TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3185308.2.1
(1019 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG412450.1|BG412450 OV2_34_C12.g1_A002 Ovary 2 (OV2) Sor... 434 e-121
gb|BG412749.1|BG412749 OV2_34_C12.b1_A002 Ovary 2 (OV2) Sor... 293 1e-093
gb|CL195140.1|CL195140 104_420_10942159_114_32302_028 Sorgh... 243 3e-063
gb|CW136107.1|CW136107 104_521_11118204_116_34845_048 Sorgh... 241 1e-062
gb|CN136232.1|CN136232 OX1_41_D05.g1_A002 Oxidatively-stres... 100 2e-050
gb|CF430353.1|CF430353 PH1_27_A08.g1_A002 Phosphorous-defic... 100 9e-045
gb|CX607081.1|CX607081 ANR1_6_C12.g1_A002 Anaerobic roots S... 100 3e-039
gb|CW221659.1|CW221659 104_656_11198028_148_37170_034 Sorgh... 161 2e-038
gb|CL171843.1|CL171843 104_374_10889716_116_31775_004 Sorgh... 160 3e-038
gb|BI140900.1|BI140900 IP1_40_E08.b1_A002 Immature pannicle... 96 4e-038
gb|CF429993.1|CF429993 PH1_25_G07.g1_A002 Phosphorous-defic... 96 5e-038
gb|BG049384.1|BG049384 OV1_19_C06.g1_A002 Ovary 1 (OV1) Sor... 159 6e-038
gb|DN551840.1|DN551840 pSPR-RT-A-H2_G06_S131 pSPR Sorghum p... 98 1e-037
gb|CW408701.1|CW408701 fsbb001f102l07k0 Sorghum methylation... 84 2e-036
gb|CN136158.1|CN136158 OX1_41_D05.b1_A002 Oxidatively-stres... 97 6e-036
gb|CD231880.1|CD231880 SS1_30_D11.g1_A012 Salt-stressed see... 98 2e-034
gb|CW471322.1|CW471322 fsbb001f225c11f0 Sorghum methylation... 148 2e-034
gb|CN124528.1|CN124528 RHOH1_5_H07.b1_A002 Acid- and alkali... 82 7e-034
gb|CW083023.1|CW083023 104_425_10944087_114_32352_060 Sorgh... 86 8e-034
gb|CW083024.1|CW083024 104_425_10944087_114_32388_060 Sorgh... 86 8e-034
gb|CW210014.1|CW210014 104_640_11189567_148_36998_092 Sorgh... 84 3e-033
gb|CW159464.1|CW159464 104_565_11149372_116_36410_006 Sorgh... 89 5e-033
gb|CW214676.1|CW214676 104_646_11194139_148_37052_036 Sorgh... 82 3e-032
gb|CW230206.1|CW230206 104_671_11207725_116_37267_049 Sorgh... 140 3e-032
gb|CX611078.1|CX611078 ANR1_22_B08.g1_A002 Anaerobic roots ... 100 3e-032
gb|CW409489.1|CW409489 fsbb001f103n01f0 Sorghum methylation... 87 3e-032
gb|CW416746.1|CW416746 fsbb001f117h02f0 Sorghum methylation... 87 3e-032
gb|CD204043.1|CD204043 HS1_3_A10.g1_A012 Heat-shocked seedl... 85 3e-031
gb|CN127175.1|CN127175 RHOH1_21_B02.g3_A002 Acid- and alkal... 87 4e-031
gb|CW079162.1|CW079162 104_398_10899280_114_32367_050 Sorgh... 136 5e-031
gb|CW126910.1|CW126910 104_507_11113147_148_34730_068 Sorgh... 136 5e-031
gb|CX607022.1|CX607022 ANR1_6_F04.b1_A002 Anaerobic roots S... 84 2e-030
gb|CN146258.1|CN146258 WOUND1_39_D07.b1_A002 Wounded leaves... 84 2e-030
gb|CN127089.1|CN127089 RHOH1_21_B02.b1_A002 Acid- and alkal... 87 5e-030
gb|CN139792.1|CN139792 OX1_24_D09.b1_A002 Oxidatively-stres... 131 2e-029
gb|CW246309.1|CW246309 104_707_11221289_116_35084_077 Sorgh... 100 1e-028
gb|CW306553.1|CW306553 104_792_11466904_148_35716_060 Sorgh... 89 3e-028
gb|CL177978.1|CL177978 104_385_10894229_116_31914_293 Sorgh... 125 1e-027
gb|CW325048.1|CW325048 104_819_11477484_116_35915_034 Sorgh... 125 1e-027
gb|CW426483.1|CW426483 fsbb001f137o10k0 Sorghum methylation... 125 1e-027
gb|CW372792.1|CW372792 fsbb001f048n17k0 Sorghum methylation... 89 4e-027
gb|CN139871.1|CN139871 OX1_24_D09.g1_A002 Oxidatively-stres... 76 5e-027
gb|CF429238.1|CF429238 PH1_20_C06.g1_A002 Phosphorous-defic... 82 2e-026
gb|CW204094.1|CW204094 104_632_11186356_148_36919_016 Sorgh... 84 3e-026
gb|CX607108.1|CX607108 ANR1_6_F04.g1_A002 Anaerobic roots S... 84 4e-026
gb|CW174639.1|CW174639 104_586_11157513_148_36559_033 Sorgh... 86 4e-026
gb|CW126001.1|CW126001 104_506_11112648_148_34725_088 Sorgh... 83 4e-026
gb|CN142714.1|CN142714 WOUND1_11_F01.g1_A002 Wounded leaves... 80 2e-025
gb|CW448128.1|CW448128 fsbb001f181j14k0 Sorghum methylation... 91 3e-025
gb|BI075831.1|BI075831 IP1_21_G05.b1_A002 Immature pannicle... 78 4e-025
gb|CW348698.1|CW348698 fsbb001f009c21k0 Sorghum methylation... 73 6e-025
gb|CN144206.1|CN144206 WOUND1_20_G04.g1_A002 Wounded leaves... 66 6e-025
gb|CX616057.1|CX616057 GABR1_25_C11.g1_A002 GA- or brassino... 87 1e-024
gb|CN137045.1|CN137045 OX1_54_H01.g1_A002 Oxidatively-stres... 85 2e-024
gb|CW204510.1|CW204510 104_632_11186581_116_37060_055 Sorgh... 84 8e-024
gb|CF429142.1|CF429142 PH1_20_C06.b1_A002 Phosphorous-defic... 75 1e-023
gb|CW487002.1|CW487002 fsbb001f252j13f0 Sorghum methylation... 89 1e-023
gb|CW318661.1|CW318661 104_811_11474070_148_35883_031 Sorgh... 73 2e-023
gb|CW143277.1|CW143277 104_535_11137329_148_34958_047 Sorgh... 73 2e-023
gb|CL172101.1|CL172101 104_374_10889911_148_31774_199 Sorgh... 73 3e-023
gb|CW231485.1|CW231485 104_680_11211147_116_37343_004 Sorgh... 77 4e-023
gb|CW392760.1|CW392760 fsbb001f079i10f0 Sorghum methylation... 52 6e-023
gb|CX620549.1|CX620549 GABR1_52_C02.g1_A002 GA- or brassino... 56 1e-022
gb|CW433351.1|CW433351 fsbb001f148i13f0 Sorghum methylation... 70 2e-022
gb|CN141202.1|CN141202 OX1_50_A06.b1_A002 Oxidatively-stres... 107 2e-022
gb|BG556631.1|BG556631 EM1_37_F06.b1_A002 Embryo 1 (EM1) So... 54 3e-022
gb|CW348697.1|CW348697 fsbb001f009c21f0 Sorghum methylation... 73 3e-022
gb|CW075930.1|CW075930 104_363_10809810_114_31800_258 Sorgh... 68 3e-022
gb|CW038341.1|CW038341 104_270_10504868_114_30385 Sorghum m... 68 3e-022
gb|CW122718.1|CW122718 104_501_11110823_148_34673_084 Sorgh... 69 4e-022
gb|BG355452.1|BG355452 EM1_16_F05.b1_A002 Embryo 1 (EM1) So... 55 5e-022
gb|BG052144.1|BG052144 RHIZ2_6_F11.b1_A003 Rhizome2 (RHIZ2)... 55 5e-022
gb|CW215801.1|CW215801 104_648_11194751_148_37118_092 Sorgh... 66 6e-022
gb|CW215800.1|CW215800 104_648_11194751_116_37117_092 Sorgh... 66 6e-022
gb|BE917670.1|BE917670 OV1_6_F07.g1_A002 Ovary 1 (OV1) Sorg... 73 8e-022
gb|CW059494.1|CW059494 104_302_10519350_114_30165 Sorghum m... 73 8e-022
gb|CW204093.1|CW204093 104_632_11186356_116_36920_016 Sorgh... 84 1e-021
gb|CW381842.1|CW381842 fsbb001f063g24k0 Sorghum methylation... 105 2e-021
gb|CD230048.1|CD230048 SS1_40_H09.g1_A012 Salt-stressed see... 55 2e-021
gb|CW075931.1|CW075931 104_363_10809810_116_31801_258 Sorgh... 68 3e-021
gb|CW386714.1|CW386714 fsbb001f070m01f0 Sorghum methylation... 66 3e-021
gb|BE361754.1|BE361754 DG1_82_G01.b1_A002 Dark Grown 1 (DG1... 55 3e-021
gb|CW201862.1|CW201862 104_627_11184792_116_37108_082 Sorgh... 71 7e-021
gb|CW330582.1|CW330582 104_827_11480451_116_36011_006 Sorgh... 73 8e-021
>gb|BG412450.1|BG412450 OV2_34_C12.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 657
Score = 434 bits (943), Expect = e-121
Identities = 175/198 (88%), Positives = 183/198 (92%)
Frame = +3 / +2
Query: 228 TTDSGACGYKGELGKDYGTLTAAVGPSLYTNGTGCGACYELKGPKGTVVVTATNEAPPPV 407
TTD GACGYKGELGKDYG LTAAVGPSLYTNG GCGACYELKG KGTVVVTATN+APPPV
Sbjct: 11 TTDGGACGYKGELGKDYGALTAAVGPSLYTNGAGCGACYELKGSKGTVVVTATNQAPPPV 190
Query: 408 SGQKGEHFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVG 587
SGQKGEHFDLT+PAFLKI EEKAGIVPITYRKVAC R+GGIRYTITGN +Y+ V VTNVG
Sbjct: 191 SGQKGEHFDLTMPAFLKIDEEKAGIVPITYRKVACARQGGIRYTITGNPNYNMVMVTNVG 370
Query: 588 GAGDVVALWVKGNKRVKWTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPR 767
GAGDVVAL VKGNKRVKWTPMKRSWGQLW TEV+LTGESLTFRVMT DHRKATSWHV PR
Sbjct: 371 GAGDVVALSVKGNKRVKWTPMKRSWGQLWITEVNLTGESLTFRVMTGDHRKATSWHVAPR 550
Query: 768 DWQFGKTYQATKNF*GRI 821
DW++ KTYQATKNF* RI
Sbjct: 551 DWKYDKTYQATKNF*DRI 604
Score = 327 bits (709), Expect(2) = 3e-098
Identities = 146/177 (82%), Positives = 150/177 (84%)
Frame = -2 / -1
Query: 820 IRP*KFLVAWYVLPNCQSRGVTCQEVALRWSAVMTRNVSDSPVRSTSVVQSWPQLRFIGV 641
IR *KFLVAWYVL QSRG TCQEVALRWS VMTRNVSDSPVR TSV+QS PQLRFIGV
Sbjct: 603 IRS*KFLVAWYVLSYFQSRGATCQEVALRWSPVMTRNVSDSPVRLTSVIQSCPQLRFIGV 424
Query: 640 HLTRLLPFTHXXXXXXXXXTLVTFTSL*CWFPVIVYRMPPFLSHATLR*VMGTMPAFSSA 461
HLTRLLPFT TLVT T L* FPV+VYRMPP L+HATLR*VMGTMPAFSS+
