFRLSVKIFAHGFYGMAGTINLYCIGLKYASATSSSAIFNIVPVVAFILAV 391
Query: 470 ILRMEIVDVKSLRGVAKVAGTVVSFAGVTTMTLYKGAAITSLWKSP 607
+ RME ++++S+ G+AK +G ++ AGV + LY+G + S+ P
Sbjct: 392 MFRMETLELRSVHGMAKASGILLCVAGVVVLALYQGPQLKSMNHQP 529
Score = 53.8 bits (111), Expect(2) = 6e-027
Identities = 19/48 (39%), Positives = 33/48 (68%)
Frame = +2 / +2
Query: 143 HVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAY 286
+ +VL +L Y M+ +T+AAFN+G + V++ YRH + A+ + PFA+
Sbjct: 62 YATVVLIRLIYAGMHILTKAAFNEGTSTTVFVFYRHAVAAIFLLPFAF 205
>gb|BE361431.1|BE361431 DG1_72_B08.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 512
Score = 120 bits (256), Expect = 2e-026
Identities = 51/144 (35%), Positives = 86/144 (59%)
Frame = +2 / +3
Query: 134 YAPHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPK 313
+ P + M++ L + + + A +GL+ V IT R L+ V + P AY+ E+ RPK
Sbjct: 81 WKPVIAMLVFDLISAVTTALIKKALQEGLDRLVLITLRQLVATVFLAPIAYFRERNTRPK 260
Query: 314 MTLMLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVD 493
+TL + V +F + G +L+ +F L+YT+ TF + N +TF+IA++LR+E ++
Sbjct: 261 LTLEILVYLFFSAAFGAALSQYTFFYGLQYTTATFAITFTNVAPVLTFLIAVLLRVESLN 440
Query: 494 VKSLRGVAKVAGTVVSFAGVTTMT 565
+K+ G AK+ GT+ SFAGV +T
Sbjct: 441 MKNKAGAAKIVGTLTSFAGVMLLT 512
>gb|CN126690.1|CN126690 RHOH1_18_D05.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_18_D05_A002 5', mRNA sequence
Length = 881
Score = 120 bits (256), Expect = 2e-026
Identities = 49/152 (32%), Positives = 91/152 (59%)
Frame = +2 / +3
Query: 137 APHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKM 316
A V L + Y M +T+AAF++G++ V++ YRHL + + P A+ LE+ P +
Sbjct: 126 AAFVVAFLLRAIYGGMQIVTKAAFDEGMSTSVFVFYRHLTGILFLVPIAFVLERKTAPPL 305
Query: 317 TLMLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDV 496
+ + +++F +L G++ +N+Y L Y+S T +++ N + ++ F +A++LRME +++
Sbjct: 306 SFKVSLKLFFHALYGIAGAINIYGLGLSYSSATSSSAIFNLLPAVAFFLAVLLRMETLNL 485
Query: 497 KSLRGVAKVAGTVVSFAGVTTMTLYKGAAITS 592
K G+AK +G + S AGV + Y+G A S
Sbjct: 486 KRFHGIAKASGVLFSIAGVIVLAFYQGPAFRS 581
>gb|CX614824.1|CX614824 GABR1_16_C08.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_16_C08_A002 5', mRNA sequence
Length = 815
Score = 120 bits (256), Expect = 2e-026
Identities = 49/152 (32%), Positives = 91/152 (59%)
Frame = +2 / +1
Query: 137 APHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKM 316
A V L + Y M +T+AAF++G++ V++ YRHL + + P A+ LE+ P +
Sbjct: 127 AAFVVAFLLRAIYGGMQIVTKAAFDEGMSTSVFVFYRHLTGILFLVPIAFVLERKTAPPL 306
Query: 317 TLMLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDV 496
+ + +++F +L G++ +N+Y L Y+S T +++ N + ++ F +A++LRME +++
Sbjct: 307 SFKVSLKLFFHALYGIAGAINIYGLGLSYSSATSSSAIFNLLPAVAFFLAVLLRMETLNL 486
Query: 497 KSLRGVAKVAGTVVSFAGVTTMTLYKGAAITS 592
K G+AK +G + S AGV + Y+G A S
Sbjct: 487 KRFHGIAKASGVLFSIAGVIVLAFYQGPAFRS 582
>gb|CD423198.1|CD423198 SA1_27_D12.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_27_D12_A002 5', mRNA sequence
