TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3199064.2.1
(589 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI074615.1|BI074615 IP1_13_D04.b1_A002 Immature pannicle... 175 5e-043
gb|CD226389.1|CD226389 CCC1_45_A06.g1_A007 Callus culture/c... 175 5e-043
gb|CN129510.1|CN129510 RHOH1_35_G06.g1_A002 Acid- and alkal... 175 5e-043
gb|AW672012.1|AW672012 LG1_354_E07.b1_A002 Light Grown 1 (L... 173 2e-042
gb|BE918873.1|BE918873 FM1_1_C06.b1_A003 Floral-Induced Mer... 173 2e-042
gb|BF586670.1|BF586670 FM1_30_D05.b1_A003 Floral-Induced Me... 173 2e-042
gb|BG050594.1|BG050594 FM1_69_D11.b1_A003 Floral-Induced Me... 173 2e-042
gb|BG158332.1|BG158332 FM1_59_A05.b1_A003 Floral-Induced Me... 173 2e-042
gb|CD230046.1|CD230046 SS1_40_E02.g1_A012 Salt-stressed see... 173 2e-042
gb|CN125231.1|CN125231 RHOH1_9_G11.g1_A002 Acid- and alkali... 173 2e-042
gb|CX607088.1|CX607088 ANR1_6_D07.g1_A002 Anaerobic roots S... 173 2e-042
gb|DN552309.1|DN552309 pSPR-RT-A-H1_B06_C219 pSPR Sorghum p... 173 2e-042
gb|BG487683.1|BG487683 FM1_73_A08.b1_A003 Floral-Induced Me... 155 5e-037
gb|BG158397.1|BG158397 FM1_60_A07.b1_A003 Floral-Induced Me... 139 8e-037
gb|CL164693.1|CL164693 104_359_10808084_114_31816_068 Sorgh... 88 4e-034
gb|CL163070.1|CL163070 104_356_10806873_116_31811_009 Sorgh... 88 4e-034
gb|CW170569.1|CW170569 104_581_11155275_148_36522_016 Sorgh... 91 1e-033
gb|CL154120.1|CL154120 104_339_10781170_116_31372_034 Sorgh... 91 1e-033
gb|AW671000.1|AW671000 LG1_278_G10.b1_A002 Light Grown 1 (L... 144 1e-033
gb|BF421850.1|BF421850 FM1_11_B10.b1_A003 Floral-Induced Me... 143 2e-033
gb|CW170568.1|CW170568 104_581_11155275_116_36521_016 Sorgh... 90 3e-033
gb|CN125652.1|CN125652 RHOH1_12_A02.g1_A002 Acid- and alkal... 138 7e-032
gb|BG053906.1|BG053906 RHIZ2_11_D11.b1_A003 Rhizome2 (RHIZ2... 136 2e-031
gb|BI098852.1|BI098852 IP1_34_A09.b1_A002 Immature pannicle... 136 2e-031
gb|CN125903.1|CN125903 RHOH1_14_C02.b1_A002 Acid- and alkal... 82 2e-029
gb|CN132591.1|CN132591 OX1_7_C07.b1_A002 Oxidatively-stress... 82 2e-029
gb|BG239828.1|BG239828 OV1_29_E09.g1_A002 Ovary 1 (OV1) Sor... 82 2e-029
gb|CN132678.1|CN132678 OX1_7_C07.g1_A002 Oxidatively-stress... 82 3e-029
gb|CF759443.1|CF759443 DSAF1_45_D03.b1_A011 Drought-stresse... 82 6e-029
gb|CD430680.1|CD430680 ETH1_20_G04.b1_A002 Ethylene-treated... 82 1e-028
gb|BQ656079.1|BQ656079 pRC1044 Sorghum halepense rhizome cD... 79 4e-025
gb|BE367438.1|BE367438 PI1_8_D02.b1_A002 Pathogen induced 1... 105 6e-022
gb|BI246111.1|BI246111 IP1_67_A03.b1_A002 Immature pannicle... 105 6e-022
gb|BG355607.2|BG355607 EM1_19_H10.b1_A002 Embryo 1 (EM1) So... 105 6e-022
gb|CL172141.1|CL172141 104_374_10889941_116_31775_229 Sorgh... 104 1e-021
gb|BF586164.1|BF586164 FM1_26_E04.b1_A003 Floral-Induced Me... 104 1e-021
gb|CW025345.1|CW025345 104_226_10488139_116_30526 Sorghum m... 103 2e-021
gb|BG487757.1|BG487757 FM1_73_H05.b1_A003 Floral-Induced Me... 102 5e-021
>gb|BI074615.1|BI074615 IP1_13_D04.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 493
Score = 175 bits (377), Expect = 5e-043
Identities = 73/102 (71%), Positives = 85/102 (83%)
Frame = +3 / +3
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLD 182
RVVHGIDVFDPKFNIVSPGADMS+Y+P+TE KRLT+ H IE LIY +NDEH L
Sbjct: 177 RVVHGIDVFDPKFNIVSPGADMSVYYPYTETDKRLTAFHPEIEELIYSDVENDEHKFVLK 356
Query: 183 DRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVVA 308
D++KPI+FSMARLDRVKN+TGLVE + K A+LREL NLV+VA
Sbjct: 357 DKNKPIIFSMARLDRVKNMTGLVEMYGKNARLRELANLVIVA 482
>gb|CD226389.1|CD226389 CCC1_45_A06.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_45_A06_A007 5', mRNA sequence
Length = 662
Score = 175 bits (377), Expect = 5e-043
Identities = 73/102 (71%), Positives = 85/102 (83%)
Frame = +3 / +2
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLD 182
RVVHGIDVFDPKFNIVSPGADMS+Y+P+TE KRLT+ H IE LIY +NDEH L
Sbjct: 143 RVVHGIDVFDPKFNIVSPGADMSVYYPYTETDKRLTAFHPEIEELIYSDVENDEHKFVLK 322
Query: 183 DRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVVA 308
D++KPI+FSMARLDRVKN+TGLVE + K A+LREL NLV+VA
Sbjct: 323 DKNKPIIFSMARLDRVKNMTGLVEMYGKNARLRELANLVIVA 448
>gb|CN129510.1|CN129510 RHOH1_35_G06.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_35_G06_A002 5', mRNA sequence
Length = 814
Score = 175 bits (377), Expect = 5e-043
Identities = 73/102 (71%), Positives = 85/102 (83%)
Frame = +3 / +2
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLD 182
RVVHGIDVFDPKFNIVSPGADMS+Y+P+TE KRLT+ H IE LIY +NDEH L
Sbjct: 278 RVVHGIDVFDPKFNIVSPGADMSVYYPYTETDKRLTAFHPEIEELIYSDVENDEHKFVLK 457
Query: 183 DRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVVA 308
D++KPI+FSMARLDRVKN+TGLVE + K A+LREL NLV+VA
Sbjct: 458 DKNKPIIFSMARLDRVKNMTGLVEMYGKNARLRELANLVIVA 583
>gb|AW672012.1|AW672012 LG1_354_E07.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 468
Score = 173 bits (373), Expect = 2e-042