Sbjct: 423 HLTRLLPFTDSATTSPAPPTLVTITML*FGFPVMVYRMPPCLAHATLR*VMGTMPAFSSS 244
Query: 460 ILRNAGMVRSKCSPFCPLTGGGASLVAVTTTVPLGPLSS*HAPHPVPLVYSDGPTAA 290
ILRNAGMVRSKCSPFCPLTGGGA LVAVTTTVPL PLSS*HAPHP PLV SDGPTAA
Sbjct: 243 ILRNAGMVRSKCSPFCPLTGGGAWLVAVTTTVPLEPLSS*HAPHPAPLV*SDGPTAA 73
Score = 210 bits (454), Expect(2) = 7e-062
Identities = 97/144 (67%), Positives = 101/144 (70%)
Frame = -1 / -3
Query: 842 RGSAPRPDPALEVLGGLVRFAELPVAGRDVPGGSLAVVGGHDAERQRLAGEVDLRGPELA 663
R P DP LEVLGGLV F LPVAGRDVPGG LAVV GHDAERQRLAGEVDLR PEL+
Sbjct: 625 RRGRPEDDPILEVLGGLVCFVVLPVAGRDVPGGGLAVVAGHDAERQRLAGEVDLRDPELS 446
Query: 662 PAALHRRPLDALVALHPQRHHVPXXXXXXXXXXXXXXVPCDRVPDAAFPLARHLAVXXXX 483
PAALHRRPLDALVALH QRHHVP VP D VPDAA P ARHLA+
Sbjct: 445 PAALHRRPLDALVALHRQRHHVPGAAHVGHHHHVVVRVPRDGVPDAALPRARHLAIGDGH 266
Query: 482 XXXXXXXXLEERRYGEVKVLALLP 411
LEERR+GEV+VLALLP
Sbjct: 265 NAGLLLVDLEERRHGEVEVLALLP 194
Score = 135 bits (289), Expect(4) = 3e-063
Identities = 53/60 (88%), Positives = 56/60 (93%)
Frame = +2 / +1
Query: 641 DADEAQLGPALDHGGRPHRRVADVPRHDRRPPQGYLLARHAPRLAVRQNVPGHQELLGPD 820
DADEAQLG ALDHGG+PHRRVADVPRHDRRPPQG+LLAR APRL VRQN+PGHQELLG D
Sbjct: 424 DADEAQLGTALDHGGQPHRRVADVPRHDRRPPQGHLLARRAPRLEVRQNIPGHQELLGSD 603
Score = 93.6 bits (198), Expect(4) = 3e-063
Identities = 35/42 (83%), Positives = 35/42 (83%)
Frame = +2 / +1
Query: 434 PHHTGVPQDRRGEGRHRAHHLPQGGVREERRHPVHDHREPAL 559
PHH GVPQDRRGEGRH AHHL QGGVRE RRHPVH H EP L
Sbjct: 217 PHHAGVPQDRRGEGRHCAHHLSQGGVREARRHPVHHHGEPEL 342
Score = 53.3 bits (110), Expect(2) = 3e-098
Identities = 20/27 (74%), Positives = 21/27 (77%)
Frame = -3 / -2
Query: 303 GPRPPSGCRSLSPARPCSRTRRCPWCQ 223
GPRPP RS PARPCSRTRR PWC+
Sbjct: 86 GPRPP*ARRSPFPARPCSRTRRRPWCR 6
Score = 52.4 bits (108), Expect(4) = 3e-063
Identities = 20/26 (76%), Positives = 22/26 (84%)
Frame = +2 / +1
Query: 227 HHGQRRVRLQGRAGERLRHPDGGRGP 304
HHG+RRVRLQGRAG+ LR GGRGP
Sbjct: 10 HHGRRRVRLQGRAGKGLRRAHGGRGP 87
Score = 48.7 bits (100), Expect(2) = 7e-062
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = -1 / -3
Query: 338 RAAPGAVGVQRRAHGRRQGAVVFPQ 264
RAAPGAVGV+RRAHGRR+ AVV Q
Sbjct: 121 RAAPGAVGVERRAHGRRERAVVLSQ 47
Score = 24.4 bits (47), Expect(4) = 3e-063
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +1 / +3
Query: 595 GTWWRC 612
GTWWRC
Sbjct: 378 GTWWRC 395
>gb|BG412749.1|BG412749 OV2_34_C12.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 607
Score = 293 bits (634), Expect(2) = 1e-093
Identities = 120/135 (88%), Positives = 125/135 (92%)
Frame = +3 / +3
Query: 228 TTDSGACGYKGELGKDYGTLTAAVGPSLYTNGTGCGACYELKGPKGTVVVTATNEAPPPV 407
TTD GACGYKGELGKDYG LTAAVGPSLYTNG GCGACYELKG KGTVVVTATN+APPPV
Sbjct: 201 TTDGGACGYKGELGKDYGALTAAVGPSLYTNGAGCGACYELKGSKGTVVVTATNQAPPPV 380
Query: 408 SGQKGEHFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVG 587
SGQKGEHFDLT+PAFLKI EEKAGIVPITYRKVAC R+GGIRYTITGN +Y+ V VTNVG
Sbjct: 381 SGQKGEHFDLTMPAFLKIDEEKAGIVPITYRKVACARQGGIRYTITGNPNYNMVMVTNVG 560
Query: 588 GAGDVVALWVKGNKR 632
GAGDVVAL VKGNKR
Sbjct: 561 GAGDVVALSVKGNKR 605
Score = 208 bits (448), Expect(3) = 5e-074
Identities = 93/115 (80%), Positives = 96/115 (83%)
Frame = -2 / -1
Query: 634 TRLLPFTHXXXXXXXXXTLVTFTSL*CWFPVIVYRMPPFLSHATLR*VMGTMPAFSSAIL 455
TRLLPFT TLVT T L* FPV+VYRMPP L+HATLR*VMGTMPAFSS+IL
Sbjct: 607 TRLLPFTDSATTSPAPPTLVTITML*FGFPVMVYRMPPCLAHATLR*VMGTMPAFSSSIL 428
Query: 454 RNAGMVRSKCSPFCPLTGGGASLVAVTTTVPLGPLSS*HAPHPVPLVYSDGPTAA 290
RNAGMVRSKCSPFCPLTGGGA LVAVTTTVPL PLSS*HAPHP PLV SDGPTAA
Sbjct: 427 RNAGMVRSKCSPFCPLTGGGAWLVAVTTTVPLEPLSS*HAPHPAPLV*SDGPTAA 263
Score = 93.6 bits (198), Expect(4) = 4e-031
Identities = 35/42 (83%), Positives = 35/42 (83%)
Frame = +2 / +2
Query: 434 PHHTGVPQDRRGEGRHRAHHLPQGGVREERRHPVHDHREPAL 559
PHH GVPQDRRGEGRH AHHL QGGVRE RRHPVH H EP L
Sbjct: 407 PHHAGVPQDRRGEGRHCAHHLSQGGVREARRHPVHHHGEPEL 532
Score = 88.1 bits (186), Expect(2) = 3e-025
Identities = 34/41 (82%), Positives = 37/41 (90%)
Frame = -3 / -2
Query: 552 GSL*SCTGCRLSSRTPPCGR*WARCRPSPRRS*GTPVW*GQ 430
GS * CTGCRL+SRTPPC R*WA+CRPSPRRS*GTP W*G+
Sbjct: 525 GSP*WCTGCRLASRTPPCDR*WAQCRPSPRRS*GTPAW*GR 403
Score = 72.5 bits (152), Expect(2) = 1e-093
Identities = 24/26 (92%), Positives = 26/26 (100%)
Frame = +3 / +3
Query: 141 PHVNHGKFKAEPWTDGHATYYGGRDG 218
PHVNHGKFKA+PWTDGHAT+YGGRDG
Sbjct: 117 PHVNHGKFKADPWTDGHATFYGGRDG 194
Score = 57.9 bits (120), Expect(3) = 5e-074
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = -2 / -1
Query: 193 ACPSVHGSALNLPWLTWGFF 134
ACPSVHGSALNLPWLTWGFF
Sbjct: 169 ACPSVHGSALNLPWLTWGFF 110
Score = 53.3 bits (110), Expect(3) = 5e-074
Identities = 20/27 (74%), Positives = 21/27 (77%)
Frame = -3 / -2
Query: 303 GPRPPSGCRSLSPARPCSRTRRCPWCQ 223
GPRPP RS PARPCSRTRR PWC+
Sbjct: 276 GPRPP*ARRSPFPARPCSRTRRRPWCR 196
Score = 52.4 bits (108), Expect(4) = 4e-031
Identities = 20/26 (76%), Positives = 22/26 (84%)
Frame = +2 / +2
Query: 227 HHGQRRVRLQGRAGERLRHPDGGRGP 304
HHG+RRVRLQGRAG+ LR GGRGP
Sbjct: 200 HHGRRRVRLQGRAGKGLRRAHGGRGP 277
Score = 48.7 bits (100), Expect(2) = 3e-025
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = -1 / -3
Query: 338 RAAPGAVGVQRRAHGRRQGAVVFPQ 264
RAAPGAVGV+RRAHGRR+ AVV Q
Sbjct: 311 RAAPGAVGVERRAHGRRERAVVLSQ 237
Score = 25.4 bits (49), Expect(4) = 4e-031
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2 / +2
Query: 131 QKEAPRQPRQV*GG 172
++EAPR PRQV GG
Sbjct: 107 EEEAPR*PRQVQGG 148
Score = 24.4 bits (47), Expect(4) = 4e-031
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +1 / +1
Query: 595 GTWWRC 612
GTWWRC
Sbjct: 568 GTWWRC 585
>gb|CL195140.1|CL195140 104_420_10942159_114_32302_028 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10942159, DNA
sequence
Length = 654
Score = 243 bits (525), Expect = 3e-063
Identities = 95/130 (73%), Positives = 113/130 (86%)
Frame = +3 / -2
Query: 423 EHFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDV 602
EHFDL++PAFL+IAEEKAGIVP++YR+VAC R+GGIRY I GN++++ V VTNVGGAGDV
Sbjct: 548 EHFDLSMPAFLQIAEEKAGIVPVSYRRVACARQGGIRYAIAGNKYFNMVTVTNVGGAGDV 369
Query: 603 VALWVKGNKRVKWTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFG 782
A+ VKG+KRVKWT +KR+WG +W T DLT ESLTFRVMT DHRKATSWHV P DW+FG
Sbjct: 368 AAVSVKGSKRVKWTELKRNWGVVWQTGEDLTCESLTFRVMTGDHRKATSWHVLPEDWKFG 189
Query: 783 KTYQATKNF* 812
TYQA+KNF*
Sbjct: 188 VTYQASKNF* 159
Score = 185 bits (398), Expect = 1e-045
Identities = 86/130 (66%), Positives = 92/130 (70%)
Frame = -2 / +1
Query: 811 *KFLVAWYVLPNCQSRGVTCQEVALRWSAVMTRNVSDSPVRSTSVVQSWPQLRFIGVHLT 632
*KFL AWYV PN QS G TC +VALRWS V+T NVSDS VRS+ V + PQLRF VHLT
Sbjct: 160 *KFLDAWYVTPNFQSSGRTCHDVALRWSPVITLNVSDSQVRSSPVCHTTPQLRFSSVHLT 339
Query: 631 RLLPFTHXXXXXXXXXTLVTFTSL*CWFPVIVYRMPPFLSHATLR*VMGTMPAFSSAILR 452
RLLPFT TLVT T L FP + YRMPP L+HAT R* GTMPAFSSAI R
Sbjct: 340 RLLPFTDTAATSPAPPTLVTVTMLKYLFPAMAYRMPPCLAHATRR*ETGTMPAFSSAIWR 519
Query: 451 NAGMVRSKCS 422
NAGM RSKCS
Sbjct: 520 NAGMDRSKCS 549
Score = 130 bits (278), Expect = 4e-029
Identities = 69/131 (52%), Positives = 73/131 (55%)
Frame = -1 / +3
Query: 815 ALEVLGGLVRFAELPVAGRDVPGGSLAVVGGHDAERQRLAGEVDLRGPELAPAALHRRPL 636
+LEVLG LVR AELPV G DVP LAVV GH ERQRLAGEV P P AL RPL
Sbjct: 156 SLEVLGRLVRDAELPVLGEDVPRRGLAVVAGHHPERQRLAGEVLPGLPHYPPVALQLRPL 335
Query: 635 DALVALHPQRHHVPXXXXXXXXXXXXXXVPCDRVPDAAFPLARHLAVXXXXXXXXXXXXL 456
DAL LH R HV VP D VPDAA P ARH V L
Sbjct: 336 DALAPLHRHRRHVAGAAHVGDRHHVEVLVPGDGVPDAALPRARHPPVGDGHDAGLLLRDL 515
Query: 455 EERRYGEVKVL 423
EERR+G+V+VL
Sbjct: 516 EERRHGQVEVL 548
Score = 72.5 bits (152), Expect(2) = 3e-026
Identities = 33/57 (57%), Positives = 40/57 (70%)
Frame = +2 / -1
Query: 641 DADEAQLGPALDHGGRPHRRVADVPRHDRRPPQGYLLARHAPRLAVRQNVPGHQELL 811
D EAQLG ++ G PH RVADV DRRPPQG+++AR L VR++VPG QELL
Sbjct: 330 DGAEAQLGGSVADRGGPHLRVADVQGDDRRPPQGHVVARPPRGLEVRRHVPGVQELL 160
