TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3191506.2.1
(1208 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW465475.1|CW465475 fsbb001f216e06k0 Sorghum methylation... 273 e-110
gb|CW512335.1|CW512335 115_1_10510445_1_30023 Sorghum unfil... 273 e-106
gb|CL179386.1|CL179386 104_388_10895272_148_31909_184 Sorgh... 296 e-102
gb|CF480456.1|CF480456 POL1_65_H05.g1_A002 Pollen Sorghum b... 353 9e-097
gb|CW423526.1|CW423526 fsbb001f133g04k0 Sorghum methylation... 171 8e-093
gb|BI141600.1|BI141600 IP1_54_E05.b1_A002 Immature pannicle... 308 1e-082
gb|BM325126.1|BM325126 PIC1_40_E09.b1_A002 Pathogen-infecte... 275 1e-072
gb|CW465474.1|CW465474 fsbb001f216e06f0 Sorghum methylation... 236 2e-070
gb|CW031244.1|CW031244 104_259_10500694_114_30397 Sorghum m... 143 1e-066
gb|BZ695088.1|BZ695088 SP__Ba0057N21.r SP__Ba Sorghum propi... 150 5e-063
gb|CW789437.1|CW789437 SP__Ba0057N21.r SP__Ba Sorghum propi... 150 5e-063
gb|CL179385.1|CL179385 104_388_10895272_116_31910_184 Sorgh... 111 3e-055
gb|BG357146.1|BG357146 OV2_10_D07.b1_A002 Ovary 2 (OV2) Sor... 143 1e-050
gb|CW170084.1|CW170084 104_580_11155017_116_36509_041 Sorgh... 117 4e-048
gb|BG102336.1|BG102336 RHIZ2_22_E09.b1_A003 Rhizome2 (RHIZ2... 183 1e-045
gb|CW068742.1|CW068742 104_317_10525284_1_30096 Sorghum met... 133 2e-041
gb|AC169370.3| Sorghum bicolor clone SB_BBc0011I20, WORKING... 100 3e-041
gb|CW481038.1|CW481038 fsbb001f240g12k0 Sorghum methylation... 100 1e-039
gb|CW198021.1|CW198021 104_622_11181988_148_36827_006 Sorgh... 138 2e-037
gb|CW388065.1|CW388065 fsbb001f072k16k0 Sorghum methylation... 105 7e-036
gb|CN140420.1|CN140420 OX1_36_B10.b1_A002 Oxidatively-stres... 149 8e-035
gb|AW745045.1|AW745045 LG1_386_C01.b1_A002 Light Grown 1 (L... 122 1e-034
gb|BM326233.1|BM326233 PIC1_72_D10.b1_A002 Pathogen-infecte... 148 2e-034
gb|BI141606.1|BI141606 IP1_54_E11.b1_A002 Immature pannicle... 147 3e-034
gb|CW198020.1|CW198020 104_622_11181988_116_36828_006 Sorgh... 139 9e-032
gb|CW229988.1|CW229988 104_671_11207609_148_37265_071 Sorgh... 91 1e-027
gb|BI211790.1|BI211790 IP1_61_B03.b1_A002 Immature pannicle... 102 7e-027
gb|CW158441.1|CW158441 104_564_11148823_148_36396_028 Sorgh... 91 7e-027
gb|BZ628081.1|BZ628081 ih57h02.b1 WGS-SbicolorF (DH5a methy... 76 1e-025
gb|CW234103.1|CW234103 104_687_11213801_148_37382_069 Sorgh... 89 2e-025
gb|CW262247.1|CW262247 104_729_11229952_148_35204_052 Sorgh... 87 5e-022
gb|BF588088.1|BF588088 FM1_37_E11.b1_A003 Floral-Induced Me... 75 3e-021
>gb|CW465475.1|CW465475 fsbb001f216e06k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f216e06, DNA
sequence
Length = 769
Score = 273 bits (591), Expect(3) = e-110
Identities = 118/120 (98%), Positives = 119/120 (99%)
Frame = +3 / -2
Query: 354 SASDRTKAMGQVLSKARDLLYDCKEITQRLRAMLQSADEQVRSLKKQSTFLSQLAAKTIP 533
SASDR KAMGQVLSKARDLLYDCKEIT+RLRAMLQSADEQVRSLKKQSTFLSQLAAKTIP
Sbjct: 513 SASDRIKAMGQVLSKARDLLYDCKEITERLRAMLQSADEQVRSLKKQSTFLSQLAAKTIP 334
Query: 534 NGIHCLSMRLTIDYYLLSPEKRKFPNSENLENPDLYHYALFSDNVLAASVVVNSTIMNAK 713
NGIHCLSMRLTIDYYLLSPEKRKFPNSENLENPDLYHYALFSDNVLAASVVVNSTIMNAK
Sbjct: 333 NGIHCLSMRLTIDYYLLSPEKRKFPNSENLENPDLYHYALFSDNVLAASVVVNSTIMNAK 154
Score = 254 bits (549), Expect(3) = e-105
Identities = 107/123 (86%), Positives = 116/123 (94%)
Frame = -1 / +1
Query: 725 FFRLLSIHDG*VDHN*CCQNIVREKSIMVKIRIFQVLTIWELSFLWREKIIINR*AHGKT 546
++ L IHDG*VDHN*CCQNIVREKSI+VKIRIFQ+LTI ELSFLWR+K+IIN *AHGKT
Sbjct: 142 YYTNLCIHDG*VDHN*CCQNIVREKSIVVKIRIFQILTIGELSFLWRQKVIINC*AHGKT 321
Query: 545 MDAIWDCLSC*LAKEGALLLQAPDLLIC*LKHCSQTLGNFLAIVQ*IPCF**NLAHCFGS 366
MDAIWDCLSC LAK+GALLLQAPDLLIC*LKHCSQTLGNFLAI+Q*IPCF**NL+HCF S
Sbjct: 322 MDAIWDCLSCQLAKKGALLLQAPDLLIC*LKHCSQTLGNFLAIIQ*IPCF**NLSHCFYS 501
Query: 365 IRS 357
IRS
Sbjct: 502 IRS 510
Score = 239 bits (517), Expect(3) = e-100
Identities = 106/113 (93%), Positives = 109/113 (96%)
Frame = -2 / +2
Query: 715 SLAFMMVELTTTDAAKTLSEKRA*W*RSGFSRFSLFGNFLFSGERR**SIVKRMERQWMP 536
+ AFMMVELTTTDAAKTLSEKRA*W*RSGFS+FSL GNFLFSG+RR**SIVKRMERQWMP
Sbjct: 152 TFAFMMVELTTTDAAKTLSEKRA*W*RSGFSKFSLLGNFLFSGDRR**SIVKRMERQWMP 331
Query: 535 FGIVLAASWLRKVLCFFKLRTCSSAD*SIALKRWVISLQSYNRSLAFDKTWPI 377
FGIVLAASWLRKVLCFFKLRTCSSAD*SIALKR VISLQSYNRSLAFDKT PI
Sbjct: 332 FGIVLAASWLRKVLCFFKLRTCSSAD*SIALKRSVISLQSYNRSLAFDKTCPI 490
Score = 134 bits (287), Expect(4) = 1e-082
Identities = 58/65 (89%), Positives = 59/65 (90%)
Frame = +1 / -3
Query: 520 LRQSQMASIVFPCA*RLIIIFSLQRKESSQIVRTWKILIFTIMLFSRTMFWQHQLWSTQP 699
LRQSQMASIVFPCA*+LII F LQRKESS IVR WKILIFT MLFSRTMFWQHQLWSTQP
Sbjct: 347 LRQSQMASIVFPCA*QLIITFCLQRKESSPIVRIWKILIFTTMLFSRTMFWQHQLWSTQP 168
Query: 700 S*MLR 714
S*M R
Sbjct: 167 S*MQR 153
Score = 133 bits (285), Expect(3) = 2e-046
Identities = 55/68 (80%), Positives = 57/68 (83%)
Frame = +2 / -2
Query: 188 RFKGPFDARSNDHGQNIFCSCQIEGQA*SLSGAACKAQGKPAIPWGSYC*C*TSQECFG* 367
RFKG DARSNDHGQNIFCSCQIEGQA*SLSGAACKAQGKPA+PWGSYC*C TSQE
Sbjct: 768 RFKGSSDARSNDHGQNIFCSCQIEGQA*SLSGAACKAQGKPALPWGSYC*CRTSQEVVPT 589
Query: 368 NQSNGPSF 391
GP+F
Sbjct: 588 RTIFGPNF 565
Score = 128 bits (275), Expect(3) = e-105
Identities = 52/56 (92%), Positives = 54/56 (96%)
Frame = -3 / +2
Query: 354 SWEVQHQQ*LPQGIAGFP*ALQAAPDRDQACPSIWQEQNIFWP*SFDLASNGPLNL 187
SWEV+HQQ*LPQG AGFP*ALQAAPDRDQACPSIWQEQNIFWP*SFDLAS+ PLNL
Sbjct: 602 SWEVRHQQ*LPQGSAGFP*ALQAAPDRDQACPSIWQEQNIFWP*SFDLASDEPLNL 769
Score = 127 bits (273), Expect(4) = 2e-049
Identities = 50/57 (87%), Positives = 51/57 (89%)
Frame = -3 / +3
Query: 714 P*HS*WLS*PQLMLPKHCPRKEHNGKDQDFPGSHYLGTFFSLEREDNNQSLSAWKDN 544
P HS*WLS*PQLMLPKHCPRKEH+GKDQDFP SHY GTFFSLE E NNQ LSAWKDN
Sbjct: 153 PLHS*WLS*PQLMLPKHCPRKEHSGKDQDFPNSHYWGTFFSLETEGNNQLLSAWKDN 323
Score = 127 bits (271), Expect(3) = e-100
Identities = 52/55 (94%), Positives = 54/55 (98%)
Frame = -1 / +3
Query: 353 LGKFSISSSFPKGSLAFLEPCKQLLIEIKLVPRFGKNRIYSGHDHLISHQTDP*I 189
LGKF ISSSFPKG+LAFLEPCKQLLIEIKLVPRFGKNRIYSGHDHLISHQT+P*I
Sbjct: 603 LGKFGISSSFPKGALAFLEPCKQLLIEIKLVPRFGKNRIYSGHDHLISHQTNP*I 767
Score = 123 bits (263), Expect(3) = e-110
Identities = 55/55 (100%), Positives = 55/55 (100%)
Frame = +3 / -3
Query: 189 DSRVRLMRDQMIMARIYSVLAKSRDKLDLYQELLARLKESQRSLGEATADAELPK 353
DSRVRLMRDQMIMARIYSVLAKSRDKLDLYQELLARLKESQRSLGEATADAELPK
Sbjct: 767 DSRVRLMRDQMIMARIYSVLAKSRDKLDLYQELLARLKESQRSLGEATADAELPK 603
Score = 122 bits (261), Expect(4) = 1e-082
Identities = 53/56 (94%), Positives = 53/56 (94%)
Frame = +1 / -1
Query: 187 QIQGSV*CEIK*SWPEYILFLPNRGTSLISIRSCLQGSRKASDPLGKLLLMLNFPR 354
QIQG V*CEIK*SWPEYILFLPNRGTSLISIRSCLQGSRKAS PLGKLLLM NFPR
Sbjct: 769 QIQGFV*CEIK*SWPEYILFLPNRGTSLISIRSCLQGSRKASAPLGKLLLMPNFPR 602
Score = 121 bits (259), Expect = 2e-026
Identities = 57/78 (73%), Positives = 60/78 (76%)
Frame = +2 / -1
Query: 359 FG*NQSNGPSFIKSKGSIVRLQGNYPAFESNASVSR*AGXXXXXXXXXXXXXSS*DNPKW 538
FG*N+SNG SFIKSKGSIV LQGNY AFESNASVSR*AG S*DNPKW
Sbjct: 508 FG*NKSNGTSFIKSKGSIV*LQGNYRAFESNASVSR*AGPELEEAEHLS*PAGS*DNPKW 329
Query: 539 HPLSFHALND*LLSSLSR 592
HPLSFHALN+*LL S+SR
Sbjct: 328 HPLSFHALNN*LLPSVSR 275
Score = 73.5 bits (154), Expect(4) = 1e-082
Identities = 30/33 (90%), Positives = 30/33 (90%)
Frame = +1 / -3
Query: 358 LRIEPKQWAKFYQKQGIYCTIARKLPSV*EQCF 456
LRIE KQW KFYQKQGIYC IARKLPSV*EQCF
Sbjct: 509 LRIE*KQWDKFYQKQGIYCMIARKLPSV*EQCF 411
Score = 73.0 bits (153), Expect(3) = 2e-046
Identities = 28/29 (96%), Positives = 28/29 (96%)
Frame = +2 / -1
Query: 629 S*SLPLCSFLGQCFGSISCGQLNHHEC*G 715
S*SLPLCSFLGQCFGSISCGQLNHHEC G
Sbjct: 238 S*SLPLCSFLGQCFGSISCGQLNHHECKG 152
Score = 54.7 bits (113), Expect(4) = 2e-049
Identities = 25/37 (67%), Positives = 25/37 (67%)
Frame = -3 / +3
Query: 468 HLLTEALLSNAG*FPCNRTIDPXXXXXXXXXLWFYPK 358
HLLTEALLSNA *FPCN TIDP L FYPK
Sbjct: 399 HLLTEALLSNAR*FPCNHTIDPLLLIKLVPLLLFYPK 509
Score = 43.2 bits (88), Expect(3) = e-110
Identities = 16/19 (84%), Positives = 18/19 (94%)
Frame = +3 / -3
Query: 702 MNAKEPEKHVFHLVTDKLN 758
+N +EPEKHVFHLVTDKLN
Sbjct: 59 INFQEPEKHVFHLVTDKLN 3
Score = 40.9 bits (83), Expect(3) = e-105
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = -1 / +3
Query: 758 VQFVSNKMKYMFFRLLSIH 702