Identities = 73/101 (72%), Positives = 85/101 (84%)
Frame = +3 / +2
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLD 182
RVVHGIDVFDPKFNIVSPGAD+SIYFP+TE KRLTSLH IE L+Y +N EH L+
Sbjct: 53 RVVHGIDVFDPKFNIVSPGADLSIYFPYTESHKRLTSLHPEIEELLYSQTENTEHKFVLN 232
Query: 183 DRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVV 305
DR+KPI+FSMARLDRVKN+TGLVE + + +L+ELVNLVVV
Sbjct: 233 DRNKPIIFSMARLDRVKNLTGLVELYGRNKRLQELVNLVVV 355
>gb|BE918873.1|BE918873 FM1_1_C06.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 498
Score = 173 bits (373), Expect = 2e-042
Identities = 73/101 (72%), Positives = 85/101 (84%)
Frame = +3 / +2
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLD 182
RVVHGIDVFDPKFNIVSPGAD+SIYFP+TE KRLTSLH IE L+Y +N EH L+
Sbjct: 164 RVVHGIDVFDPKFNIVSPGADLSIYFPYTESHKRLTSLHPEIEELLYSQTENTEHKFVLN 343
Query: 183 DRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVV 305
DR+KPI+FSMARLDRVKN+TGLVE + + +L+ELVNLVVV
Sbjct: 344 DRNKPIIFSMARLDRVKNLTGLVELYGRNKRLQELVNLVVV 466
>gb|BF586670.1|BF586670 FM1_30_D05.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 440
Score = 173 bits (373), Expect = 2e-042
Identities = 73/101 (72%), Positives = 85/101 (84%)
Frame = +3 / +1
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLD 182
RVVHGIDVFDPKFNIVSPGAD+SIYFP+TE KRLTSLH IE L+Y +N EH L+
Sbjct: 31 RVVHGIDVFDPKFNIVSPGADLSIYFPYTESHKRLTSLHPEIEELLYSQTENTEHKFVLN 210
Query: 183 DRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVV 305
DR+KPI+FSMARLDRVKN+TGLVE + + +L+ELVNLVVV
Sbjct: 211 DRNKPIIFSMARLDRVKNLTGLVELYGRNKRLQELVNLVVV 333
>gb|BG050594.1|BG050594 FM1_69_D11.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 526
Score = 173 bits (373), Expect = 2e-042
Identities = 73/101 (72%), Positives = 85/101 (84%)
Frame = +3 / +2
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLD 182
RVVHGIDVFDPKFNIVSPGAD+SIYFP+TE KRLTSLH IE L+Y +N EH L+
Sbjct: 212 RVVHGIDVFDPKFNIVSPGADLSIYFPYTESHKRLTSLHPEIEELLYSQTENTEHKFVLN 391
Query: 183 DRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVV 305
DR+KPI+FSMARLDRVKN+TGLVE + + +L+ELVNLVVV
Sbjct: 392 DRNKPIIFSMARLDRVKNLTGLVELYGRNKRLQELVNLVVV 514
>gb|BG158332.1|BG158332 FM1_59_A05.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 523
Score = 173 bits (373), Expect = 2e-042
Identities = 73/101 (72%), Positives = 85/101 (84%)
Frame = +3 / +3
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLD 182
RVVHGIDVFDPKFNIVSPGAD+SIYFP+TE KRLTSLH IE L+Y +N EH L+
Sbjct: 57 RVVHGIDVFDPKFNIVSPGADLSIYFPYTESHKRLTSLHPEIEELLYSQTENTEHKFVLN 236
Query: 183 DRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVV 305
DR+KPI+FSMARLDRVKN+TGLVE + + +L+ELVNLVVV
Sbjct: 237 DRNKPIIFSMARLDRVKNLTGLVELYGRNKRLQELVNLVVV 359
>gb|CD230046.1|CD230046 SS1_40_E02.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_40_E02_A012 5', mRNA sequence
Length = 535
Score = 173 bits (373), Expect = 2e-042
Identities = 73/101 (72%), Positives = 85/101 (84%)
Frame = +3 / +2
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLD 182
RVVHGIDVFDPKFNIVSPGAD+SIYFP+TE KRLTSLH IE L+Y +N EH L+
Sbjct: 143 RVVHGIDVFDPKFNIVSPGADLSIYFPYTESHKRLTSLHPEIEELLYSQTENTEHKFVLN 322
Query: 183 DRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVV 305
DR+KPI+FSMARLDRVKN+TGLVE + + +L+ELVNLVVV
Sbjct: 323 DRNKPIIFSMARLDRVKNLTGLVELYGRNKRLQELVNLVVV 445
>gb|CN125231.1|CN125231 RHOH1_9_G11.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_9_G11_A002 5', mRNA sequence
Length = 822
Score = 173 bits (373), Expect = 2e-042
Identities = 73/101 (72%), Positives = 85/101 (84%)
Frame = +3 / +2
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLD 182
RVVHGIDVFDPKFNIVSPGAD+SIYFP+TE KRLTSLH IE L+Y +N EH L+
Sbjct: 98 RVVHGIDVFDPKFNIVSPGADLSIYFPYTESHKRLTSLHPEIEELLYSQTENTEHKFVLN 277
Query: 183 DRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVV 305
DR+KPI+FSMARLDRVKN+TGLVE + + +L+ELVNLVVV
Sbjct: 278 DRNKPIIFSMARLDRVKNLTGLVELYGRNKRLQELVNLVVV 400
>gb|CX607088.1|CX607088 ANR1_6_D07.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_6_D07_A002 5', mRNA sequence
Length = 841
Score = 173 bits (373), Expect = 2e-042
Identities = 73/101 (72%), Positives = 85/101 (84%)
Frame = +3 / +2
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLD 182
RVVHGIDVFDPKFNIVSPGAD+SIYFP+TE KRLTSLH IE L+Y +N EH L+
Sbjct: 347 RVVHGIDVFDPKFNIVSPGADLSIYFPYTESHKRLTSLHPEIEELLYSQTENTEHKFVLN 526
Query: 183 DRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVV 305
DR+KPI+FSMARLDRVKN+TGLVE + + +L+ELVNLVVV
Sbjct: 527 DRNKPIIFSMARLDRVKNLTGLVELYGRNKRLQELVNLVVV 649
>gb|DN552309.1|DN552309 pSPR-RT-A-H1_B06_C219 pSPR Sorghum propinquum cDNA, mRNA sequence
Length = 822
Score = 173 bits (373), Expect = 2e-042
Identities = 73/101 (72%), Positives = 85/101 (84%)
Frame = +3 / +2
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLD 182
RVVHGIDVFDPKFNIVSPGAD+SIYFP+TE KRLTSLH IE L+Y +N EH L+
Sbjct: 146 RVVHGIDVFDPKFNIVSPGADLSIYFPYTESHKRLTSLHPEIEELLYSQTENTEHKFVLN 325