Length = 682
Score = 85.8 bits (181), Expect(2) = 3e-026
Identities = 34/102 (33%), Positives = 62/102 (60%)
Frame = +2 / +3
Query: 290 LEKGLRPKMTLMLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAI 469
+ K P +T L V+IF G++ T+N+Y LKY S T +++ N + + F++A+
Sbjct: 231 IRKRPAPPLTFRLSVKIFAHGFYGMAGTINLYCIGLKYASATSSSAIFNIVPVVAFILAV 410
Query: 470 ILRMEIVDVKSLRGVAKVAGTVVSFAGVTTMTLYKGAAITSL 595
+ RME + ++S+ G+AK +G ++ AGV + LY+G + S+
Sbjct: 411 MFRMETLKLRSVHGMAKASGILLCVAGVVVLALYQGPQLKSM 536
Score = 53.8 bits (111), Expect(2) = 3e-026
Identities = 19/48 (39%), Positives = 33/48 (68%)
Frame = +2 / +3
Query: 143 HVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAY 286
+ +VL +L Y M+ +T+AAFN+G + V++ YRH + A+ + PFA+
Sbjct: 81 YATVVLIRLIYAGMHILTKAAFNEGTSTTVFVFYRHAVAAIFLLPFAF 224
>gb|BG488194.1|BG488194 RHIZ2_60_F08.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 531
Score = 117 bits (251), Expect = 1e-025
Identities = 46/115 (40%), Positives = 82/115 (71%)
Frame = +2 / +2
Query: 140 PHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMT 319
P++ MVL Q+ ++ MY ++ A+ +G+N +V + YR+L+ V++ PFA E+G+RPKMT
Sbjct: 176 PYLAMVLLQVGFSGMYIVSVASLKRGMNHFVLVVYRNLVATVVMAPFALVFERGVRPKMT 355
Query: 320 LMLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRME 484
++F++I L++L L NMY+ K TS TF +++VN + ++TF++A+++RME
Sbjct: 356 PLIFLKIMGLAVLEPVLDQNMYYLGAKLTSATFGSALVNILPAITFLLALVMRME 520
>gb|CL188229.1|CL188229 104_404_10901450_114_32445_007 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10901450, DNA
sequence
Length = 694
Score = 117 bits (250), Expect = 2e-025
Identities = 50/54 (92%), Positives = 52/54 (96%)
Frame = +2 / +1
Query: 476 RMEIVDVKSLRGVAKVAGTVVSFAGVTTMTLYKGAAITSLWKSPVQIAGSGSGG 637
RMEIVDVKSLRG+AK+AGTVVSFAGVTTMTLYKGAAITSLWKSPV I GSGSGG
Sbjct: 139 RMEIVDVKSLRGLAKIAGTVVSFAGVTTMTLYKGAAITSLWKSPVHIPGSGSGG 300
Score = 116 bits (249), Expect = 2e-025
Identities = 50/55 (90%), Positives = 52/55 (94%)
Frame = -2 / -3
Query: 636 PPLPLPAI*TGDFQRLVMAAPLYRVMVVTPANDTTVPATLATPRRLFTSTISILR 472
PPLPLP I*TGDFQRLVMAAPLYRVMVVTPA DTTVPA LA+PRRLFTSTISIL+
Sbjct: 299 PPLPLPGI*TGDFQRLVMAAPLYRVMVVTPAKDTTVPAILASPRRLFTSTISILK 135
>gb|CW227174.1|CW227174 104_665_11205274_148_37225_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11205274, DNA
sequence
Length = 686
Score = 117 bits (250), Expect = 2e-025
Identities = 50/54 (92%), Positives = 52/54 (96%)
Frame = +2 / +2
Query: 476 RMEIVDVKSLRGVAKVAGTVVSFAGVTTMTLYKGAAITSLWKSPVQIAGSGSGG 637
RMEIVDVKSLRG+AK+AGTVVSFAGVTTMTLYKGAAITSLWKSPV I GSGSGG
Sbjct: 116 RMEIVDVKSLRGLAKIAGTVVSFAGVTTMTLYKGAAITSLWKSPVHIPGSGSGG 277
Score = 116 bits (249), Expect = 2e-025
Identities = 50/55 (90%), Positives = 52/55 (94%)
Frame = -2 / -3
Query: 636 PPLPLPAI*TGDFQRLVMAAPLYRVMVVTPANDTTVPATLATPRRLFTSTISILR 472
PPLPLP I*TGDFQRLVMAAPLYRVMVVTPA DTTVPA LA+PRRLFTSTISIL+
Sbjct: 276 PPLPLPGI*TGDFQRLVMAAPLYRVMVVTPAKDTTVPAILASPRRLFTSTISILK 112