Score = 68.0 bits (142), Expect(2) = 3e-026
Identities = 28/42 (66%), Positives = 28/42 (66%)
Frame = +2 / -1
Query: 434 PHHTGVPQDRRGEGRHRAHHLPQGGVREERRHPVHDHREPAL 559
P H GVP DR GEGRHRA LP GGVRE RHPV RE L
Sbjct: 537 PVHAGVPPDRGGEGRHRARLLPAGGVREAGRHPVRHRREQVL 412
>gb|CW136107.1|CW136107 104_521_11118204_116_34845_048 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11118204, DNA
sequence
Length = 597
Score = 241 bits (521), Expect = 1e-062
Identities = 94/130 (72%), Positives = 112/130 (86%)
Frame = +3 / -2
Query: 423 EHFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDV 602
EHFDL++PAF +IAEEKAGIVP++YR+VAC R+GGIRY I GN++++ V VTNVGGAGDV
Sbjct: 593 EHFDLSMPAFFQIAEEKAGIVPVSYRRVACARQGGIRYAIAGNKYFNMVTVTNVGGAGDV 414
Query: 603 VALWVKGNKRVKWTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFG 782
A+ VKG+KRVKWT +KR+WG +W T DLT ESLTFRVMT DHRKATSWHV P DW+FG
Sbjct: 413 AAVSVKGSKRVKWTELKRNWGVVWQTGEDLTCESLTFRVMTGDHRKATSWHVLPEDWKFG 234
Query: 783 KTYQATKNF* 812
TYQA+KNF*
Sbjct: 233 VTYQASKNF* 204
Score = 183 bits (395), Expect = 3e-045
Identities = 85/130 (65%), Positives = 92/130 (70%)
Frame = -2 / +1
Query: 811 *KFLVAWYVLPNCQSRGVTCQEVALRWSAVMTRNVSDSPVRSTSVVQSWPQLRFIGVHLT 632
*KFL AWYV PN QS G TC +VALRWS V+T NVSDS VRS+ V + PQLRF VHLT
Sbjct: 205 *KFLDAWYVTPNFQSSGRTCHDVALRWSPVITLNVSDSQVRSSPVCHTTPQLRFSSVHLT 384
Query: 631 RLLPFTHXXXXXXXXXTLVTFTSL*CWFPVIVYRMPPFLSHATLR*VMGTMPAFSSAILR 452
RLLPFT TLVT T L FP + YRMPP L+HAT R* GTMPAFSSAI +
Sbjct: 385 RLLPFTDTAATSPAPPTLVTVTMLKYLFPAMAYRMPPCLAHATRR*ETGTMPAFSSAIWK 564
Query: 451 NAGMVRSKCS 422
NAGM RSKCS
Sbjct: 565 NAGMDRSKCS 594
Score = 130 bits (278), Expect = 4e-029
Identities = 69/131 (52%), Positives = 73/131 (55%)
Frame = -1 / +3
Query: 815 ALEVLGGLVRFAELPVAGRDVPGGSLAVVGGHDAERQRLAGEVDLRGPELAPAALHRRPL 636
+LEVLG LVR AELPV G DVP LAVV GH ERQRLAGEV P P AL RPL
Sbjct: 201 SLEVLGRLVRDAELPVLGEDVPRRGLAVVAGHHPERQRLAGEVLPGLPHYPPVALQLRPL 380
Query: 635 DALVALHPQRHHVPXXXXXXXXXXXXXXVPCDRVPDAAFPLARHLAVXXXXXXXXXXXXL 456
DAL LH R HV VP D VPDAA P ARH V L
Sbjct: 381 DALAPLHRHRRHVAGAAHVGDRHHVEVLVPGDGVPDAALPRARHPPVGDGHDAGLLLRDL 560
Query: 455 EERRYGEVKVL 423
EERR+G+V+VL
Sbjct: 561 EERRHGQVEVL 593
Score = 72.5 bits (152), Expect(2) = 6e-025
Identities = 33/57 (57%), Positives = 40/57 (70%)
Frame = +2 / -1
Query: 641 DADEAQLGPALDHGGRPHRRVADVPRHDRRPPQGYLLARHAPRLAVRQNVPGHQELL 811
D EAQLG ++ G PH RVADV DRRPPQG+++AR L VR++VPG QELL
Sbjct: 375 DGAEAQLGGSVADRGGPHLRVADVQGDDRRPPQGHVVARPPRGLEVRRHVPGVQELL 205
Score = 63.4 bits (132), Expect(2) = 6e-025
Identities = 27/42 (64%), Positives = 27/42 (64%)
Frame = +2 / -1
Query: 434 PHHTGVPQDRRGEGRHRAHHLPQGGVREERRHPVHDHREPAL 559
P H GV DR GEGRHRA LP GGVRE RHPV RE L
Sbjct: 582 PVHAGVLPDRGGEGRHRARLLPAGGVREAGRHPVRHRREQVL 457
>gb|CN136232.1|CN136232 OX1_41_D05.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_41_D05_A002 5', mRNA sequence
Length = 840
Score = 100 bits (212), Expect(5) = 2e-050
Identities = 38/67 (56%), Positives = 54/67 (80%)
Frame = +3 / +1
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HFD+ PAFL+IA+ +AGIVP+ YR+V C +KGGIR+TI G+ +++ V VTNV GAGDV
Sbjct: 457 HFDMAQPAFLQIAQYRAGIVPVAYRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDVQ 636
Query: 606 ALWVKGN 626
++ +KG+
Sbjct: 637 SVSIKGS 657
Score = 68.4 bits (143), Expect(5) = 2e-050
Identities = 25/55 (45%), Positives = 35/55 (63%)
Frame = +3 / +1
Query: 639 WTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTYQATK 803
W PM R+WGQ W + L G+SL+F+V +D R TS V P WQFG+T++ +
Sbjct: 667 WQPMSRNWGQNWQSNSLLDGQSLSFQVTASDGRTVTSNGVAPAGWQFGQTFEGAQ 831
Score = 54.7 bits (113), Expect(5) = 2e-050
Identities = 20/41 (48%), Positives = 26/41 (63%)
Frame = +3 / +1
Query: 231 TDSGACGYKGELGKDYGTLTAAVGPSLYTNGTGCGACYELK 353
T GACGY YGT TAA+ +L+ +G CG+CYEL+
Sbjct: 214 TMGGACGYGNMYSTGYGTNTAALSTALFNDGAACGSCYELR 336
Score = 27.2 bits (53), Expect(5) = 2e-050
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3 / +1
Query: 177 WTDGHATYYGGRD 215
W HAT+YGG D
Sbjct: 166 WQSAHATFYGGGD 204
Score = 25.4 bits (49), Expect(5) = 2e-050
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3 / +1
Query: 363 GTVVVTATNEAPP 401
GT+ VTATN PP
Sbjct: 367 GTITVTATNFCPP 405
>gb|CF430353.1|CF430353 PH1_27_A08.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_27_A08_A002 5', mRNA sequence
Length = 787
Score = 100 bits (212), Expect(5) = 9e-045
Identities = 38/67 (56%), Positives = 54/67 (80%)
Frame = +3 / +2
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HFD+ PAFL+IA+ +AGIVP+ YR+V C +KGGIR+TI G+ +++ V VTNV GAGDV
Sbjct: 461 HFDMAQPAFLQIAQYRAGIVPVAYRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDVQ 640
Query: 606 ALWVKGN 626
++ +KG+
Sbjct: 641 SVSIKGS 661
Score = 54.7 bits (113), Expect(5) = 9e-045
Identities = 20/41 (48%), Positives = 26/41 (63%)
Frame = +3 / +1
Query: 231 TDSGACGYKGELGKDYGTLTAAVGPSLYTNGTGCGACYELK 353
T GACGY YGT TAA+ +L+ +G CG+CYEL+
Sbjct: 217 TMGGACGYGNMYSTGYGTNTAALSTALFNDGAACGSCYELR 339
Score = 48.7 bits (100), Expect(5) = 9e-045
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = +3 / +2
Query: 639 WTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATS 749
W PM R+WGQ W + L G+SL+F+V +D R TS
Sbjct: 671 WQPMSRNWGQNWQSNSLLDGQSLSFQVTASDGRTVTS 781
Score = 27.2 bits (53), Expect(5) = 9e-045
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3 / +1
Query: 177 WTDGHATYYGGRD 215
W HAT+YGG D
Sbjct: 169 WQSAHATFYGGGD 207
Score = 25.4 bits (49), Expect(5) = 9e-045
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3 / +1
Query: 363 GTVVVTATNEAPP 401
GT+ VTATN PP
Sbjct: 370 GTITVTATNFCPP 408
>gb|CX607081.1|CX607081 ANR1_6_C12.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_6_C12_A002 5', mRNA sequence
Length = 705
Score = 100 bits (212), Expect(5) = 3e-039
Identities = 38/67 (56%), Positives = 54/67 (80%)
Frame = +3 / +3
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HFD+ PAFL+IA+ +AGIVP+ YR+V C +KGGIR+TI G+ +++ V VTNV GAGDV
Sbjct: 444 HFDMAQPAFLQIAQYRAGIVPVAYRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDVQ 623
Query: 606 ALWVKGN 626
++ +KG+
Sbjct: 624 SVSIKGS 644
Score = 54.7 bits (113), Expect(5) = 3e-039
Identities = 20/41 (48%), Positives = 26/41 (63%)
Frame = +3 / +3
Query: 231 TDSGACGYKGELGKDYGTLTAAVGPSLYTNGTGCGACYELK 353
T GACGY YGT TAA+ +L+ +G CG+CYEL+
Sbjct: 201 TMGGACGYGNMYSTGYGTNTAALSTALFNDGAACGSCYELR 323
Score = 29.5 bits (58), Expect(5) = 3e-039
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +3 / +3
Query: 639 WTPMKRSWGQLW 674
W PM R+WGQ W
Sbjct: 654 WQPMSRNWGQNW 689
Score = 27.2 bits (53), Expect(5) = 3e-039
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3 / +3
Query: 177 WTDGHATYYGGRD 215
W HAT+YGG D
Sbjct: 153 WQSAHATFYGGGD 191
Score = 25.4 bits (49), Expect(5) = 3e-039
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3 / +3
Query: 363 GTVVVTATNEAPP 401
GT+ VTATN PP
Sbjct: 354 GTITVTATNFCPP 392
>gb|CW221659.1|CW221659 104_656_11198028_148_37170_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11198028, DNA
sequence
Length = 626
Score = 161 bits (346), Expect = 2e-038
Identities = 58/128 (45%), Positives = 88/128 (68%)
Frame = +3 / -3
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HFD++ PA+ I +AG++P+ YR+V+C+R GGIR+ I+G+ ++ V +TNVGGAG V
Sbjct: 588 HFDMSQPAWETIGVYQAGVIPVNYRRVSCQRSGGIRFAISGHDYFDLVTITNVGGAGAVA 409
Query: 606 ALWVKGNKRVKWTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGK 785
A W+ G W M R+WG+ W + +LTG++L+F+V T D + + +V P +WQFG
Sbjct: 408 AAWIMGTGGTDWLAMSRNWGENWQSGANLTGKALSFKVQTDDGKVVVADNVAPANWQFGS 229
Query: 786 TYQATKNF 809
TYQA+ NF
Sbjct: 228 TYQASVNF 205
>gb|CL171843.1|CL171843 104_374_10889716_116_31775_004 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10889716, DNA
sequence
Length = 581
Score = 160 bits (344), Expect = 3e-038