Query: 183 DRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVV 305
DR+KPI+FSMARLDRVKN+TGLVE + + +L+ELVNLVVV
Sbjct: 326 DRNKPIIFSMARLDRVKNLTGLVELYGRNKRLQELVNLVVV 448
>gb|BG487683.1|BG487683 FM1_73_A08.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 597
Score = 155 bits (333), Expect = 5e-037
Identities = 64/86 (74%), Positives = 73/86 (84%)
Frame = +3 / +2
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLD 182
RVVHGIDVFDPKFNIVSPGAD+SIYFP+TE KRLTSLH IE L+Y +N EH L+
Sbjct: 329 RVVHGIDVFDPKFNIVSPGADLSIYFPYTESHKRLTSLHPEIEELLYSQTENTEHKFVLN 508
Query: 183 DRSKPILFSMARLDRVKNITGLVEAF 260
DR+KPI+FSMARLDRVKN+TGLVE +
Sbjct: 509 DRNKPIIFSMARLDRVKNLTGLVELY 586
>gb|BG158397.1|BG158397 FM1_60_A07.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 441
Score = 139 bits (298), Expect(2) = 8e-037
Identities = 60/91 (65%), Positives = 72/91 (79%)
Frame = +3 / +1
Query: 33 PKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLDDRSKPILFSM 212
P IVSPGAD+SIYFP+TE KRLTSLH IE L+Y +N EH L+DR+KPI+FSM
Sbjct: 58 P*VQIVSPGADLSIYFPYTESHKRLTSLHPEIEELLYSQTENTEHKFVLNDRNKPIIFSM 237
Query: 213 ARLDRVKNITGLVEAFAKCAKLRELVNLVVV 305
ARLDRVKN+TGLVE + + +L+ELVNLVVV
Sbjct: 238 ARLDRVKNLTGLVELYGRNKRLQELVNLVVV 330
Score = 35.4 bits (71), Expect(2) = 8e-037
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3 / +2
Query: 3 RVVHGIDVFDPKF 41
RVVHGIDVFDPKF
Sbjct: 29 RVVHGIDVFDPKF 67
>gb|CL164693.1|CL164693 104_359_10808084_114_31816_068 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10808084, DNA
sequence
Length = 787
Score = 88.1 bits (186), Expect(2) = 4e-034
Identities = 34/56 (60%), Positives = 41/56 (73%)
Frame = +3 / +1
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHI 170
R GI+VFDPKFNI +PGAD SIYFP T+K KRLT LH IE L+Y + +EH+
Sbjct: 196 RYATGINVFDPKFNIAAPGADQSIYFPFTQKQKRLTDLHPQIEELLYSKQDTNEHM 363
Score = 77.6 bits (163), Expect(2) = 4e-034
Identities = 33/46 (71%), Positives = 41/46 (89%)
Frame = +3 / +3
Query: 171 GHLDDRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVVA 308
G+L DR+KPI+FSMARLD+VKNITGLVE + + +LR+LVNLVVVA
Sbjct: 453 GYLADRNKPIIFSMARLDKVKNITGLVEWYGQNKRLRDLVNLVVVA 590
>gb|CL163070.1|CL163070 104_356_10806873_116_31811_009 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10806873, DNA
sequence
Length = 649
Score = 88.1 bits (186), Expect(2) = 4e-034
Identities = 34/56 (60%), Positives = 41/56 (73%)
Frame = +3 / -3
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHI 170
R GI+VFDPKFNI +PGAD SIYFP T+K KRLT LH IE L+Y + +EH+
Sbjct: 566 RYATGINVFDPKFNIAAPGADQSIYFPFTQKQKRLTDLHPQIEELLYSKQDTNEHM 399
Score = 77.6 bits (163), Expect(2) = 4e-034
Identities = 33/46 (71%), Positives = 41/46 (89%)
Frame = +3 / -2
Query: 171 GHLDDRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVVA 308
G+L DR+KPI+FSMARLD+VKNITGLVE + + +LR+LVNLVVVA
Sbjct: 309 GYLADRNKPIIFSMARLDKVKNITGLVEWYGQNKRLRDLVNLVVVA 172
>gb|CW170569.1|CW170569 104_581_11155275_148_36522_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11155275, DNA
sequence
Length = 742
Score = 91.3 bits (193), Expect(2) = 1e-033
Identities = 36/56 (64%), Positives = 42/56 (75%)
Frame = +3 / +3
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHI 170
R GI+VFDPKFNI +PGAD S+YFP T K KRLT LH IE L+Y E+NDEH+
Sbjct: 135 RFATGINVFDPKFNIAAPGADQSVYFPFTLKHKRLTDLHPQIEALVYGKEENDEHM 302
Score = 72.5 bits (152), Expect(2) = 1e-033
Identities = 31/49 (63%), Positives = 40/49 (81%)
Frame = +3 / +3
Query: 159 DEHIGHLDDRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVV 305
D G+L++R KP++FSMARLD+VKNITGLVE + + +LR LVNLVVV
Sbjct: 378 DASRGYLENRRKPVIFSMARLDKVKNITGLVEWYGQDKRLRVLVNLVVV 524
>gb|CL154120.1|CL154120 104_339_10781170_116_31372_034 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10781170, DNA
sequence
Length = 704
Score = 91.3 bits (193), Expect(2) = 1e-033
Identities = 36/56 (64%), Positives = 42/56 (75%)
Frame = +3 / +1
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHI 170
R GI+VFDPKFNI +PGAD S+YFP T K KRLT LH IE L+Y E+NDEH+
Sbjct: 160 RFATGINVFDPKFNIAAPGADQSVYFPFTLKHKRLTDLHPQIEALVYGKEENDEHM 327
Score = 72.5 bits (152), Expect(2) = 1e-033
Identities = 31/49 (63%), Positives = 40/49 (81%)
Frame = +3 / +1
Query: 159 DEHIGHLDDRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVV 305
D G+L++R KP++FSMARLD+VKNITGLVE + + +LR LVNLVVV
Sbjct: 403 DASRGYLENRRKPVIFSMARLDKVKNITGLVEWYGQDKRLRVLVNLVVV 549
>gb|AW671000.1|AW671000 LG1_278_G10.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 501
Score = 144 bits (308), Expect = 1e-033
Identities = 61/89 (68%), Positives = 73/89 (82%)
Frame = +3 / +1
Query: 39 FNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLDDRSKPILFSMAR 218
FNIVSPGAD+SIYFP+TE KRLTSLH IE L+Y +N EH L+DR+KPI+FSMAR
Sbjct: 10 FNIVSPGADLSIYFPYTESHKRLTSLHPEIEELLYSQTENTEHKFVLNDRNKPIIFSMAR 189
Query: 219 LDRVKNITGLVEAFAKCAKLRELVNLVVV 305
LDRVKN+TGLVE + + +L+ELVNLVVV
Sbjct: 190 LDRVKNLTGLVELYGRNKRLQELVNLVVV 276