VQFV NKMKYMFFRLL I+
Sbjct: 3 VQFVGNKMKYMFFRLLKIY 59
Score = 40.0 bits (81), Expect(4) = 2e-049
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = -2 / +1
Query: 244 TEYILAMII*SRIKRTLES 188
TEYILAMII*SRI+RTLES
Sbjct: 712 TEYILAMII*SRIRRTLES 768
Score = 39.6 bits (80), Expect(3) = e-100
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = -2 / +1
Query: 760 KFSLSVTR*NTCFSGSLAFM 701
KFSLSVTR*NTCFSGS F+
Sbjct: 1 KFSLSVTR*NTCFSGS*KFI 60
Score = 38.2 bits (77), Expect(4) = 2e-049
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = -3 / +2
Query: 759 SSVCQ*QDEIHVFQAP 712
SSVC+*QDEIHVFQAP
Sbjct: 2 SSVCR*QDEIHVFQAP 49
Score = 36.3 bits (73), Expect(4) = 1e-082
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = +2 / -2
Query: 713 GA*KTCISSCY*QTEL 760
GA*KTCISSCY QTEL
Sbjct: 48 GA*KTCISSCYRQTEL 1
Score = 24.9 bits (48), Expect(3) = 2e-046
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +1 / -1
Query: 703 *MLRSLKNMYFI 738
*+ RSLKNMYFI
Sbjct: 58 *IFRSLKNMYFI 23
>gb|CW512335.1|CW512335 115_1_10510445_1_30023 Sorghum unfiltered library (LibID: 115)
Sorghum bicolor genomic clone 10510445, DNA sequence
Length = 635
Score = 273 bits (591), Expect(2) = e-106
Identities = 118/120 (98%), Positives = 119/120 (99%)
Frame = +3 / -2
Query: 354 SASDRTKAMGQVLSKARDLLYDCKEITQRLRAMLQSADEQVRSLKKQSTFLSQLAAKTIP 533
SASDR KAMGQVLSKARDLLYDCKEIT+RLRAMLQSADEQVRSLKKQSTFLSQLAAKTIP
Sbjct: 364 SASDRIKAMGQVLSKARDLLYDCKEITERLRAMLQSADEQVRSLKKQSTFLSQLAAKTIP 185
Query: 534 NGIHCLSMRLTIDYYLLSPEKRKFPNSENLENPDLYHYALFSDNVLAASVVVNSTIMNAK 713
NGIHCLSMRLTIDYYLLSPEKRKFPNSENLENPDLYHYALFSDNVLAASVVVNSTIMNAK
Sbjct: 184 NGIHCLSMRLTIDYYLLSPEKRKFPNSENLENPDLYHYALFSDNVLAASVVVNSTIMNAK 5
Score = 253 bits (547), Expect(2) = e-102
Identities = 107/119 (89%), Positives = 114/119 (95%)
Frame = -1 / +2
Query: 713 LSIHDG*VDHN*CCQNIVREKSIMVKIRIFQVLTIWELSFLWREKIIINR*AHGKTMDAI 534
L IHDG*VDHN*CCQNIVREKSI+VKIRIFQ+LTI ELSFLWR+K+IIN *AHGKTMDAI
Sbjct: 5 LCIHDG*VDHN*CCQNIVREKSIVVKIRIFQILTIGELSFLWRQKVIINC*AHGKTMDAI 184
Query: 533 WDCLSC*LAKEGALLLQAPDLLIC*LKHCSQTLGNFLAIVQ*IPCF**NLAHCFGSIRS 357
WDCLSC LAK+GALLLQAPDLLIC*LKHCSQTLGNFLAI+Q*IPCF**NL+HCF SIRS
Sbjct: 185 WDCLSCQLAKKGALLLQAPDLLIC*LKHCSQTLGNFLAIIQ*IPCF**NLSHCFYSIRS 361
Score = 239 bits (517), Expect(2) = 5e-097
Identities = 106/113 (93%), Positives = 109/113 (96%)
Frame = -2 / +3
Query: 715 SLAFMMVELTTTDAAKTLSEKRA*W*RSGFSRFSLFGNFLFSGERR**SIVKRMERQWMP 536
+ AFMMVELTTTDAAKTLSEKRA*W*RSGFS+FSL GNFLFSG+RR**SIVKRMERQWMP
Sbjct: 3 TFAFMMVELTTTDAAKTLSEKRA*W*RSGFSKFSLLGNFLFSGDRR**SIVKRMERQWMP 182
Query: 535 FGIVLAASWLRKVLCFFKLRTCSSAD*SIALKRWVISLQSYNRSLAFDKTWPI 377
FGIVLAASWLRKVLCFFKLRTCSSAD*SIALKR VISLQSYNRSLAFDKT PI
Sbjct: 183 FGIVLAASWLRKVLCFFKLRTCSSAD*SIALKRSVISLQSYNRSLAFDKTCPI 341
Score = 141 bits (302), Expect(2) = e-102
Identities = 56/61 (91%), Positives = 58/61 (95%)
Frame = -3 / +3
Query: 354 SWEVQHQQ*LPQGIAGFP*ALQAAPDRDQACPSIWQEQNIFWP*SFDLASNGPLNLPFHF 175
SWEV+HQQ*LPQG AGFP*ALQAAPDRDQACPSIWQEQNIFWP*SFDLAS+ PLNLP HF
Sbjct: 453 SWEVRHQQ*LPQGSAGFP*ALQAAPDRDQACPSIWQEQNIFWP*SFDLASDEPLNLPSHF 632
Query: 174 H 172
H
Sbjct: 633 H 635
Score = 137 bits (294), Expect(2) = 5e-097
Identities = 56/60 (93%), Positives = 58/60 (96%)
Frame = -1 / +1
Query: 353 LGKFSISSSFPKGSLAFLEPCKQLLIEIKLVPRFGKNRIYSGHDHLISHQTDP*ICLFIF 174
LGKF ISSSFPKG+LAFLEPCKQLLIEIKLVPRFGKNRIYSGHDHLISHQT+P*ICL IF
Sbjct: 454 LGKFGISSSFPKGALAFLEPCKQLLIEIKLVPRFGKNRIYSGHDHLISHQTNP*ICLLIF 633
Score = 136 bits (291), Expect(2) = 7e-046
Identities = 56/69 (81%), Positives = 58/69 (84%)
Frame = +2 / -2
Query: 185 GRFKGPFDARSNDHGQNIFCSCQIEGQA*SLSGAACKAQGKPAIPWGSYC*C*TSQECFG 364
GRFKG DARSNDHGQNIFCSCQIEGQA*SLSGAACKAQGKPA+PWGSYC*C TSQE
Sbjct: 622 GRFKGSSDARSNDHGQNIFCSCQIEGQA*SLSGAACKAQGKPALPWGSYC*CRTSQEVVP 443
Query: 365 *NQSNGPSF 391
GP+F
Sbjct: 442 TRTIFGPNF 416
Score = 134 bits (288), Expect(2) = e-106
Identities = 60/60 (100%), Positives = 60/60 (100%)
Frame = +3 / -3
Query: 174 ENEKADSRVRLMRDQMIMARIYSVLAKSRDKLDLYQELLARLKESQRSLGEATADAELPK 353
ENEKADSRVRLMRDQMIMARIYSVLAKSRDKLDLYQELLARLKESQRSLGEATADAELPK
Sbjct: 633 ENEKADSRVRLMRDQMIMARIYSVLAKSRDKLDLYQELLARLKESQRSLGEATADAELPK 454
Score = 134 bits (287), Expect(3) = 3e-080
Identities = 58/65 (89%), Positives = 59/65 (90%)
Frame = +1 / -3
Query: 520 LRQSQMASIVFPCA*RLIIIFSLQRKESSQIVRTWKILIFTIMLFSRTMFWQHQLWSTQP 699
LRQSQMASIVFPCA*+LII F LQRKESS IVR WKILIFT MLFSRTMFWQHQLWSTQP
Sbjct: 198 LRQSQMASIVFPCA*QLIITFCLQRKESSPIVRIWKILIFTTMLFSRTMFWQHQLWSTQP 19
Query: 700 S*MLR 714
S*M R
Sbjct: 18 S*MQR 4
Score = 132 bits (283), Expect(3) = 3e-080
Identities = 57/61 (93%), Positives = 58/61 (95%)
Frame = +1 / -1
Query: 172 MKMKRQIQGSV*CEIK*SWPEYILFLPNRGTSLISIRSCLQGSRKASDPLGKLLLMLNFP 351
MKM+RQIQG V*CEIK*SWPEYILFLPNRGTSLISIRSCLQGSRKAS PLGKLLLM NFP
Sbjct: 635 MKMRRQIQGFV*CEIK*SWPEYILFLPNRGTSLISIRSCLQGSRKASAPLGKLLLMPNFP 456
Query: 352 R 354
R
Sbjct: 455 R 453
Score = 127 bits (273), Expect(3) = 3e-047
Identities = 50/57 (87%), Positives = 51/57 (89%)
Frame = -3 / +1
Query: 714 P*HS*WLS*PQLMLPKHCPRKEHNGKDQDFPGSHYLGTFFSLEREDNNQSLSAWKDN 544
P HS*WLS*PQLMLPKHCPRKEH+GKDQDFP SHY GTFFSLE E NNQ LSAWKDN
Sbjct: 4 PLHS*WLS*PQLMLPKHCPRKEHSGKDQDFPNSHYWGTFFSLETEGNNQLLSAWKDN 174
Score = 121 bits (259), Expect = 2e-026
Identities = 57/78 (73%), Positives = 60/78 (76%)
Frame = +2 / -1
Query: 359 FG*NQSNGPSFIKSKGSIVRLQGNYPAFESNASVSR*AGXXXXXXXXXXXXXSS*DNPKW 538
FG*N+SNG SFIKSKGSIV LQGNY AFESNASVSR*AG S*DNPKW
Sbjct: 359 FG*NKSNGTSFIKSKGSIV*LQGNYRAFESNASVSR*AGPELEEAEHLS*PAGS*DNPKW 180
Query: 539 HPLSFHALND*LLSSLSR 592
HPLSFHALN+*LL S+SR
Sbjct: 179 HPLSFHALNN*LLPSVSR 126
Score = 73.5 bits (154), Expect(3) = 3e-080
Identities = 30/33 (90%), Positives = 30/33 (90%)
Frame = +1 / -3
Query: 358 LRIEPKQWAKFYQKQGIYCTIARKLPSV*EQCF 456
LRIE KQW KFYQKQGIYC IARKLPSV*EQCF
Sbjct: 360 LRIE*KQWDKFYQKQGIYCMIARKLPSV*EQCF 262
Score = 73.0 bits (153), Expect(2) = 7e-046
Identities = 28/29 (96%), Positives = 28/29 (96%)
Frame = +2 / -1
Query: 629 S*SLPLCSFLGQCFGSISCGQLNHHEC*G 715
S*SLPLCSFLGQCFGSISCGQLNHHEC G
Sbjct: 89 S*SLPLCSFLGQCFGSISCGQLNHHECKG 3
Score = 54.7 bits (113), Expect(3) = 3e-047
Identities = 25/37 (67%), Positives = 25/37 (67%)
Frame = -3 / +1
Query: 468 HLLTEALLSNAG*FPCNRTIDPXXXXXXXXXLWFYPK 358
HLLTEALLSNA *FPCN TIDP L FYPK
Sbjct: 250 HLLTEALLSNAR*FPCNHTIDPLLLIKLVPLLLFYPK 360
Score = 51.0 bits (105), Expect(3) = 3e-047
Identities = 23/24 (95%), Positives = 24/24 (100%)
Frame = -2 / +2
Query: 244 TEYILAMII*SRIKRTLESAFSFS 173
TEYILAMII*SRI+RTLESAFSFS
Sbjct: 563 TEYILAMII*SRIRRTLESAFSFS 634
>gb|CL179386.1|CL179386 104_388_10895272_148_31909_184 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10895272, DNA
sequence
Length = 735
Score = 296 bits (641), Expect(2) = e-102
Identities = 115/156 (73%), Positives = 136/156 (87%)
Frame = +3 / -3
Query: 609 NSENLENPDLYHYALFSDNVLAASVVVNSTIMNAKEPEKHVFHLVTDKLNFGAMNMWFLL 788
+ E LE+ LYHYA+FSDNVLAASVVV ST+ NA EPEKHVFH+VTD+LNF AM MWF+
Sbjct: 469 DKEKLEDRSLYHYAIFSDNVLAASVVVRSTVTNANEPEKHVFHIVTDRLNFAAMKMWFIT 290
Query: 789 NPPGDATIHVENVDDFKWLNSSYCPVLKQLESAAMKEYYFKADRPKTLSAGSSNLKYRNP 968
+PP AT+HVEN+D+FKWLNSSYC VL+QLESA +KEYYFKA P +LS G+ NLKYRNP
Sbjct: 289 HPPQLATVHVENIDNFKWLNSSYCSVLRQLESARLKEYYFKAHDPSSLSDGNENLKYRNP 110
Query: 969 KYLSMLNHLRFYLPQVYPKLNKILFLDDDIVVQRDL 1076
KYLSMLNHLRFY+P+++PKL KILFLDDD+VVQ+DL
Sbjct: 109 KYLSMLNHLRFYMPEIHPKLEKILFLDDDVVVQKDL 2
Score = 189 bits (408), Expect(2) = 6e-055
Identities = 96/155 (61%), Positives = 106/155 (68%)
Frame = -2 / +3
Query: 1075 RSLWTTISSSRKRILFSLG*TCGR*NLR*LSMDKYFGFRYFRLEEPAESVFGRSALK*YS 896
+S TT SSSR I S G* G *NL+ LSMD+Y GF YFR P+ES G ALK*YS
Sbjct: 3 KSFCTTTSSSRNSIFSSFG*ISGM*NLKWLSMDRYLGFLYFRFSFPSESDDGSCALK*YS 182
Query: 895 FMAADSSCFRTGQ*EEFNHLKSSTFSTWIVASPGGFSKNHMFMAPKFSLSVTR*NTCFSG 716
ADSSC RT Q +E +HLK S FST VAS GG NH+FMA K SLSVT NTCFSG
Sbjct: 183 LRRADSSCRRTEQYDELSHLKLSMFST*TVAS*GG*VMNHIFMAAKLSLSVTIWNTCFSG 362
Query: 715 SLAFMMVELTTTDAAKTLSEKRA*W*RSGFSRFSL 611
SLAF+ V+LTTT+AA TLSE A*W* S FSL
Sbjct: 363 SLAFVTVDLTTTEAASTLSENIA*W*SDRSSSFSL 467
Score = 125 bits (268), Expect(2) = 3e-029