Identities = 58/128 (45%), Positives = 87/128 (67%)
Frame = +3 / -1
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HFD+ PA+ I +AG++P+ YR+V+C+R GGIR+ I+G+ ++ V +TNVGGAG V
Sbjct: 551 HFDMLQPAWETIGVYQAGVIPVNYRRVSCQRSGGIRFAISGHDYFDLVTITNVGGAGAVA 372
Query: 606 ALWVKGNKRVKWTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGK 785
A W+ G W M R+WG+ W + +LTG++L+F+V T D + + +V P +WQFG
Sbjct: 371 AAWIMGTGGTDWLAMSRNWGENWQSGANLTGKALSFKVQTDDGKVVVADNVAPANWQFGS 192
Query: 786 TYQATKNF 809
TYQA+ NF
Sbjct: 191 TYQASVNF 168
>gb|BI140900.1|BI140900 IP1_40_E08.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 622
Score = 95.9 bits (203), Expect(4) = 4e-038
Identities = 36/67 (53%), Positives = 51/67 (76%)
Frame = +3 / +2
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HFDL +P FL IAE +AGIVP++YR+V C + GG+R+TI G ++++ V +TNV GAGD+V
Sbjct: 302 HFDLAMPMFLHIAEYRAGIVPVSYRRVPCRKSGGVRFTINGFRYFNLVLITNVAGAGDIV 481
Query: 606 ALWVKGN 626
VK +
Sbjct: 482 RASVKAS 502
Score = 50.6 bits (104), Expect(4) = 4e-038
Identities = 19/41 (46%), Positives = 24/41 (58%)
Frame = +3 / +1
Query: 231 TDSGACGYKGELGKDYGTLTAAVGPSLYTNGTGCGACYELK 353
T GACGY + YG AA+ +L+ G CGAC+ELK
Sbjct: 46 TMGGACGYGNLYSQGYGVNNAALSTALFNEGLSCGACFELK 168
Score = 47.8 bits (98), Expect(4) = 4e-038
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +3 / +2
Query: 639 WTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATS 749
W M R+WGQ W + L G++L+FRV +D R +TS
Sbjct: 512 WLTMSRNWGQNWQSNAILVGQALSFRVTGSDRRTSTS 622
Score = 25.8 bits (50), Expect(4) = 4e-038
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +3 / +1
Query: 186 GHATYYGGRD 215
GHAT+YGG D
Sbjct: 7 GHATFYGGSD 36
>gb|CF429993.1|CF429993 PH1_25_G07.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_25_G07_A002 5', mRNA sequence
Length = 823
Score = 95.9 bits (203), Expect(4) = 5e-038
Identities = 36/67 (53%), Positives = 51/67 (76%)
Frame = +3 / +3
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HFDL +P FL IAE +AGIVP++YR+V C + GG+R+TI G ++++ V +TNV GAGD+V
Sbjct: 510 HFDLAMPMFLHIAEYRAGIVPVSYRRVPCRKSGGVRFTINGFRYFNLVLITNVAGAGDIV 689
Query: 606 ALWVKGN 626
VK +
Sbjct: 690 RASVKAS 710
Score = 53.3 bits (110), Expect(4) = 5e-038
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = +3 / +3
Query: 231 TDSGACGYKGELGKDYGTLTAAVGPSLYTNGTGCGACYELK 353
T GACGY + YG AA+G +L+ G CGAC+ELK
Sbjct: 255 TMGGACGYGNLYSQGYGVNNAALGTALFNEGLSCGACFELK 377
Score = 43.7 bits (89), Expect(4) = 5e-038
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +3 / +3
Query: 639 WTPMKRSWGQLWTTEVDLTGESLTFRVMTADHR 737
W M R+WGQ W + L G++L+FRV +D R
Sbjct: 720 WLTMSRNWGQNWQSNAILVGQALSFRVTGSDRR 818
Score = 28.1 bits (55), Expect(4) = 5e-038
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +3 / +3
Query: 156 GKFKAEPWTDGHATYYGGRD 215
G + W HAT+YGG D
Sbjct: 186 GVYGGGGWQSAHATFYGGSD 245
>gb|BG049384.1|BG049384 OV1_19_C06.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 555
Score = 159 bits (342), Expect = 6e-038
Identities = 58/128 (45%), Positives = 87/128 (67%)
Frame = +3 / +3
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HFD++ PA+ I +AG++P+ YR+V+C+R GGIR+ I+G+ ++ V +TNVGGAG V
Sbjct: 60 HFDMSQPAWETIGVYQAGVIPVNYRRVSCQRSGGIRFAISGHDYFDLVTITNVGGAGAVA 239
Query: 606 ALWVKGNKRVKWTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGK 785
A W+ G W M R+WG+ W + LTG++L+F+V T D + + +V P +WQFG
Sbjct: 240 AAWIMGTGGTDWLAMSRNWGENWQSGAYLTGKALSFKVQTDDGKVVVADNVAPANWQFGS 419
Query: 786 TYQATKNF 809
TYQA+ NF
Sbjct: 420 TYQASVNF 443
>gb|DN551840.1|DN551840 pSPR-RT-A-H2_G06_S131 pSPR Sorghum propinquum cDNA, mRNA sequence
Length = 861
Score = 98.2 bits (208), Expect(3) = 1e-037
Identities = 37/67 (55%), Positives = 54/67 (80%)
Frame = +3 / +2
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HFDL++PAFL+IA+ +A IVP+TYR+VAC + GGIR+ + G ++++ V ++NVGGAGDVV
Sbjct: 533 HFDLSMPAFLRIADYRASIVPVTYRRVACRKSGGIRFGVNGFRYFNLVLISNVGGAGDVV 712
Query: 606 ALWVKGN 626
VK +
Sbjct: 713 RAAVKAS 733
Score = 54.2 bits (112), Expect(3) = 1e-037
Identities = 19/40 (47%), Positives = 26/40 (65%)
Frame = +3 / +2
Query: 636 KWTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWH 755
+W P+ R+WGQ W L G +L+FRV T+D R TSW+
Sbjct: 740 EWLPLARNWGQNWQCSSILVGGALSFRVTTSDRRTLTSWN 859
Score = 48.7 bits (100), Expect(3) = 1e-037
Identities = 19/41 (46%), Positives = 23/41 (56%)
Frame = +3 / +2
Query: 231 TDSGACGYKGELGKDYGTLTAAVGPSLYTNGTGCGACYELK 353
T GACGY YG T A+ L+ NG CGAC+E+K
Sbjct: 269 TMGGACGYGNLYIAGYGMATGALSTPLFNNGLTCGACFEIK 391
>gb|CW408701.1|CW408701 fsbb001f102l07k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f102l07, DNA
sequence
Length = 685
Score = 83.5 bits (176), Expect(4) = 2e-036
Identities = 29/66 (43%), Positives = 46/66 (69%)
Frame = +3 / -1
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HFD++ P++ KI + GI+P+ Y++V C R GG+R+ I G+ ++ V + N+GG+G V
Sbjct: 412 HFDMSQPSWEKIGVVQGGIIPVLYQQVKCSRSGGVRFNIAGSSYFLLVNIQNLGGSGSVG 233
Query: 606 ALWVKG 623
A WVKG
Sbjct: 232 AAWVKG 215
Score = 57.0 bits (118), Expect(4) = 2e-036
Identities = 22/57 (38%), Positives = 30/57 (52%)
Frame = +3 / -1
Query: 639 WTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTYQATKNF 809
W M R+WG W LTG++L+F V T + +V P WQFG+TY + F
Sbjct: 202 WIQMSRNWGANWQALSGLTGQALSFAVTTTGGQYIQFLNVAPTWWQFGQTYSTNQQF 32
Score = 44.1 bits (90), Expect(4) = 2e-036
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3 / -1
Query: 231 TDSGACGYKGELGKDYGTLTAAVGPSLYTNGTGCGACYEL 350
T GACGY YG AA+ +L+ +G CG CY +
Sbjct: 661 TMGGACGYGNLYSAGYGVNNAALSQTLFNDGASCGQCYTI 542
Score = 25.4 bits (49), Expect(4) = 2e-036
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +3 / -1
Query: 357 PKGTVVVTATNEAPP 401
P TV VTATN PP
Sbjct: 502 PGNTVTVTATNLCPP 458
>gb|CN136158.1|CN136158 OX1_41_D05.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_41_D05_A002 3', mRNA sequence
Length = 725
Score = 97.3 bits (206), Expect(3) = 6e-036
Identities = 37/67 (55%), Positives = 53/67 (79%)
Frame = +3 / +2
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
H D+ PAFL+IA+ +AGIVP+ YR+V C +KGGIR+TI G+ +++ V VTNV GAGDV
Sbjct: 122 HLDMAQPAFLQIAQYRAGIVPVAYRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDVQ 301
Query: 606 ALWVKGN 626
++ +KG+
Sbjct: 302 SVSIKGS 322
Score = 68.4 bits (143), Expect(3) = 6e-036
Identities = 25/55 (45%), Positives = 35/55 (63%)
Frame = +3 / +2
Query: 639 WTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTYQATK 803
W PM R+WGQ W + L G+SL+F+V +D R TS V P WQFG+T++ +
Sbjct: 332 WQPMSRNWGQNWQSNSLLDGQSLSFQVTASDGRTVTSNGVAPAGWQFGQTFEGAQ 496
Score = 25.4 bits (49), Expect(3) = 6e-036
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3 / +2
Query: 363 GTVVVTATNEAPP 401
GT+ VTATN PP
Sbjct: 32 GTITVTATNFCPP 70
>gb|CD231880.1|CD231880 SS1_30_D11.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_30_D11_A012 5', mRNA sequence
Length = 691
Score = 98.2 bits (208), Expect(4) = 2e-034
Identities = 38/67 (56%), Positives = 53/67 (79%)
Frame = +3 / +2
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HFD+ PAFL+IA+ +AGIVP+ YR+V C +KGGIR+TI G+ + + V VTNV GAGDV
Sbjct: 461 HFDMAQPAFLQIAQYRAGIVPVAYRRVPCVKKGGIRFTINGHSYINLVLVTNVAGAGDVQ 640
Query: 606 ALWVKGN 626
++ +KG+
Sbjct: 641 SVSIKGS 661
Score = 52.8 bits (109), Expect(4) = 2e-034
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = +3 / +2
Query: 231 TDSGACGYKGELGKDYGTLTAAVGPSLYTNGTGCGACYELK 353
T G CGY YGT TAA+ +L+ +G CG+CYEL+
Sbjct: 218 TMGGVCGYGNMYSTGYGTNTAALSTALFNDGAACGSCYELR 340
Score = 27.2 bits (53), Expect(4) = 2e-034
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3 / +2
Query: 177 WTDGHATYYGGRD 215
W HAT+YGG D
Sbjct: 170 WQSAHATFYGGGD 208
Score = 25.4 bits (49), Expect(4) = 2e-034
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3 / +2
