TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115208.2.3
(672 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW070516.1|CW070516 104_321_10526807_1_30090 Sorghum met... 229 4e-086
gb|CW333518.1|CW333518 104_831_11481987_116_36043_006 Sorgh... 215 5e-073
gb|BG047687.1|BG047687 OV1_26_F01.b1_A002 Ovary 1 (OV1) Sor... 226 2e-058
gb|CF484496.1|CF484496 POL1_25_E03.g1_A002 Pollen Sorghum b... 210 1e-053
gb|BG048012.1|BG048012 OV1_26_F01.g1_A002 Ovary 1 (OV1) Sor... 195 6e-052
gb|CW333499.1|CW333499 104_831_11481987_148_36044_006 Sorgh... 204 8e-052
gb|CF484415.1|CF484415 POL1_25_E03.b1_A002 Pollen Sorghum b... 183 2e-048
gb|BF586098.1|BF586098 FM1_26_F08.g1_A003 Floral-Induced Me... 184 9e-046
gb|BF421494.1|BF421494 FM1_8_D12.g1_A003 Floral-Induced Mer... 181 1e-044
gb|CN129609.1|CN129609 RHOH1_36_H07.b3_A002 Acid- and alkal... 181 1e-044
gb|BF586907.1|BF586907 FM1_31_H11.g1_A003 Floral-Induced Me... 180 2e-044
gb|BG465293.1|BG465293 EM1_74_D12.g1_A002 Embryo 1 (EM1) So... 172 5e-042
gb|CX611383.1|CX611383 ANR1_24_G11.b1_A002 Anaerobic roots ... 171 9e-042
gb|CF480672.1|CF480672 POL1_67_E06.b1_A002 Pollen Sorghum b... 163 3e-039
gb|CX606430.1|CX606430 ANR1_3_A12.b1_A002 Anaerobic roots S... 162 5e-039
gb|CW347590.1|CW347590 fsbb001f007i24k0 Sorghum methylation... 150 2e-036
gb|CF486575.1|CF486575 POL1_38_B08.g1_A002 Pollen Sorghum b... 150 2e-035
gb|CF489723.1|CF489723 POL1_59_F09.b1_A002 Pollen Sorghum b... 147 2e-034
gb|CF489854.1|CF489854 POL1_61_B07.b1_A002 Pollen Sorghum b... 141 9e-033
gb|CW266285.1|CW266285 104_736_11232344_116_35282_032 Sorgh... 137 2e-031
gb|CW371735.1|CW371735 fsbb001f047f12k0 Sorghum methylation... 137 2e-031
gb|CW473222.1|CW473222 fsbb001f228i05k0 Sorghum methylation... 137 2e-031
gb|CF488326.1|CF488326 POL1_49_E06.b1_A002 Pollen Sorghum b... 137 2e-031
gb|CF482627.1|CF482627 POL1_8_D05.b1_A002 Pollen Sorghum bi... 133 3e-030
gb|BG412419.1|BG412419 OV2_33_H06.g1_A002 Ovary 2 (OV2) Sor... 131 1e-029
gb|CF486499.1|CF486499 POL1_38_B11.b1_A002 Pollen Sorghum b... 127 2e-028
gb|BG050704.1|BG050704 FM1_71_H08.g1_A003 Floral-Induced Me... 122 7e-027
gb|BG103595.1|BG103595 RHIZ2_38_E03.g1_A003 Rhizome2 (RHIZ2... 122 7e-027
gb|CW045891.1|CW045891 104_282_10509838_114_30229 Sorghum m... 117 2e-025
gb|BG239815.1|BG239815 OV1_29_D04.g1_A002 Ovary 1 (OV1) Sor... 113 3e-024
gb|CX607178.1|CX607178 ANR1_7_D05.b1_A002 Anaerobic roots S... 108 7e-023
gb|CW227956.1|CW227956 104_667_11206095_116_37239_054 Sorgh... 86 1e-022
gb|CW182759.1|CW182759 104_598_11164251_116_36667_010 Sorgh... 107 2e-022
gb|CW190148.1|CW190148 104_611_11174347_116_36749_070 Sorgh... 107 2e-022
gb|CW216844.1|CW216844 104_649_11195330_116_37124_001 Sorgh... 107 2e-022
>gb|CW070516.1|CW070516 104_321_10526807_1_30090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10526807, DNA
sequence
Length = 622
Score = 229 bits (495), Expect(2) = 4e-086
Identities = 91/105 (86%), Positives = 96/105 (91%)
Frame = +2 / -3
Query: 149 MGPGKWSPEVRKTYNLLDTVSRHTIQVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQ 328
MGPG+WSPE R TYNLLD VSRHTIQVYPRSWTAIMLTFDNAGMWSV SNIWERYYLGEQ
Sbjct: 350 MGPGQWSPEARVTYNLLDAVSRHTIQVYPRSWTAIMLTFDNAGMWSVRSNIWERYYLGEQ 171
Query: 329 FYISVVSPARSLRDEYNMPDNALRCGKVVGLPLPPSYAPAR*DDE 463
FYISV+SP SLRDEYNMPDN LR GKVVGLPLPPSY+ AR*+D+
Sbjct: 170 FYISVISPEHSLRDEYNMPDNDLRRGKVVGLPLPPSYSAAR*NDQ 36
Score = 207 bits (446), Expect(2) = 4e-078
Identities = 92/111 (82%), Positives = 93/111 (83%)
Frame = -3 / +3
Query: 478 GENEAFVILARGGVGRRQRQPHDLAAAEGVVGHVVLVAQ*SRRRDDADVELLPEVVPLPD 299
G VILARGGVGRRQRQPHDLAAAE VV HVVLVAQ RRDDADVELLPEVV LPD
Sbjct: 21 GPGACLVILARGGVGRRQRQPHDLAAAEVVVRHVVLVAQRVLRRDDADVELLPEVVALPD 200
Query: 298 VGMHAPHARVVERQHDCRP*PRVHLDRVPAHRVQQVVRLPHLRRPLPGAHP 146
VG APHARVVERQH+ RP*PRVHLDRVPAHRVQQVVR P LRRPLP HP
Sbjct: 201 VGPDAPHARVVERQHNRRP*PRVHLDRVPAHRVQQVVRHPRLRRPLPRPHP 353
Score = 172 bits (371), Expect(3) = 5e-051
Identities = 74/89 (83%), Positives = 80/89 (89%)
Frame = -1 / +1
Query: 414 TTLPQRRALSGMLYSSRSDRAGETTLM*NCSPR*YRSQMLECTLHMPALSNVSMIAVHDR 235
TTLP+RR+LSGMLYSSRS+ +GE TLM*NCSPR* RSQML+ TLHMPALSNVS+IAVHD
Sbjct: 85 TTLPRRRSLSGMLYSSRSECSGEMTLM*NCSPR**RSQMLDRTLHMPALSNVSIIAVHDL 264
Query: 234 GYTWIVCRLTVSSRLYVFLTSGDHFPGPI 148
GYTWIVCRLT SSRLYV L SGDH PGPI