Identities = 56/153 (36%), Positives = 97/153 (63%)
Frame = -1 / +2
Query: 1067 LDNYIIIQEKNFIQLGIDLWEVKS*MIEHGQIFWVSILQIRRTSRECFRTISLEIIFFHG 888
L N III+++ ++L ++ W V+ M+EHGQIF + + QI + RE R + E+IFF
Sbjct: 11 LYNNIIIKKQYLLKLRMNFWHVEPQMVEHGQIFGIPVFQILVSIRE**RIVCFEVIFFEA 190
Query: 887 CRLKLLQNRAVRRV*PFEVINIFHMDCCIPRWIQQKPHVHGPKVQFVSNKMKYMFFRLLS 708
L+L +NR V R+ PFE++ + HM+ C R + +PH+HG K++ +S+ M+++ +
Sbjct: 191 S*LQLPKNRTV*RIEPFEIVYVLHMNSCQLRRMSNEPHLHGCKIKSISDNMEHVLLWFIG 370
Query: 707 IHDG*VDHN*CCQNIVREKSIMVKIRIFQVLTI 609
I * D+ * C++I+R+ SI+V+ I ++ I
Sbjct: 371 ICHS*SDNY*GCKHIIRKYSIVVE*PILKLFFI 469
Score = 98.2 bits (208), Expect(2) = e-102
Identities = 40/69 (57%), Positives = 54/69 (78%)
Frame = +3 / -3
Query: 372 KAMGQVLSKARDLLYDCKEITQRLRAMLQSADEQVRSLKKQSTFLSQLAAKTIPNGIHCL 551
KAMG VLS ARD+LY E++++LRAMLQS + + ++KKQ++FL Q AAKT+P +HCL
Sbjct: 733 KAMGHVLSSARDVLYSSGEVSRKLRAMLQSTELNIDAVKKQNSFLVQHAAKTVPMPLHCL 554
Query: 552 SMRLTIDYY 578
M+LT DYY
Sbjct: 553 HMQLTTDYY 527
Score = 46.9 bits (96), Expect(2) = 6e-055
Identities = 30/74 (40%), Positives = 36/74 (48%)
Frame = -2 / +3
Query: 598 LFSGERR**SIVKRMERQWMPFGIVLAASWLRKVLCFFKLRTCSSAD*SIALKRWVISLQ 419
L + R+**S+V + RQ G V AA R CFF SS D +IA S +
Sbjct: 507 LVASSRK**SVVSCICRQCKGMGTVFAAC*TRNEFCFFTASIFSSVDCNIARNFLDTSPE 686
Query: 418 SYNRSLAFDKTWPI 377
Y SLA D T PI
Sbjct: 687 LYRTSLAEDSTCPI 728
Score = 24.9 bits (48), Expect(2) = 3e-029
Identities = 21/70 (30%), Positives = 32/70 (45%)
Frame = -1 / +2
Query: 581 KIIINR*AHGKTMDAIWDCLSC*LAKEGALLLQAPDLLIC*LKHCSQTLGNFLAIVQ*IP 402
KIII+ H + CL L ++ L L ++ *L+H +Q +F VQ I
Sbjct: 524 KIIISCQLHM*AVQGHGYCLRSMLNQK*VLFLHCINI*FR*LQHSTQFS*HFTRAVQNIS 703
Query: 401 CF**NLAHCF 372
++ HCF
Sbjct: 704 SRRQHMPHCF 733
>gb|CF480456.1|CF480456 POL1_65_H05.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_65_H05_A002 5', mRNA sequence
Length = 748
Score = 353 bits (766), Expect(2) = 9e-097
Identities = 158/163 (96%), Positives = 160/163 (98%)
Frame = +3 / +1
Query: 33 RVAVRKKMEVXQQDDEALVKLENAGIERSKAVDSAVLGKYSIWRRENENEKADSRVRLMR 212
R+ VRKKMEV QQDDEALVKLENAGIERSKAVDSAVLGKYSIWRRENENEKADSRVRLMR
Sbjct: 259 RIGVRKKMEVMQQDDEALVKLENAGIERSKAVDSAVLGKYSIWRRENENEKADSRVRLMR 438
Query: 213 DQMIMARIYSVLAKSRDKLDLYQELLARLKESQRSLGEATADAELPKSASDRTKAMGQVL 392
DQMIMARIYSVLAKSRDKLDLYQELLARLKESQRSLGEATADAELPKSASDR KAMGQVL
Sbjct: 439 DQMIMARIYSVLAKSRDKLDLYQELLARLKESQRSLGEATADAELPKSASDRIKAMGQVL 618
Query: 393 SKARDLLYDCKEITQRLRAMLQSADEQVRSLKKQSTFLSQLAA 521
SKARDLLYDCKEIT+RLRAMLQSADEQVRSLKKQSTFLSQLAA
Sbjct: 619 SKARDLLYDCKEITERLRAMLQSADEQVRSLKKQSTFLSQLAA 747
Score = 349 bits (757), Expect = 4e-095
Identities = 146/164 (89%), Positives = 154/164 (93%)
Frame = -1 / -2
Query: 521 SC*LAKEGALLLQAPDLLIC*LKHCSQTLGNFLAIVQ*IPCF**NLAHCFGSIRSTLGKF 342
SC LAK+GALLLQAPDLLIC*LKHCSQTLGNFLAI+Q*IPCF**NL+HCF SIRS LGKF
Sbjct: 747 SCQLAKKGALLLQAPDLLIC*LKHCSQTLGNFLAIIQ*IPCF**NLSHCFYSIRSALGKF 568
Query: 341 SISSSFPKGSLAFLEPCKQLLIEIKLVPRFGKNRIYSGHDHLISHQTDP*ICLFIFIFTS 162
ISSSFPKG+LAFLEPCKQLLIEIKLVPRFGKNRIYSGHDHLISHQT+P*ICL IFIF S
Sbjct: 567 GISSSFPKGALAFLEPCKQLLIEIKLVPRFGKNRIYSGHDHLISHQTNP*ICLLIFIFAS 388
Query: 161 PDAVFSQHSRVNSF*TFDTCILKFN*RFIILLXYFHFLPYSNSP 30
PD VFSQHSR+NSF* FDTC+LKFN* FIILL YFHFLPY+NSP
Sbjct: 387 PDTVFSQHSRINSF*AFDTCVLKFN*CFIILLHYFHFLPYTNSP 256
Score = 281 bits (607), Expect = 2e-074
Identities = 125/149 (83%), Positives = 131/149 (87%)
Frame = +2 / +3
Query: 29 KESCCKEENGSXAAG**SVS*T*ECRYRTFKSC*LCCAGKIQHLET*XXXXXGRFKGPFD 208
+E+ CKEENGS AAG**S+S*T*E RYRT KSC* CCAGKIQ+LET GRFKG D
Sbjct: 255 RENWCKEENGSNAAG**SIS*T*ERRYRTLKSC*FCCAGKIQYLETRK*K*EGRFKGSSD 434
Query: 209 ARSNDHGQNIFCSCQIEGQA*SLSGAACKAQGKPAIPWGSYC*C*TSQECFG*NQSNGPS 388
ARSNDHGQNIFCSCQIEGQA*SLSGAACKAQGKPA+PWGSYC*C TSQE FG*N+SNG S
Sbjct: 435 ARSNDHGQNIFCSCQIEGQA*SLSGAACKAQGKPALPWGSYC*CRTSQERFG*NKSNGTS 614
Query: 389 FIKSKGSIVRLQGNYPAFESNASVSR*AG 475
FIKSKGSIV LQGNY AFESNASVSR*AG
Sbjct: 615 FIKSKGSIV*LQGNYRAFESNASVSR*AG 701
Score = 258 bits (557), Expect(2) = 6e-068
Identities = 111/124 (89%), Positives = 112/124 (90%)
Frame = +1 / +2
Query: 85 *LNLRMQVSNVQKLLTLLCWENTASGDVKMKMKRQIQGSV*CEIK*SWPEYILFLPNRGT 264
*LNLR QVSN QKLL LLCWENT SGD KMKM+RQIQG V*CEIK*SWPEYILFLPNRGT
Sbjct: 311 *LNLRTQVSNAQKLLILLCWENTVSGDAKMKMRRQIQGFV*CEIK*SWPEYILFLPNRGT 490
Query: 265 SLISIRSCLQGSRKASDPLGKLLLMLNFPRVLRIEPKQWAKFYQKQGIYCTIARKLPSV* 444
SLISIRSCLQGSRKAS PLGKLLLM NFPR LRIE KQW KFYQKQGIYC IARKLPSV*
Sbjct: 491 SLISIRSCLQGSRKASAPLGKLLLMPNFPRALRIE*KQWDKFYQKQGIYCMIARKLPSV* 670
Query: 445 EQCF 456
EQCF
Sbjct: 671 EQCF 682
Score = 243 bits (525), Expect(2) = 1e-065
Identities = 103/126 (81%), Positives = 107/126 (84%)
Frame = -3 / -1
Query: 468 HLLTEALLSNAG*FPCNRTIDPXXXXXXXXXLWFYPKHSWEVQHQQ*LPQGIAGFP*ALQ 289
HLLTEALLSNA *FPCN TIDP L FYPK SWEV+HQQ*LPQG AGFP*ALQ
Sbjct: 694 HLLTEALLSNAR*FPCNHTIDPLLLIKLVPLLLFYPKRSWEVRHQQ*LPQGSAGFP*ALQ 515
Query: 288 AAPDRDQACPSIWQEQNIFWP*SFDLASNGPLNLPFHFHFHVSRCCIFPAQQSQQLLNVR 109
AAPDRDQACPSIWQEQNIFWP*SFDLAS+ PLNLP HFHF VSR CIFPAQQ+QQLL+VR
Sbjct: 514 AAPDRDQACPSIWQEQNIFWP*SFDLASDEPLNLPSHFHFRVSRYCIFPAQQNQQLLSVR 335
Query: 108 YLHSQV 91
YL SQV
Sbjct: 334 YLRSQV 317
Score = 148 bits (318), Expect(2) = 7e-063
Identities = 66/71 (92%), Positives = 68/71 (95%)
Frame = -2 / -3
Query: 244 TEYILAMII*SRIKRTLESAFSFSFSRLQMLYFPSTAESTAFERSIPAFSSLTNASSSCC 65
TEYILAMII*SRI+RTLESAFSFSFSRLQ+LYFPSTAESTAFERSIPAFSSLTNASSSCC
Sbjct: 470 TEYILAMII*SRIRRTLESAFSFSFSRLQILYFPSTAESTAFERSIPAFSSLTNASSSCC 291
Query: 64 XTSIFFLTATL 32
TSIFFLT L
Sbjct: 290 ITSIFFLTPIL 258
Score = 114 bits (244), Expect(2) = 7e-063
Identities = 51/71 (71%), Positives = 52/71 (73%)
Frame = -2 / -3
Query: 520 AASWLRKVLCFFKLRTCSSAD*SIALKRWVISLQSYNRSLAFDKTWPIXXXXXXXXXXXX 341
AASWLRKVLCFFKLRTCSSAD*SIALKR VISLQSYNRSLAFDKT PI
Sbjct: 746 AASWLRKVLCFFKLRTCSSAD*SIALKRSVISLQSYNRSLAFDKTCPIAFILSEALLGSS 567
Query: 340 XXXXXSPRDRW 308
SPR+RW
Sbjct: 566 ASAVASPRERW 534
Score = 29.0 bits (57), Expect(2) = 1e-065
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2 / -3
Query: 82 ASSSCCXTSIFFLTATLLNFMCVISFD 2
+SS C + F LNF+CVIS D
Sbjct: 305 SSSCCITSIFFLTPILPLNFLCVISSD 225
Score = 22.6 bits (43), Expect(2) = 9e-097
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +2 / +3
Query: 2 IKGNNTHEIK 31
I+GNNT EIK
Sbjct: 225 IRGNNTQEIK 254
Score = 22.1 bits (42), Expect(2) = 6e-068
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3 / +1
Query: 3 SKEITHMKLRRVAVRKKMEVXQQDDE 80
S+EITH KLR +K Q D+
Sbjct: 226 SEEITHRKLRGRIGVRKKMEVMQQDD 303
>gb|CW423526.1|CW423526 fsbb001f133g04k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f133g04, DNA
sequence
Length = 598
Score = 171 bits (369), Expect(3) = 8e-093
Identities = 66/71 (92%), Positives = 70/71 (98%)
Frame = +3 / -1
Query: 702 MNAKEPEKHVFHLVTDKLNFGAMNMWFLLNPPGDATIHVENVDDFKWLNSSYCPVLKQLE 881
+N +EPEKHVFHLVTDKLNFGAMNMWFLLNPPGDATIHVENVDDFKWLNSSYCPVL+QLE
Sbjct: 373 INFQEPEKHVFHLVTDKLNFGAMNMWFLLNPPGDATIHVENVDDFKWLNSSYCPVLRQLE 194
Query: 882 SAAMKEYYFKA 914
SAAM+EYYFKA
Sbjct: 193 SAAMREYYFKA 161
Score = 165 bits (354), Expect(3) = 6e-084
Identities = 66/67 (98%), Positives = 66/67 (98%)
Frame = +2 / -3
Query: 713 GA*KTCISSCY*QTELWGHEHVVFAESTWGCNNPCGKC**LQMVKLFLLPCSEAA*VCSH 892
GA*KTCISSCY QTELWGHEHVVFAESTWGCNNPCGKC**LQMVKLFLLPCSEAA*VCSH
Sbjct: 362 GA*KTCISSCYRQTELWGHEHVVFAESTWGCNNPCGKC**LQMVKLFLLPCSEAA*VCSH 183
Query: 893 ERILFQG 913
ERILFQG
Sbjct: 182 ERILFQG 162
Score = 163 bits (350), Expect(3) = 3e-088
Identities = 64/70 (91%), Positives = 66/70 (94%)
Frame = -1 / +2
Query: 911 LEIIFFHGCRLKLLQNRAVRRV*PFEVINIFHMDCCIPRWIQQKPHVHGPKVQFVSNKMK 732
LEI+F HGCRLKL QNRAVRRV*PFEVINIFHMDCCIPRWIQQKPHVHGPKVQFV NKMK
Sbjct: 164 LEIVFSHGCRLKLPQNRAVRRV*PFEVINIFHMDCCIPRWIQQKPHVHGPKVQFVGNKMK 343
Query: 731 YMFFRLLSIH 702
YMFFRLL I+
Sbjct: 344 YMFFRLLKIY 373
Score = 163 bits (350), Expect(3) = 6e-090
Identities = 66/69 (95%), Positives = 69/69 (100%)
Frame = -3 / +1
Query: 918 DQP*NNILSWLQTQAASEQGSKKSLTI*SHQHFPHGLLHPQVDSAKTTCSWPQSSVCQ*Q 739
D+P*N+ILSWLQTQAASEQGSKKSLTI*SHQHFPHGLLHPQVDSAKTTCSWPQSSVC+*Q
Sbjct: 157 DRP*NSILSWLQTQAASEQGSKKSLTI*SHQHFPHGLLHPQVDSAKTTCSWPQSSVCR*Q 336
