TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3147935.2.1
(711 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW381875.1|CW381875 fsbb001f063h19k0 Sorghum methylation... 211 3e-062
gb|CF487333.1|CF487333 POL1_43_D11.b1_A002 Pollen Sorghum b... 144 1e-033
gb|BG101797.1|BG101797 RHIZ2_22_E09.g1_A003 Rhizome2 (RHIZ2... 140 2e-032
gb|BM331533.1|BM331533 PIC1_72_D10.g1_A002 Pathogen-infecte... 137 2e-031
gb|BM329584.1|BM329584 PIC1_40_E09.g1_A002 Pathogen-infecte... 134 1e-030
gb|CW144377.1|CW144377 104_536_11137911_148_34962_056 Sorgh... 132 7e-030
gb|CW285991.1|CW285991 104_763_11410641_116_35511_039 Sorgh... 130 3e-029
gb|BF587532.1|BF587532 FM1_37_E11.g1_A003 Floral-Induced Me... 126 3e-028
gb|CN149194.1|CN149194 WOUND1_61_F10.b1_A002 Wounded leaves... 126 5e-028
gb|CF070980.1|CF070980 FE1_14_F12.g1_A002 Iron-deficient se... 125 6e-028
gb|CD234655.1|CD234655 SS1_17_C07.b1_A012 Salt-stressed see... 123 2e-027
gb|CN127460.1|CN127460 RHOH1_23_D06.b1_A002 Acid- and alkal... 123 2e-027
gb|CX612893.1|CX612893 GABR1_5_C04.b1_A002 GA- or brassinol... 123 2e-027
gb|CW285992.1|CW285992 104_763_11410641_148_35507_039 Sorgh... 115 9e-025
gb|CN140420.1|CN140420 OX1_36_B10.b1_A002 Oxidatively-stres... 107 2e-022
gb|CF480371.1|CF480371 POL1_65_H05.b1_A002 Pollen Sorghum b... 103 3e-021
>gb|CW381875.1|CW381875 fsbb001f063h19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f063h19, DNA
sequence
Length = 722
Score = 211 bits (456), Expect(4) = 3e-062
Identities = 80/91 (87%), Positives = 83/91 (91%)
Frame = -3 / +2
Query: 664 GKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIHYSGKLKP 485
GK +K WK SLPLGQ+ FYNRTLPLDHRWHV GLGHD SIGR+ELESASVIHYSGKLKP
Sbjct: 62 GKIQKLWKPGSLPLGQLTFYNRTLPLDHRWHVFGLGHDFSIGRNELESASVIHYSGKLKP 241
Query: 484 WLEISIPKYRGYWNRYLNYDNPHLQQCNIHG 392
WLEISIPKYR YWNRYLNYDNPHLQQCNIHG
Sbjct: 242 WLEISIPKYRDYWNRYLNYDNPHLQQCNIHG 334
Score = 165 bits (354), Expect(4) = 3e-047
Identities = 73/105 (69%), Positives = 79/105 (75%)
Frame = +3 / -3
Query: 351 QFYLANHLTRHRLYP*MLHCCKCGLS*LRYLFQ*PLYFGIEISNQGLSFPL*WMTEAXXX 530
+FYLANHLT LYP*MLHCCKCGLS*LRYLFQ* LYFGIEIS+QGLSFPL*WMTEA
Sbjct: 375 KFYLANHLTPIALYP*MLHCCKCGLS*LRYLFQ*SLYFGIEISSQGLSFPL*WMTEALSS 196
Query: 531 XXXXXXXXXXXXRTCHRWSRGSVRL*KTT*PSGRLXAFHXFSLLP 665
+TCHR SRGSV L*K +*PSG+L FH F +LP
Sbjct: 195 SFLPMLKSWPSPKTCHR*SRGSVLL*KVS*PSGKLPGFHNF*ILP 61
Score = 157 bits (337), Expect(3) = 8e-039
Identities = 74/106 (69%), Positives = 78/106 (73%)
Frame = -2 / +1
Query: 668 TGQK*EXVEGXKPATGSGCLLQPNAASGPPVACSRARS*LQHRKR*TRECLCHPLQWETQ 489
+GQ E +E K ATGS LLQ N ASG P+AC A * QH K+*T ECLCHPLQWETQ
Sbjct: 58 SGQNSEVMEARKLATGSAYLLQQNTASGSPMACLWAWP*FQHWKK*T*ECLCHPLQWETQ 237
Query: 488 TLVGDFYPKVQRLLEQVP*LR*PALAAVQHSRIEAMAGEVIRKVEL 351
TL GDFYPKVQRLLEQVP L * LAAVQHSRIE EVI KVEL
Sbjct: 238 TLAGDFYPKVQRLLEQVPQL**STLAAVQHSRIEGDGSEVICKVEL 375
Score = 122 bits (261), Expect(4) = 3e-039
Identities = 51/68 (75%), Positives = 58/68 (85%)
Frame = +2 / -2
Query: 461 LWDRNLQPGFEFPTVVDDRGTLEFISSDAGVMTEP*NMPPVVQRQRSVVEDNLTQWQASC 640