Query: 363 GTVVVTATNEAPP 401
GT+ VTATN PP
Sbjct: 371 GTITVTATNFCPP 409
>gb|CW471322.1|CW471322 fsbb001f225c11f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f225c11, DNA
sequence
Length = 510
Score = 148 bits (317), Expect = 2e-034
Identities = 52/112 (46%), Positives = 78/112 (69%)
Frame = +3 / -1
Query: 474 AGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVVALWVKGNKRVKWTPMK 653
AG++P+ YR+V+C+R GGIR+ I+G+ ++ V +TNVGGAG V A W+ G W M
Sbjct: 510 AGVIPVNYRRVSCQRSGGIRFAISGHDYFDLVTITNVGGAGAVAAAWIMGTGGTDWLAMS 331
Query: 654 RSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTYQATKNF 809
R+WG+ W + +LTG++L+F+V T D + + +V P +WQFG TYQA+ NF
Sbjct: 330 RNWGENWQSGANLTGKALSFKVQTDDGKVVVADNVAPANWQFGSTYQASVNF 175
>gb|CN124528.1|CN124528 RHOH1_5_H07.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_5_H07_A002 3', mRNA sequence
Length = 754
Score = 82.2 bits (173), Expect(3) = 7e-034
Identities = 29/68 (42%), Positives = 48/68 (70%)
Frame = +3 / +3
Query: 423 EHFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDV 602
+HFD++ P++ KI GIVP+ Y++V+C R GG+R+TI GN+++ V + NV G G +
Sbjct: 267 QHFDMSQPSWEKIGVYSGGIVPVFYQRVSCSRTGGVRFTINGNRYFKLVLIFNVAGPGSI 446
Query: 603 VALWVKGN 626
A+ +KG+
Sbjct: 447 SAVQIKGS 470
Score = 57.0 bits (118), Expect(3) = 7e-034
Identities = 21/57 (36%), Positives = 32/57 (56%)
Frame = +3 / +3
Query: 639 WTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTYQATKNF 809
W M R+WG W DLT +S++FRV + R ++V +WQ G+T+ +NF
Sbjct: 480 WITMSRNWGANWQANSDLTRQSISFRVTATNGRFLEFYNVAGSNWQLGQTFTNGQNF 650
Score = 49.2 bits (101), Expect(3) = 7e-034
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +3 / +3
Query: 231 TDSGACGYKGELGKDYGTLTAAVGPSLYTNGTGCGACYELK 353
T GACGY YGT TAA+ +++ G CG CY++K
Sbjct: 21 TMGGACGYGNLYSAGYGTDTAALSLAMFNGGAACGECYQVK 143
>gb|CW083023.1|CW083023 104_425_10944087_114_32352_060 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10944087, DNA
sequence
Length = 704
Score = 86.3 bits (182), Expect(3) = 8e-034
Identities = 30/68 (44%), Positives = 49/68 (72%)
Frame = +3 / -1
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HFD++ PA+ +I AG++P+ Y++V C R GG+R+ I G+Q++ V + N+GG+G V
Sbjct: 482 HFDMSQPAWERIGIYSAGVIPVLYQQVKCSRTGGVRFGIAGSQYFLLVNIQNLGGSGSVG 303
Query: 606 ALWVKGNK 629
A WVKG++
Sbjct: 302 AAWVKGDR 279
Score = 69.8 bits (146), Expect(3) = 8e-034
Identities = 26/60 (43%), Positives = 33/60 (55%)
Frame = +3 / -1
Query: 630 RVKWTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTYQATKNF 809
R W M R+WG W L G+ L+F V T + W+V PR WQFG+TY T+NF
Sbjct: 281 RTGWIQMSRNWGANWQALAGLVGQGLSFAVTTTGGQYIQFWNVVPRWWQFGQTYTTTQNF 102
Score = 31.8 bits (63), Expect(3) = 8e-034
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3 / -1
Query: 276 YGTLTAAVGPSLYTNGTGCGACY 344
YG AA+ +L+ +G CG CY
Sbjct: 686 YGVNNAALSSTLFNDGASCGQCY 618
>gb|CW083024.1|CW083024 104_425_10944087_114_32388_060 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10944087, DNA
sequence
Length = 711
Score = 86.3 bits (182), Expect(3) = 8e-034
Identities = 30/68 (44%), Positives = 49/68 (72%)
Frame = +3 / -2
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HFD++ PA+ +I AG++P+ Y++V C R GG+R+ I G+Q++ V + N+GG+G V
Sbjct: 482 HFDMSQPAWERIGIYSAGVIPVLYQQVKCSRTGGVRFGIAGSQYFLLVNIQNLGGSGSVG 303
Query: 606 ALWVKGNK 629
A WVKG++
Sbjct: 302 AAWVKGDR 279
Score = 69.8 bits (146), Expect(3) = 8e-034
Identities = 26/60 (43%), Positives = 33/60 (55%)
Frame = +3 / -2
Query: 630 RVKWTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTYQATKNF 809
R W M R+WG W L G+ L+F V T + W+V PR WQFG+TY T+NF
Sbjct: 281 RTGWIQMSRNWGANWQALAGLVGQGLSFAVTTTGGQYIQFWNVVPRWWQFGQTYTTTQNF 102
Score = 31.8 bits (63), Expect(3) = 8e-034
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3 / -2
Query: 276 YGTLTAAVGPSLYTNGTGCGACY 344
YG AA+ +L+ +G CG CY
Sbjct: 686 YGVNNAALSSTLFNDGASCGQCY 618
>gb|CW210014.1|CW210014 104_640_11189567_148_36998_092 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11189567, DNA
sequence
Length = 675
Score = 83.5 bits (176), Expect(4) = 3e-033
Identities = 29/66 (43%), Positives = 46/66 (69%)
Frame = +3 / -3
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HFD++ P++ KI + GI+P+ Y++V C R GG+R+ I G+ ++ V + N+GG+G V
Sbjct: 460 HFDMSQPSWEKIGVVQGGIIPVLYQQVKCSRSGGVRFNIAGSSYFLLVNIQNLGGSGSVG 281
Query: 606 ALWVKG 623
A WVKG
Sbjct: 280 AAWVKG 263
Score = 57.0 bits (118), Expect(4) = 3e-033
Identities = 22/57 (38%), Positives = 30/57 (52%)
Frame = +3 / -3
Query: 639 WTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTYQATKNF 809
W M R+WG W LTG++L+F V T + +V P WQFG+TY + F
Sbjct: 250 WIQMSRNWGANWQALSGLTGQALSFAVTTTGGQYIQFLNVAPTWWQFGQTYSTNQQF 80
Score = 33.1 bits (66), Expect(4) = 3e-033
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3 / -3
Query: 276 YGTLTAAVGPSLYTNGTGCGACYEL 350
YG AA+ +L+ +G CG CY +
Sbjct: 664 YGVTNAALSQTLFNDGASCGQCYTI 590
Score = 25.4 bits (49), Expect(4) = 3e-033
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +3 / -3
Query: 357 PKGTVVVTATNEAPP 401
P TV VTATN PP
Sbjct: 550 PGNTVTVTATNLCPP 506
>gb|CW159464.1|CW159464 104_565_11149372_116_36410_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11149372, DNA
sequence
Length = 679
Score = 89.0 bits (188), Expect(3) = 5e-033
Identities = 33/68 (48%), Positives = 50/68 (73%)
Frame = +3 / -2
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HFD++ PA+ I +AGI+P+ Y++V C R GG+R++I G+Q++ V + NVGG+G V
Sbjct: 378 HFDMSQPAWEHIGVVQAGIIPVLYQQVRCTRTGGVRFSIAGSQYFLLVNIQNVGGSGAVG 199
Query: 606 ALWVKGNK 629
A WVKG+K
Sbjct: 198 AAWVKGDK 175
Score = 51.5 bits (106), Expect(3) = 5e-033
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = +3 / -2
Query: 639 WTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTYQATKN 806
W M R+WG W L G+ L+F V T + +V P WQFG T+ +N
Sbjct: 168 WIQMSRNWGANWQALSGLVGQGLSFAVTTTGGQYLQFMYVVPGWWQFGMTFGTNRN 1
Score = 44.6 bits (91), Expect(3) = 5e-033
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +3 / -2
Query: 240 GACGYKGELGKDYGTLTAAVGPSLYTNGTGCGACY 344
GACGY YG AA+ +L+ NG CG CY
Sbjct: 618 GACGYGNLYNAGYGINNAALSQTLFNNGASCGQCY 514
>gb|CW214676.1|CW214676 104_646_11194139_148_37052_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11194139, DNA
sequence
Length = 640
Score = 82.2 bits (173), Expect(3) = 3e-032
Identities = 29/68 (42%), Positives = 48/68 (70%)
Frame = +3 / +1
Query: 423 EHFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDV 602
+HFD++ P++ KI GIVP+ Y++V+C R GG+R+TI GN+++ V + NV G G +
Sbjct: 277 QHFDMSQPSWEKIGVYSGGIVPVFYQRVSCSRTGGVRFTINGNRYFKLVLIFNVAGPGSI 456
Query: 603 VALWVKGN 626
A+ +KG+
Sbjct: 457 SAVQIKGS 480
Score = 51.9 bits (107), Expect(3) = 3e-032
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +3 / +1
Query: 639 WTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKT 788
W M R+WG W DLT +S++FRV + R ++V +WQ G+T
Sbjct: 490 WITMSRNWGANWQANSDLTRQSISFRVTATNGRFLEFYNVAGSNWQLGQT 639
Score = 48.3 bits (99), Expect(3) = 3e-032
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +3 / +1
Query: 240 GACGYKGELGKDYGTLTAAVGPSLYTNGTGCGACYELK 353
GACGY YGT TAA+ +++ G CG CY++K
Sbjct: 40 GACGYGNLYSAGYGTDTAALSLAMFNGGAACGECYQVK 153
>gb|CW230206.1|CW230206 104_671_11207725_116_37267_049 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11207725, DNA
sequence
Length = 531
Score = 140 bits (301), Expect = 3e-032
Identities = 50/108 (46%), Positives = 74/108 (68%)
Frame = +3 / -2
Query: 486 PITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVVALWVKGNKRVKWTPMKRSWG 665
P+ YR+V+C+R GGIR+ I+G+ ++ V +TNVGGAG V A W+ G W M R+WG
Sbjct: 530 PVNYRRVSCQRSGGIRFAISGHDYFDLVTITNVGGAGAVAAAWIMGTGGTDWLAMSRNWG 351
Query: 666 QLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTYQATKNF 809
+ W + +LTG++L+F+V T D + + +V P +WQFG TYQA+ NF