Query: 738 DEIHVFQAP 712
DEIHVFQAP
Sbjct: 337 DEIHVFQAP 363
Score = 155 bits (332), Expect(3) = 5e-085
Identities = 66/71 (92%), Positives = 67/71 (94%)
Frame = -2 / +3
Query: 913 ALK*YSFMAADSSCFRTGQ*EEFNHLKSSTFSTWIVASPGGFSKNHMFMAPKFSLSVTR* 734
ALK*YS MAADSSC RTGQ*EEFNHLKSSTFSTWIVASPGGFSKNHMFMAPKFSLSVTR*
Sbjct: 162 ALK*YSLMAADSSCLRTGQ*EEFNHLKSSTFSTWIVASPGGFSKNHMFMAPKFSLSVTR* 341
Query: 733 NTCFSGSLAFM 701
NTCFSGS F+
Sbjct: 342 NTCFSGS*KFI 374
Score = 125 bits (268), Expect(2) = 4e-042
Identities = 53/64 (82%), Positives = 55/64 (85%)
Frame = +3 / -1
Query: 885 AAMKEYYFKADRPKTLSAGSSNLKYRNPKYLSMLNHLRFYLPQVYPKLNKILFLDDDIVV 1064
+A Y+ PKTLSAGSSNLKYRNPKYLSMLNHLRFYLPQVYPK NKILFLDDDIVV
Sbjct: 193 SAAMREYYFKAGPKTLSAGSSNLKYRNPKYLSMLNHLRFYLPQVYPKXNKILFLDDDIVV 14
Query: 1065 QRDL 1076
QRDL
Sbjct: 13 QRDL 2
Score = 111 bits (236), Expect(3) = 6e-090
Identities = 45/53 (84%), Positives = 47/53 (88%)
Frame = -3 / +1
Query: 1077 LGPSGQLYHHPGKEFYSAWDRLVGGKILDD*AWTNILGFDTSD*KNQQRVFSD 919
L PSGQL HHPGK FYS WD+L GGKILD *AWTNILGFDTSD*K+QQRVFSD
Sbjct: 1 LDPSGQLCHHPGKGFYSXWDKLGGGKILDG*AWTNILGFDTSD*KSQQRVFSD 159
Score = 110 bits (235), Expect(3) = 3e-088
Identities = 48/52 (92%), Positives = 49/52 (94%)
Frame = -2 / +3
Query: 1075 RSLWTTISSSRKRILFSLG*TCGR*NLR*LSMDKYFGFRYFRLEEPAESVFG 920
RSLWTT+SSSRKRILF LG*T GR*NLR LSMDKYFGFRYFRLEEPAESVFG
Sbjct: 3 RSLWTTMSSSRKRILFXLG*TWGR*NLRWLSMDKYFGFRYFRLEEPAESVFG 158
Score = 109 bits (233), Expect(3) = 5e-085
Identities = 45/53 (84%), Positives = 50/53 (94%)
Frame = -1 / +2
Query: 1076 *VPLDNYIIIQEKNFIQLGIDLWEVKS*MIEHGQIFWVSILQIRRTSRECFRT 918
*+PLDNY+IIQEK+FI LGI+L EVKS*M+EHGQIFWVSILQIRR SRECFRT
Sbjct: 2 *IPLDNYVIIQEKDFIXLGINLGEVKS*MVEHGQIFWVSILQIRRASRECFRT 160
Score = 106 bits (227), Expect(3) = 8e-093
Identities = 45/51 (88%), Positives = 46/51 (90%)
Frame = +2 / -3
Query: 920 SENTLCWFF*SEVSKPKIFVHAQSSKILPPTSLSQAE*NSFPG**YSCPEG 1072
SENTLCW F*SEVSKPKIFVHAQ SKILPP SLSQ E*N FPG**+SCPEG
Sbjct: 158 SENTLCWLF*SEVSKPKIFVHAQPSKILPPPSLSQXE*NPFPG**HSCPEG 6
Score = 103 bits (220), Expect(3) = 8e-093
Identities = 43/43 (100%), Positives = 43/43 (100%)
Frame = +3 / -3
Query: 585 SPEKRKFPNSENLENPDLYHYALFSDNVLAASVVVNSTIMNAK 713
SPEKRKFPNSENLENPDLYHYALFSDNVLAASVVVNSTIMNAK
Sbjct: 596 SPEKRKFPNSENLENPDLYHYALFSDNVLAASVVVNSTIMNAK 468
Score = 98.7 bits (209), Expect(3) = 6e-090
Identities = 38/43 (88%), Positives = 39/43 (90%)
Frame = -3 / +2
Query: 714 P*HS*WLS*PQLMLPKHCPRKEHNGKDQDFPGSHYLGTFFSLE 586
P HS*W S*PQLMLPKHCPRKEH+GKDQDFP SHY GTFFSLE
Sbjct: 467 PLHS*WWS*PQLMLPKHCPRKEHSGKDQDFPNSHYWGTFFSLE 595
Score = 96.4 bits (204), Expect(3) = 6e-084
Identities = 44/51 (86%), Positives = 44/51 (86%)
Frame = +1 / -2
Query: 919 VRKHSLLVLLI*SIETQNICPCSII*DFTSHKSIPS*IKFFSWMMI*LSRG 1071
VRKHSLL LLI*SIETQNICPCS I*DFTS K IP *IK FSWMM *LSRG
Sbjct: 159 VRKHSLLALLI*SIETQNICPCSTI*DFTSPKFIPX*IKSFSWMMT*LSRG 7
Score = 93.2 bits (197), Expect(3) = 3e-088
Identities = 38/47 (80%), Positives = 42/47 (89%)
Frame = -1 / +3
Query: 725 FFRLLSIHDG*VDHN*CCQNIVREKSIMVKIRIFQVLTIWELSFLWR 585
++ L IHDG VDHN*CCQNIVREKSI+VKIRIFQ+LTI ELSFLWR
Sbjct: 456 YYTNLCIHDGGVDHN*CCQNIVREKSIVVKIRIFQILTIGELSFLWR 596
Score = 91.8 bits (194), Expect(3) = 5e-085
Identities = 39/44 (88%), Positives = 42/44 (95%)
Frame = -2 / +1
Query: 715 SLAFMMVELTTTDAAKTLSEKRA*W*RSGFSRFSLFGNFLFSGE 584
+ AFMMVELTTTDAAKTLSEKRA*W*RSGFS+FSL GNFLFSG+
Sbjct: 466 TFAFMMVELTTTDAAKTLSEKRA*W*RSGFSKFSLLGNFLFSGD 597
Score = 91.3 bits (193), Expect(3) = 6e-084
Identities = 38/43 (88%), Positives = 38/43 (88%)
Frame = +1 / -1
Query: 586 LQRKESSQIVRTWKILIFTIMLFSRTMFWQHQLWSTQPS*MLR 714
LQRKESS IVR WKILIFT MLFSRTMFWQHQLWST PS*M R
Sbjct: 595 LQRKESSPIVRIWKILIFTTMLFSRTMFWQHQLWSTPPS*MQR 467
Score = 70.7 bits (148), Expect(2) = 4e-042
Identities = 27/29 (93%), Positives = 28/29 (96%)
Frame = +2 / -2
Query: 629 S*SLPLCSFLGQCFGSISCGQLNHHEC*G 715
S*SLPLCSFLGQCFGSISCGQL+HHEC G
Sbjct: 552 S*SLPLCSFLGQCFGSISCGQLHHHECKG 466
>gb|BI141600.1|BI141600 IP1_54_E05.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 398
Score = 308 bits (667), Expect = 1e-082
Identities = 128/129 (99%), Positives = 129/129 (100%)
Frame = +3 / +1
Query: 411 LYDCKEITQRLRAMLQSADEQVRSLKKQSTFLSQLAAKTIPNGIHCLSMRLTIDYYLLSP 590
LYDCKEIT+RLRAMLQSADEQVRSLKKQSTFLSQLAAKTIPNGIHCLSMRLTIDYYLLSP
Sbjct: 10 LYDCKEITERLRAMLQSADEQVRSLKKQSTFLSQLAAKTIPNGIHCLSMRLTIDYYLLSP 189
Query: 591 EKRKFPNSENLENPDLYHYALFSDNVLAASVVVNSTIMNAKEPEKHVFHLVTDKLNFGAM 770
EKRKFPNSENLENPDLYHYALFSDNVLAASVVVNSTIMNAKEPEKHVFHLVTDKLNFGAM
Sbjct: 190 EKRKFPNSENLENPDLYHYALFSDNVLAASVVVNSTIMNAKEPEKHVFHLVTDKLNFGAM 369
Query: 771 NMWFLLNPP 797
NMWFLLNPP
Sbjct: 370 NMWFLLNPP 396
Score = 288 bits (623), Expect = 1e-076
Identities = 118/129 (91%), Positives = 124/129 (96%)
Frame = -1 / -3
Query: 797 RWIQQKPHVHGPKVQFVSNKMKYMFFRLLSIHDG*VDHN*CCQNIVREKSIMVKIRIFQV 618
RWIQQKPHVHGPKVQFV NKMKYMFFRLL IHDG*VDHN*CCQNIVREKSI+VKIRIFQ+
Sbjct: 396 RWIQQKPHVHGPKVQFVGNKMKYMFFRLLCIHDG*VDHN*CCQNIVREKSIVVKIRIFQI 217
Query: 617 LTIWELSFLWREKIIINR*AHGKTMDAIWDCLSC*LAKEGALLLQAPDLLIC*LKHCSQT 438
LTI ELSFLWR+K+IIN *AHGKTMDAIWDCLSC LAK+GALLLQAPDLLIC*LKHCSQT
Sbjct: 216 LTIGELSFLWRQKVIINC*AHGKTMDAIWDCLSCQLAKKGALLLQAPDLLIC*LKHCSQT 37
Query: 437 LGNFLAIVQ 411
LGNFLAI+Q
Sbjct: 36 LGNFLAIIQ 10
Score = 287 bits (621), Expect = 2e-076
Identities = 125/130 (96%), Positives = 127/130 (97%)
Frame = -2 / -1
Query: 799 PGGFSKNHMFMAPKFSLSVTR*NTCFSGSLAFMMVELTTTDAAKTLSEKRA*W*RSGFSR 620
PGGFSKNHMFMAPKFSLSVTR*NTCFSGS AFMMVELTTTDAAKTLSEKRA*W*RSGFS+
Sbjct: 398 PGGFSKNHMFMAPKFSLSVTR*NTCFSGSFAFMMVELTTTDAAKTLSEKRA*W*RSGFSK 219
Query: 619 FSLFGNFLFSGERR**SIVKRMERQWMPFGIVLAASWLRKVLCFFKLRTCSSAD*SIALK 440
FSL GNFLFSG+RR**SIVKRMERQWMPFGIVLAASWLRKVLCFFKLRTCSSAD*SIALK
Sbjct: 218 FSLLGNFLFSGDRR**SIVKRMERQWMPFGIVLAASWLRKVLCFFKLRTCSSAD*SIALK 39
Query: 439 RWVISLQSYN 410
R VISLQSYN
Sbjct: 38 RSVISLQSYN 9
Score = 193 bits (417), Expect(2) = 5e-055
Identities = 77/85 (90%), Positives = 79/85 (92%)
Frame = -3 / -2
Query: 798 QVDSAKTTCSWPQSSVCQ*QDEIHVFQAP*HS*WLS*PQLMLPKHCPRKEHNGKDQDFPG 619
QVDSAKTTCSWPQSSVC+*QDEIHVFQAP HS*WLS*PQLMLPKHCPRKEH+GKDQDFP
Sbjct: 397 QVDSAKTTCSWPQSSVCR*QDEIHVFQAPLHS*WLS*PQLMLPKHCPRKEHSGKDQDFPN 218
Query: 618 SHYLGTFFSLEREDNNQSLSAWKDN 544
SHY GTFFSLE E NNQ LSAWKDN
Sbjct: 217 SHYWGTFFSLETEGNNQLLSAWKDN 143
Score = 178 bits (384), Expect(2) = 3e-048
Identities = 78/93 (83%), Positives = 79/93 (84%)
Frame = +1 / +2
Query: 520 LRQSQMASIVFPCA*RLIIIFSLQRKESSQIVRTWKILIFTIMLFSRTMFWQHQLWSTQP 699
LRQSQMASIVFPCA*+LII F LQRKESS IVR WKILIFT MLFSRTMFWQHQLWSTQP
Sbjct: 119 LRQSQMASIVFPCA*QLIITFCLQRKESSPIVRIWKILIFTTMLFSRTMFWQHQLWSTQP 298
Query: 700 S*MLRSLKNMYFIXXXXXXXXGP*TCGFC*IHL 798
S*M RSLKNMYFI GP*TCGFC*IHL
Sbjct: 299 S*MQRSLKNMYFILLPTN*TLGP*TCGFC*IHL 397
Score = 140 bits (301), Expect(2) = 1e-052
Identities = 55/57 (96%), Positives = 55/57 (96%)
Frame = +2 / +3
Query: 629 S*SLPLCSFLGQCFGSISCGQLNHHEC*GA*KTCISSCY*QTELWGHEHVVFAESTW 799
S*SLPLCSFLGQCFGSISCGQLNHHEC GA*KTCISSCY QTELWGHEHVVFAESTW
Sbjct: 228 S*SLPLCSFLGQCFGSISCGQLNHHECKGA*KTCISSCYRQTELWGHEHVVFAESTW 398
Score = 88.1 bits (186), Expect(2) = 1e-052
Identities = 42/61 (68%), Positives = 44/61 (72%)
Frame = +2 / +3
Query: 410 IVRLQGNYPAFESNASVSR*AGXXXXXXXXXXXXXSS*DNPKWHPLSFHALND*LLSSLS 589
IV LQGNY AFESNASVSR*AG S*DNPKWHPLSFHALN+*LL S+S
Sbjct: 9 IV*LQGNYRAFESNASVSR*AGPELEEAEHLS*PAGS*DNPKWHPLSFHALNN*LLPSVS 188
Query: 590 R 592
R
Sbjct: 189 R 191
Score = 43.2 bits (88), Expect(2) = 5e-055
Identities = 18/20 (90%), Positives = 18/20 (90%)
Frame = -3 / -2
Query: 468 HLLTEALLSNAG*FPCNRTI 409
HLLTEALLSNA *FPCN TI
Sbjct: 67 HLLTEALLSNAR*FPCNHTI 8
Score = 35.4 bits (71), Expect(2) = 3e-048
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +1 / +2
Query: 412 CTIARKLPSV*EQCF 456
C IARKLPSV*EQCF
Sbjct: 11 CMIARKLPSV*EQCF 55
>gb|BM325126.1|BM325126 PIC1_40_E09.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 630
Score = 275 bits (594), Expect = 1e-072
Identities = 107/207 (51%), Positives = 153/207 (73%)
Frame = +3 / +2
Query: 228 ARIYSVLAKSRDKLDLYQELLARLKESQRSLGEATADAELPKSASDRTKAMGQVLSKARD 407