Sbjct: 265 GYTWIVCRLTASSRLYVTLASGDHCPGPI 351
Score = 156 bits (335), Expect(2) = 9e-047
Identities = 64/76 (84%), Positives = 68/76 (89%)
Frame = +1 / -2
Query: 163 VVAGGEEDVQPAGHGEPAHDPGVPAVMDGNHADVRQRGHVERAFQHLGAVLPRGAVLHQR 342
VVAGGE DVQPAG GEPAHDPGVP VMDG++ADVRQRGHVER QHLGA+LPRGAVLHQR
Sbjct: 336 VVAGGEGDVQPAGRGEPAHDPGVPEVMDGDYADVRQRGHVERPVQHLGALLPRGAVLHQR 157
Query: 343 RLAGAITARRVQHARQ 390
LAGA+ ARRVQHA Q
Sbjct: 156 HLAGALAARRVQHAGQ 109
Score = 110 bits (234), Expect(2) = 4e-086
Identities = 42/49 (85%), Positives = 47/49 (95%)
Frame = +2 / -3
Query: 2 VPPAVNGPLHVIPNVITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVG 148
VPPAVNGPLHV+PNVITAEF TFIE+V ENPEKS+DS+H+DGYAFFGVG
Sbjct: 593 VPPAVNGPLHVVPNVITAEFGTFIEMVLENPEKSLDSIHLDGYAFFGVG 447
Score = 107 bits (229), Expect = 1e-022
Identities = 43/86 (50%), Positives = 45/86 (52%)
Frame = +3 / -1
Query: 222 SRCTRGHGRQSC*RSTTRACGACIPXXXXXXXXXXXXXXXXXRRRDHXXXXXXXXXXXXX 401
SRCTRGHGR+ C*RSTTRACGA P RR
Sbjct: 277 SRCTRGHGRRLC*RSTTRACGASGPTSGSATTSGSSSTSASSRRSTRCATSTTCRTTTSA 98
Query: 402 XXRSWGCRCRRPTPPRAKMTKASFSP 479
RSWGCRCRRPTPPRAKMTK + P
Sbjct: 97 AARSWGCRCRRPTPPRAKMTKQAPGP 20
Score = 105 bits (225), Expect(2) = 4e-078
Identities = 44/49 (89%), Positives = 44/49 (89%)
Frame = -1 / +1
Query: 147 PTPKKA*PSTWRESMLFSGFSKTISMKVRNSAVMTLGMTWRGPFTAGGT 1
PTPKKA*PS W ES LFSGFSKTISMKV NSAVMTLG TWRGPFTAGGT
Sbjct: 448 PTPKKA*PSRWMESKLFSGFSKTISMKVPNSAVMTLGTTWRGPFTAGGT 594
Score = 53.8 bits (111), Expect(2) = 9e-047
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = +1 / -2
Query: 1 RAPRRERSPPCHPQCHHRRV 60
RAPRRER+PPC PQCHHRRV
Sbjct: 594 RAPRRERTPPCRPQCHHRRV 535
Score = 34.5 bits (69), Expect(3) = 5e-051
Identities = 14/16 (87%), Positives = 14/16 (87%)
Frame = -2 / +2
Query: 50 **HWG*HGGDRSRRGA 3
**HWG HGG RSRRGA
Sbjct: 545 **HWGRHGGVRSRRGA 592
Score = 33.6 bits (67), Expect(3) = 5e-051
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = -3 / +3
Query: 154 AHPDAEEGVAIDVEGVYA 101
A PDAEEGVA++V+GV A
Sbjct: 441 AAPDAEEGVAVEVDGVQA 494
>gb|CW333518.1|CW333518 104_831_11481987_116_36043_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481987, DNA
sequence
Length = 600
Score = 215 bits (464), Expect(2) = 5e-073
Identities = 81/97 (83%), Positives = 88/97 (90%)
Frame = +2 / +1
Query: 149 MGPGKWSPEVRKTYNLLDTVSRHTIQVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQ 328
MGPGKW+P R TYNLLDTVSRHT+QVYPRSWTA+M+TFDNAGMWS+ SNIWER YLGEQ
Sbjct: 214 MGPGKWTPACRSTYNLLDTVSRHTVQVYPRSWTAVMMTFDNAGMWSIRSNIWERNYLGEQ 393
Query: 329 FYISVVSPARSLRDEYNMPDNALRCGKVVGLPLPPSY 439
YISV SP RSLRDEYNMP+ +LRCGKVVGLPLPPSY
Sbjct: 394 LYISVTSPERSLRDEYNMPETSLRCGKVVGLPLPPSY 504
Score = 151 bits (324), Expect(2) = 9e-049
Identities = 64/89 (71%), Positives = 72/89 (80%)
Frame = -1 / -2
Query: 414 TTLPQRRALSGMLYSSRSDRAGETTLM*NCSPR*YRSQMLECTLHMPALSNVSMIAVHDR 235
TTLPQRR +SGMLYSS SDR+GE TLM +CSPR*+ SQML+ LHMPALSNV + AVHD
Sbjct: 479 TTLPQRRLVSGMLYSSLSDRSGEVTLMYSCSPR*FLSQMLDRILHMPALSNVIITAVHDL 300
Query: 234 GYTWIVCRLTVSSRLYVFLTSGDHFPGPI 148
GYTW VCRLTVS RLYV +G H PGP+
Sbjct: 299 GYTWTVCRLTVSRRLYVLRHAGVHLPGPM 213
Score = 147 bits (316), Expect(2) = 3e-037
Identities = 67/99 (67%), Positives = 72/99 (72%)
Frame = -3 / -1
Query: 445 GGVGRRQRQPHDLAAAEGVVGHVVLVAQ*SRRRDDADVELLPEVVPLPDVGMHAPHARVV 266
G VGRRQ Q DLAAAE + HVVLV + RR DADV+LL EV+PLPDVG PHARVV
Sbjct: 510 GEVGRRQWQADDLAAAEAGLWHVVLVPERPLRRGDADVQLLAEVIPLPDVGPDTPHARVV 331
Query: 265 ERQHDCRP*PRVHLDRVPAHRVQQVVRLPHLRRPLPGAH 149
ER H RP PRVHLDRVPAHRVQ+VVR P RP AH
Sbjct: 330 ERHHHRRPRPRVHLDRVPAHRVQEVVRTPARWRPFARAH 214
Score = 116 bits (247), Expect = 5e-025
Identities = 48/69 (69%), Positives = 51/69 (73%)
Frame = +1 / +3
Query: 181 EDVQPAGHGEPAHDPGVPAVMDGNHADVRQRGHVERAFQHLGAVLPRGAVLHQRRLAGAI 360
E VQP GHGEPAH PGVP V+DG DVRQRGHVE QHLG LPR A +HQR LAGA+
Sbjct: 246 EYVQPPGHGEPAHGPGVPEVVDGGDDDVRQRGHVEYPVQHLGEELPRRAAVHQRHLAGAV 425
Query: 361 TARRVQHAR 387
RVQHAR
Sbjct: 426 AQGRVQHAR 452
Score = 80.8 bits (170), Expect(2) = 5e-073
Identities = 30/37 (81%), Positives = 34/37 (91%)
Frame = +2 / +2
Query: 38 PNVITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVG 148
PNV+ AEFRTFIE+VFENPEKSID+ H+DGYAFF VG
Sbjct: 5 PNVLRAEFRTFIEVVFENPEKSIDTFHIDGYAFFAVG 115
Score = 63.8 bits (133), Expect(2) = 9e-049
Identities = 28/37 (75%), Positives = 29/37 (78%)