Sbjct: 350 ENWQSGANLTGKALSFKVQTDDGKVVVADNVAPANWQFGSTYQASVNF 207
>gb|CX611078.1|CX611078 ANR1_22_B08.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_22_B08_A002 5', mRNA sequence
Length = 605
Score = 100 bits (212), Expect(5) = 3e-032
Identities = 38/67 (56%), Positives = 54/67 (80%)
Frame = +3 / +2
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HFD+ PAFL+IA+ +AGIVP+ YR+V C +KGGIR+TI G+ +++ V VTNV GAGDV
Sbjct: 329 HFDMAQPAFLQIAQYRAGIVPVAYRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDVQ 508
Query: 606 ALWVKGN 626
++ +KG+
Sbjct: 509 SVSIKGS 529
Score = 33.6 bits (67), Expect(5) = 3e-032
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3 / +2
Query: 639 WTPMKRSWGQLWTTEVDLTGES 704
W PM R+WGQ W + L G+S
Sbjct: 539 WQPMSRNWGQNWQSNSLLDGQS 604
Score = 27.2 bits (53), Expect(5) = 3e-032
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3 / +2
Query: 177 WTDGHATYYGGRD 215
W HAT+YGG D
Sbjct: 143 WQSAHATFYGGGD 181
Score = 26.7 bits (52), Expect(5) = 3e-032
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3 / +2
Query: 231 TDSGACGYKGELGKDYGTLT 290
T GACGY YGT+T
Sbjct: 191 TMGGACGYGNMYSTGYGTIT 250
Score = 25.4 bits (49), Expect(5) = 3e-032
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3 / +2
Query: 363 GTVVVTATNEAPP 401
GT+ VTATN PP
Sbjct: 239 GTITVTATNFCPP 277
>gb|CW409489.1|CW409489 fsbb001f103n01f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f103n01, DNA
sequence
Length = 667
Score = 87.2 bits (184), Expect(3) = 3e-032
Identities = 31/68 (45%), Positives = 49/68 (72%)
Frame = +3 / -1
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HFD++ PA+ I AG+VP+ Y++V C R GG+R+++ G+Q++ V + N+GG+G V
Sbjct: 337 HFDMSQPAWEHIGIYSAGVVPVLYQQVKCSRTGGVRFSLAGSQYFLLVNIQNLGGSGSVG 158
Query: 606 ALWVKGNK 629
A WVKG+K
Sbjct: 157 AAWVKGDK 134
Score = 53.8 bits (111), Expect(3) = 3e-032
Identities = 19/40 (47%), Positives = 23/40 (57%)
Frame = +3 / -1
Query: 225 DTTDSGACGYKGELGKDYGTLTAAVGPSLYTNGTGCGACY 344
DT GACGY YG AA+GP+L+ +G CG CY
Sbjct: 592 DTRTGGACGYDNLYNAGYGVNNAALGPTLFNDGASCGQCY 473
Score = 41.4 bits (84), Expect(3) = 3e-032
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +3 / -1
Query: 639 WTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTP 764
W M R+WG W L G+ L+F V T + W+V P
Sbjct: 127 WIQMSRNWGANWQALAGLVGQGLSFAVTTTGGQYIQFWNVVP 2
>gb|CW416746.1|CW416746 fsbb001f117h02f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f117h02, DNA
sequence
Length = 725
Score = 87.2 bits (184), Expect(3) = 3e-032
Identities = 31/68 (45%), Positives = 49/68 (72%)
Frame = +3 / -2
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HFD++ PA+ I AG+VP+ Y++V C R GG+R+++ G+Q++ V + N+GG+G V
Sbjct: 544 HFDMSQPAWEHIGIYSAGVVPVLYQQVKCSRTGGVRFSLAGSQYFLLVNIQNLGGSGSVG 365
Query: 606 ALWVKGNK 629
A WVKG+K
Sbjct: 364 AAWVKGDK 341
Score = 65.7 bits (137), Expect(3) = 3e-032
Identities = 24/57 (42%), Positives = 31/57 (54%)
Frame = +3 / -2
Query: 639 WTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTYQATKNF 809
W M R+WG W L G+ L+F V T + W+V P WQFG+TY T+NF
Sbjct: 334 WIQMSRNWGANWQALAGLVGQGLSFAVTTTGGQYIQFWNVVPGWWQFGQTYSTTQNF 164
Score = 29.5 bits (58), Expect(3) = 3e-032
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +3 / -2
Query: 300 GPSLYTNGTGCGACY 344
GP+L+ +G CG CY
Sbjct: 724 GPTLFNDGASCGQCY 680
>gb|CD204043.1|CD204043 HS1_3_A10.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_3_A10_A012 5', mRNA sequence
Length = 632
Score = 85.4 bits (180), Expect(4) = 3e-031
Identities = 32/55 (58%), Positives = 44/55 (80%)
Frame = +3 / +1
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGG 590
HFD+ PAFL+IA+ +AGIVP+ YR+V C +KGGIR+TI G+ +++ V VTNV G
Sbjct: 466 HFDMAQPAFLQIAQYRAGIVPVAYRRVPCVKKGGIRFTINGHSYFNLVLVTNVAG 630
Score = 54.7 bits (113), Expect(4) = 3e-031
Identities = 20/41 (48%), Positives = 26/41 (63%)
Frame = +3 / +1
Query: 231 TDSGACGYKGELGKDYGTLTAAVGPSLYTNGTGCGACYELK 353
T GACGY YGT TAA+ +L+ +G CG+CYEL+
Sbjct: 223 TMGGACGYGNMYSTGYGTNTAALSTALFNDGAACGSCYELR 345
Score = 27.2 bits (53), Expect(4) = 3e-031
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3 / +1
Query: 177 WTDGHATYYGGRD 215
W HAT+YGG D
Sbjct: 175 WQSAHATFYGGGD 213
Score = 25.4 bits (49), Expect(4) = 3e-031
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3 / +1
Query: 363 GTVVVTATNEAPP 401
GT+ VTATN PP
Sbjct: 376 GTITVTATNFCPP 414
>gb|CN127175.1|CN127175 RHOH1_21_B02.g3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_21_B02_A002 5', mRNA sequence
Length = 816
Score = 87.2 bits (184), Expect(3) = 4e-031
Identities = 31/68 (45%), Positives = 49/68 (72%)
Frame = +3 / +3
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HFD++ PA+ I AG+VP+ Y++V C R GG+R+++ G+Q++ V + N+GG+G V
Sbjct: 477 HFDMSQPAWEHIGIYSAGVVPVLYQQVKCSRTGGVRFSLAGSQYFLLVNIQNLGGSGSVG 656
Query: 606 ALWVKGNK 629
A WVKG+K
Sbjct: 657 AAWVKGDK 680
Score = 50.6 bits (104), Expect(3) = 4e-031
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +3 / +3
Query: 231 TDSGACGYKGELGKDYGTLTAAVGPSLYTNGTGCGACY 344
T GACGY YG AA+GP+L+ +G CG CY
Sbjct: 228 TMGGACGYDNLYNAGYGVNNAALGPTLFNDGASCGQCY 341
Score = 41.4 bits (84), Expect(3) = 4e-031
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +3 / +3
Query: 639 WTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTP 764
W M R+WG W L G+ L+F V T + W+V P
Sbjct: 687 WIQMSRNWGANWQALAGLVGQGLSFAVTTTGGQYIQFWNVVP 812
>gb|CW079162.1|CW079162 104_398_10899280_114_32367_050 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10899280, DNA
sequence
Length = 685
Score = 136 bits (292), Expect = 5e-031
Identities = 53/129 (41%), Positives = 77/129 (59%)
Frame = +3 / +1
Query: 423 EHFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDV 602
+HFD+ PA+ +I + GIVP+ +R+V C R+GG+R+T++G ++ V VTNV GAG V
Sbjct: 64 QHFDMAQPAWERIGVYQGGIVPVLFRRVPCRRRGGVRFTVSGRDYFELVLVTNVAGAGAV 243
Query: 603 VALWVKGNKRVKWTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFG 782
A+ V+G W PM R+WG W + L G+ L+FRV D + V P W FG
Sbjct: 244 RAMDVRGTSSAGWMPMSRNWGANWQSLAYLNGQGLSFRVTADDGQTVVFADVVPPSWTFG 423
Query: 783 KTYQATKNF 809
+TY + F
Sbjct: 424 QTYASRLQF 450
>gb|CW126910.1|CW126910 104_507_11113147_148_34730_068 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11113147, DNA
sequence
Length = 521
Score = 136 bits (292), Expect = 5e-031
Identities = 53/129 (41%), Positives = 77/129 (59%)
Frame = +3 / -3
Query: 423 EHFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDV 602
+HFD+ PA+ +I + GIVP+ +R+V C R+GG+R+T++G ++ V VTNV GAG V
Sbjct: 507 QHFDMAQPAWERIGVYQGGIVPVLFRRVPCRRRGGVRFTVSGRDYFELVLVTNVAGAGAV 328
Query: 603 VALWVKGNKRVKWTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFG 782
A+ V+G W PM R+WG W + L G+ L+FRV D + V P W FG
Sbjct: 327 RAMDVRGTSSAGWMPMSRNWGANWQSLAYLNGQGLSFRVTADDGQTVVFADVVPPSWTFG 148
Query: 783 KTYQATKNF 809
+TY + F
Sbjct: 147 QTYASRLQF 121
>gb|CX607022.1|CX607022 ANR1_6_F04.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_6_F04_A002 3', mRNA sequence
Length = 718
Score = 84.0 bits (177), Expect(2) = 2e-030
Identities = 34/68 (50%), Positives = 49/68 (72%)
Frame = +3 / +1
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HF L I +F KIA KAGI+PI YR+V C R+GG+R+++ G + V ++NVGGAGDV
Sbjct: 13 HFLLPIQSFEKIALWKAGIMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVR 192
Query: 606 ALWVKGNK 629
++ +KG +
Sbjct: 193 SVKIKGTE 216
Score = 70.7 bits (148), Expect(2) = 2e-030
Identities = 22/51 (43%), Positives = 36/51 (70%)
Frame = +3 / +1
Query: 639 WTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTY 791
W M R+WGQ+W D+ G+ L+F + ++D + TS++V P+DW++GKTY
Sbjct: 223 WLSMGRNWGQVWHINCDMRGQPLSFELSSSDGKTLTSFNVVPKDWEYGKTY 375
>gb|CN146258.1|CN146258 WOUND1_39_D07.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_39_D07_A002 3', mRNA sequence
Length = 686