>gb|CW039493.1|CW039493 104_272_10505533_115_30390 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10505533, DNA
sequence
Length = 698
Score = 115 bits (245), Expect = 8e-025
Identities = 49/132 (37%), Positives = 80/132 (60%)
Frame = +2 / -2
Query: 143 HVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMTL 322
HV M+ Q Y + ++ A N G++ V+ YR+L+ L+ PFAY+LEK RP MT
Sbjct: 397 HVAMLALQFGYAGFHVVSRLALNMGVSKLVFPVYRNLIALCLLAPFAYFLEKKDRPAMTP 218
Query: 323 MLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVKS 502
++ F+L+L G++ Y L TSPTF +++ N++ ++TF +A L +E V ++
Sbjct: 217 AFLLQFFLLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAALGIERVRLRR 38
Query: 503 LRGVAKVAGTVV 538
G+AKVAGT++
Sbjct: 37 RDGLAKVAGTML 2
>gb|CW785005.1|CW785005 SP__Ba0006M14.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0006M14 3', DNA sequence
Length = 971
Score = 90.9 bits (192), Expect(2) = 2e-024
Identities = 34/55 (61%), Positives = 46/55 (83%)
Frame = +2 / +3
Query: 470 ILRMEIVDVKSLRGVAKVAGTVVSFAGVTTMTLYKGAAITSLWKSPVQIAGSGSG 634
I+RMEIVDVK+LRG+AK+AGT+VS AG TTM+LY+GA + +W++P+ I G G G
Sbjct: 171 IIRMEIVDVKTLRGLAKIAGTMVSLAGATTMSLYRGAPVKRMWRAPIHIHGGGGG 335
Score = 42.8 bits (87), Expect(2) = 2e-024
Identities = 17/24 (70%), Positives = 22/24 (91%)
Frame = +2 / +1
Query: 404 TSPTFVTSVVNTIASMTFVIAIIL 475
TSPTFVTS++ +AS+TFVIAI+L
Sbjct: 1 TSPTFVTSMITLMASITFVIAIVL 72
>gb|CX606918.1|CX606918 ANR1_5_E02.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_5_E02_A002 5', mRNA sequence
Length = 771
Score = 113 bits (241), Expect = 3e-024
Identities = 46/135 (34%), Positives = 86/135 (63%)
Frame = +2 / +3
Query: 191 ITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMTLMLFVEIFVLSLLGVSL 370
+++AAF++GL+ +V++ YR ++ + P A L + P ++ L ++F+ +L G +L
Sbjct: 102 LSKAAFDRGLSTFVFVFYRLAAASLFLLPLAILLARRSAPPLSFRLLAKMFLYALAGNTL 281
Query: 371 TLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVKSLRGVAKVAGTVVSFAG 550
+LN+ SLKYTS T +++ N+I +TF +A+++RME++++K G K AG AG
Sbjct: 282 SLNLANVSLKYTSTTVASAMCNSIPVITFFLALLMRMEVINLKRPSGKGKAAGITFCLAG 461
Query: 551 VTTMTLYKGAAITSL 595
V + LY G++++ L
Sbjct: 462 VLVIALYAGSSLSPL 506
>gb|CX622584.1|CX622584 GABR1_64_G04.g2_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_64_G04_A002 5', mRNA sequence
Length = 803
Score = 113 bits (241), Expect = 3e-024
Identities = 46/135 (34%), Positives = 86/135 (63%)
Frame = +2 / +2
Query: 191 ITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMTLMLFVEIFVLSLLGVSL 370
+++AAF++GL+ +V++ YR ++ + P A L + P ++ L ++F+ +L G +L
Sbjct: 101 LSKAAFDRGLSTFVFVFYRLAAASLFLLPLAILLARRSAPPLSFRLLAKMFLYALAGNTL 280
Query: 371 TLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVKSLRGVAKVAGTVVSFAG 550
+LN+ SLKYTS T +++ N+I +TF +A+++RME++++K G K AG AG
Sbjct: 281 SLNLANVSLKYTSTTVASAMCNSIPVITFFLALLMRMEVINLKRPSGKGKAAGITFCLAG 460
Query: 551 VTTMTLYKGAAITSL 595
V + LY G++++ L
Sbjct: 461 VLVIALYAGSSLSPL 505