>gb|BF421850.1|BF421850 FM1_11_B10.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 598
Score = 143 bits (307), Expect = 2e-033
Identities = 59/79 (74%), Positives = 67/79 (84%)
Frame = +3 / +2
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLD 182
RVVHGIDVFDPKFNIVSPGAD+SIYFP+TE KRLTSLH IE L+Y +N EH L+
Sbjct: 362 RVVHGIDVFDPKFNIVSPGADLSIYFPYTESHKRLTSLHPEIEELLYSQTENTEHKFVLN 541
Query: 183 DRSKPILFSMARLDRVKNI 239
DR+KPI+FSMARLDRVKN+
Sbjct: 542 DRNKPIIFSMARLDRVKNL 598
>gb|CW170568.1|CW170568 104_581_11155275_116_36521_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11155275, DNA
sequence
Length = 659
Score = 90.4 bits (191), Expect(2) = 3e-033
Identities = 35/52 (67%), Positives = 41/52 (78%)
Frame = +3 / -3
Query: 15 GIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHI 170
GI+VFDPKFNI +PGAD S+YFP T K KRLT LH IE L+Y E+NDEH+
Sbjct: 651 GINVFDPKFNIAAPGADQSVYFPFTLKHKRLTDLHPQIEALVYGKEENDEHM 496
Score = 72.5 bits (152), Expect(2) = 3e-033
Identities = 31/49 (63%), Positives = 40/49 (81%)
Frame = +3 / -3
Query: 159 DEHIGHLDDRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVV 305
D G+L++R KP++FSMARLD+VKNITGLVE + + +LR LVNLVVV
Sbjct: 420 DASRGYLENRRKPVIFSMARLDKVKNITGLVEWYGQDKRLRVLVNLVVV 274
>gb|CN125652.1|CN125652 RHOH1_12_A02.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_12_A02_A002 5', mRNA sequence
Length = 843
Score = 138 bits (296), Expect = 7e-032
Identities = 59/87 (67%), Positives = 71/87 (81%)
Frame = +3 / +2
Query: 45 IVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLDDRSKPILFSMARLD 224
IVSPGAD+SIYFP+TE KRLTSLH IE L+Y +N EH L+DR+KPI+FSMARLD
Sbjct: 2 IVSPGADLSIYFPYTESHKRLTSLHPEIEELLYSQTENTEHKFVLNDRNKPIIFSMARLD 181
Query: 225 RVKNITGLVEAFAKCAKLRELVNLVVV 305
RVKN+TGLVE + + +L+ELVNLVVV
Sbjct: 182 RVKNLTGLVELYGRNKRLQELVNLVVV 262
>gb|BG053906.1|BG053906 RHIZ2_11_D11.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 619
Score = 136 bits (292), Expect = 2e-031
Identities = 57/86 (66%), Positives = 69/86 (80%)
Frame = +3 / +1
Query: 51 SPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLDDRSKPILFSMARLDRV 230
SPGADMS+Y+P+TE KRLT+ H IE LIY +NDEH L D++KPI+FSMARLDRV
Sbjct: 10 SPGADMSVYYPYTETDKRLTAFHPEIEELIYSDVENDEHKFVLKDKNKPIIFSMARLDRV 189
Query: 231 KNITGLVEAFAKCAKLRELVNLVVVA 308
KN+TGLVE + K A+LREL NLV+VA
Sbjct: 190 KNMTGLVEMYGKNARLRELANLVIVA 267
>gb|BI098852.1|BI098852 IP1_34_A09.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 285
Score = 136 bits (292), Expect = 2e-031
Identities = 57/86 (66%), Positives = 69/86 (80%)
Frame = +3 / +1
Query: 51 SPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLDDRSKPILFSMARLDRV 230
SPGADMS+Y+P+TE KRLT+ H IE LIY +NDEH L D++KPI+FSMARLDRV
Sbjct: 10 SPGADMSVYYPYTETDKRLTAFHPEIEELIYSDVENDEHKFVLKDKNKPIIFSMARLDRV 189
Query: 231 KNITGLVEAFAKCAKLRELVNLVVVA 308
KN+TGLVE + K A+LREL NLV+VA
Sbjct: 190 KNMTGLVEMYGKNARLRELANLVIVA 267
>gb|CN125903.1|CN125903 RHOH1_14_C02.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_14_C02_A002 3', mRNA sequence
Length = 761
Score = 81.7 bits (172), Expect(3) = 2e-029
Identities = 34/40 (85%), Positives = 36/40 (90%)
Frame = -2 / -1
Query: 561 KKKPX**PPTMTRDTWDTTPAGNIFPDFLKRDPITDRSAA 442
++ P *PPTMTRDT DTTPAGNIFPDFLKRDPITDRSAA
Sbjct: 449 RRIPWK*PPTMTRDTRDTTPAGNIFPDFLKRDPITDRSAA 330
Score = 80.8 bits (170), Expect(3) = 3e-026
Identities = 30/35 (85%), Positives = 32/35 (91%)
Frame = -1 / -3
Query: 544 VASDHDQGYMGHDTSWEHLPGLLEARPHHRQKRGQ 440
VASDHDQGY GHDTSWE+LPGLLEARPHH QKR +
Sbjct: 432 VASDHDQGYKGHDTSWEYLPGLLEARPHH*QKRSR 328
Score = 78.5 bits (165), Expect(3) = 1e-028
Identities = 28/31 (90%), Positives = 30/31 (96%)
Frame = +3 / +2
Query: 447 RFCR*WGRASRSPGRCSQLVSCPMYPWSWSE 539
RFC+*WGRASRSPGR SQLVSCP+YPWSWSE
Sbjct: 335 RFCQ*WGRASRSPGRYSQLVSCPLYPWSWSE 427
Score = 77.6 bits (163), Expect(3) = 2e-025
Identities = 29/32 (90%), Positives = 30/32 (93%)
Frame = +1 / +3
Query: 439 SGRASVGDGVALQEVREDVPSWCRVPCIPGHG 534
SG ASV DGVALQEVRED+PSWCRVPCIPGHG
Sbjct: 327 SGCASVSDGVALQEVREDIPSWCRVPCIPGHG 422
Score = 54.2 bits (112), Expect(3) = 1e-028
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = +1 / +1
Query: 361 SALVLYFVHTQLPKKKVFASSIGLGIS 441
SALVLYFVHTQLP + VFASSIGLGI+
Sbjct: 250 SALVLYFVHTQLPVRPVFASSIGLGIA 330
Score = 52.8 bits (109), Expect(3) = 2e-029
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = -3 / -1
Query: 437 IPKPIDDAKTFFFGS*VWTKYRTRAE 360
IPKPIDDAKT GS*VWTKYRTRA+
Sbjct: 326 IPKPIDDAKTGRTGS*VWTKYRTRAD 249
Score = 46.4 bits (95), Expect(3) = 2e-025
Identities = 18/26 (69%), Positives = 20/26 (76%)
Frame = +3 / +3
Query: 360 LSPGPVLRPHSTPKKKSLCIVDWFRY 437
+SPG VLRP+STP LCIVD FRY
Sbjct: 249 ISPGSVLRPYSTPSATCLCIVDRFRY 326
Score = 44.6 bits (91), Expect(3) = 3e-026
Identities = 19/26 (73%), Positives = 21/26 (80%)
Frame = -1 / -2
Query: 439 IYLNQSTMQRLFFLGVECGRSTGPGL 362
+YLN+STMQR LGVE GRST PGL
Sbjct: 328 LYLNRSTMQRQVALGVEYGRSTEPGL 251