LWDRNLQPGFEFPTVVDDRGTL+FISS+A +M +P +MP V+QRQ SVV+ LTQWQAS
Sbjct: 265 LWDRNLQPGFEFPTVVDDRGTLKFISSNAEIMAKPKDMPSVIQRQCSVVKGKLTQWQASW 86
Query: 641 LPXLLTFA 664
LP LL FA
Sbjct: 85 LP*LLNFA 62
Score = 116 bits (248), Expect = 4e-025
Identities = 49/68 (72%), Positives = 49/68 (72%)
Frame = -1 / +3
Query: 663 AKVRXXGRXEACHWVRLSSTTERCLWTTGGMF*GSVMTPASEEMNSRVPLSSTTVGNSNP 484
AK R G EACHWV L TTE CLW T GM G M A EEMN RVPLSSTTVGNSNP
Sbjct: 63 AKFRSYGSQEACHWVSLPFTTEHCLWITDGMSLGLAMISALEEMNLRVPLSSTTVGNSNP 242
Query: 483 GWRFLSQS 460
GWRFLSQS
Sbjct: 243 GWRFLSQS 266
Score = 103 bits (220), Expect(2) = 4e-024
Identities = 42/65 (64%), Positives = 47/65 (72%)
Frame = +1 / -1
Query: 472 KSPTRV*VSHCSG*QRHSRVHLFRCWSHDRALEHATGGPEAAFGCRRQPDPVAGFXPSTX 651
KSP RV*VSHCSG*QRHS+VH F+C +H +A HA G PEA F C+R DPVA F S
Sbjct: 254 KSPARV*VSHCSG*QRHSQVHFFQC*NHGQAQRHAIGDPEAVFCCKR*ADPVASFLASIT 75
Query: 652 SHFCP 666
S FCP
Sbjct: 74 SEFCP 60
Score = 40.9 bits (83), Expect(4) = 3e-039
Identities = 18/25 (72%), Positives = 19/25 (76%)
Frame = +1 / -1
Query: 352 SSTLRITSPAIASIRECCTAASAGY 426
SSTL+ITS SIRECCTAAS Y
Sbjct: 374 SSTLQITSLPSPSIRECCTAASVDY 300
Score = 32.2 bits (64), Expect(4) = 3e-047
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +2 / -3
Query: 260 IANRASSNRNKTKKQQLALLIS 325
+ NR SSNRNK K+ Q A LIS
Sbjct: 462 VHNRVSSNRNKKKRHQPAQLIS 397
Score = 30.9 bits (61), Expect(4) = 3e-039
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +3 / -1
Query: 258 KLQIGHLATETKQKNNNLLS**V 326
K IG LATETK+K+ NLL+**V
Sbjct: 464 KYIIGCLATETKKKDINLLN**V 396
Score = 29.9 bits (59), Expect(4) = 3e-062
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = -3 / +1
Query: 325 TY*ESKLLFFCFVSVARCPI 266
TY* S+L+ F FVSVAR PI
Sbjct: 397 TY*LSRLMSFFFVSVARHPI 456
Score = 29.0 bits (57), Expect(2) = 4e-024
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2 / -2
Query: 284 RNKTKKQQLALLISYYSEVAYIPVLPCESPHPPSPLS 394
+ K KK+ + + VLPC+SPH PLS
Sbjct: 442 QQKQKKKTSTCSTNKFYGEVVYQVLPCKSPHSHRPLS 332
Score = 28.1 bits (55), Expect(4) = 3e-062
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2 / +3
Query: 224 KKEEQNRVHELQFH**Y 174
+KE+Q+++ ELQFH**+
Sbjct: 510 QKEQQHQIEELQFH**H 560
Score = 27.2 bits (53), Expect(4) = 3e-062
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = -2 / +1
Query: 173 TEGLTKVKPLANIIN 129
T+ LTKVKPLA IIN
Sbjct: 559 TKVLTKVKPLAYIIN 603
Score = 26.3 bits (51), Expect(4) = 3e-047
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3 / -3
Query: 129 IDNVS*WLDFCQTF 170
ID VS*W FCQ F
Sbjct: 603 IDYVS*WFYFCQNF 562
Score = 24.9 bits (48), Expect(4) = 3e-039
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = +1 / -1
Query: 127 LLIMLASGLTFVKPSV 174
LLIM ASG TFVK V
Sbjct: 605 LLIM*ASGFTFVKTLV 558
Score = 23.1 bits (44), Expect(3) = 8e-039
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -3 / +1
Query: 214 NKIEYTSYSFTSDT 173
N I+ SY+FTSDT
Sbjct: 520 NNIK*KSYNFTSDT 561
Score = 22.6 bits (43), Expect(3) = 8e-039