Score = 84.0 bits (177), Expect(2) = 2e-030
Identities = 34/68 (50%), Positives = 49/68 (72%)
Frame = +3 / +2
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HF L I +F KIA KAGI+PI YR+V C R+GG+R+++ G + V ++NVGGAGDV
Sbjct: 11 HFLLPIQSFEKIALWKAGIMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVR 190
Query: 606 ALWVKGNK 629
++ +KG +
Sbjct: 191 SVKIKGTE 214
Score = 70.7 bits (148), Expect(2) = 2e-030
Identities = 22/51 (43%), Positives = 36/51 (70%)
Frame = +3 / +2
Query: 639 WTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTY 791
W M R+WGQ+W D+ G+ L+F + ++D + TS++V P+DW++GKTY
Sbjct: 221 WLSMGRNWGQVWHINCDMRGQPLSFELSSSDGKTLTSFNVVPKDWEYGKTY 373
>gb|CN127089.1|CN127089 RHOH1_21_B02.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_21_B02_A002 3', mRNA sequence
Length = 847
Score = 87.2 bits (184), Expect(2) = 5e-030
Identities = 31/68 (45%), Positives = 49/68 (72%)
Frame = +3 / +2
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HFD++ PA+ I AG+VP+ Y++V C R GG+R+++ G+Q++ V + N+GG+G V
Sbjct: 35 HFDMSQPAWEHIGIYSAGVVPVLYQQVKCSRTGGVRFSLAGSQYFLLVNIQNLGGSGSVG 214
Query: 606 ALWVKGNK 629
A WVKG+K
Sbjct: 215 AAWVKGDK 238
Score = 65.7 bits (137), Expect(2) = 5e-030
Identities = 24/57 (42%), Positives = 31/57 (54%)
Frame = +3 / +2
Query: 639 WTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTYQATKNF 809
W M R+WG W L G+ L+F V T + W+V P WQFG+TY T+NF
Sbjct: 245 WIQMSRNWGANWQALAGLVGQGLSFAVTTTGGQYIQFWNVVPGWWQFGQTYSTTQNF 415
>gb|CN139792.1|CN139792 OX1_24_D09.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_24_D09_A002 3', mRNA sequence
Length = 664
Score = 131 bits (281), Expect = 2e-029
Identities = 49/132 (37%), Positives = 80/132 (60%)
Frame = +3 / +1
Query: 414 QKGEHFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGA 593
Q HFD+ PAF KI GI+P+ Y++V C ++GG+R+++ G+ +++ V VTNV A
Sbjct: 43 QHRPHFDMAQPAFEKIGVYSGGIIPVMYKRVPCVKRGGVRFSVNGHDYFNLVLVTNVAAA 222
Query: 594 GDVVALWVKGNKRVKWTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDW 773
G + ++ VK + W+PM R+WG W + LTG+ L+FR+ D + V P+ W
Sbjct: 223 GSIKSMEVKTSNSSNWSPMARNWGANWHSLAYLTGQMLSFRLTDTDGQTIEFTDVVPQGW 402
Query: 774 QFGKTYQATKNF 809
+FG+T+ + F
Sbjct: 403 KFGQTFASKLQF 438
>gb|CW246309.1|CW246309 104_707_11221289_116_35084_077 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221289, DNA
sequence
Length = 616
Score = 99.6 bits (211), Expect(2) = 1e-028
Identities = 37/65 (56%), Positives = 51/65 (78%)
Frame = +3 / +1
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HFDL+ PAF+K+A+ +AGIVP+ YR+V C R+GG+R+ + GN ++ V NVGGAGDVV
Sbjct: 286 HFDLSKPAFMKMAQWRAGIVPVMYRRVPCVRRGGLRFALQGNPYWLLAYVMNVGGAGDVV 465
Query: 606 ALWVK 620
+WVK
Sbjct: 466 EMWVK 480
Score = 51.5 bits (106), Expect(2) = 1e-028
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = +3 / +1
Query: 240 GACGYKGELGKDYGTLTAAVGPSLYTNGTGCGACYELK 353
GACGY YGT TAA+ +L+ +G GCG CY+++
Sbjct: 49 GACGYGNLYATGYGTDTAALSTTLFKDGHGCGTCYQIR 162
>gb|CW306553.1|CW306553 104_792_11466904_148_35716_060 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11466904, DNA
sequence
Length = 694
Score = 89.0 bits (188), Expect(3) = 3e-028
Identities = 33/68 (48%), Positives = 50/68 (73%)
Frame = +3 / -2
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HFD++ PA+ I +AGI+P+ Y++V C R GG+R++I G+Q++ V + NVGG+G V
Sbjct: 513 HFDMSQPAWEHIGVVQAGIIPVLYQQVRCTRTGGVRFSIAGSQYFLLVNIQNVGGSGAVG 334
Query: 606 ALWVKGNK 629
A WVKG+K
Sbjct: 333 AAWVKGDK 310
Score = 54.2 bits (112), Expect(3) = 3e-028
Identities = 21/57 (36%), Positives = 28/57 (49%)
Frame = +3 / -2
Query: 639 WTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTYQATKNF 809
W M R+WG W L G+ L+F V T + +V P WQFG T+ +NF
Sbjct: 303 WIQMSRNWGANWQALSGLVGQGLSFAVTTTGGQYLQFMYVVPGWWQFGMTFGTNRNF 133
Score = 25.8 bits (50), Expect(3) = 3e-028
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +3 / -2
Query: 306 SLYTNGTGCGACY 344
+L+ NG CG CY
Sbjct: 687 TLFNNGASCGQCY 649
>gb|CL177978.1|CL177978 104_385_10894229_116_31914_293 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10894229, DNA
sequence
Length = 704
Score = 125 bits (268), Expect = 1e-027
Identities = 48/101 (47%), Positives = 68/101 (67%)
Frame = +3 / +1
Query: 501 KVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVVALWVKGNKRVKWTPMKRSWGQLWTT 680
+VAC +KGGIR+TI G+ +++ V VTNVGGAGDV A+ VKG + W + R+WGQ W +
Sbjct: 139 RVACNKKGGIRFTINGHSYFNLVLVTNVGGAGDVHAVAVKGERSAGWQALSRNWGQNWQS 318
Query: 681 EVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTYQATK 803
L G++L+FRV T+D R S + PR W FG+T+ +
Sbjct: 319 NTLLDGQALSFRVTTSDGRSVVSNNAAPRGWAFGQTFSGAQ 441
>gb|CW325048.1|CW325048 104_819_11477484_116_35915_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11477484, DNA
sequence
Length = 612
Score = 125 bits (268), Expect = 1e-027
Identities = 48/101 (47%), Positives = 68/101 (67%)
Frame = +3 / +1
Query: 501 KVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVVALWVKGNKRVKWTPMKRSWGQLWTT 680
+VAC +KGGIR+TI G+ +++ V VTNVGGAGDV A+ VKG + W + R+WGQ W +
Sbjct: 46 RVACNKKGGIRFTINGHSYFNLVLVTNVGGAGDVHAVAVKGERSAGWQALSRNWGQNWQS 225
Query: 681 EVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTYQATK 803
L G++L+FRV T+D R S + PR W FG+T+ +
Sbjct: 226 NTLLDGQALSFRVTTSDGRSVVSNNAAPRGWAFGQTFSGAQ 348
>gb|CW426483.1|CW426483 fsbb001f137o10k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f137o10, DNA
sequence
Length = 727
Score = 125 bits (268), Expect = 1e-027
Identities = 48/101 (47%), Positives = 68/101 (67%)
Frame = +3 / +3
Query: 501 KVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVVALWVKGNKRVKWTPMKRSWGQLWTT 680
+VAC +KGGIR+TI G+ +++ V VTNVGGAGDV A+ VKG + W + R+WGQ W +
Sbjct: 33 RVACNKKGGIRFTINGHSYFNLVLVTNVGGAGDVHAVAVKGERSAGWQALSRNWGQNWQS 212
Query: 681 EVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTYQATK 803
L G++L+FRV T+D R S + PR W FG+T+ +
Sbjct: 213 NTLLDGQALSFRVTTSDGRSVVSNNAAPRGWAFGQTFSGAQ 335
>gb|CW372792.1|CW372792 fsbb001f048n17k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f048n17, DNA
sequence
Length = 683
Score = 89.0 bits (188), Expect(2) = 4e-027
Identities = 33/68 (48%), Positives = 50/68 (73%)
Frame = +3 / +3
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HFD++ PA+ I +AGI+P+ Y++V C R GG+R++I G+Q++ V + NVGG+G V
Sbjct: 12 HFDMSQPAWEHIGVVQAGIIPVLYQQVRCTRTGGVRFSIAGSQYFLLVNIQNVGGSGAVG 191
Query: 606 ALWVKGNK 629
A WVKG+K
Sbjct: 192 AAWVKGDK 215
Score = 54.2 bits (112), Expect(2) = 4e-027
Identities = 21/57 (36%), Positives = 28/57 (49%)
Frame = +3 / +3
Query: 639 WTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTYQATKNF 809
W M R+WG W L G+ L+F V T + +V P WQFG T+ +NF
Sbjct: 222 WIQMSRNWGANWQALSGLVGQGLSFAVTTTGGQYLQFMYVVPGWWQFGMTFGTNRNF 392
>gb|CN139871.1|CN139871 OX1_24_D09.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_24_D09_A002 5', mRNA sequence
Length = 727
Score = 76.2 bits (160), Expect(4) = 5e-027
Identities = 28/69 (40%), Positives = 45/69 (65%)
Frame = +3 / +1
Query: 414 QKGEHFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGA 593
Q HFD+ PAF KI GI+P+ Y++V C ++GG+R+++ G+ + + V VTNV A
Sbjct: 511 QHRPHFDMAQPAFEKIGVYSGGIIPVMYKRVPCVKRGGVRFSVNGHDYINLVLVTNVAAA 690
Query: 594 GDVVALWVK 620
G + ++ VK
Sbjct: 691 GSIKSMEVK 717
Score = 49.6 bits (102), Expect(4) = 5e-027
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = +3 / +1
Query: 231 TDSGACGYKGELGKDYGTLTAAVGPSLYTNGTGCGACYEL 350
T GACGY + YGT TAA+ L+ +G CG CY++
Sbjct: 274 TMGGACGYGNLYSQGYGTRTAALSTVLFNDGASCGQCYKI 393
Score = 27.2 bits (53), Expect(4) = 5e-027
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3 / +1
Query: 177 WTDGHATYYGGRD 215
W HAT+YGG D
Sbjct: 226 WLKAHATFYGGAD 264
Score = 24.9 bits (48), Expect(4) = 5e-027
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3 / +1
Query: 357 PKGTVVVTATNEAPPPVSGQKG 422