Score = 33.6 bits (67), Expect(3) = 2e-029
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -3 / -1
Query: 365 AEDFWLPLFIYP 330
A+DFWLPLFIYP
Sbjct: 236 AKDFWLPLFIYP 201
Score = 32.2 bits (64), Expect(3) = 1e-028
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +3 / +3
Query: 327 SGIYEEWKPEIL 362
+GIYEEWKPEIL
Sbjct: 198 NGIYEEWKPEIL 233
Score = 31.8 bits (63), Expect(3) = 3e-026
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = -1 / -2
Query: 361 RISGFHSSYIPL 326
RISGFHSSYIPL
Sbjct: 232 RISGFHSSYIPL 197
Score = 29.9 bits (59), Expect(3) = 2e-025
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +2 / +2
Query: 326 *WDI*RVEARNP 361
*WDI*RVEARNP
Sbjct: 197 *WDI*RVEARNP 232
>gb|CN132591.1|CN132591 OX1_7_C07.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_7_C07_A002 3', mRNA sequence
Length = 703
Score = 81.7 bits (172), Expect(3) = 2e-029
Identities = 34/40 (85%), Positives = 36/40 (90%)
Frame = -2 / -1
Query: 561 KKKPX**PPTMTRDTWDTTPAGNIFPDFLKRDPITDRSAA 442
++ P *PPTMTRDT DTTPAGNIFPDFLKRDPITDRSAA
Sbjct: 424 RRIPWK*PPTMTRDTRDTTPAGNIFPDFLKRDPITDRSAA 305
Score = 80.8 bits (170), Expect(3) = 3e-026
Identities = 30/35 (85%), Positives = 32/35 (91%)
Frame = -1 / -3
Query: 544 VASDHDQGYMGHDTSWEHLPGLLEARPHHRQKRGQ 440
VASDHDQGY GHDTSWE+LPGLLEARPHH QKR +
Sbjct: 407 VASDHDQGYKGHDTSWEYLPGLLEARPHH*QKRSR 303
Score = 78.5 bits (165), Expect(3) = 1e-028
Identities = 28/31 (90%), Positives = 30/31 (96%)
Frame = +3 / +1
Query: 447 RFCR*WGRASRSPGRCSQLVSCPMYPWSWSE 539
RFC+*WGRASRSPGR SQLVSCP+YPWSWSE
Sbjct: 310 RFCQ*WGRASRSPGRYSQLVSCPLYPWSWSE 402
Score = 77.6 bits (163), Expect(3) = 2e-025
Identities = 29/32 (90%), Positives = 30/32 (93%)
Frame = +1 / +2
Query: 439 SGRASVGDGVALQEVREDVPSWCRVPCIPGHG 534
SG ASV DGVALQEVRED+PSWCRVPCIPGHG
Sbjct: 302 SGCASVSDGVALQEVREDIPSWCRVPCIPGHG 397
Score = 54.2 bits (112), Expect(3) = 1e-028
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = +1 / +3
Query: 361 SALVLYFVHTQLPKKKVFASSIGLGIS 441
SALVLYFVHTQLP + VFASSIGLGI+
Sbjct: 225 SALVLYFVHTQLPVRPVFASSIGLGIA 305
Score = 52.8 bits (109), Expect(3) = 2e-029
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = -3 / -1
Query: 437 IPKPIDDAKTFFFGS*VWTKYRTRAE 360
IPKPIDDAKT GS*VWTKYRTRA+
Sbjct: 301 IPKPIDDAKTGRTGS*VWTKYRTRAD 224
Score = 46.4 bits (95), Expect(3) = 2e-025
Identities = 18/26 (69%), Positives = 20/26 (76%)
Frame = +3 / +2
Query: 360 LSPGPVLRPHSTPKKKSLCIVDWFRY 437
+SPG VLRP+STP LCIVD FRY
Sbjct: 224 ISPGSVLRPYSTPSATCLCIVDRFRY 301
Score = 44.6 bits (91), Expect(3) = 3e-026
Identities = 19/26 (73%), Positives = 21/26 (80%)
Frame = -1 / -2
Query: 439 IYLNQSTMQRLFFLGVECGRSTGPGL 362
+YLN+STMQR LGVE GRST PGL
Sbjct: 303 LYLNRSTMQRQVALGVEYGRSTEPGL 226
Score = 33.6 bits (67), Expect(3) = 2e-029
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -3 / -1
Query: 365 AEDFWLPLFIYP 330
A+DFWLPLFIYP
Sbjct: 211 AKDFWLPLFIYP 176
Score = 32.2 bits (64), Expect(3) = 1e-028
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +3 / +2
Query: 327 SGIYEEWKPEIL 362
+GIYEEWKPEIL
Sbjct: 173 NGIYEEWKPEIL 208
Score = 31.8 bits (63), Expect(3) = 3e-026
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = -1 / -2
Query: 361 RISGFHSSYIPL 326
RISGFHSSYIPL
Sbjct: 207 RISGFHSSYIPL 172
Score = 29.9 bits (59), Expect(3) = 2e-025
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +2 / +1
Query: 326 *WDI*RVEARNP 361
*WDI*RVEARNP
Sbjct: 172 *WDI*RVEARNP 207
>gb|BG239828.1|BG239828 OV1_29_E09.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 592
Score = 81.7 bits (172), Expect(3) = 2e-029
Identities = 34/40 (85%), Positives = 36/40 (90%)
Frame = -2 / -3
Query: 561 KKKPX**PPTMTRDTWDTTPAGNIFPDFLKRDPITDRSAA 442
++ P *PPTMTRDT DTTPAGNIFPDFLKRDPITDRSAA
Sbjct: 371 RRIPWK*PPTMTRDTRDTTPAGNIFPDFLKRDPITDRSAA 252
Score = 80.8 bits (170), Expect(3) = 3e-026
Identities = 30/35 (85%), Positives = 32/35 (91%)
Frame = -1 / -2
Query: 544 VASDHDQGYMGHDTSWEHLPGLLEARPHHRQKRGQ 440
VASDHDQGY GHDTSWE+LPGLLEARPHH QKR +
Sbjct: 354 VASDHDQGYKGHDTSWEYLPGLLEARPHH*QKRSR 250
Score = 78.5 bits (165), Expect(3) = 1e-028
Identities = 28/31 (90%), Positives = 30/31 (96%)
Frame = +3 / +2
Query: 447 RFCR*WGRASRSPGRCSQLVSCPMYPWSWSE 539
RFC+*WGRASRSPGR SQLVSCP+YPWSWSE
Sbjct: 257 RFCQ*WGRASRSPGRYSQLVSCPLYPWSWSE 349
Score = 77.6 bits (163), Expect(3) = 2e-025
Identities = 29/32 (90%), Positives = 30/32 (93%)
Frame = +1 / +3
Query: 439 SGRASVGDGVALQEVREDVPSWCRVPCIPGHG 534
SG ASV DGVALQEVRED+PSWCRVPCIPGHG
Sbjct: 249 SGCASVSDGVALQEVREDIPSWCRVPCIPGHG 344
Score = 54.2 bits (112), Expect(3) = 1e-028
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = +1 / +1
Query: 361 SALVLYFVHTQLPKKKVFASSIGLGIS 441
SALVLYFVHTQLP + VFASSIGLGI+
Sbjct: 172 SALVLYFVHTQLPVRPVFASSIGLGIA 252
Score = 52.8 bits (109), Expect(3) = 2e-029
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = -3 / -3
Query: 437 IPKPIDDAKTFFFGS*VWTKYRTRAE 360
IPKPIDDAKT GS*VWTKYRTRA+