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -3 / +2
Query: 175 TLKV*QKSSH*LTLSI 128
TLK *QK +H*LT SI
Sbjct: 557 TLKF*QK*NH*LT*SI 604
Score = 22.6 bits (43), Expect(4) = 3e-047
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +3 / -2
Query: 234 TDCDY*QTK 260
TDCDY*Q K
Sbjct: 502 TDCDY*QKK 476
>gb|CF487333.1|CF487333 POL1_43_D11.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_43_D11_A002 3', mRNA sequence
Length = 661
Score = 144 bits (310), Expect = 1e-033
Identities = 48/96 (50%), Positives = 70/96 (72%)
Frame = -3 / +2
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH+W L + WK +LP G + FY T PLD WHVLGLG++ SI R E++SA+V+H
Sbjct: 116 YHKWQNLNEDRALWKLGTLPPGLLTFYKLTHPLDKSWHVLGLGYNPSIDRSEIDSAAVVH 295
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCNI 398
Y+G +KPWLE+++ KYR YW +Y+ YD+P+++ CN+
Sbjct: 296 YNGNMKPWLELAMTKYRPYWTKYIKYDHPYIRGCNL 403
>gb|BG101797.1|BG101797 RHIZ2_22_E09.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 591
Score = 140 bits (301), Expect = 2e-032
Identities = 47/96 (48%), Positives = 70/96 (72%)
Frame = -3 / +3
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH+W + ++ WK +LP G + FY T PLD WHVLGLG++ +I R E+++A+VIH
Sbjct: 45 YHKWQNMNENRLLWKLGTLPPGLLTFYKLTHPLDKSWHVLGLGYNPTIERSEIDNAAVIH 224
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCNI 398
Y+G +KPWLEI++ KYR YW +Y+NY++P++ C I
Sbjct: 225 YNGNMKPWLEIAMTKYRPYWTKYINYEHPYIHGCKI 332
>gb|BM331533.1|BM331533 PIC1_72_D10.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 596
Score = 137 bits (293), Expect = 2e-031
Identities = 45/94 (47%), Positives = 67/94 (71%)
Frame = -3 / +2
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH W L + K WK +LP G + FYN T PL+ WHVLGLG+D ++ E+++A+V+H
Sbjct: 5 YHYWQDLNEDRKLWKLGTLPPGLITFYNLTYPLNRTWHVLGLGYDPAVDIAEIDNAAVVH 184
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQC 404
Y+G KPWL+++I KY+ YW++Y++ DN H+Q C
Sbjct: 185 YNGNYKPWLDLAISKYKTYWSKYVDVDNSHVQHC 286
>gb|BM329584.1|BM329584 PIC1_40_E09.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 628
Score = 134 bits (288), Expect = 1e-030
Identities = 45/92 (48%), Positives = 66/92 (71%)
Frame = -3 / +3
Query: 670 QLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIHYSGKL 491
+L + WK +LP G + F+N+T PL WHVLGLG++ + ++E A+VIHY+G +
Sbjct: 6 KLNEDRSLWKLGTLPPGLITFWNKTFPLSRSWHVLGLGYNPHVNSRDIERAAVIHYNGNM 185
Query: 490 KPWLEISIPKYRGYWNRYLNYDNPHLQQCNIH 395
KPWLEI +PKYR YW++YL+YD L++CNI+
Sbjct: 186 KPWLEIGLPKYRSYWSKYLDYDQSFLRECNIN 281
>gb|CW144377.1|CW144377 104_536_11137911_148_34962_056 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11137911, DNA
sequence
Length = 622
Score = 132 bits (282), Expect = 7e-030
Identities = 44/83 (53%), Positives = 64/83 (77%)
Frame = -3 / +2
Query: 646 WKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIHYSGKLKPWLEISI 467
WK +LP G + FY T PLD WHVLGLG++ SI R E++SA+V+HY+G +KPWLE+++
Sbjct: 296 WKLGTLPPGLLTFYKLTHPLDKSWHVLGLGYNPSIDRSEIDSAAVVHYNGNMKPWLELAM 475
Query: 466 PKYRGYWNRYLNYDNPHLQQCNI 398
KYR YW +Y+ YD+P+++ CN+