P TV VTATN PP ++ +G
Sbjct: 433 PGVTVTVTATNFCPPNMALPEG 498
>gb|CF429238.1|CF429238 PH1_20_C06.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_20_C06_A002 5', mRNA sequence
Length = 744
Score = 82.2 bits (173), Expect(3) = 2e-026
Identities = 29/68 (42%), Positives = 48/68 (70%)
Frame = +3 / +3
Query: 423 EHFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDV 602
+HFD++ P++ KI GIVP+ Y++V+C R GG+R+TI GN+++ V + NV G G +
Sbjct: 459 QHFDMSQPSWEKIGVYSGGIVPVFYQRVSCSRTGGVRFTINGNRYFKLVLIFNVAGPGSI 638
Query: 603 VALWVKGN 626
A+ +KG+
Sbjct: 639 SAVQIKGS 662
Score = 49.2 bits (101), Expect(3) = 2e-026
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +3 / +3
Query: 231 TDSGACGYKGELGKDYGTLTAAVGPSLYTNGTGCGACYELK 353
T GACGY YGT TAA+ +++ G CG CY++K
Sbjct: 213 TMGGACGYGNLYSAGYGTDTAALSLAMFNGGAACGECYQVK 335
Score = 31.8 bits (63), Expect(3) = 2e-026
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3 / +3
Query: 639 WTPMKRSWGQLWTTEVDLTGESLT 710
W M R+WG W DLT +S++
Sbjct: 672 WITMSRNWGANWQANSDLTRQSIS 743
>gb|CW204094.1|CW204094 104_632_11186356_148_36919_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11186356, DNA
sequence
Length = 698
Score = 83.5 bits (176), Expect(2) = 3e-026
Identities = 29/66 (43%), Positives = 46/66 (69%)
Frame = +3 / -3
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HFD++ P++ KI + GI+P+ Y++V C R GG+R+ I G+ ++ V + N+GG+G V
Sbjct: 651 HFDMSQPSWEKIGVVQGGIIPVLYQQVKCSRSGGVRFNIAGSSYFLLVNIQNLGGSGSVG 472
Query: 606 ALWVKG 623
A WVKG
Sbjct: 471 AAWVKG 454
Score = 57.0 bits (118), Expect(2) = 3e-026
Identities = 22/57 (38%), Positives = 30/57 (52%)
Frame = +3 / -3
Query: 639 WTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTYQATKNF 809
W M R+WG W LTG++L+F V T + +V P WQFG+TY + F
Sbjct: 441 WIQMSRNWGANWQALSGLTGQALSFAVTTTGGQYIQFLNVAPTWWQFGQTYSTNQQF 271
>gb|CX607108.1|CX607108 ANR1_6_F04.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_6_F04_A002 5', mRNA sequence
Length = 794
Score = 84.0 bits (177), Expect(3) = 4e-026
Identities = 34/68 (50%), Positives = 49/68 (72%)
Frame = +3 / +1
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HF L I +F KIA KAGI+PI YR+V C R+GG+R+++ G + V ++NVGGAGDV
Sbjct: 508 HFLLPIQSFEKIALWKAGIMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVR 687
Query: 606 ALWVKGNK 629
++ +KG +
Sbjct: 688 SVKIKGTE 711
Score = 41.8 bits (85), Expect(3) = 4e-026
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3 / +1
Query: 240 GACGYKGELGKDYGTLTAAVGPSLYTNGTGCGACYELK 353
GACG+ YG T + +L+ G CG CYE+K
Sbjct: 271 GACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVK 384
Score = 36.3 bits (73), Expect(3) = 4e-026
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3 / +1
Query: 639 WTPMKRSWGQLWTTEVDLTGESLTF 713
W M R+WGQ+W D+ G+ L+F
Sbjct: 718 WLSMGRNWGQVWHINCDMRGQPLSF 792
>gb|CW174639.1|CW174639 104_586_11157513_148_36559_033 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11157513, DNA
sequence
Length = 637
Score = 86.3 bits (182), Expect(2) = 4e-026
Identities = 31/68 (45%), Positives = 47/68 (69%)
Frame = +3 / -2
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HFD++ PA+ KI GI+P+ Y++V C R GG+R++I GN ++ V + N+ G+G V
Sbjct: 564 HFDMSQPAWEKIGIYSGGIIPVQYQQVKCWRNGGVRFSIAGNYYFLLVNIQNLAGSGSVA 385
Query: 606 ALWVKGNK 629
A WVKG+K
Sbjct: 384 AAWVKGDK 361
Score = 53.8 bits (111), Expect(2) = 4e-026
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = +3 / -2
Query: 639 WTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTYQATKNF 809
W M R+WG W L G+ L+F V + +V P WQFG T+ +NF
Sbjct: 354 WIQMSRNWGANWQAHAGLVGQGLSFAVTSTGGHYIQFLNVVPGWWQFGMTFNTNQNF 184
>gb|CW126001.1|CW126001 104_506_11112648_148_34725_088 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11112648, DNA
sequence
Length = 611
Score = 82.6 bits (174), Expect(3) = 4e-026
Identities = 30/68 (44%), Positives = 48/68 (70%)
Frame = +3 / -1
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HFD+ PA+ KI GI+P+ YR+V+C RKGG+R+T+ G+ +++ V +TNV G G +
Sbjct: 500 HFDMAQPAWEKIGVFSGGIIPVIYRRVSCVRKGGVRFTVNGHDYFNLVLLTNVAGPGSIR 321
Query: 606 ALWVKGNK 629
A+ V+ +K
Sbjct: 320 AMDVRSSK 297
Score = 52.8 bits (109), Expect(3) = 4e-026
Identities = 21/59 (35%), Positives = 31/59 (52%)
Frame = +3 / -1
Query: 633 VKWTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTYQATKNF 809
V W M R+WG W + LTG+ L+FRV D + V P W+FG+++ + F
Sbjct: 290 VDWMHMARNWGANWHSLRYLTGQGLSFRVTVTDGQTIVFADVVPPKWRFGQSFSSKLQF 114
Score = 22.1 bits (42), Expect(3) = 4e-026
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3 / -1
Query: 357 PKGTVVVTATNEAPP 401
P +V VTATN PP
Sbjct: 590 PGVSVTVTATNFCPP 546
>gb|CN142714.1|CN142714 WOUND1_11_F01.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_11_F01_A002 5', mRNA sequence
Length = 665
Score = 80.3 bits (169), Expect(3) = 2e-025
Identities = 29/53 (54%), Positives = 42/53 (79%)
Frame = +3 / +1
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNV 584
HFDL +P FL IAE +AGIVP++YR+V C + GG+R+TI G ++++ V +TNV
Sbjct: 502 HFDLAMPMFLHIAEYRAGIVPVSYRRVPCRKSGGVRFTINGFRYFNLVLITNV 660
Score = 50.6 bits (104), Expect(3) = 2e-025
Identities = 19/41 (46%), Positives = 24/41 (58%)
Frame = +3 / +1
Query: 231 TDSGACGYKGELGKDYGTLTAAVGPSLYTNGTGCGACYELK 353
T GACGY + YG AA+ +L+ G CGAC+ELK
Sbjct: 247 TMGGACGYGNLYSQGYGVNNAALSTALFNEGLSCGACFELK 369
Score = 28.1 bits (55), Expect(3) = 2e-025
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +3 / +1
Query: 156 GKFKAEPWTDGHATYYGGRD 215
G + W HAT+YGG D
Sbjct: 178 GVYGGGGWQSAHATFYGGSD 237
>gb|CW448128.1|CW448128 fsbb001f181j14k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f181j14, DNA
sequence
Length = 508
Score = 91.3 bits (193), Expect(2) = 3e-025
Identities = 32/66 (48%), Positives = 49/66 (74%)
Frame = +3 / +3
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HFD++ PA+LKI + GI+P+ Y++V C ++GG+R+TITG HY V ++NV G+G V
Sbjct: 309 HFDMSQPAWLKIGIYQGGIIPVLYQRVPCVKQGGVRFTITGFNHYELVLISNVAGSGSVA 488
Query: 606 ALWVKG 623
+ WV+G
Sbjct: 489 SAWVQG 506
Score = 47.8 bits (98), Expect(2) = 3e-025
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +3 / +3
Query: 240 GACGYKGELGKDYGTLTAAVGPSLYTNGTGCGACYEL 350
GACGY YG TAA+ LY +G CG CY++
Sbjct: 63 GACGYGNLYATGYGQYTAALSQVLYNDGASCGQCYQI 173
>gb|BI075831.1|BI075831 IP1_21_G05.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 646
Score = 78.0 bits (164), Expect(5) = 4e-025
Identities = 29/52 (55%), Positives = 41/52 (78%)
Frame = +3 / +3
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTN 581
HFD+ PAFL IA+ +AGIVP+ +R+V C +KGGIR+TI G+ +++ V VTN
Sbjct: 489 HFDMAEPAFLHIAQYRAGIVPVAFRRVPCVKKGGIRFTINGHSYFNLVLVTN 644
Score = 29.5 bits (58), Expect(5) = 4e-025
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +3 / +3
Query: 306 SLYTNGTGCGACYELK 353
+L+ +G CG+CYEL+
Sbjct: 321 ALFNDGAACGSCYELR 368
Score = 28.1 bits (55), Expect(5) = 4e-025
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +3 / +2
Query: 231 TDSGACGYKGELGKDYGTLTAAV 299
T GACGY YGT TAA+
Sbjct: 245 TMGGACGYGNLYSTGYGTNTAAL 313
Score = 27.2 bits (53), Expect(5) = 4e-025
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3 / +2
Query: 177 WTDGHATYYGGRD 215
W HAT+YGG D
Sbjct: 197 WQSAHATFYGGGD 235
Score = 25.4 bits (49), Expect(5) = 4e-025
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3 / +3
Query: 363 GTVVVTATNEAPP 401
GT+ VTATN PP
Sbjct: 399 GTITVTATNFCPP 437
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,023,275,728
Number of Sequences: 832831
Number of extensions: 14687534
Number of successful extensions: 202543
Number of sequences better than 1.0e-020: 86
length of database: 163,786,556
effective HSP length: 55
effective length of database: 117,980,851
effective search space used: 33506561684
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)