>gb|AW565320.1|AW565320 LG1_342_A12.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 581
Score = 111 bits (238), Expect = 8e-024
Identities = 49/158 (31%), Positives = 88/158 (55%)
Frame = +2 / +3
Query: 131 RYAPHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRP 310
R+ H MVL L Y+ + +T++ N G+N V+ YR LL ++ P A+ E+ +RP
Sbjct: 45 RWRAHAGMVLVMLAYSGYHVLTKSVLNVGMNQVVFCVYRDLLAFAVLAPVAFLRERRVRP 224
Query: 311 KMTLMLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIV 490
+T L +L G+ ++ L+YT+ ++ + +I +TF++A I+ +E +
Sbjct: 225 PVTPQLLASFALLGFTGLYGNPLLFLVGLRYTNASYAAAFQPSIPVLTFLLAAIVGVEAI 404
Query: 491 DVKSLRGVAKVAGTVVSFAGVTTMTLYKGAAITSLWKS 604
++ + GV KV GTVV +G M LY+G+++ L +S
Sbjct: 405 NIFTKDGVLKVIGTVVCVSGAILMALYRGSSLIGLTRS 518
>gb|CW222636.1|CW222636 104_658_11202482_148_37179_011 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11202482, DNA
sequence
Length = 731
Score = 82.6 bits (174), Expect(2) = 5e-023
Identities = 35/80 (43%), Positives = 51/80 (63%)
Frame = +2 / -1
Query: 122 LWRRYAPHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKG 301
L +R P+V M+ Q Y M IT+ + N G++ YV + YRH + I PFA LE+
Sbjct: 611 LMQRCKPYVAMISLQFGYAGMNVITKVSLNHGMSHYVLVVYRHAFATLSIAPFALVLERK 432
Query: 302 LRPKMTLMLFVEIFVLSLLG 361
+RP+MT +F++IFVL+LLG
Sbjct: 431 VRPRMTPWVFLQIFVLALLG 372
Score = 46.0 bits (94), Expect(2) = 5e-023
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +2 / -3
Query: 377 NMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILR 478
N Y+ LK+TSPTF ++ N + +MTF++A++ R
Sbjct: 249 NFYYAGLKFTSPTFSCAMSNMLPAMTFILAVLFR 148
>gb|CW111937.1|CW111937 104_485_11104609_116_34537_005 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11104609, DNA
sequence
Length = 642
Score = 82.6 bits (174), Expect(2) = 2e-022
Identities = 35/80 (43%), Positives = 51/80 (63%)
Frame = +2 / -3
Query: 122 LWRRYAPHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKG 301
L +R P+V M+ Q Y M IT+ + N G++ YV + YRH + I PFA LE+
Sbjct: 520 LMQRCKPYVAMISLQFGYAGMNVITKVSLNHGMSHYVLVVYRHAFATLSIAPFALVLERK 341
Query: 302 LRPKMTLMLFVEIFVLSLLG 361
+RP+MT +F++IFVL+LLG
Sbjct: 340 VRPRMTPWVFLQIFVLALLG 281
Score = 46.0 bits (94), Expect(2) = 2e-022
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +2 / -2
Query: 377 NMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILR 478
N Y+ LK+TSPTF ++ N + +MTF++A++ R
Sbjct: 158 NFYYAGLKFTSPTFSCAMSNMLPAMTFILAVLFR 57
>gb|BG241298.1|BG241298 OV1_40_F02.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 499
Score = 107 bits (228), Expect = 2e-022
Identities = 42/111 (37%), Positives = 75/111 (67%)
Frame = +2 / +3
Query: 185 YFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMTLMLFVEIFVLSLLGV 364
+ ++ AA + G++ ++ YR+ ++I P AY+LEK RP +TL L ++ F+L+ +GV
Sbjct: 165 HVVSRAALDMGVSKMAFLVYRNGSALLVIAPVAYFLEKKDRPPLTLRLMIDFFMLAAVGV 344
Query: 365 SLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVKSLRGVA 517