Sbjct: 476 TKYRPYWTKYIKYDHPYIRGCNL 544
>gb|CW285991.1|CW285991 104_763_11410641_116_35511_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11410641, DNA
sequence
Length = 612
Score = 130 bits (278), Expect = 3e-029
Identities = 46/98 (46%), Positives = 69/98 (70%)
Frame = -3 / +2
Query: 691 TTYHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASV 512
T ++ F ++ WK +LP G + FY T PLD WHVLGLG++ +I R E+++A+V
Sbjct: 35 TLFYVLFV*NENRLLWKLGTLPPGLLTFYKLTHPLDKSWHVLGLGYNPTIERSEIDNAAV 214
Query: 511 IHYSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCNI 398
IHY+G +KPWLEI++ KYR YW +Y+NY++P++ C I
Sbjct: 215 IHYNGNMKPWLEIAMTKYRPYWTKYINYEHPYIHGCKI 328
>gb|BF587532.1|BF587532 FM1_37_E11.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 632
Score = 126 bits (270), Expect = 3e-028
Identities = 40/95 (42%), Positives = 67/95 (70%)
Frame = -3 / +1
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH W ++ WK +LP G + FY+ T PL+ WHVLGLG++ SI +E+ +A+V+H
Sbjct: 61 YHYWQNQNENRTLWKLGTLPXGLITFYSTTKPLEKSWHVLGLGYNPSISMEEIRNAAVVH 240
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCN 401
++G +KPWL+I + ++R W +Y++YD+ +++QCN
Sbjct: 241 FNGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQCN 345
>gb|CN149194.1|CN149194 WOUND1_61_F10.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_61_F10_A002 3', mRNA sequence
Length = 807
Score = 126 bits (269), Expect = 5e-028
Identities = 40/95 (42%), Positives = 67/95 (70%)
Frame = -3 / +2
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH W ++ WK +LP G + FY+ T PL+ WHVLGLG++ SI +E+ +A+V+H
Sbjct: 254 YHYWQNQNENRTLWKLGTLPPGLITFYSTTKPLERSWHVLGLGYNPSISMEEIRNAAVVH 433
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCN 401
++G +KPWL+I + ++R W +Y++YD+ +++QCN
Sbjct: 434 FNGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQCN 538
>gb|CF070980.1|CF070980 FE1_14_F12.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_14_F12_A002 5', mRNA sequence
Length = 692
Score = 125 bits (268), Expect = 6e-028
Identities = 40/95 (42%), Positives = 67/95 (70%)
Frame = -3 / -1
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH W ++ WK +LP G + FY+ T PL+ WHVLGLG++ SI +E+ +A+V+H
Sbjct: 596 YHYWQNQNENRTLWKLGTLPPGLITFYSTTKPLEKSWHVLGLGYNPSISMEEIRNAAVVH 417
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCN 401
++G +KPWL+I + ++R W +Y++YD+ +++QCN
Sbjct: 416 FNGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQCN 312
>gb|CD234655.1|CD234655 SS1_17_C07.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_17_C07_A012 3', mRNA sequence
Length = 683
Score = 123 bits (264), Expect = 2e-027
Identities = 42/97 (43%), Positives = 64/97 (65%)
Frame = -3 / +3
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH W + W+ +LP G + FY PLD RWHVLGLG+D I +ESA+V+H
Sbjct: 66 YHYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVH 245
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCNIH 395
Y+G +KPWL+++I +Y+ W RY+N +P++++C +H
Sbjct: 246 YNGNMKPWLKLAIRRYKYIWERYVNISHPYVRECMLH 356