Frame = -1 / -1
Query: 147 PTPKKA*PSTWRESMLFSGFSKTISMKVRNSAVMTLG 37
PT K A*PS W+ SMLFSGFS T SMKVRNSA TLG
Sbjct: 114 PTAKNA*PSMWKVSMLFSGFSNTTSMKVRNSARRTLG 4
Score = 29.0 bits (57), Expect(2) = 3e-037
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -3 / -3
Query: 148 PDAEEGVAIDVEGVYA 101
PD EE VA+DVEGV A
Sbjct: 115 PDGEECVAVDVEGVDA 68
>gb|BG047687.1|BG047687 OV1_26_F01.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 437
Score = 226 bits (489), Expect = 2e-058
Identities = 89/102 (87%), Positives = 94/102 (92%)
Frame = +2 / +3
Query: 158 GKWSPEVRKTYNLLDTVSRHTIQVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYI 337
G+WSPE R TYNLLD VSRHTIQVYPRSWTAIMLTFDNAGMWSV SNIWERYYLGEQFYI
Sbjct: 3 GQWSPEARVTYNLLDAVSRHTIQVYPRSWTAIMLTFDNAGMWSVRSNIWERYYLGEQFYI 182
Query: 338 SVVSPARSLRDEYNMPDNALRCGKVVGLPLPPSYAPAR*DDE 463
SV+SP SLRDEYNMPDN LRCGKVVGLPLPPSY+ AR*+D+
Sbjct: 183 SVISPEHSLRDEYNMPDNDLRCGKVVGLPLPPSYSAAR*NDQ 308
Score = 201 bits (434), Expect = 7e-051
Identities = 90/107 (84%), Positives = 91/107 (85%)
Frame = -3 / -1
Query: 478 GENEAFVILARGGVGRRQRQPHDLAAAEGVVGHVVLVAQ*SRRRDDADVELLPEVVPLPD 299
G VILARGGVGRRQRQPHDLAAAE VV HVVLVAQ RRDDADVELLPEVV LPD
Sbjct: 323 GPGACLVILARGGVGRRQRQPHDLAAAEVVVRHVVLVAQRVLRRDDADVELLPEVVALPD 144
Query: 298 VGMHAPHARVVERQHDCRP*PRVHLDRVPAHRVQQVVRLPHLRRPLP 158
VG APHARVVERQH+ RP*PRVHLDRVPAHRVQQVVR P LRRPLP
Sbjct: 143 VGPDAPHARVVERQHNRRP*PRVHLDRVPAHRVQQVVRHPRLRRPLP 3
Score = 166 bits (358), Expect = 2e-040
Identities = 72/86 (83%), Positives = 77/86 (89%)
Frame = -1 / -2
Query: 414 TTLPQRRALSGMLYSSRSDRAGETTLM*NCSPR*YRSQMLECTLHMPALSNVSMIAVHDR 235
TTLPQRR+LSGMLYSSRS+ +GE TLM*NCSPR* RSQML+ TLHMPALSNVS+IAVHD
Sbjct: 259 TTLPQRRSLSGMLYSSRSECSGEMTLM*NCSPR**RSQMLDRTLHMPALSNVSIIAVHDL 80
Query: 234 GYTWIVCRLTVSSRLYVFLTSGDHFP 157
GYTWIVCRLT SSRLYV L SGDH P
Sbjct: 79 GYTWIVCRLTASSRLYVTLASGDHCP 2
Score = 156 bits (335), Expect = 3e-037
Identities = 64/76 (84%), Positives = 68/76 (89%)
Frame = +1 / +2
Query: 163 VVAGGEEDVQPAGHGEPAHDPGVPAVMDGNHADVRQRGHVERAFQHLGAVLPRGAVLHQR 342
VVAGGE DVQPAG GEPAHDPGVP VMDG++ADVRQRGHVER QHLGA+LPRGAVLHQR
Sbjct: 8 VVAGGEGDVQPAGRGEPAHDPGVPEVMDGDYADVRQRGHVERPVQHLGALLPRGAVLHQR 187
Query: 343 RLAGAITARRVQHARQ 390
LAGA+ ARRVQHA Q
Sbjct: 188 HLAGALAARRVQHAGQ 235
Score = 107 bits (229), Expect = 1e-022
Identities = 43/86 (50%), Positives = 45/86 (52%)
Frame = +3 / +1
Query: 222 SRCTRGHGRQSC*RSTTRACGACIPXXXXXXXXXXXXXXXXXRRRDHXXXXXXXXXXXXX 401
SRCTRGHGR+ C*RSTTRACGA P RR
Sbjct: 67 SRCTRGHGRRLC*RSTTRACGASGPTSGSATTSGSSSTSASSRRSTRCATSTTCRTTTSA 246
Query: 402 XXRSWGCRCRRPTPPRAKMTKASFSP 479
RSWGCRCRRPTPPRAKMTK + P
Sbjct: 247 AARSWGCRCRRPTPPRAKMTKQAPGP 324
>gb|CF484496.1|CF484496 POL1_25_E03.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_25_E03_A002 5', mRNA sequence
Length = 545
Score = 210 bits (454), Expect = 1e-053
Identities = 82/91 (90%), Positives = 87/91 (95%)
Frame = +2 / +3
Query: 14 VNGPLHVIPNVITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYN 193
VNGPLHV+PNVITAEFRTFIEIVFENPEKS+DS+H+DGYAFFGVGMGPG+WSPE R TYN
Sbjct: 273 VNGPLHVVPNVITAEFRTFIEIVFENPEKSLDSIHLDGYAFFGVGMGPGQWSPEARVTYN 452
Query: 194 LLDTVSRHTIQVYPRSWTAIMLTFDNAGMWS 286
LLD VSRHTIQVYPRSWTAIMLTF NAGMWS
Sbjct: 453 LLDAVSRHTIQVYPRSWTAIMLTFYNAGMWS 545
Score = 192 bits (414), Expect = 4e-048
Identities = 80/91 (87%), Positives = 81/91 (89%)
Frame = -1 / -2
Query: 285 LHMPALSNVSMIAVHDRGYTWIVCRLTVSSRLYVFLTSGDHFPGPIPTPKKA*PSTWRES 106
LHMPAL NVS+IAVHD GYTWIVCRLT SSRLYV L SGDH PGPIPTPKKA*PS W ES
Sbjct: 544 LHMPAL*NVSIIAVHDLGYTWIVCRLTASSRLYVTLASGDHCPGPIPTPKKA*PSRWMES 365
Query: 105 MLFSGFSKTISMKVRNSAVMTLGMTWRGPFT 13
LFSGFSKTISMKVRNSAVMTLG TWRGPFT
Sbjct: 364 KLFSGFSKTISMKVRNSAVMTLGTTWRGPFT 272
Score = 126 bits (270), Expect(2) = 1e-030
Identities = 52/62 (83%), Positives = 56/62 (90%)
Frame = -3 / -1
Query: 286 APHARVVERQHDCRP*PRVHLDRVPAHRVQQVVRLPHLRRPLPGAHPDAEEGVAIDVEGV 107
APHARVVERQH+ RP*PRVHLDRVPAHRVQQVVR P LRRPLP HPDAEEGVA++V+GV
Sbjct: 545 APHARVVERQHNRRP*PRVHLDRVPAHRVQQVVRHPRLRRPLPRPHPDAEEGVAVEVDGV 366
Query: 106 YA 101
A
Sbjct: 365 QA 360
Score = 88.6 bits (187), Expect(2) = 3e-024
Identities = 35/41 (85%), Positives = 37/41 (90%)
Frame = +1 / +2
Query: 163 VVAGGEEDVQPAGHGEPAHDPGVPAVMDGNHADVRQRGHVE 285
VVAGGE DVQPAG GEPAHDPGVP VMDG++ADV QRGHVE