A++Y L R ++L R++E Q+ LG+A+ D++L K+A+++ KA+ Q+L K +
Sbjct: 8 AKVYLGLGSIRANSQYLKDLRQRIREVQKVLGDASKDSDLLKNANEKVKALEQMLIKGKQ 187
Query: 408 LLYDCKEITQRLRAMLQSADEQVRSLKKQSTFLSQLAAKTIPNGIHCLSMRLTIDYYLLS 587
+ DC + ++LRAML SA+EQ+ + KKQ+ FL+QLAAKT+P G+HCL +RL +Y+ L
Sbjct: 188 MQDDCSIVVKKLRAMLHSAEEQLHAHKKQTVFLTQLAAKTLPKGLHCLPLRLANEYFSLD 367
Query: 588 PEKRKFPNSENLENPDLYHYALFSDNVLAASVVVNSTIMNAKEPEKHVFHLVTDKLNFGA 767
P +++FPN + L NP LYHYALFSDN+LA +VVVNST++NAK P HVFH+VTDKLN+
Sbjct: 368 PVRQQFPNQQKLINPKLYHYALFSDNILATAVVVNSTVLNAKHPSDHVFHIVTDKLNYAP 547
Query: 768 MNMWFLLNPPGDATIHVENVDDFKWLN 848
M MWFL NPPG ATI V+++ +F WLN
Sbjct: 548 MRMWFLSNPPGRATIEVQHIGEFTWLN 628
Score = 114 bits (243), Expect = 3e-024
Identities = 63/134 (47%), Positives = 75/134 (55%)
Frame = -2 / -1
Query: 847 FNHLKSSTFSTWIVASPGGFSKNHMFMAPKFSLSVTR*NTCFSGSLAFMMVELTTTDAAK 668
F+H+ S T IVA PGG +NH+ + FSLSVT T G LAF VELTTT A
Sbjct: 627 FSHVNSPICCTSIVALPGGLERNHILIGA*FSLSVTMWKT*SEGCLAFNTVELTTTAVAS 448
Query: 667 TLSEKRA*W*RSGFSRFSLFGNFLFSGERR**SIVKRMERQWMPFGIVLAASWLRKVLCF 488
LSE +A* G F FGN +G S+ RQ P G VLAAS +RK +CF
Sbjct: 447 ILSENKA**YSFGLMSFCWFGNCCRTGSNEKYSLASLRGRQ*RPLGRVLAASCVRKTVCF 268
Query: 487 FKLRTCSSAD*SIA 446
+CSSA+*SIA
Sbjct: 267 LCACSCSSAE*SIA 226
>gb|CW465474.1|CW465474 fsbb001f216e06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f216e06, DNA
sequence
Length = 663
Score = 236 bits (509), Expect(2) = 1e-067
Identities = 96/108 (88%), Positives = 101/108 (93%)
Frame = -1 / -3
Query: 353 LGKFSISSSFPKGSLAFLEPCKQLLIEIKLVPRFGKNRIYSGHDHLISHQTDP*ICLFIF 174
LGKF ISSSFPKG+LAFLEPCKQLLIEIKLVPRFGKNRIYSGHDHLISHQT+P*ICL IF
Sbjct: 505 LGKFGISSSFPKGALAFLEPCKQLLIEIKLVPRFGKNRIYSGHDHLISHQTNP*ICLLIF 326
Query: 173 IFTSPDAVFSQHSRVNSF*TFDTCILKFN*RFIILLXYFHFLPYSNSP 30
IF SPD VFSQHSR+NSF* FDTC+LKFN* FIILL YFHFLPY+NSP
Sbjct: 325 IFASPDTVFSQHSRINSF*AFDTCVLKFN*CFIILLHYFHFLPYTNSP 182
Score = 235 bits (508), Expect(2) = 2e-070
Identities = 104/107 (97%), Positives = 105/107 (98%)
Frame = +3 / +2
Query: 33 RVAVRKKMEVXQQDDEALVKLENAGIERSKAVDSAVLGKYSIWRRENENEKADSRVRLMR 212
R+ VRKKMEV QQDDEALVKLENAGIERSKAVDSAVLGKYSIWRRENENEKADSRVRLMR
Sbjct: 185 RIGVRKKMEVMQQDDEALVKLENAGIERSKAVDSAVLGKYSIWRRENENEKADSRVRLMR 364
Query: 213 DQMIMARIYSVLAKSRDKLDLYQELLARLKESQRSLGEATADAELPK 353
DQMIMARIYSVLAKSRDKLDLYQELLARLKESQRSLGEATADAELPK
Sbjct: 365 DQMIMARIYSVLAKSRDKLDLYQELLARLKESQRSLGEATADAELPK 505
Score = 211 bits (456), Expect = 1e-053
Identities = 93/121 (76%), Positives = 99/121 (81%)
Frame = +2 / +1
Query: 29 KESCCKEENGSXAAG**SVS*T*ECRYRTFKSC*LCCAGKIQHLET*XXXXXGRFKGPFD 208
+E+ CKEENGS AAG**S+S*T*E RYRT KSC* CCAGKIQ+LET GRFKG D
Sbjct: 181 RENWCKEENGSNAAG**SIS*T*ERRYRTLKSC*FCCAGKIQYLETRK*K*EGRFKGSSD 360
Query: 209 ARSNDHGQNIFCSCQIEGQA*SLSGAACKAQGKPAIPWGSYC*C*TSQECFG*NQSNGPS 388
ARSNDHGQNIFCSCQIEGQA*SLSGAACKAQGKPA+PWGSYC*C TSQE GP+
Sbjct: 361 ARSNDHGQNIFCSCQIEGQA*SLSGAACKAQGKPALPWGSYC*CRTSQEVVPTRTIFGPN 540
Query: 389 F 391
F
Sbjct: 541 F 543
Score = 191 bits (412), Expect(2) = 4e-051
Identities = 78/88 (88%), Positives = 82/88 (93%)
Frame = -3 / -2
Query: 354 SWEVQHQQ*LPQGIAGFP*ALQAAPDRDQACPSIWQEQNIFWP*SFDLASNGPLNLPFHF 175
SWEV+HQQ*LPQG AGFP*ALQAAPDRDQACPSIWQEQNIFWP*SFDLAS+ PLNLP HF
Sbjct: 506 SWEVRHQQ*LPQGSAGFP*ALQAAPDRDQACPSIWQEQNIFWP*SFDLASDEPLNLPSHF 327
Query: 174 HFHVSRCCIFPAQQSQQLLNVRYLHSQV 91
HF VSR CIFPAQQ+QQLL+VRYL SQV
Sbjct: 326 HFRVSRYCIFPAQQNQQLLSVRYLRSQV 243
Score = 187 bits (403), Expect(2) = 3e-053
Identities = 81/90 (90%), Positives = 82/90 (91%)
Frame = +1 / +3
Query: 85 *LNLRMQVSNVQKLLTLLCWENTASGDVKMKMKRQIQGSV*CEIK*SWPEYILFLPNRGT 264
*LNLR QVSN QKLL LLCWENT SGD KMKM+RQIQG V*CEIK*SWPEYILFLPNRGT
Sbjct: 237 *LNLRTQVSNAQKLLILLCWENTVSGDAKMKMRRQIQGFV*CEIK*SWPEYILFLPNRGT 416
Query: 265 SLISIRSCLQGSRKASDPLGKLLLMLNFPR 354
SLISIRSCLQGSRKAS PLGKLLLM NFPR
Sbjct: 417 SLISIRSCLQGSRKASAPLGKLLLMPNFPR 506
Score = 148 bits (318), Expect = 2e-034
Identities = 66/71 (92%), Positives = 68/71 (95%)
Frame = -2 / -1
Query: 244 TEYILAMII*SRIKRTLESAFSFSFSRLQMLYFPSTAESTAFERSIPAFSSLTNASSSCC 65
TEYILAMII*SRI+RTLESAFSFSFSRLQ+LYFPSTAESTAFERSIPAFSSLTNASSSCC
Sbjct: 396 TEYILAMII*SRIRRTLESAFSFSFSRLQILYFPSTAESTAFERSIPAFSSLTNASSSCC 217
Query: 64 XTSIFFLTATL 32
TSIFFLT L
Sbjct: 216 ITSIFFLTPIL 184
Score = 52.8 bits (109), Expect(2) = 2e-070
Identities = 22/23 (95%), Positives = 22/23 (95%)
Frame = +3 / +1
Query: 354 SASDRTKAMGQVLSKARDLLYDC 422
SASDR KAMGQVLSKARDLLYDC
Sbjct: 595 SASDRIKAMGQVLSKARDLLYDC 663
Score = 43.7 bits (89), Expect(2) = 3e-053
Identities = 17/21 (80%), Positives = 17/21 (80%)
Frame = +1 / +2
Query: 358 LRIEPKQWAKFYQKQGIYCTI 420
LRIE KQW KFY KQGIYC I
Sbjct: 599 LRIE*KQWDKFYPKQGIYCMI 661
Score = 43.2 bits (88), Expect(2) = 1e-067
Identities = 18/22 (81%), Positives = 20/22 (90%)
Frame = -1 / -1
Query: 422 AIVQ*IPCF**NLAHCFGSIRS 357
AI+Q*IPCF *NL+HCF SIRS
Sbjct: 663 AIIQ*IPCFG*NLSHCFYSIRS 598
Score = 32.2 bits (64), Expect(2) = 4e-051
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = -2 / -2
Query: 421 QSYNRSLAFDKTWPI 377
QSYNRSLA DKT PI
Sbjct: 662 QSYNRSLALDKTCPI 618
>gb|CW031244.1|CW031244 104_259_10500694_114_30397 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10500694, DNA
sequence
Length = 776
Score = 143 bits (306), Expect(2) = 1e-066
Identities = 56/114 (49%), Positives = 77/114 (67%)
Frame = +3 / +3
Query: 618 NLENPDLYHYALFSDNVLAASVVVNSTIMNAKEPEKHVFHLVTDKLNFGAMNMWFLLNPP 797
NL + LYH+ +FSDN+LA SVVVNST +N++ P+K VFHLVTD LN+ M WF +N
Sbjct: 87 NLRDNSLYHFCVFSDNILAVSVVVNSTAINSRHPDKVVFHLVTDDLNYAPMKAWFAMNDY 266
Query: 798 GDATIHVENVDDFKWLNSSYCPVLKQLESAAMKEYYFKADRPKTLSAGSSNLKY 959
T+ ++ V+DF WLN+SY PVLKQL++AA +++YF + N KY
Sbjct: 267 RGVTVDIQKVEDFTWLNASYVPVLKQLQNAATQKFYFSGSGNRGTPIKFRNPKY 428
Score = 133 bits (284), Expect(2) = 1e-066
Identities = 49/68 (72%), Positives = 63/68 (92%)
Frame = +3 / +3
Query: 951 LKYRNPKYLSMLNHLRFYLPQVYPKLNKILFLDDDIVVQRDLTGLWEVDLNGNVNGAVET 1130
+K+RNPKYLSMLNHLRFY+P++YP+L K++FLDDDIVVQ+DL+ L+ ++LNGNV GAVET
Sbjct: 405 IKFRNPKYLSMLNHLRFYIPEIYPELQKVVFLDDDIVVQKDLSELFTINLNGNVMGAVET 584
Query: 1131 CGESFHRF 1154
C E+FHRF
Sbjct: 585 CMETFHRF 608
Score = 79.0 bits (166), Expect(2) = 2e-026
Identities = 41/85 (48%), Positives = 50/85 (58%)
Frame = -2 / -2
Query: 907 K*YSFMAADSSCFRTGQ*EEFNHLKSSTFSTWIVASPGGFSKNHMFMAPKFSLSVTR*NT 728
K* ++AA SC RTG + + +KSSTF V F NH F+ F SVTR* T
Sbjct: 376 K*NFWVAAFCSCLRTGTYDALSQVKSSTFCMSTVTPL*SFMANHAFIGA*FKSSVTR*KT 197
Query: 727 CFSGSLAFMMVELTTTDAAKTLSEK 653
SG L F+ VELTTT+ A+ LSEK
Sbjct: 196 TLSGCLEFIAVELTTTETARMLSEK 122
Score = 62.5 bits (130), Expect(2) = 2e-026
Identities = 32/60 (53%), Positives = 37/60 (61%)
Frame = -2 / -2
Query: 1141 LSPHVSTAPFTFPLRSTSQSPVRSLWTTISSSRKRILFSLG*TCGR*NLR*LSMDKYFGF 962
+S VSTAP T PLR + RS TTISSSR + G G *NL+ LS+DKYFGF
Sbjct: 595 VSMQVSTAPITLPLRLIVNNSDRSF*TTISSSRNTTFCNSGYISGM*NLKWLSIDKYFGF 416
>gb|BZ695088.1|BZ695088 SP__Ba0057N21.r SP__Ba Sorghum propinquum genomic clone SP__Ba0057N21
3', DNA sequence
Length = 1000
Score = 150 bits (323), Expect(2) = 5e-063
Identities = 55/71 (77%), Positives = 67/71 (94%)
Frame = +3 / -3
Query: 945 SNLKYRNPKYLSMLNHLRFYLPQVYPKLNKILFLDDDIVVQRDLTGLWEVDLNGNVNGAV 1124
SNLKYRNPKYLS+LNHLRFYLP++YPKL+K++FLDDDIVV++DLT LW +++ G VNGAV
Sbjct: 356 SNLKYRNPKYLSILNHLRFYLPEIYPKLDKMVFLDDDIVVKKDLTALWSINMKGKVNGAV 177
Query: 1125 ETCGESFHRFD 1157
ETCGESFHR+D
Sbjct: 176 ETCGESFHRYD 144
Score = 112 bits (240), Expect(2) = 5e-063
Identities = 42/70 (60%), Positives = 52/70 (74%)
Frame = +3 / -3
Query: 711 KEPEKHVFHLVTDKLNFGAMNMWFLLNPPGDATIHVENVDDFKWLNSSYCPVLKQLESAA 890
+ P HVFH+VTDKLN+ M MWFL NPPG ATI V+++ +F WLN SY PVLKQL S +
Sbjct: 578 QHPSDHVFHIVTDKLNYAPMRMWFLSNPPGKATIEVQHIGEFTWLNDSYSPVLKQLGSPS 399
Query: 891 MKEYYFKADR 920
M +YYF +R
Sbjct: 398 MIDYYFGTNR 369
Score = 100 bits (213), Expect(3) = 3e-037
Identities = 46/69 (66%), Positives = 51/69 (73%)
Frame = -2 / +1
Query: 1150 R*KLSPHVSTAPFTFPLRSTSQSPVRSLWTTISSSRKRILFSLG*TCGR*NLR*LSMDKY 971
R KLSPHVSTAPFTFP Q VRS +TT+SSSRK IL S G* GR* R*L +D+Y
Sbjct: 151 RWKLSPHVSTAPFTFPFILIDQRAVRSFFTTMSSSRKTILSSFG*ISGR*KRR*LRIDRY 330
Query: 970 FGFRYFRLE 944
FGFRYF+ E
Sbjct: 331 FGFRYFKFE 357