Sbjct: 248 IPKPIDDAKTGRTGS*VWTKYRTRAD 171
Score = 46.4 bits (95), Expect(3) = 2e-025
Identities = 18/26 (69%), Positives = 20/26 (76%)
Frame = +3 / +3
Query: 360 LSPGPVLRPHSTPKKKSLCIVDWFRY 437
+SPG VLRP+STP LCIVD FRY
Sbjct: 171 ISPGSVLRPYSTPSATCLCIVDRFRY 248
Score = 44.6 bits (91), Expect(3) = 3e-026
Identities = 19/26 (73%), Positives = 21/26 (80%)
Frame = -1 / -1
Query: 439 IYLNQSTMQRLFFLGVECGRSTGPGL 362
+YLN+STMQR LGVE GRST PGL
Sbjct: 250 LYLNRSTMQRQVALGVEYGRSTEPGL 173
Score = 33.6 bits (67), Expect(3) = 2e-029
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -3 / -3
Query: 365 AEDFWLPLFIYP 330
A+DFWLPLFIYP
Sbjct: 158 AKDFWLPLFIYP 123
Score = 32.2 bits (64), Expect(3) = 1e-028
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +3 / +3
Query: 327 SGIYEEWKPEIL 362
+GIYEEWKPEIL
Sbjct: 120 NGIYEEWKPEIL 155
Score = 31.8 bits (63), Expect(3) = 3e-026
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = -1 / -1
Query: 361 RISGFHSSYIPL 326
RISGFHSSYIPL
Sbjct: 154 RISGFHSSYIPL 119
Score = 29.9 bits (59), Expect(3) = 2e-025
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +2 / +2
Query: 326 *WDI*RVEARNP 361
*WDI*RVEARNP
Sbjct: 119 *WDI*RVEARNP 154
>gb|CN132678.1|CN132678 OX1_7_C07.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_7_C07_A002 5', mRNA sequence
Length = 672
Score = 81.7 bits (172), Expect(3) = 3e-029
Identities = 34/40 (85%), Positives = 36/40 (90%)
Frame = -2 / -3
Query: 561 KKKPX**PPTMTRDTWDTTPAGNIFPDFLKRDPITDRSAA 442
++ P *PPTMTRDT DTTPAGNIFPDFLKRDPITDRSAA
Sbjct: 652 RRIPWK*PPTMTRDTRDTTPAGNIFPDFLKRDPITDRSAA 533
Score = 80.8 bits (170), Expect(3) = 3e-026
Identities = 30/35 (85%), Positives = 32/35 (91%)
Frame = -1 / -2
Query: 544 VASDHDQGYMGHDTSWEHLPGLLEARPHHRQKRGQ 440
VASDHDQGY GHDTSWE+LPGLLEARPHH QKR +
Sbjct: 635 VASDHDQGYKGHDTSWEYLPGLLEARPHH*QKRSR 531
Score = 78.5 bits (165), Expect(3) = 5e-028
Identities = 28/31 (90%), Positives = 30/31 (96%)
Frame = +3 / +1
Query: 447 RFCR*WGRASRSPGRCSQLVSCPMYPWSWSE 539
RFC+*WGRASRSPGR SQLVSCP+YPWSWSE
Sbjct: 538 RFCQ*WGRASRSPGRYSQLVSCPLYPWSWSE 630
Score = 77.6 bits (163), Expect(3) = 2e-025
Identities = 29/32 (90%), Positives = 30/32 (93%)
Frame = +1 / +2
Query: 439 SGRASVGDGVALQEVREDVPSWCRVPCIPGHG 534
SG ASV DGVALQEVRED+PSWCRVPCIPGHG
Sbjct: 530 SGCASVSDGVALQEVREDIPSWCRVPCIPGHG 625
Score = 52.4 bits (108), Expect(3) = 5e-028
Identities = 22/26 (84%), Positives = 24/26 (92%)
Frame = +1 / +3
Query: 364 ALVLYFVHTQLPKKKVFASSIGLGIS 441
ALVLYFVHTQLP + VFASSIGLGI+
Sbjct: 456 ALVLYFVHTQLPVRPVFASSIGLGIA 533
Score = 51.9 bits (107), Expect(3) = 3e-029
Identities = 22/25 (88%), Positives = 22/25 (88%)
Frame = -3 / -3
Query: 437 IPKPIDDAKTFFFGS*VWTKYRTRA 363
IPKPIDDAKT GS*VWTKYRTRA
Sbjct: 529 IPKPIDDAKTGRTGS*VWTKYRTRA 455
Score = 46.4 bits (95), Expect(3) = 2e-025
Identities = 18/26 (69%), Positives = 20/26 (76%)
Frame = +3 / +2
Query: 360 LSPGPVLRPHSTPKKKSLCIVDWFRY 437
+SPG VLRP+STP LCIVD FRY
Sbjct: 452 MSPGSVLRPYSTPSATCLCIVDRFRY 529
Score = 44.6 bits (91), Expect(3) = 3e-026
Identities = 19/26 (73%), Positives = 21/26 (80%)
Frame = -1 / -1
Query: 439 IYLNQSTMQRLFFLGVECGRSTGPGL 362
+YLN+STMQR LGVE GRST PGL
Sbjct: 531 LYLNRSTMQRQVALGVEYGRSTEPGL 454
Score = 33.6 bits (67), Expect(3) = 3e-029
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -3 / -3
Query: 365 AEDFWLPLFIYP 330
A+DFWLPLFIYP
Sbjct: 439 AKDFWLPLFIYP 404
Score = 32.2 bits (64), Expect(3) = 5e-028
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +3 / +2
Query: 327 SGIYEEWKPEIL 362
+GIYEEWKPEIL
Sbjct: 401 NGIYEEWKPEIL 436
Score = 31.8 bits (63), Expect(3) = 3e-026
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = -1 / -1
Query: 361 RISGFHSSYIPL 326
RISGFHSSYIPL
Sbjct: 435 RISGFHSSYIPL 400
Score = 29.9 bits (59), Expect(3) = 2e-025
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +2 / +1
Query: 326 *WDI*RVEARNP 361
*WDI*RVEARNP
Sbjct: 400 *WDI*RVEARNP 435
>gb|CF759443.1|CF759443 DSAF1_45_D03.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_45_D03_A011 5', mRNA sequence
Length = 557
Score = 81.7 bits (172), Expect(3) = 6e-029
Identities = 34/40 (85%), Positives = 36/40 (90%)
Frame = -2 / -1
Query: 561 KKKPX**PPTMTRDTWDTTPAGNIFPDFLKRDPITDRSAA 442
++ P *PPTMTRDT DTTPAGNIFPDFLKRDPITDRSAA
Sbjct: 455 RRIPWK*PPTMTRDTRDTTPAGNIFPDFLKRDPITDRSAA 336
Score = 80.8 bits (170), Expect(3) = 1e-025
Identities = 30/35 (85%), Positives = 32/35 (91%)
Frame = -1 / -3
Query: 544 VASDHDQGYMGHDTSWEHLPGLLEARPHHRQKRGQ 440
VASDHDQGY GHDTSWE+LPGLLEARPHH QKR +
Sbjct: 438 VASDHDQGYKGHDTSWEYLPGLLEARPHH*QKRSR 334
Score = 78.5 bits (165), Expect(3) = 5e-028
Identities = 28/31 (90%), Positives = 30/31 (96%)
Frame = +3 / +2
Query: 447 RFCR*WGRASRSPGRCSQLVSCPMYPWSWSE 539
RFC+*WGRASRSPGR SQLVSCP+YPWSWSE
Sbjct: 341 RFCQ*WGRASRSPGRYSQLVSCPLYPWSWSE 433
Score = 77.6 bits (163), Expect(3) = 8e-025
Identities = 29/32 (90%), Positives = 30/32 (93%)
Frame = +1 / +3
Query: 439 SGRASVGDGVALQEVREDVPSWCRVPCIPGHG 534