Sbjct: 422 VVAGGEGDVQPAGRGEPAHDPGVPEVMDGDYADVLQRGHVE 544
Score = 44.1 bits (90), Expect(2) = 3e-024
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +1 / +2
Query: 13 RERSPPCHPQCHHRRV 60
RER+PPC PQCHHRRV
Sbjct: 272 RERTPPCRPQCHHRRV 319
Score = 27.6 bits (54), Expect(2) = 1e-030
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = -2 / -3
Query: 50 **HWG*HGGDRSR 12
**HWG HGG RSR
Sbjct: 309 **HWGRHGGVRSR 271
>gb|BG048012.1|BG048012 OV1_26_F01.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 551
Score = 195 bits (420), Expect(3) = 6e-052
Identities = 77/86 (89%), Positives = 81/86 (94%)
Frame = +2 / +3
Query: 206 VSRHTIQVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPARSLRDEYNMP 385
VSRHTIQVYPRSWTAIMLTFDNAGMWSV SNIWERYYLGEQFYISV+SP SLRDEYNMP
Sbjct: 3 VSRHTIQVYPRSWTAIMLTFDNAGMWSVRSNIWERYYLGEQFYISVISPEHSLRDEYNMP 182
Query: 386 DNALRCGKVVGLPLPPSYAPAR*DDE 463
DN LRCGKVVGLPLPPSY+ AR*+D+
Sbjct: 183 DNDLRCGKVVGLPLPPSYSAAR*NDQ 260
Score = 170 bits (366), Expect(3) = 1e-046
Identities = 76/91 (83%), Positives = 77/91 (84%)
Frame = -3 / -1
Query: 478 GENEAFVILARGGVGRRQRQPHDLAAAEGVVGHVVLVAQ*SRRRDDADVELLPEVVPLPD 299
G VILARGGVGRRQRQPHDLAAAE VV HVVLVAQ RRDDADVELLPEVV LPD
Sbjct: 275 GPGACLVILARGGVGRRQRQPHDLAAAEVVVRHVVLVAQRVLRRDDADVELLPEVVALPD 96
Query: 298 VGMHAPHARVVERQHDCRP*PRVHLDRVPAH 206
VG APHARVVERQH+ RP*PRVHLDRVPAH
Sbjct: 95 VGPDAPHARVVERQHNRRP*PRVHLDRVPAH 3
Score = 139 bits (299), Expect(3) = 2e-035
Identities = 60/70 (85%), Positives = 65/70 (92%)
Frame = -1 / -2
Query: 414 TTLPQRRALSGMLYSSRSDRAGETTLM*NCSPR*YRSQMLECTLHMPALSNVSMIAVHDR 235
TTLPQRR+LSGMLYSSRS+ +GE TLM*NCSPR* RSQML+ TLHMPALSNVS+IAVHD
Sbjct: 211 TTLPQRRSLSGMLYSSRSECSGEMTLM*NCSPR**RSQMLDRTLHMPALSNVSIIAVHDL 32
Query: 234 GYTWIVCRLT 205
GYTWIVCRLT
Sbjct: 31 GYTWIVCRLT 2
Score = 129 bits (276), Expect(3) = 2e-031
Identities = 52/62 (83%), Positives = 56/62 (90%)
Frame = +1 / +2
Query: 205 GEPAHDPGVPAVMDGNHADVRQRGHVERAFQHLGAVLPRGAVLHQRRLAGAITARRVQHA 384
GEPAHDPGVP VMDG++ADVRQRGHVER QHLGA+LPRGAVLHQR LAGA+ ARRVQHA
Sbjct: 2 GEPAHDPGVPEVMDGDYADVRQRGHVERPVQHLGALLPRGAVLHQRHLAGALAARRVQHA 181
Query: 385 RQ 390
Q
Sbjct: 182 GQ 187
Score = 107 bits (229), Expect(2) = 2e-023
Identities = 43/86 (50%), Positives = 45/86 (52%)
Frame = +3 / +1
Query: 222 SRCTRGHGRQSC*RSTTRACGACIPXXXXXXXXXXXXXXXXXRRRDHXXXXXXXXXXXXX 401
SRCTRGHGR+ C*RSTTRACGA P RR
Sbjct: 19 SRCTRGHGRRLC*RSTTRACGASGPTSGSATTSGSSSTSASSRRSTRCATSTTCRTTTSA 198
Query: 402 XXRSWGCRCRRPTPPRAKMTKASFSP 479
RSWGCRCRRPTPPRAKMTK + P
Sbjct: 199 AARSWGCRCRRPTPPRAKMTKQAPGP 276
Score = 28.1 bits (55), Expect(3) = 1e-046
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -1 / -2
Query: 603 YMIF*EPRYSDLRGH 559
+ F*EP Y+D RGH
Sbjct: 541 FFFF*EPHYNDFRGH 497
Score = 27.6 bits (54), Expect(3) = 1e-046
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2 / -2
Query: 527 FFRICSFEFGLDGQTTRRKRGLRH 456
FFR+CSFEF + + R R L +
Sbjct: 403 FFRLCSFEFEFELRGARAARLLNY 332
Score = 26.3 bits (51), Expect(3) = 2e-035
Identities = 10/12 (83%), Positives = 12/12 (100%)
Frame = -3 / -1
Query: 595 FLRTPVQ*FERA 560
FLRTP+Q*F+RA
Sbjct: 533 FLRTPLQ*FQRA 498
Score = 24.9 bits (48), Expect(3) = 6e-052
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +3 / +1
Query: 561 ALSNHCTGVLKK 596
AL NHC GVL+K
Sbjct: 499 AL*NHCNGVLRK 534
Score = 24.0 bits (46), Expect(3) = 2e-031
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +2 / +3
Query: 560 CPLKSLYRGSQK 595
CPLKSL GSQK
Sbjct: 498 CPLKSL*WGSQK 533
Score = 24.0 bits (46), Expect(3) = 6e-052
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +1 / +3
Query: 493 SNPNSKEQIRKK 528
SN NSKEQ RKK
Sbjct: 369 SNSNSKEQRRKK 404
Score = 24.0 bits (46), Expect(3) = 2e-035
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = -3 / -3
Query: 532 HASFVFVLLSL 500
+ASFVFVLLSL
Sbjct: 408 YASFVFVLLSL 376
Score = 23.5 bits (45), Expect(3) = 2e-031
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3 / +2
Query: 492 IQSKLKRTNTKEA* 533
++ KLKRT TKEA*
Sbjct: 368 LKLKLKRTKTKEA* 409
Score = 22.6 bits (43), Expect(2) = 2e-023
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +2 / +1
Query: 500 QTQKNKYERSM 532
QTQKNK ERS+
Sbjct: 376 QTQKNKDERSV 408
>gb|CW333499.1|CW333499 104_831_11481987_148_36044_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481987, DNA
sequence
Length = 661