Score = 63.4 bits (132), Expect(3) = 3e-037
Identities = 32/65 (49%), Positives = 37/65 (56%)
Frame = -2 / +1
Query: 934 ESVFGRSALK*YSFMAADSSCFRTGQ*EEFNHLKSSTFSTWIVASPGGFSKNHMFMAPKF 755
ES F R K* S M D SC TG * F+H+ S T IVA PGG +NH+ + F
Sbjct: 355 ESEFARFVPK**SIMDGDPSCLSTGL*LSFSHVNSPICCTSIVAFPGGLERNHILIGA*F 534
Query: 754 SLSVT 740
SLSVT
Sbjct: 535 SLSVT 549
Score = 31.8 bits (63), Expect(3) = 3e-037
Identities = 18/36 (50%), Positives = 20/36 (55%)
Frame = -2 / +2
Query: 715 SLAFMMVELTTTDAAKTLSEKRA*W*RSGFSRFSLF 608
+LAF VELTTT A LSE +A* G F F
Sbjct: 659 TLAFNTVELTTTAVASILSENKA**YSFGXMSFCXF 766
>gb|CW789437.1|CW789437 SP__Ba0057N21.r SP__Ba Sorghum propinquum genomic clone SP__Ba0057N21
3', DNA sequence
Length = 714
Score = 150 bits (323), Expect(2) = 5e-063
Identities = 55/71 (77%), Positives = 67/71 (94%)
Frame = +3 / -2
Query: 945 SNLKYRNPKYLSMLNHLRFYLPQVYPKLNKILFLDDDIVVQRDLTGLWEVDLNGNVNGAV 1124
SNLKYRNPKYLS+LNHLRFYLP++YPKL+K++FLDDDIVV++DLT LW +++ G VNGAV
Sbjct: 326 SNLKYRNPKYLSILNHLRFYLPEIYPKLDKMVFLDDDIVVKKDLTALWSINMKGKVNGAV 147
Query: 1125 ETCGESFHRFD 1157
ETCGESFHR+D
Sbjct: 146 ETCGESFHRYD 114
Score = 112 bits (240), Expect(2) = 5e-063
Identities = 42/70 (60%), Positives = 52/70 (74%)
Frame = +3 / -2
Query: 711 KEPEKHVFHLVTDKLNFGAMNMWFLLNPPGDATIHVENVDDFKWLNSSYCPVLKQLESAA 890
+ P HVFH+VTDKLN+ M MWFL NPPG ATI V+++ +F WLN SY PVLKQL S +
Sbjct: 548 QHPSDHVFHIVTDKLNYAPMRMWFLSNPPGKATIEVQHIGEFTWLNDSYSPVLKQLGSPS 369
Query: 891 MKEYYFKADR 920
M +YYF +R
Sbjct: 368 MIDYYFGTNR 339
Score = 100 bits (213), Expect(3) = 6e-037
Identities = 46/69 (66%), Positives = 51/69 (73%)
Frame = -2 / +1
Query: 1150 R*KLSPHVSTAPFTFPLRSTSQSPVRSLWTTISSSRKRILFSLG*TCGR*NLR*LSMDKY 971
R KLSPHVSTAPFTFP Q VRS +TT+SSSRK IL S G* GR* R*L +D+Y
Sbjct: 121 RWKLSPHVSTAPFTFPFILIDQRAVRSFFTTMSSSRKTILSSFG*ISGR*KRR*LRIDRY 300
Query: 970 FGFRYFRLE 944
FGFRYF+ E
Sbjct: 301 FGFRYFKFE 327
Score = 63.4 bits (132), Expect(3) = 6e-037
Identities = 32/65 (49%), Positives = 37/65 (56%)
Frame = -2 / +1
Query: 934 ESVFGRSALK*YSFMAADSSCFRTGQ*EEFNHLKSSTFSTWIVASPGGFSKNHMFMAPKF 755
ES F R K* S M D SC TG * F+H+ S T IVA PGG +NH+ + F
Sbjct: 325 ESEFARFVPK**SIMDGDPSCLSTGL*LSFSHVNSPICCTSIVAFPGGLERNHILIGA*F 504
Query: 754 SLSVT 740
SLSVT
Sbjct: 505 SLSVT 519
Score = 30.9 bits (61), Expect(3) = 6e-037
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = -2 / +2
Query: 715 SLAFMMVELTTTDAAKTLSEKRA* 644
+LAF VELTTT A LSE +A*
Sbjct: 629 TLAFNTVELTTTAVASILSENKA* 700
>gb|CL179385.1|CL179385 104_388_10895272_116_31910_184 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10895272, DNA
sequence
Length = 681
Score = 111 bits (237), Expect(3) = 3e-055
Identities = 43/59 (72%), Positives = 50/59 (84%)
Frame = +3 / +3
Query: 609 NSENLENPDLYHYALFSDNVLAASVVVNSTIMNAKEPEKHVFHLVTDKLNFGAMNMWFL 785
+ E LE+ LYHYA+FSDNVLAASVVV ST+ NA EPEKHVFH+VTD+LNF AM MWF+
Sbjct: 498 DKEKLEDRSLYHYAIFSDNVLAASVVVRSTVTNANEPEKHVFHIVTDRLNFAAMKMWFI 674
Score = 104 bits (221), Expect(3) = 3e-055
Identities = 43/75 (57%), Positives = 58/75 (77%)
Frame = +3 / +3
Query: 354 SASDRTKAMGQVLSKARDLLYDCKEITQRLRAMLQSADEQVRSLKKQSTFLSQLAAKTIP 533
SA +R KAMG VLS ARD+LY E++++LRAMLQS + + ++KKQ++FL Q AAKT+P
Sbjct: 216 SALERAKAMGHVLSSARDVLYSSGEVSRKLRAMLQSTELNIDAVKKQNSFLVQHAAKTVP 395
Query: 534 NGIHCLSMRLTIDYY 578
+HCL M+LT DYY
Sbjct: 396 MPLHCLHMQLTTDYY 440
Score = 85.8 bits (181), Expect(2) = 7e-024
Identities = 40/57 (70%), Positives = 44/57 (77%)
Frame = -2 / -3
Query: 781 NHMFMAPKFSLSVTR*NTCFSGSLAFMMVELTTTDAAKTLSEKRA*W*RSGFSRFSL 611
NH+FMA K SLSVT NTCFSGSLAF+ V+LTTT+AA TLSE A*W* S FSL
Sbjct: 670 NHIFMAAKLSLSVTIWNTCFSGSLAFVTVDLTTTEAASTLSENIA*W*SDRSSSFSL 500
Score = 46.9 bits (96), Expect(2) = 7e-024
Identities = 30/74 (40%), Positives = 36/74 (48%)
Frame = -2 / -3
Query: 598 LFSGERR**SIVKRMERQWMPFGIVLAASWLRKVLCFFKLRTCSSAD*SIALKRWVISLQ 419
L + R+**S+V + RQ G V AA R CFF SS D +IA S +
Sbjct: 460 LVASSRK**SVVSCICRQCKGMGTVFAAC*TRNEFCFFTASIFSSVDCNIARNFLDTSPE 281
Query: 418 SYNRSLAFDKTWPI 377
Y SLA D T PI
Sbjct: 280 LYRTSLAEDSTCPI 239
Score = 40.9 bits (83), Expect(3) = 3e-055
Identities = 16/39 (41%), Positives = 28/39 (71%)
Frame = +3 / +1
Query: 231 RIYSVLAKSRDKLDLYQELLARLKESQRSLGEATADAEL 347
++Y+ +A S+ + D+Y L+ +KESQ S+G+A D+EL
Sbjct: 1 KLYATIALSQKEPDMYALLMKCIKESQTSIGDALIDSEL 117
>gb|BG357146.1|BG357146 OV2_10_D07.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 538
Score = 143 bits (306), Expect(2) = 1e-050
Identities = 56/114 (49%), Positives = 77/114 (67%)
Frame = +3 / +1
Query: 618 NLENPDLYHYALFSDNVLAASVVVNSTIMNAKEPEKHVFHLVTDKLNFGAMNMWFLLNPP 797
NL + LYH+ +FSDN+LA SVVVNST +N++ P+K VFHLVTD LN+ M WF +N
Sbjct: 112 NLRDNSLYHFCVFSDNILAVSVVVNSTAINSRHPDKVVFHLVTDDLNYAPMKAWFAMNDY 291
Query: 798 GDATIHVENVDDFKWLNSSYCPVLKQLESAAMKEYYFKADRPKTLSAGSSNLKY 959
T+ ++ V+DF WLN+SY PVLKQL++AA +++YF + N KY
Sbjct: 292 RGVTVDIQKVEDFTWLNASYVPVLKQLQNAATQKFYFSGSGNRGTPIKFRNPKY 453
Score = 79.4 bits (167), Expect(2) = 1e-050
Identities = 27/36 (75%), Positives = 35/36 (97%)
Frame = +3 / +1
Query: 951 LKYRNPKYLSMLNHLRFYLPQVYPKLNKILFLDDDI 1058
+K+RNPKYLSMLNHLRFY+P++YP+L K++FLDDDI
Sbjct: 430 IKFRNPKYLSMLNHLRFYIPEIYPELQKVVFLDDDI 537
>gb|CW170084.1|CW170084 104_580_11155017_116_36509_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11155017, DNA
sequence
Length = 644
Score = 117 bits (251), Expect(3) = 4e-048
Identities = 45/83 (54%), Positives = 68/83 (81%)
Frame = +3 / -3
Query: 465 DEQVRSLKKQSTFLSQLAAKTIPNGIHCLSMRLTIDYYLLSPEKRKFPNSENLENPDLYH 644
++Q+ S K+Q+ +L+Q+AAK++P G+H L++RLT +YY + + + FP + LE+P LYH
Sbjct: 639 EQQLESNKRQANYLAQVAAKSLPKGLHSLTLRLTNEYYFTNSKNKDFPYVQKLEDPKLYH 460
Query: 645 YALFSDNVLAASVVVNSTIMNAK 713
YALFSDNVLAA+VVVNST+++AK
Sbjct: 459 YALFSDNVLAAAVVVNSTLVHAK 391
Score = 63.4 bits (132), Expect(3) = 4e-048
Identities = 23/35 (65%), Positives = 28/35 (80%)
Frame = +3 / -1
Query: 711 KEPEKHVFHLVTDKLNFGAMNMWFLLNPPGDATIH 815
++PEKHVF +VTD+LN+ AM MWFL NP G A IH
Sbjct: 242 QKPEKHVFPIVTDRLNYAAMKMWFLANPLGKAAIH 138
Score = 55.6 bits (115), Expect(3) = 4e-048
Identities = 20/32 (62%), Positives = 26/32 (81%)
Frame = +3 / -2
Query: 816 VENVDDFKWLNSSYCPVLKQLESAAMKEYYFK 911
V+N+++F WLNSSY PVLKQLE+ M YYF+
Sbjct: 136 VQNIEEFTWLNSSYSPVLKQLETQFMINYYFR 41
>gb|BG102336.1|BG102336 RHIZ2_22_E09.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 516
Score = 183 bits (394), Expect = 5e-045
Identities = 75/85 (88%), Positives = 79/85 (92%)
Frame = -1 / -2
Query: 284 LLIEIKLVPRFGKNRIYSGHDHLISHQTDP*ICLFIFIFTSPDAVFSQHSRVNSF*TFDT 105
LLIEIKLVPRFGK RIYSGHDHLISHQT+P*ICL IFIFTSPD VFSQHSR+NSF* FDT
Sbjct: 515 LLIEIKLVPRFGKIRIYSGHDHLISHQTNP*ICLLIFIFTSPDTVFSQHSRINSF*AFDT 336
Query: 104 CILKFN*RFIILLXYFHFLPYSNSP 30
C+LKFN* FIILL YFHFLPY+NSP
Sbjct: 335 CVLKFN*CFIILLHYFHFLPYTNSP 261
Score = 182 bits (393), Expect(2) = 1e-045
Identities = 80/84 (95%), Positives = 81/84 (96%)
Frame = +3 / +3
Query: 33 RVAVRKKMEVXQQDDEALVKLENAGIERSKAVDSAVLGKYSIWRRENENEKADSRVRLMR 212
R+ VRKKMEV QQDDEALVKLENAGIERSKAVDSAVLGKYSIWRRENENEKADSRVRLMR
Sbjct: 264 RIGVRKKMEVMQQDDEALVKLENAGIERSKAVDSAVLGKYSIWRRENENEKADSRVRLMR 443
Query: 213 DQMIMARIYSVLAKSRDKLDLYQE 284
DQMIMARIYS LAKSRDKLDLYQE
Sbjct: 444 DQMIMARIYSDLAKSRDKLDLYQE 515
Score = 148 bits (318), Expect = 2e-034
Identities = 68/85 (80%), Positives = 72/85 (84%)
Frame = +2 / +2
Query: 29 KESCCKEENGSXAAG**SVS*T*ECRYRTFKSC*LCCAGKIQHLET*XXXXXGRFKGPFD 208
+E+ CKEENGS AAG**S+S*T*E RYRT KSC* CCAGKIQ+LET* GRFKG D
Sbjct: 260 RENWCKEENGSNAAG**SIS*T*ERRYRTLKSC*FCCAGKIQYLET*K*K*EGRFKGSSD 439
Query: 209 ARSNDHGQNIFCSCQIEGQA*SLSG 283
ARSNDHGQNIF SCQIEGQA*SLSG
Sbjct: 440 ARSNDHGQNIF*SCQIEGQA*SLSG 514
Score = 146 bits (314), Expect = 5e-034
Identities = 65/71 (91%), Positives = 68/71 (95%)
Frame = -2 / -3
Query: 244 TEYILAMII*SRIKRTLESAFSFSFSRLQMLYFPSTAESTAFERSIPAFSSLTNASSSCC 65
+EYILAMII*SRI+RTLESAFSFSFSRLQ+LYFPSTAESTAFERSIPAFSSLTNASSSCC
Sbjct: 475 SEYILAMII*SRIRRTLESAFSFSFSRLQILYFPSTAESTAFERSIPAFSSLTNASSSCC 296
Query: 64 XTSIFFLTATL 32
TSIFFLT L
Sbjct: 295 ITSIFFLTPIL 263
Score = 145 bits (312), Expect(2) = 2e-036
Identities = 57/65 (87%), Positives = 61/65 (93%)