+ T +Y L Y SPT+V+ + N++ ++TFV+A +LR+E V++KS G+A
Sbjct: 345 TFTQGLYILGLYYLSPTYVSVIQNSVPAITFVMAAVLRIEQVNIKSRHGLA 497
>gb|BZ691344.1|BZ691344 SP__Ba0006M14.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0006M14 3', DNA sequence
Length = 1127
Score = 90.9 bits (192), Expect(2) = 6e-022
Identities = 34/55 (61%), Positives = 46/55 (83%)
Frame = +2 / +1
Query: 470 ILRMEIVDVKSLRGVAKVAGTVVSFAGVTTMTLYKGAAITSLWKSPVQIAGSGSG 634
I+RMEIVDVK+LRG+AK+AGT+VS AG TTM+LY+GA + +W++P+ I G G G
Sbjct: 172 IIRMEIVDVKTLRGLAKIAGTMVSLAGATTMSLYRGAPVKRMWRAPIHIHGGGGG 336
Score = 34.1 bits (68), Expect(2) = 6e-022
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = +2 / +2
Query: 416 FVTSVVNTIASMTFVIAIIL 475
FVTS++ +AS+TFVIAI+L
Sbjct: 14 FVTSMITLVASITFVIAIVL 73
>gb|BE360355.1|BE360355 DG1_63_A09.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 517
Score = 105 bits (223), Expect = 9e-022
Identities = 41/114 (35%), Positives = 70/114 (61%)
Frame = +2 / +3
Query: 143 HVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMTL 322
HV M+ Q Y + ++ A N G++ V+ YR+++ L+ PFAY+LEK RP++TL
Sbjct: 174 HVAMLALQFGYAGFHVVSRLALNMGISKLVFPVYRNIIALCLLVPFAYFLEKKDRPQLTL 353
Query: 323 MLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRME 484
++ F+L+L G++ Y L TSPTF +++ N++ ++TF +A LR+E
Sbjct: 354 NFVIQFFLLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAALRIE 515
>gb|CX609975.1|CX609975 ANR1_15_H05.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_15_H05_A002 5', mRNA sequence
Length = 798
Score = 104 bits (221), Expect = 2e-021
Identities = 45/142 (31%), Positives = 83/142 (58%)
Frame = +2 / +1
Query: 152 MVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMTLMLF 331
+VL +L Y+ M+ +++ A +QG+NP V++ YRH A+++ P + LE+ +TL +
Sbjct: 361 VVLIRLMYSGMHVMSKVALDQGMNPLVFLFYRHTTAALVLIPVTFVLERRKAKPVTLKIG 540
Query: 332 VEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVKSLRG 511
++F+ +L GV+ +++ L Y S T +++ N +TF++A+I ME + + G
Sbjct: 541 WKMFIHALYGVTACGDLFNLGLNYASATSSSALYNVQPVVTFILAVIFGMETLKLTRFHG 720
Query: 512 VAKVAGTVVSFAGVTTMTLYKG 577
K AG + AGVT + Y+G
Sbjct: 721 KVKFAGILFCVAGVTILAFYQG 786
>gb|CW309189.1|CW309189 104_797_11469065_148_35725_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11469065, DNA
sequence
Length = 616
Score = 102 bits (218), Expect = 4e-021
Identities = 38/56 (67%), Positives = 48/56 (85%)
Frame = +2 / +3
Query: 131 RYAPHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEK 298
RY PH M+LAQ+ +TL+YFITEAAFN+GLNPYVY+TYR+LL A ++ PFAY+ EK
Sbjct: 441 RYMPHALMILAQVFFTLLYFITEAAFNRGLNPYVYVTYRYLLAACILCPFAYFYEK 608
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 530,664,784
Number of Sequences: 832831
Number of extensions: 5942901
Number of successful extensions: 76464
Number of sequences better than 1.0e-020: 50
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 18904149054
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)