Score = 204 bits (441), Expect = 8e-052
Identities = 78/96 (81%), Positives = 86/96 (89%)
Frame = +2 / -3
Query: 152 GPGKWSPEVRKTYNLLDTVSRHTIQVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQF 331
GPGK +P R TYNLLDT+SRHT+QVYPRSWTA+M+TFDNAGMWS+ SNIWER YLGEQ
Sbjct: 647 GPGK*TPACRSTYNLLDTLSRHTVQVYPRSWTAVMMTFDNAGMWSIRSNIWERNYLGEQL 468
Query: 332 YISVVSPARSLRDEYNMPDNALRCGKVVGLPLPPSY 439
YISV SP RSLRDEYNMP+ +LRCGKVVGLPLPPSY
Sbjct: 467 YISVTSPERSLRDEYNMPETSLRCGKVVGLPLPPSY 360
Score = 148 bits (318), Expect = 7e-035
Identities = 63/88 (71%), Positives = 70/88 (79%)
Frame = -1 / +1
Query: 414 TTLPQRRALSGMLYSSRSDRAGETTLM*NCSPR*YRSQMLECTLHMPALSNVSMIAVHDR 235
TTLPQRR +SGMLYSS SDR+GE TLM +CSPR*+ SQML+ LHMPALSNV + AVHD
Sbjct: 385 TTLPQRRLVSGMLYSSLSDRSGEVTLMYSCSPR*FLSQMLDRILHMPALSNVIITAVHDL 564
Query: 234 GYTWIVCRLTVSSRLYVFLTSGDHFPGP 151
GYTW VCRL VS RLYV +G H PGP
Sbjct: 565 GYTWTVCRLNVSRRLYVLRHAGVHLPGP 648
Score = 137 bits (294), Expect = 2e-031
Identities = 62/89 (69%), Positives = 67/89 (75%)
Frame = -3 / +3
Query: 445 GGVGRRQRQPHDLAAAEGVVGHVVLVAQ*SRRRDDADVELLPEVVPLPDVGMHAPHARVV 266
G VGRRQ Q DLAAAE + HVVLV + RR DADV+LL EV+PLPDVG PHARVV
Sbjct: 354 GEVGRRQWQADDLAAAEAGLWHVVLVPERPLRRGDADVQLLAEVIPLPDVGPDTPHARVV 533
Query: 265 ERQHDCRP*PRVHLDRVPAHRVQQVVRLP 179
ER H RP PRVHLDRVPA RVQ+VVR P
Sbjct: 534 ERHHHRRPRPRVHLDRVPAQRVQEVVRTP 620
Score = 111 bits (238), Expect = 8e-024
Identities = 47/69 (68%), Positives = 50/69 (72%)
Frame = +1 / -2
Query: 181 EDVQPAGHGEPAHDPGVPAVMDGNHADVRQRGHVERAFQHLGAVLPRGAVLHQRRLAGAI 360
E VQP GH EPAH PGVP V+DG DVRQRGHVE QHLG LPR A +HQR LAGA+
Sbjct: 618 EYVQPPGHVEPAHGPGVPEVVDGGDDDVRQRGHVEYPVQHLGEELPRRAAVHQRHLAGAV 439
Query: 361 TARRVQHAR 387
RVQHAR
Sbjct: 438 AQGRVQHAR 412
>gb|CF484415.1|CF484415 POL1_25_E03.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_25_E03_A002 3', mRNA sequence
Length = 564
Score = 183 bits (394), Expect(3) = 2e-048
Identities = 72/81 (88%), Positives = 76/81 (93%)
Frame = +2 / +1
Query: 221 IQVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPARSLRDEYNMPDNALR 400
IQVYPRSWTAIMLTFDNAGMWSV SNIWERYYLGEQFYISV+SP SLRDEYNMPDN LR
Sbjct: 1 IQVYPRSWTAIMLTFDNAGMWSVRSNIWERYYLGEQFYISVISPEHSLRDEYNMPDNDLR 180
Query: 401 CGKVVGLPLPPSYAPAR*DDE 463
CGKVVGLPLPPSY+ AR*+D+
Sbjct: 181 CGKVVGLPLPPSYSAAR*NDQ 243
Score = 157 bits (338), Expect(3) = 2e-042
Identities = 71/86 (82%), Positives = 72/86 (83%)
Frame = -3 / -1
Query: 478 GENEAFVILARGGVGRRQRQPHDLAAAEGVVGHVVLVAQ*SRRRDDADVELLPEVVPLPD 299
G VILARGGVGRRQRQPHDLAAAE VV HVVLVAQ RRDDADVELLPEVV LPD
Sbjct: 258 GPGACLVILARGGVGRRQRQPHDLAAAEVVVRHVVLVAQRVLRRDDADVELLPEVVALPD 79
Query: 298 VGMHAPHARVVERQHDCRP*PRVHLD 221
VG APHARVVERQH+ RP*PRVHLD
Sbjct: 78 VGPDAPHARVVERQHNRRP*PRVHLD 1
Score = 125 bits (268), Expect(3) = 3e-031
Identities = 54/64 (84%), Positives = 59/64 (92%)
Frame = -1 / -2
Query: 414 TTLPQRRALSGMLYSSRSDRAGETTLM*NCSPR*YRSQMLECTLHMPALSNVSMIAVHDR 235
TTLPQRR+LSGMLYSSRS+ +GE TLM*NCSPR* RSQML+ TLHMPALSNVS+IAVHD
Sbjct: 194 TTLPQRRSLSGMLYSSRSECSGEMTLM*NCSPR**RSQMLDRTLHMPALSNVSIIAVHDL 15
Query: 234 GYTW 223
GYTW
Sbjct: 14 GYTW 3
Score = 112 bits (240), Expect(3) = 1e-026
Identities = 46/56 (82%), Positives = 50/56 (89%)
Frame = +1 / +3
Query: 223 PGVPAVMDGNHADVRQRGHVERAFQHLGAVLPRGAVLHQRRLAGAITARRVQHARQ 390
PGVP VMDG++ADVRQRGHVER QHLGA+LPRGAVLHQR LAGA+ ARRVQHA Q
Sbjct: 3 PGVPEVMDGDYADVRQRGHVERPVQHLGALLPRGAVLHQRHLAGALAARRVQHAGQ 170
Score = 107 bits (229), Expect(2) = 2e-023
Identities = 43/86 (50%), Positives = 45/86 (52%)
Frame = +3 / +2
Query: 222 SRCTRGHGRQSC*RSTTRACGACIPXXXXXXXXXXXXXXXXXRRRDHXXXXXXXXXXXXX 401
SRCTRGHGR+ C*RSTTRACGA P RR
Sbjct: 2 SRCTRGHGRRLC*RSTTRACGASGPTSGSATTSGSSSTSASSRRSTRCATSTTCRTTTSA 181
Query: 402 XXRSWGCRCRRPTPPRAKMTKASFSP 479
RSWGCRCRRPTPPRAKMTK + P
Sbjct: 182 AARSWGCRCRRPTPPRAKMTKQAPGP 259
Score = 27.6 bits (54), Expect(3) = 2e-042
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2 / -2
Query: 527 FFRICSFEFGLDGQTTRRKRGLRH 456
FFR+CSFEF + + R R L +
Sbjct: 386 FFRLCSFEFEFELRGARAARLLNY 315
Score = 26.7 bits (52), Expect(3) = 2e-042
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -1 / -2
Query: 594 F*EPRYSDLRGH 559
F*EP Y+D RGH
Sbjct: 515 F*EPHYNDFRGH 480
Score = 26.3 bits (51), Expect(3) = 3e-031
Identities = 10/12 (83%), Positives = 12/12 (100%)
Frame = -3 / -1