Frame = -3 / -1
Query: 285 APDRDQACPSIWQEQNIFWP*SFDLASNGPLNLPFHFHFHVSRCCIFPAQQSQQLLNVRY 106
APDRDQACPSIWQ+QNIFWP*SFDLAS+ PLNLP HFHFHVSR CIFPAQQ+QQLL+VRY
Sbjct: 516 APDRDQACPSIWQDQNIFWP*SFDLASDEPLNLPSHFHFHVSRYCIFPAQQNQQLLSVRY 337
Query: 105 LHSQV 91
L SQV
Sbjct: 336 LRSQV 322
Score = 138 bits (297), Expect(2) = 2e-032
Identities = 60/67 (89%), Positives = 61/67 (91%)
Frame = +1 / +1
Query: 85 *LNLRMQVSNVQKLLTLLCWENTASGDVKMKMKRQIQGSV*CEIK*SWPEYILFLPNRGT 264
*LNLR QVSN QKLL LLCWENT SGDVKMKM+RQIQG V*CEIK*SWPEYIL LPNRGT
Sbjct: 316 *LNLRTQVSNAQKLLILLCWENTVSGDVKMKMRRQIQGFV*CEIK*SWPEYILILPNRGT 495
Query: 265 SLISIRS 285
SLISIRS
Sbjct: 496 SLISIRS 516
Score = 29.0 bits (57), Expect(2) = 2e-036
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2 / -3
Query: 82 ASSSCCXTSIFFLTATLLNFMCVISFD 2
+SS C + F LNF+CVIS D
Sbjct: 310 SSSCCITSIFFLTPILPLNFLCVISSD 230
Score = 22.6 bits (43), Expect(2) = 1e-045
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +2 / +2
Query: 2 IKGNNTHEIK 31
I+GNNT EIK
Sbjct: 230 IRGNNTQEIK 259
Score = 22.1 bits (42), Expect(2) = 2e-032
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3 / +3
Query: 3 SKEITHMKLRRVAVRKKMEVXQQDDE 80
S+EITH KLR +K Q D+
Sbjct: 231 SEEITHRKLRGRIGVRKKMEVMQQDD 308
>gb|CW068742.1|CW068742 104_317_10525284_1_30096 Sorghum methylation filtered library (LibID:
104) Sorghum bicolor genomic clone 10525284, DNA sequence
Length = 432
Score = 133 bits (284), Expect(2) = 2e-041
Identities = 49/68 (72%), Positives = 63/68 (92%)
Frame = +3 / -2
Query: 951 LKYRNPKYLSMLNHLRFYLPQVYPKLNKILFLDDDIVVQRDLTGLWEVDLNGNVNGAVET 1130
+K+RNPKYLSMLNHLRFY+P++YP+L K++FLDDDIVVQ+DL+ L+ ++LNGNV GAVET
Sbjct: 296 IKFRNPKYLSMLNHLRFYIPEIYPELQKVVFLDDDIVVQKDLSELFTINLNGNVMGAVET 117
Query: 1131 CGESFHRF 1154
C E+FHRF
Sbjct: 116 CMETFHRF 93
Score = 58.3 bits (121), Expect(2) = 2e-041
Identities = 22/51 (43%), Positives = 33/51 (64%)
Frame = +3 / -2
Query: 807 TIHVENVDDFKWLNSSYCPVLKQLESAAMKEYYFKADRPKTLSAGSSNLKY 959
T+ ++ V+DF WLN+SY PVLKQL++AA +++YF + N KY
Sbjct: 425 TVDIQKVEDFTWLNASYVPVLKQLQNAATQKFYFSGSGNRGTPIKFRNPKY 273
>gb|AC169370.3| Sorghum bicolor clone SB_BBc0011I20, WORKING DRAFT SEQUENCE, 9
unordered pieces
Length = 143922
Score = 100 bits (212), Expect(4) = 3e-041
Identities = 40/120 (33%), Positives = 67/120 (55%)
Frame = +3 / -2
Query: 354 SASDRTKAMGQVLSKARDLLYDCKEITQRLRAMLQSADEQVRSLKKQSTFLSQLAAKTIP 533
S + + + M + +A+ C + ++LR +L +++ +QS FL L +T P
Sbjct: 67619 SFAKKLEKMEHTIERAKSCEVGCSNVERKLRQLLDITEDEAYFHTRQSAFLYHLGVQTTP 67440
Query: 534 NGIHCLSMRLTIDYYLLSPEKRKFPNSENLENPDLYHYALFSDNVLAASVVVNSTIMNAK 713
HCL+MRLT++Y+ N + LE+P +HY +FS NVLAAS +NS +MN++
Sbjct: 67439 KTHHCLNMRLTVEYFKSRSSHMDQLNEQELESPTFHHYVIFSKNVLAASTTINSAVMNSQ 67260
Score = 77.1 bits (162), Expect(4) = 3e-041
Identities = 26/55 (47%), Positives = 40/55 (72%)
Frame = +3 / -3
Query: 969 KYLSMLNHLRFYLPQVYPKLNKILFLDDDIVVQRDLTGLWEVDLNGNVNGAVETC 1133
+Y+S+ H F LP + P LN+++ LDDD++VQ+DL+ LW +D+ G V GAV+ C
Sbjct: 66940 EYISIFGHSHFLLPDLLPSLNRVVVLDDDLIVQKDLSSLWNLDMGGKVIGAVQFC 66776
Score = 46.9 bits (96), Expect(4) = 3e-041
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +3 / -3
Query: 729 VFHLVTDKLNFGAMNMWFLLNPPGDATIHVENVDD 833
VFHL TD NF AM WF N +AT+HV N++D
Sbjct: 67162 VFHLFTDAQNFYAMKHWFDRNSYLEATVHVTNIED 67058
Score = 31.3 bits (62), Expect(4) = 3e-041
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +3 / -3
Query: 144 GKYSIWRRENENEKADSRVRLMRDQMIMARIY 239
G Y +W E+ D+ V+ ++DQ+ +AR +
Sbjct: 68107 GSYCLWSTEHREVMKDAIVKRLKDQLFLARAH 68012
>gb|CW481038.1|CW481038 fsbb001f240g12k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f240g12, DNA
sequence
Length = 795
Score = 100 bits (213), Expect(2) = 1e-039
Identities = 39/65 (60%), Positives = 45/65 (69%)
Frame = +3 / -3
Query: 717 PEKHVFHLVTDKLNFGAMNMWFLLNPPGDATIHVENVDDFKWLNSSYCPVLKQLESAAMK 896
P +HVFH VTDK N AM MWFL NP G I V+N+++F WLNS Y PVLKQL S M
Sbjct: 202 PTRHVFHTVTDKHNCAAMRMWFLANPIGKIAIQVQNIEEFTWLNSRYSPVLKQLASHFMM 23
Query: 897 EYYFK 911
+YFK
Sbjct: 22 NFYFK 8
Score = 84.9 bits (179), Expect(2) = 1e-039
Identities = 34/58 (58%), Positives = 45/58 (77%)
Frame = +3 / -1
Query: 540 IHCLSMRLTIDYYLLSPEKRKFPNSENLENPDLYHYALFSDNVLAASVVVNSTIMNAK 713
++CL++RLT +YYL S K+ FPN E E+ L HYALFS NVL A+VVV+ST++NAK
Sbjct: 483 LYCLALRLTNEYYLSSSHKKHFPNEEKFEDSKLQHYALFSHNVLEAAVVVSSTLINAK 310
>gb|CW198021.1|CW198021 104_622_11181988_148_36827_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11181988, DNA
sequence
Length = 704
Score = 138 bits (295), Expect(2) = 2e-037
Identities = 57/118 (48%), Positives = 85/118 (72%)
Frame = +3 / +3
Query: 348 PKSASDRTKAMGQVLSKARDLLYDCKEITQRLRAMLQSADEQVRSLKKQSTFLSQLAAKT 527
P S + KAM LSKA+ + C ++T +LRAM+ +++E VR+ + +S+FL Q+A +T
Sbjct: 345 PCSVLQKMKAMELTLSKAQRIYPRCCQMTAKLRAMVHNSEELVRAHQSESSFLEQVAVRT 524
Query: 528 IPNGIHCLSMRLTIDYYLLSPEKRKFPNSENLENPDLYHYALFSDNVLAASVVVNSTI 701
+ G HCL+M+LT +Y+ L P KR+FP E+++ YHYA+FSDNVLA++VVVNSTI
Sbjct: 525 LSKGHHCLAMQLTAEYFSLDPSKREFPKRESIQLDGYYHYAIFSDNVLASAVVVNSTI 698
Score = 40.5 bits (82), Expect(2) = 2e-037
Identities = 15/52 (28%), Positives = 31/52 (59%)
Frame = +3 / +1
Query: 195 RVRLMRDQMIMARIYSVLAKSRDKLDLYQELLARLKESQRSLGEATADAELP 350
++ +M+DQ+IMA+ Y A + + +EL R+KE +R++ ++ +P
Sbjct: 85 KIWMMQDQLIMAKAYLHFASPQGSVHFVRELRLRIKEIERAISHSSGGTRVP 240
>gb|CW388065.1|CW388065 fsbb001f072k16k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f072k16, DNA
sequence
Length = 722
Score = 105 bits (224), Expect(2) = 7e-036
Identities = 39/61 (63%), Positives = 49/61 (80%)
Frame = +3 / -2
Query: 960 RNPKYLSMLNHLRFYLPQVYPKLNKILFLDDDIVVQRDLTGLWEVDLNGNVNGAVETCGE 1139
R+P+Y S LNHLRFYLP+V+P L K++ LD D+VVQ DLTGLW++D+ G V GAVETC
Sbjct: 310 RDPRYTSALNHLRFYLPEVFPSLGKVVLLDHDVVVQNDLTGLWDLDMKGKVIGAVETCTS 131
Query: 1140 S 1142
S
Sbjct: 130 S 128
Score = 67.5 bits (141), Expect(2) = 7e-036
Identities = 24/49 (48%), Positives = 34/49 (69%)
Frame = +3 / -2
Query: 711 KEPEKHVFHLVTDKLNFGAMNMWFLLNPPGDATIHVENVDDFKWLNSSY 857
++P + + H+VTD LN+ AM MWFL NPP A I V+++DD KWL +
Sbjct: 484 QDPGRIILHIVTDALNYPAMMMWFLRNPPTPAAIQVKSLDDLKWLPGDF 338
>gb|CN140420.1|CN140420 OX1_36_B10.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_36_B10_A002 3', mRNA sequence
Length = 836
Score = 149 bits (320), Expect = 8e-035
Identities = 55/71 (77%), Positives = 68/71 (95%)
Frame = +3 / +3
Query: 942 SSNLKYRNPKYLSMLNHLRFYLPQVYPKLNKILFLDDDIVVQRDLTGLWEVDLNGNVNGA 1121
+SN+K+RNPKYLSMLNHLRFYLP++YPKL++ILFLDDD+VVQRDLTGLW++D++G VNGA
Sbjct: 18 ASNMKFRNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQRDLTGLWKIDMDGKVNGA 197
Query: 1122 VETCGESFHRF 1154
VETC SFHR+
Sbjct: 198 VETCFGSFHRY 230
>gb|AW745045.1|AW745045 LG1_386_C01.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 534
Score = 122 bits (262), Expect(2) = 1e-034
Identities = 48/86 (55%), Positives = 64/86 (74%)
Frame = +3 / +1
Query: 609 NSENLENPDLYHYALFSDNVLAASVVVNSTIMNAKEPEKHVFHLVTDKLNFGAMNMWFLL 788
NS L + +LYH+ +FSDNVLA SVVVNST+ NA P++ VFH+VTD+++FGAM+ WFLL
Sbjct: 277 NSTRLVDNNLYHFCIFSDNVLATSVVVNSTVSNANHPQQLVFHVVTDRIHFGAMSTWFLL 456
Query: 789 NPPGDATIHVENVDDFKWLNSSYCPV 866
N T+ V +D+F WLNSS P+
Sbjct: 457 NDFKGCTVEVRCIDEFSWLNSSSSPL 534
Score = 46.0 bits (94), Expect(2) = 1e-034
Identities = 19/66 (28%), Positives = 38/66 (57%)
Frame = +3 / +1
Query: 378 MGQVLSKARDLLYDCKEITQRLRAMLQSADEQVRSLKKQSTFLSQLAAKTIPNGIHCLSM 557
+ +++ KA+D YD L+ + +E+ ++ QS QLAA++ P +HCL++
Sbjct: 37 LARLIYKAQDSHYDISTTIVTLKNHALALEERAKAAIVQSAEFGQLAAESFPKNLHCLTV 216
Query: 558 RLTIDY 575
+LT ++
Sbjct: 217 KLTEEW 234
>gb|BM326233.1|BM326233 PIC1_72_D10.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 616
Score = 148 bits (317), Expect = 2e-034
Identities = 66/155 (42%), Positives = 101/155 (65%)
Frame = +3 / +1
Query: 30 RRVAVRKKMEVXQQDDEALVKLENAGIERSKAVDSAVLGKYSIWRRENENEKADSRVRLM 209
RR R+ E+ Q D + +++ NA I S ++ V G Y+IWR+E DS +RLM
Sbjct: 151 RRRKERRVQELLQMDKKVELEMRNAAINSSMNFNNKVRGSYNIWRQEFRFINTDSTLRLM 330
Query: 210 RDQMIMARIYSVLAKSRDKLDLYQELLARLKESQRSLGEATADAELPKSASDRTKAMGQV 389
+DQ+IMA++Y+ +A S+ + D+Y L+ + ESQ S+G+A D+EL SA +R KAMG V
Sbjct: 331 KDQIIMAKLYATIALSQKEPDMYALLMKCIXESQTSIGDALIDSELDSSALERAKAMGHV 510