SG ASV DGVALQEVRED+PSWCRVPCIPGHG
Sbjct: 333 SGCASVSDGVALQEVREDIPSWCRVPCIPGHG 428
Score = 52.4 bits (108), Expect(3) = 5e-028
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = +1 / +1
Query: 361 SALVLYFVHTQLPKKKVFASSIGLGIS 441
S LVLYFVHTQLP + VFASSIGLGI+
Sbjct: 256 SXLVLYFVHTQLPVRPVFASSIGLGIA 336
Score = 51.0 bits (105), Expect(3) = 6e-029
Identities = 21/26 (80%), Positives = 22/26 (84%)
Frame = -3 / -1
Query: 437 IPKPIDDAKTFFFGS*VWTKYRTRAE 360
IPKPIDDAKT GS*VWTKYRTR +
Sbjct: 332 IPKPIDDAKTGRTGS*VWTKYRTRXD 255
Score = 44.6 bits (91), Expect(3) = 8e-025
Identities = 17/26 (65%), Positives = 19/26 (73%)
Frame = +3 / +3
Query: 360 LSPGPVLRPHSTPKKKSLCIVDWFRY 437
+ PG VLRP+STP LCIVD FRY
Sbjct: 255 IXPGSVLRPYSTPSATCLCIVDRFRY 332
Score = 42.8 bits (87), Expect(3) = 1e-025
Identities = 18/25 (72%), Positives = 20/25 (80%)
Frame = -1 / -2
Query: 439 IYLNQSTMQRLFFLGVECGRSTGPG 365
+YLN+STMQR LGVE GRST PG
Sbjct: 334 LYLNRSTMQRQVALGVEYGRSTEPG 260
Score = 33.6 bits (67), Expect(3) = 6e-029
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -3 / -1
Query: 365 AEDFWLPLFIYP 330
A+DFWLPLFIYP
Sbjct: 242 AKDFWLPLFIYP 207
Score = 32.2 bits (64), Expect(3) = 5e-028
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +3 / +3
Query: 327 SGIYEEWKPEIL 362
+GIYEEWKPEIL
Sbjct: 204 NGIYEEWKPEIL 239
Score = 31.8 bits (63), Expect(3) = 1e-025
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = -1 / -2
Query: 361 RISGFHSSYIPL 326
RISGFHSSYIPL
Sbjct: 238 RISGFHSSYIPL 203
Score = 29.9 bits (59), Expect(3) = 8e-025
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +2 / +2
Query: 326 *WDI*RVEARNP 361
*WDI*RVEARNP
Sbjct: 203 *WDI*RVEARNP 238
>gb|CD430680.1|CD430680 ETH1_20_G04.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_20_G04_A002 3', mRNA sequence
Length = 616
Score = 81.7 bits (172), Expect(3) = 1e-028
Identities = 34/40 (85%), Positives = 36/40 (90%)
Frame = -2 / -3
Query: 561 KKKPX**PPTMTRDTWDTTPAGNIFPDFLKRDPITDRSAA 442
++ P *PPTMTRDT DTTPAGNIFPDFLKRDPITDRSAA
Sbjct: 263 RRIPWK*PPTMTRDTRDTTPAGNIFPDFLKRDPITDRSAA 144
Score = 80.8 bits (170), Expect(3) = 2e-025
Identities = 30/35 (85%), Positives = 32/35 (91%)
Frame = -1 / -2
Query: 544 VASDHDQGYMGHDTSWEHLPGLLEARPHHRQKRGQ 440
VASDHDQGY GHDTSWE+LPGLLEARPHH QKR +
Sbjct: 246 VASDHDQGYKGHDTSWEYLPGLLEARPHH*QKRSR 142
Score = 78.5 bits (165), Expect(3) = 1e-027
Identities = 28/31 (90%), Positives = 30/31 (96%)
Frame = +3 / +2
Query: 447 RFCR*WGRASRSPGRCSQLVSCPMYPWSWSE 539
RFC+*WGRASRSPGR SQLVSCP+YPWSWSE
Sbjct: 149 RFCQ*WGRASRSPGRYSQLVSCPLYPWSWSE 241
Score = 77.6 bits (163), Expect(3) = 2e-025
Identities = 29/32 (90%), Positives = 30/32 (93%)
Frame = +1 / +3
Query: 439 SGRASVGDGVALQEVREDVPSWCRVPCIPGHG 534
SG ASV DGVALQEVRED+PSWCRVPCIPGHG
Sbjct: 141 SGCASVSDGVALQEVREDIPSWCRVPCIPGHG 236
Score = 51.0 bits (105), Expect(3) = 1e-027
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = +1 / +1
Query: 361 SALVLYFVHTQLPKKKVFASSIGLGIS 441
SALVLYFVHTQLP + V ASSIGLGI+
Sbjct: 64 SALVLYFVHTQLPVRPVXASSIGLGIA 144
Score = 50.1 bits (103), Expect(3) = 1e-028
Identities = 21/26 (80%), Positives = 22/26 (84%)
Frame = -3 / -3
Query: 437 IPKPIDDAKTFFFGS*VWTKYRTRAE 360
IPKPIDDA T GS*VWTKYRTRA+
Sbjct: 140 IPKPIDDAXTGRTGS*VWTKYRTRAD 63
Score = 46.4 bits (95), Expect(3) = 2e-025
Identities = 18/26 (69%), Positives = 20/26 (76%)
Frame = +3 / +3
Query: 360 LSPGPVLRPHSTPKKKSLCIVDWFRY 437
+SPG VLRP+STP LCIVD FRY
Sbjct: 63 ISPGSVLRPYSTPSATCLCIVDRFRY 140
Score = 41.8 bits (85), Expect(3) = 2e-025
Identities = 18/26 (69%), Positives = 20/26 (76%)
Frame = -1 / -1
Query: 439 IYLNQSTMQRLFFLGVECGRSTGPGL 362
+YLN+STM R LGVE GRST PGL
Sbjct: 142 LYLNRSTMXRQVALGVEYGRSTEPGL 65
Score = 33.6 bits (67), Expect(3) = 1e-028
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -3 / -3
Query: 365 AEDFWLPLFIYP 330
A+DFWLPLFIYP
Sbjct: 50 AKDFWLPLFIYP 15
Score = 32.2 bits (64), Expect(3) = 1e-027
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +3 / +3
Query: 327 SGIYEEWKPEIL 362
+GIYEEWKPEIL
Sbjct: 12 NGIYEEWKPEIL 47
Score = 31.8 bits (63), Expect(3) = 2e-025
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = -1 / -1
Query: 361 RISGFHSSYIPL 326
RISGFHSSYIPL
Sbjct: 46 RISGFHSSYIPL 11
Score = 29.9 bits (59), Expect(3) = 2e-025
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +2 / +2
Query: 326 *WDI*RVEARNP 361
*WDI*RVEARNP
Sbjct: 11 *WDI*RVEARNP 46
>gb|BQ656079.1|BQ656079 pRC1044 Sorghum halepense rhizome cDNA library Sorghum halepense
cDNA clone pRC1044, mRNA sequence
Length = 474
Score = 79.4 bits (167), Expect(2) = 4e-025
Identities = 33/40 (82%), Positives = 36/40 (90%)
Frame = -2 / -2
Query: 561 KKKPX**PPTMTRDTWDTTPAGNIFPDFLKRDPITDRSAA 442
+K P *PPT+TRDT +TTPAGNIFPDFLKRDPITDRSAA
Sbjct: 236 RKIPWK*PPTITRDTRETTPAGNIFPDFLKRDPITDRSAA 117
Score = 71.2 bits (149), Expect(2) = 9e-023
Identities = 25/32 (78%), Positives = 29/32 (90%)
Frame = +1 / +3