Query: 595 FLRTPVQ*FERA 560
FLRTP+Q*F+RA
Sbjct: 516 FLRTPLQ*FQRA 481
Score = 24.9 bits (48), Expect(3) = 2e-048
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +3 / +2
Query: 561 ALSNHCTGVLKK 596
AL NHC GVL+K
Sbjct: 482 AL*NHCNGVLRK 517
Score = 24.0 bits (46), Expect(3) = 1e-026
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +2 / +1
Query: 560 CPLKSLYRGSQK 595
CPLKSL GSQK
Sbjct: 481 CPLKSL*WGSQK 516
Score = 24.0 bits (46), Expect(3) = 2e-048
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +1 / +1
Query: 493 SNPNSKEQIRKK 528
SN NSKEQ RKK
Sbjct: 352 SNSNSKEQRRKK 387
Score = 24.0 bits (46), Expect(3) = 3e-031
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = -3 / -3
Query: 532 HASFVFVLLSL 500
+ASFVFVLLSL
Sbjct: 391 YASFVFVLLSL 359
Score = 23.5 bits (45), Expect(3) = 1e-026
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3 / +3
Query: 492 IQSKLKRTNTKEA* 533
++ KLKRT TKEA*
Sbjct: 351 LKLKLKRTKTKEA* 392
Score = 22.6 bits (43), Expect(2) = 2e-023
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +2 / +2
Query: 500 QTQKNKYERSM 532
QTQKNK ERS+
Sbjct: 359 QTQKNKDERSV 391
>gb|BF586098.1|BF586098 FM1_26_F08.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 661
Score = 184 bits (397), Expect = 9e-046
Identities = 70/133 (52%), Positives = 94/133 (70%)
Frame = +2 / +3
Query: 20 GPLHVIPNVITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNLL 199
G ++ +V+ A R ++EIVF+NPE + S H+DGYAF+ VGM G+W+P R+ YNL
Sbjct: 45 GGAYLQTSVMAANMRDYVEIVFQNPENFVQSWHIDGYAFWVVGMDGGQWTPASRQGYNLR 224
Query: 200 DTVSRHTIQVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPARSLRDEYN 379
D ++R+T+QVYP+SWTAI + DN GMW+V S W R YLG+QFY+ V SPA S RDE
Sbjct: 225 DAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENP 404
Query: 380 MPDNALRCGKVVG 418
+P NAL CG+ G
Sbjct: 405 IPKNALLCGRASG 443
Score = 104 bits (222), Expect = 1e-021
Identities = 58/121 (47%), Positives = 69/121 (57%)
Frame = -1 / -1
Query: 405 PQRRALSGMLYSSRSDRAGETTLM*NCSPR*YRSQMLECTLHMPALSNVSMIAVHDRGYT 226
PQ A G+ +SSR + AGE T *NC PR +Q+ + T H+P LS+ IAVHD GYT
Sbjct: 430 PQSSAFLGIGFSSRHEFAGE*TRR*NCWPRYCLAQLSDLTFHIPTLSSGM*IAVHD*GYT 251
Query: 225 WIVCRLTVSSRLYVFLTSGDHFPGPIPTPKKA*PSTWRESMLFSGFSKTISMKVRNSAVM 46
V R S RLY +G H P IPT + A*PS + FSGF KTIS R A M
Sbjct: 250 CNVYRAMASLRLYP*RLAGVHCPPSIPTTQNA*PSMCHDCTKFSGF*KTIST*SRMLAAM 71
Query: 45 T 43
T
Sbjct: 70 T 68
>gb|BF421494.1|BF421494 FM1_8_D12.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 674
Score = 181 bits (389), Expect = 1e-044
Identities = 69/133 (51%), Positives = 93/133 (69%)
Frame = +2 / +1
Query: 20 GPLHVIPNVITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNLL 199
G ++ +V+ A R ++EIVF+N E + S H+DGYAF+ VGM G+W+P R+ YNL
Sbjct: 16 GGAYLQTSVMAANMRDYVEIVFQNTENFVQSWHIDGYAFWVVGMDGGQWTPASRQGYNLR 195
Query: 200 DTVSRHTIQVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPARSLRDEYN 379
D ++R+T+QVYP+SWTAI + DN GMW+V S W R YLG+QFY+ V SPA S RDE
Sbjct: 196 DAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENP 375
Query: 380 MPDNALRCGKVVG 418
+P NAL CG+ G
Sbjct: 376 IPKNALLCGRASG 414
>gb|CN129609.1|CN129609 RHOH1_36_H07.b3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_36_H07_A002 3', mRNA sequence
Length = 742
Score = 181 bits (389), Expect = 1e-044
Identities = 69/133 (51%), Positives = 93/133 (69%)
Frame = +2 / +1
Query: 20 GPLHVIPNVITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNLL 199
G ++ +V+ A R ++EIVF+N E + S H+DGYAF+ VGM G+W+P R+ YNL
Sbjct: 61 GGAYLQTSVMAANMRDYVEIVFQNTENFVQSWHIDGYAFWVVGMDGGQWTPASRQGYNLR 240
Query: 200 DTVSRHTIQVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPARSLRDEYN 379
D ++R+T+QVYP+SWTAI + DN GMW+V S W R YLG+QFY+ V SPA S RDE
Sbjct: 241 DAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENP 420
Query: 380 MPDNALRCGKVVG 418
+P NAL CG+ G
Sbjct: 421 IPKNALLCGRASG 459
>gb|BF586907.1|BF586907 FM1_31_H11.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 646
Score = 180 bits (387), Expect = 2e-044
Identities = 68/126 (53%), Positives = 90/126 (71%)
Frame = +2 / +3
Query: 41 NVITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNLLDTVSRHT 220
+V+ A R ++EIVF+N E + S H+DGYAF+ VGM G+W+P R+ YNL D ++R+T
Sbjct: 9 SVMAANMRDYVEIVFQNTENFVQSWHIDGYAFWVVGMDGGQWTPASRQGYNLRDAIARYT 188