>gb|CN127460.1|CN127460 RHOH1_23_D06.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_23_D06_A002 3', mRNA sequence
Length = 814
Score = 123 bits (264), Expect = 2e-027
Identities = 42/97 (43%), Positives = 64/97 (65%)
Frame = -3 / +1
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH W + W+ +LP G + FY PLD RWHVLGLG+D I +ESA+V+H
Sbjct: 187 YHYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVH 366
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCNIH 395
Y+G +KPWL+++I +Y+ W RY+N +P++++C +H
Sbjct: 367 YNGNMKPWLKLAIRRYKYIWERYVNISHPYVRECMLH 477
>gb|CX612893.1|CX612893 GABR1_5_C04.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_5_C04_A002 3', mRNA sequence
Length = 762
Score = 123 bits (264), Expect = 2e-027
Identities = 42/97 (43%), Positives = 64/97 (65%)
Frame = -3 / +1
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH W + W+ +LP G + FY PLD RWHVLGLG+D I +ESA+V+H
Sbjct: 145 YHYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVH 324
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCNIH 395
Y+G +KPWL+++I +Y+ W RY+N +P++++C +H
Sbjct: 325 YNGNMKPWLKLAIRRYKYIWERYVNISHPYVRECMLH 435
>gb|CW285992.1|CW285992 104_763_11410641_148_35507_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11410641, DNA
sequence
Length = 694
Score = 115 bits (245), Expect = 9e-025
Identities = 38/71 (53%), Positives = 56/71 (78%)
Frame = -3 / -1
Query: 610 FYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIHYSGKLKPWLEISIPKYRGYWNRYLN 431
FY T PLD WHVLGLG++ ++ R E+++A+VIHY+G +KPWLEI++ KYR YW +Y+N
Sbjct: 691 FYKLTHPLDKSWHVLGLGYNPTMXRSEIDNAAVIHYNGNMKPWLEIAMTKYRPYWTKYIN 512
Query: 430 YDNPHLQQCNI 398
Y++P++ C I
Sbjct: 511 YEHPYIHGCKI 479
>gb|CN140420.1|CN140420 OX1_36_B10.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_36_B10_A002 3', mRNA sequence
Length = 836
Score = 107 bits (228), Expect = 2e-022
Identities = 35/83 (42%), Positives = 56/83 (67%)
Frame = -3 / +3
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH W ++ WK +LP G + FY+ T PL+ WHVLGLG++ SI +E+ +A+V+H
Sbjct: 357 YHYWQNQNENRTLWKLGTLPPGLITFYSTTKPLEKSWHVLGLGYNPSISMEEIRNAAVVH 536
Query: 505 YSGKLKPWLEISIPKYRGYWNRY 437
++G +KPWL+I + ++R W +Y
Sbjct: 537 FNGNMKPWLDIGMNQFRHLWTKY 605
>gb|CF480371.1|CF480371 POL1_65_H05.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_65_H05_A002 3', mRNA sequence
Length = 430
Score = 103 bits (220), Expect = 3e-021
Identities = 34/63 (53%), Positives = 50/63 (79%)
Frame = -3 / +2
Query: 586 DHRWHVLGLGHDSSIGRDELESASVIHYSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQ 407
D WHVLGLG++ +I R E+++A+VIHY+G +KPWLEI++ KYR YW +Y+NY+ P++
Sbjct: 2 DKSWHVLGLGYNPTIERSEIDNAAVIHYNGNMKPWLEIAMTKYRPYWTKYINYEPPYIHG 181
Query: 406 CNI 398
C I
Sbjct: 182 CKI 190
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 723,900,041
Number of Sequences: 832831
Number of extensions: 8835102
Number of successful extensions: 66593
Number of sequences better than 1.0e-020: 20
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 21624090124
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)