Query: 439 SGRASVGDGVALQEVREDVPSWCRVPCIPGHG 534
SG ASV DG+ LQEVRED+PSWCR+PCIPG+G
Sbjct: 114 SGCASVSDGITLQEVREDIPSWCRLPCIPGYG 209
Score = 69.3 bits (145), Expect(2) = 1e-021
Identities = 30/37 (81%), Positives = 32/37 (86%)
Frame = +2 / +1
Query: 455 SVMGSRFKKSGKMFPAGVVSHVSLVMVGGYYXGFFFS 565
SVMGSRFKKSGK+FPAGVVS VSLVMVGGY+ G S
Sbjct: 130 SVMGSRFKKSGKIFPAGVVSLVSLVMVGGYFHGILRS 240
Score = 66.6 bits (139), Expect(2) = 1e-020
Identities = 26/35 (74%), Positives = 29/35 (82%)
Frame = -1 / -1
Query: 544 VASDHDQGYMGHDTSWEHLPGLLEARPHHRQKRGQ 440
VASDH+QGY G DTSWE+LPGLLEA HH QKR +
Sbjct: 219 VASDHNQGYKGDDTSWEYLPGLLEA*SHH*QKRSR 115
Score = 56.5 bits (117), Expect(2) = 9e-023
Identities = 20/26 (76%), Positives = 22/26 (84%)
Frame = +3 / +3
Query: 360 LSPGPVLRPHSTPKKKSLCIVDWFRY 437
+SPGPVL PHSTP + LCIVDWFRY
Sbjct: 36 ISPGPVLCPHSTPSETCLCIVDWFRY 113
Score = 56.1 bits (116), Expect(2) = 4e-025
Identities = 23/28 (82%), Positives = 25/28 (89%)
Frame = -2 / -1
Query: 444 ARYT*TNRRCKDFFFWELSVDEVQDQG* 361
+RYT*TNRRCKD WELSVD+VQDQG*
Sbjct: 120 SRYT*TNRRCKDRSHWELSVDKVQDQG* 37
Score = 54.2 bits (112), Expect(2) = 1e-020
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = -3 / -2
Query: 437 IPKPIDDAKTFFFGS*VWTKYRTRAE 360
IPKPIDDAKT GS*VWTKYRTRA+
Sbjct: 113 IPKPIDDAKTGLTGS*VWTKYRTRAD 36
Score = 54.2 bits (112), Expect(2) = 1e-021
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = +1 / +1
Query: 361 SALVLYFVHTQLPKKKVFASSIGLGIS 441
SALVLYFVHTQLP + VFASSIGLGI+
Sbjct: 37 SALVLYFVHTQLPVRPVFASSIGLGIA 117
>gb|BE367438.1|BE367438 PI1_8_D02.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 426
Score = 105 bits (224), Expect = 6e-022
Identities = 46/72 (63%), Positives = 56/72 (77%)
Frame = +3 / +2
Query: 90 EKAKRLTSLHGSIENLIYDPEQNDEHIGHLDDRSKPILFSMARLDRVKNITGLVEAFAKC 269
E KRLTSLH IE L+Y +N EH L+DR+KPI+FSMARLDRVKN+TGLVE + +
Sbjct: 11 ESHKRLTSLHPEIEELLYSQTENTEHKFVLNDRNKPIIFSMARLDRVKNLTGLVELYGRN 190
Query: 270 AKLRELVNLVVV 305
+L+ELVNLVVV
Sbjct: 191 KRLQELVNLVVV 226
>gb|BI246111.1|BI246111 IP1_67_A03.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 448
Score = 105 bits (224), Expect = 6e-022
Identities = 41/55 (74%), Positives = 46/55 (83%)
Frame = +3 / +3
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEH 167
RVVHGIDVFDPKFNIVSPGADMS+Y+P+TE KRLT+ H IE LIY +NDEH
Sbjct: 273 RVVHGIDVFDPKFNIVSPGADMSVYYPYTETDKRLTAFHPEIEELIYSDVENDEH 437
>gb|BG355607.2|BG355607 EM1_19_H10.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 571
Score = 105 bits (224), Expect = 6e-022
Identities = 41/55 (74%), Positives = 46/55 (83%)
Frame = +3 / +2
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEH 167
RVVHGIDVFDPKFNIVSPGADMS+Y+P+TE KRLT+ H IE LIY +NDEH
Sbjct: 392 RVVHGIDVFDPKFNIVSPGADMSVYYPYTETDKRLTAFHPEIEELIYSDVENDEH 556
>gb|CL172141.1|CL172141 104_374_10889941_116_31775_229 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10889941, DNA
sequence
Length = 738
Score = 104 bits (222), Expect = 1e-021
Identities = 45/46 (97%), Positives = 45/46 (97%)
Frame = +3 / +1
Query: 171 GHLDDRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVVA 308
GHLDDRSKPILFSMARLDRVKNITGLVEAFAKC KLRELVNLVVVA
Sbjct: 82 GHLDDRSKPILFSMARLDRVKNITGLVEAFAKCTKLRELVNLVVVA 219
>gb|BF586164.1|BF586164 FM1_26_E04.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 549
Score = 104 bits (221), Expect = 1e-021
Identities = 45/69 (65%), Positives = 55/69 (79%)
Frame = +3 / +1
Query: 99 KRLTSLHGSIENLIYDPEQNDEHIGHLDDRSKPILFSMARLDRVKNITGLVEAFAKCAKL 278
KRLTSLH IE L+Y +N EH L+DR+KPI+FSMARLDRVKN+TGLVE + + +L
Sbjct: 16 KRLTSLHPEIEELLYSQTENTEHKFVLNDRNKPIIFSMARLDRVKNLTGLVELYGRNKRL 195
Query: 279 RELVNLVVV 305
+ELVNLVVV
Sbjct: 196 QELVNLVVV 222
>gb|CW025345.1|CW025345 104_226_10488139_116_30526 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10488139, DNA
sequence
Length = 468
Score = 103 bits (220), Expect = 2e-021
Identities = 41/55 (74%), Positives = 45/55 (81%)
Frame = +3 / -1
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEH 167
RVVHGIDVFDPKFNIVSPGAD+SIYFP+ E KRLTSLH IE L+Y +N EH
Sbjct: 189 RVVHGIDVFDPKFNIVSPGADLSIYFPYNESHKRLTSLHPEIEELLYSQTENTEH 25
>gb|BG487757.1|BG487757 FM1_73_H05.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 571
Score = 102 bits (217), Expect = 5e-021
Identities = 44/69 (63%), Positives = 55/69 (79%)
Frame = +3 / +2
Query: 99 KRLTSLHGSIENLIYDPEQNDEHIGHLDDRSKPILFSMARLDRVKNITGLVEAFAKCAKL 278
+RLTSLH IE L+Y +N EH L+DR+KPI+FSMARLDRVKN+TGLVE + + +L
Sbjct: 8 ERLTSLHPEIEELLYSQTENTEHKFVLNDRNKPIIFSMARLDRVKNLTGLVELYGRNKRL 187
Query: 279 RELVNLVVV 305
+ELVNLVVV
Sbjct: 188 QELVNLVVV 214
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 773,489,511
Number of Sequences: 832831
Number of extensions: 11387711
Number of successful extensions: 123033
Number of sequences better than 1.0e-020: 41
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 16989804846
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)