Query: 221 IQVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPARSLRDEYNMPDNALR 400
+QVYP+SWTAI + DN GMW+V S W R YLG+QFY+ V SPA S RDE +P NAL
Sbjct: 189 LQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENPIPKNALL 368
Query: 401 CGKVVG 418
CG+ G
Sbjct: 369 CGRASG 386
>gb|BG465293.1|BG465293 EM1_74_D12.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 608
Score = 172 bits (370), Expect = 5e-042
Identities = 65/116 (56%), Positives = 84/116 (72%)
Frame = +2 / +1
Query: 71 IEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNLLDTVSRHTIQVYPRSWTA 250
+EIVF+N E + S H+DGYAF+ VGM G+W+P R+ YNL D ++R+T+QVYP+SWTA
Sbjct: 1 VEIVFQNTENFVQSWHIDGYAFWVVGMDGGQWTPASRQGYNLRDAIARYTLQVYPQSWTA 180
Query: 251 IMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPARSLRDEYNMPDNALRCGKVVG 418
I + DN GMW+V S W R YLG+QFY+ V SPA S RDE +P NAL CG+ G
Sbjct: 181 IYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENPIPKNALLCGRASG 348
>gb|CX611383.1|CX611383 ANR1_24_G11.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_24_G11_A002 3', mRNA sequence
Length = 725
Score = 171 bits (368), Expect = 9e-042
Identities = 61/127 (48%), Positives = 90/127 (70%)
Frame = +2 / +3
Query: 44 VITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNLLDTVSRHTI 223
V+ F+E+VF+N E + + H+DGY F+ VG G G+W+ R+TYNL+D +RHT+
Sbjct: 36 VLRLGLHEFVEVVFQNTESELQAWHLDGYDFWVVGYGDGQWNETQRQTYNLVDAQARHTV 215
Query: 224 QVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPARSLRDEYNMPDNALRC 403
QVYP W+AI+++ DN GMW++ S IW+R YLG+Q Y+ V +P +S +EY +P +A+ C
Sbjct: 216 QVYPNGWSAILVSLDNQGMWNLRSAIWDRQYLGQQLYLRVWTPQQSFSNEYAIPTDAILC 395
Query: 404 GKVVGLP 424
GK VGLP
Sbjct: 396 GKAVGLP 416
>gb|CF480672.1|CF480672 POL1_67_E06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_67_E06_A002 3', mRNA sequence
Length = 691
Score = 163 bits (350), Expect = 3e-039
Identities = 61/73 (83%), Positives = 67/73 (91%)
Frame = +2 / +2
Query: 221 IQVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPARSLRDEYNMPDNALR 400
+QVYPRSWTA+M+TFDNAGMWS+ SNIWER YLGEQ YISV SP RSLRDEYNMP+ +LR
Sbjct: 2 VQVYPRSWTAVMMTFDNAGMWSIRSNIWERNYLGEQLYISVTSPERSLRDEYNMPETSLR 181
Query: 401 CGKVVGLPLPPSY 439
CGKVVGLPLPPSY
Sbjct: 182 CGKVVGLPLPPSY 220
Score = 113 bits (242), Expect = 2e-024
Identities = 48/64 (75%), Positives = 54/64 (84%)
Frame = -1 / -2
Query: 414 TTLPQRRALSGMLYSSRSDRAGETTLM*NCSPR*YRSQMLECTLHMPALSNVSMIAVHDR 235
TTLPQRR +SGMLYSS SDR+GE TLM +CSPR*+ SQML+ LHMPALSNV + AVHD
Sbjct: 195 TTLPQRRLVSGMLYSSLSDRSGEVTLMYSCSPR*FLSQMLDRILHMPALSNVIITAVHDL 16
Query: 234 GYTW 223
GYTW
Sbjct: 15 GYTW 4
Score = 112 bits (239), Expect = 6e-024
Identities = 51/75 (68%), Positives = 55/75 (73%)
Frame = -3 / -1
Query: 445 GGVGRRQRQPHDLAAAEGVVGHVVLVAQ*SRRRDDADVELLPEVVPLPDVGMHAPHARVV 266
G VGRRQ Q DLAAAE + HVVLV + RR DADV+LL EV+PLPDVG PHARVV
Sbjct: 226 GEVGRRQWQADDLAAAEAGLWHVVLVPERPLRRGDADVQLLAEVIPLPDVGPDTPHARVV 47
Query: 265 ERQHDCRP*PRVHLD 221
ER H RP PRVHLD
Sbjct: 46 ERHHHRRPRPRVHLD 2
>gb|CX606430.1|CX606430 ANR1_3_A12.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_3_A12_A002 3', mRNA sequence
Length = 623
Score = 162 bits (348), Expect = 5e-039
Identities = 61/111 (54%), Positives = 79/111 (71%)
Frame = +2 / +3
Query: 86 ENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNLLDTVSRHTIQVYPRSWTAIMLTF 265
+N E + S H+DGYAF+ VGM G+W+P R+ YNL D ++R+T+QVYP+SWTAI +
Sbjct: 3 QNTENFVQSWHIDGYAFWVVGMDGGQWTPASRQGYNLRDAIARYTLQVYPQSWTAIYMPL 182
Query: 266 DNAGMWSVHSNIWERYYLGEQFYISVVSPARSLRDEYNMPDNALRCGKVVG 418
DN GMW+V S W R YLG+QFY+ V SPA S RDE +P NAL CG+ G
Sbjct: 183 DNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENPIPKNALLCGRASG 335
>gb|CW347590.1|CW347590 fsbb001f007i24k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f007i24, DNA
sequence
Length = 558
Score = 150 bits (322), Expect(2) = 2e-036
Identities = 57/69 (82%), Positives = 62/69 (89%)
Frame = +2 / -1
Query: 233 PRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPARSLRDEYNMPDNALRCGKV 412
PRSWTA+M+TFDNAGMWS+ SNIWER LGEQ YISV SP RSLRDEYNMP+ +LRCGKV
Sbjct: 501 PRSWTAVMMTFDNAGMWSIRSNIWERNSLGEQLYISVTSPERSLRDEYNMPETSLRCGKV 322
Query: 413 VGLPLPPSY 439
VGLPLPPSY
Sbjct: 321 VGLPLPPSY 295
Score = 100 bits (214), Expect(2) = 7e-022
Identities = 44/61 (72%), Positives = 50/61 (81%)
Frame = -1 / +2
Query: 414 TTLPQRRALSGMLYSSRSDRAGETTLM*NCSPR*YRSQMLECTLHMPALSNVSMIAVHDR 235