Query: 390 LSKARDLLYDCKEITQRLRAMLQSADEQVRSLKKQ 494
LS ARD+LY E+++ LRAMLQS + + ++K +
Sbjct: 511 LSSARDVLYSSGEVSRXLRAMLQSTELNIDAVKNR 615
>gb|BI141606.1|BI141606 IP1_54_E11.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 204
Score = 147 bits (316), Expect = 3e-034
Identities = 62/65 (95%), Positives = 64/65 (98%)
Frame = +3 / +1
Query: 411 LYDCKEITQRLRAMLQSADEQVRSLKKQSTFLSQLAAKTIPNGIHCLSMRLTIDYYLLSP 590
LYDC+EIT+RLRAMLQSADEQVRSLKK STFLSQLAAKTIPNGIHCLSMRLTIDYYLLSP
Sbjct: 10 LYDCQEITERLRAMLQSADEQVRSLKKHSTFLSQLAAKTIPNGIHCLSMRLTIDYYLLSP 189
Query: 591 EKRKF 605
EKRKF
Sbjct: 190 EKRKF 204
Score = 143 bits (307), Expect = 5e-033
Identities = 58/65 (89%), Positives = 63/65 (96%)
Frame = -1 / -1
Query: 605 ELSFLWREKIIINR*AHGKTMDAIWDCLSC*LAKEGALLLQAPDLLIC*LKHCSQTLGNF 426
ELSFLWR+K+IIN *AHGKTMDAIWDCLSC LAK+GA+LLQAPDLLIC*LKHCSQTLGNF
Sbjct: 204 ELSFLWRQKVIINC*AHGKTMDAIWDCLSCQLAKKGAMLLQAPDLLIC*LKHCSQTLGNF 25
Query: 425 LAIVQ 411
LAI+Q
Sbjct: 24 LAIIQ 10
Score = 141 bits (303), Expect = 2e-032
Identities = 62/65 (95%), Positives = 63/65 (96%)
Frame = -2 / -2
Query: 604 NFLFSGERR**SIVKRMERQWMPFGIVLAASWLRKVLCFFKLRTCSSAD*SIALKRWVIS 425
NFLFSG+RR**SIVKRMERQWMPFGIVLAASWLRKVLCFFKLRTCSSAD*SIALKR VIS
Sbjct: 203 NFLFSGDRR**SIVKRMERQWMPFGIVLAASWLRKVLCFFKLRTCSSAD*SIALKRSVIS 24
Query: 424 LQSYN 410
QSYN
Sbjct: 23 WQSYN 9
>gb|CW198020.1|CW198020 104_622_11181988_116_36828_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11181988, DNA
sequence
Length = 737
Score = 139 bits (298), Expect = 9e-032
Identities = 58/122 (47%), Positives = 87/122 (71%)
Frame = +3 / -2
Query: 348 PKSASDRTKAMGQVLSKARDLLYDCKEITQRLRAMLQSADEQVRSLKKQSTFLSQLAAKT 527
P S + KAM LSKA+ + C ++T +LRAM+ +++E VR+ + +S+FL Q+A +T
Sbjct: 538 PCSVLQKMKAMELTLSKAQRIYPRCCQMTAKLRAMVHNSEELVRAHQSESSFLEQVAVRT 359
Query: 528 IPNGIHCLSMRLTIDYYLLSPEKRKFPNSENLENPDLYHYALFSDNVLAASVVVNSTIMN 707
+ G HCL+M+LT +Y+ L P KR+FP E+++ YHYA+FSDNVLA++VVVNSTI
Sbjct: 358 LSKGHHCLAMQLTAEYFSLDPSKREFPKRESIQLDGYYHYAIFSDNVLASAVVVNSTIAA 179
Query: 708 AK 713
+K
Sbjct: 178 SK 173
>gb|CW229988.1|CW229988 104_671_11207609_148_37265_071 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11207609, DNA
sequence
Length = 621
Score = 90.9 bits (192), Expect(2) = 1e-027
Identities = 31/60 (51%), Positives = 47/60 (78%)
Frame = +3 / -3
Query: 975 LSMLNHLRFYLPQVYPKLNKILFLDDDIVVQRDLTGLWEVDLNGNVNGAVETCGESFHRF 1154
+++L++LRFYLP+++P L +++ L+DD+VVQRDL GLW VD+ NVN A+ TC F R+
Sbjct: 379 VALLDYLRFYLPEMFPALRRVVLLEDDVVVQRDLAGLWRVDMGANVNAALHTCFGGFRRY 200
Score = 57.4 bits (119), Expect(2) = 1e-027
Identities = 24/46 (52%), Positives = 28/46 (60%)
Frame = +3 / -3
Query: 660 DNVLAASVVVNSTIMNAKEPEKHVFHLVTDKLNFGAMNMWFLLNPP 797
DNVLA SVVV S A EP +HVFH+VT + A +WF PP
Sbjct: 619 DNVLAVSVVVASAARAAAEPSRHVFHVVTAPMYLPAFRVWFARRPP 482
>gb|BI211790.1|BI211790 IP1_61_B03.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 634
Score = 102 bits (217), Expect(2) = 7e-027
Identities = 44/126 (34%), Positives = 71/126 (56%)
Frame = +3 / +1
Query: 201 RLMRDQMIMARIYSVLAKSRDKLDLYQELLARLKESQRSLGEATADAELPKSASDRTKAM 380
RL + Y +AK + + L QE+ +++ +R L +T DA+LP S R K M
Sbjct: 127 RLKDQLFVARSYYPSIAKLQGQEALTQEMKQNIQDHERILSVSTVDADLPSFISKRMKQM 306
Query: 381 GQVLSKARDLLYDCKEITQRLRAMLQSADEQVRSLKKQSTFLSQLAAKTIPNGIHCLSMR 560
+ + +A+ DCK + ++LR +L +++ KQS FL L A+T+P HCLSMR
Sbjct: 307 ERTIVRAKSCTVDCKNVDRKLRQILDMTEDEAHFHMKQSAFLYNLGAQTLPKSHHCLSMR 486
Query: 561 LTIDYY 578
LT++Y+
Sbjct: 487 LTLEYF 504
Score = 40.5 bits (82), Expect(2) = 7e-027
Identities = 15/28 (53%), Positives = 22/28 (78%)
Frame = +3 / +1
Query: 627 NPDLYHYALFSDNVLAASVVVNSTIMNA 710
+P+ HY + S NVLAASVV+NST+ ++
Sbjct: 550 SPEYRHYVILSRNVLAASVVINSTVSSS 633
>gb|CW158441.1|CW158441 104_564_11148823_148_36396_028 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11148823, DNA
sequence
Length = 643
Score = 90.9 bits (192), Expect(2) = 7e-027
Identities = 31/60 (51%), Positives = 47/60 (78%)
Frame = +3 / -3
Query: 975 LSMLNHLRFYLPQVYPKLNKILFLDDDIVVQRDLTGLWEVDLNGNVNGAVETCGESFHRF 1154
+++L++LRFYLP+++P L +++ L+DD+VVQRDL GLW VD+ NVN A+ TC F R+
Sbjct: 404 VALLDYLRFYLPEMFPALRRVVLLEDDVVVQRDLAGLWRVDMGANVNAALHTCFGGFRRY 225
Score = 54.7 bits (113), Expect(2) = 7e-027
Identities = 23/45 (51%), Positives = 27/45 (60%)
Frame = +3 / -3
Query: 663 NVLAASVVVNSTIMNAKEPEKHVFHLVTDKLNFGAMNMWFLLNPP 797
NVLA SVVV S A EP +HVFH+VT + A +WF PP
Sbjct: 641 NVLAVSVVVASAARAAAEPSRHVFHVVTAPMYLPAFRVWFARRPP 507
>gb|BZ628081.1|BZ628081 ih57h02.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ih57h02 5', DNA sequence
Length = 660
Score = 76.2 bits (160), Expect(3) = 1e-025
Identities = 30/75 (40%), Positives = 46/75 (61%)
Frame = +3 / +3
Query: 354 SASDRTKAMGQVLSKARDLLYDCKEITQRLRAMLQSADEQVRSLKKQSTFLSQLAAKTIP 533
S S R K M + + +A+ DCK + ++LR +L +++ KQS FL L A+T+P
Sbjct: 15 SISKRMKQMERTIVRAKSCTVDCKNVDRKLRQILDMTEDEAHFHMKQSAFLYNLGAQTLP 194
Query: 534 NGIHCLSMRLTIDYY 578
HCLSMRLT++Y+
Sbjct: 195 KSHHCLSMRLTLEYF 239
Score = 45.1 bits (92), Expect(3) = 1e-025
Identities = 17/29 (58%), Positives = 23/29 (79%)
Frame = +3 / +3
Query: 627 NPDLYHYALFSDNVLAASVVVNSTIMNAK 713
+P+ HY + S NVLAASVV+NST+ N+K
Sbjct: 285 SPEYRHYVILSRNVLAASVVINSTVSNSK 371
Score = 35.0 bits (70), Expect(3) = 1e-025
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3 / +3
Query: 711 KEPEKHVFHLVTDKLNFGAMNMWFLLNPPGDATIHVENVD 830
+EP FH++TD N+ AM WF N +A V N +
Sbjct: 453 QEPGHLAFHILTDAQNYYAMKHWFARNSYXNAATPVINYE 572
>gb|CW234103.1|CW234103 104_687_11213801_148_37382_069 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11213801, DNA
sequence
Length = 643
Score = 89.0 bits (188), Expect(2) = 2e-025
Identities = 34/55 (61%), Positives = 43/55 (78%)
Frame = +3 / -1
Query: 606 PNSENLENPDLYHYALFSDNVLAASVVVNSTIMNAKEPEKHVFHLVTDKLNFGAM 770
P LE+P L+HYA+FSDNVLAAS VV S + N+ +P KHVFH+VTD++N GAM
Sbjct: 169 PPPRALEDPALFHYAIFSDNVLAASCVVRSAVANSNDPSKHVFHVVTDRMNLGAM 5
Score = 49.2 bits (101), Expect(2) = 2e-025
Identities = 21/54 (38%), Positives = 35/54 (64%)
Frame = +3 / -1
Query: 411 LYDCKEITQRLRAMLQSADEQVRSLKKQSTFLSQLAAKTIPNGIHCLSMRLTID 572
L+D + QRL+ + + +E + KK+ F S +AAK+IP +HCL++RLT +
Sbjct: 367 LFDPQLKIQRLKDTIFAQNELLARAKKRGAFASLIAAKSIPKPLHCLAVRLTAE 206
>gb|CW262247.1|CW262247 104_729_11229952_148_35204_052 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11229952, DNA
sequence
Length = 459
Score = 86.8 bits (183), Expect(2) = 5e-022
Identities = 34/61 (55%), Positives = 45/61 (73%)
Frame = +3 / -1
Query: 606 PNSENLENPDLYHYALFSDNVLAASVVVNSTIMNAKEPEKHVFHLVTDKLNFGAMNMWFL 785
P LE+P L+ YA+FSDNVLAAS VV S + N+ +P KHVFH+VTD++N GAM + +
Sbjct: 267 PPPRALEDPALFQYAMFSDNVLAASCVVRSAVANSNDPSKHVFHVVTDRMNLGAMQVCCI 88
Query: 786 L 788
L
Sbjct: 87 L 85
Score = 39.6 bits (80), Expect(2) = 5e-022
Identities = 17/46 (36%), Positives = 29/46 (63%)
Frame = +3 / -1
Query: 435 QRLRAMLQSADEQVRSLKKQSTFLSQLAAKTIPNGIHCLSMRLTID 572
QRL+ + + +E + KK+ F S +AAK+I + CL++RLT +
Sbjct: 441 QRLKDTIFAQNELLARAKKRGAFASLIAAKSIRKPLQCLAVRLTAE 304
>gb|BF588088.1|BF588088 FM1_37_E11.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 578
Score = 74.8 bits (157), Expect(2) = 3e-021
Identities = 29/47 (61%), Positives = 36/47 (76%)
Frame = +3 / +2
Query: 606 PNSENLENPDLYHYALFSDNVLAASVVVNSTIMNAKEPEKHVFHLVT 746
P LE+P L+HYA+FSDNVLAAS VV S + N+ +P KHVFH+VT
Sbjct: 437 PPPRALEDPALFHYAIFSDNVLAASCVVRSAVANSNDPSKHVFHVVT 577
Score = 49.2 bits (101), Expect(2) = 3e-021
Identities = 21/54 (38%), Positives = 35/54 (64%)
Frame = +3 / +2
Query: 411 LYDCKEITQRLRAMLQSADEQVRSLKKQSTFLSQLAAKTIPNGIHCLSMRLTID 572
L+D + QRL+ + + +E + KK+ F S +AAK+IP +HCL++RLT +
Sbjct: 239 LFDPQLKIQRLKDTIFAQNELLARAKKRGAFASLIAAKSIPKPLHCLAVRLTAE 400
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,378,195,885
Number of Sequences: 832831
Number of extensions: 18919184
Number of successful extensions: 75493
Number of sequences better than 1.0e-020: 39
length of database: 163,786,556
effective HSP length: 55
effective length of database: 117,980,851
effective search space used: 40939355297
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)