TTLPQRR +SGMLYSS SDR+GE TLM +CSPR + SQML+ LHMPALSNV + AVHD
Sbjct: 320 TTLPQRRLVSGMLYSSLSDRSGEVTLMYSCSPREFLSQMLDRILHMPALSNVIITAVHDL 499
Query: 234 G 232
G
Sbjct: 500 G 502
Score = 24.0 bits (46), Expect(2) = 7e-022
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -1 / +3
Query: 234 GYTWIVCR 211
GYTW VCR
Sbjct: 501 GYTWTVCR 524
Score = 23.5 bits (45), Expect(2) = 2e-036
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = +2 / -3
Query: 209 SRHTIQVYP 235
+RHT+QVYP
Sbjct: 526 ARHTVQVYP 500
>gb|CF486575.1|CF486575 POL1_38_B08.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_38_B08_A002 5', mRNA sequence
Length = 727
Score = 150 bits (322), Expect = 2e-035
Identities = 57/76 (75%), Positives = 65/76 (85%)
Frame = +2 / +3
Query: 2 VPPAVNGPLHVIPNVITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVR 181
VPPA + P + PNV+ AEFRTFIE+VFENPEKSID+ H+DGYAFF VGMGPGKW+P R
Sbjct: 498 VPPAKSAPTKMAPNVLRAEFRTFIEVVFENPEKSIDTFHIDGYAFFAVGMGPGKWTPACR 677
Query: 182 KTYNLLDTVSRHTIQV 229
TYNLLDTVSRHT+QV
Sbjct: 678 STYNLLDTVSRHTVQV 725
Score = 118 bits (253), Expect = 7e-026
Identities = 52/77 (67%), Positives = 55/77 (71%)
Frame = -1 / -1
Query: 231 YTWIVCRLTVSSRLYVFLTSGDHFPGPIPTPKKA*PSTWRESMLFSGFSKTISMKVRNSA 52
YTW VCRLTVS RLYV +G H PGP+PT K A*PS W+ SMLFSGFS T SMKVRNSA
Sbjct: 727 YTWTVCRLTVSRRLYVLRHAGVHLPGPMPTAKNA*PSMWKVSMLFSGFSNTTSMKVRNSA 548
Query: 51 VMTLGMTWRGPFTAGGT 1
TLG G AGGT
Sbjct: 547 RRTLGAILVGADLAGGT 497
>gb|CF489723.1|CF489723 POL1_59_F09.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_59_F09_A002 3', mRNA sequence
Length = 658
Score = 147 bits (315), Expect = 2e-034
Identities = 55/66 (83%), Positives = 60/66 (90%)
Frame = +2 / +3
Query: 242 WTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPARSLRDEYNMPDNALRCGKVVGL 421
WTA+M+TFDNAGMWS+ SNIWER YLGEQ YISV SP RSLRDEYNMP+ +LRCGKVVGL
Sbjct: 3 WTAVMMTFDNAGMWSIRSNIWERNYLGEQLYISVTSPERSLRDEYNMPETSLRCGKVVGL 182
Query: 422 PLPPSY 439
PLPPSY
Sbjct: 183 PLPPSY 200
>gb|CF489854.1|CF489854 POL1_61_B07.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_61_B07_A002 3', mRNA sequence
Length = 523
Score = 141 bits (303), Expect = 9e-033
Identities = 52/89 (58%), Positives = 66/89 (74%)
Frame = +2 / +1
Query: 143 VGMGPGKWSPEVRKTYNLLDTVSRHTIQVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLG 322
VGM G WS + R YNL+D VSR T+QVYPR WTA+++ DN GMW++ S +W R YLG
Sbjct: 1 VGMDVGTWSNKSRDGYNLVDAVSRCTVQVYPRGWTAVLIALDNVGMWNMRSEVWARRYLG 180
Query: 323 EQFYISVVSPARSLRDEYNMPDNALRCGK 409
+QFY+ V +P+RS RDE MPDNAL CG+
Sbjct: 181 QQFYLRVYTPSRSFRDELPMPDNALLCGR 267
>gb|CW266285.1|CW266285 104_736_11232344_116_35282_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11232344, DNA
sequence
Length = 649
Score = 137 bits (293), Expect = 2e-031
Identities = 50/87 (57%), Positives = 64/87 (73%)
Frame = +2 / +2
Query: 149 MGPGKWSPEVRKTYNLLDTVSRHTIQVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQ 328
M G WS + R YNL+D VSR T+QVYPR WTA+++ DN GMW++ S +W R YLG+Q
Sbjct: 44 MDVGTWSNKSRDGYNLVDAVSRCTVQVYPRGWTAVLIALDNVGMWNMRSEVWARRYLGQQ 223
Query: 329 FYISVVSPARSLRDEYNMPDNALRCGK 409
FY+ V +P+RS RDE MPDNAL CG+
Sbjct: 224 FYLRVYTPSRSFRDELPMPDNALLCGR 304
>gb|CW371735.1|CW371735 fsbb001f047f12k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f047f12, DNA
sequence
Length = 645
Score = 137 bits (293), Expect = 2e-031
Identities = 50/87 (57%), Positives = 64/87 (73%)
Frame = +2 / -2
Query: 149 MGPGKWSPEVRKTYNLLDTVSRHTIQVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQ 328
M G WS + R YNL+D VSR T+QVYPR WTA+++ DN GMW++ S +W R YLG+Q
Sbjct: 518 MDVGTWSNKSRDGYNLVDAVSRCTVQVYPRGWTAVLIALDNVGMWNMRSEVWARRYLGQQ 339
Query: 329 FYISVVSPARSLRDEYNMPDNALRCGK 409
FY+ V +P+RS RDE MPDNAL CG+
Sbjct: 338 FYLRVYTPSRSFRDELPMPDNALLCGR 258
>gb|CW473222.1|CW473222 fsbb001f228i05k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f228i05, DNA
sequence
Length = 620
Score = 137 bits (293), Expect = 2e-031
Identities = 50/87 (57%), Positives = 64/87 (73%)
Frame = +2 / -1
Query: 149 MGPGKWSPEVRKTYNLLDTVSRHTIQVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQ 328
M G WS + R YNL+D VSR T+QVYPR WTA+++ DN GMW++ S +W R YLG+Q
Sbjct: 479 MDVGTWSNKSRDGYNLVDAVSRCTVQVYPRGWTAVLIALDNVGMWNMRSEVWARRYLGQQ 300
Query: 329 FYISVVSPARSLRDEYNMPDNALRCGK 409
FY+ V +P+RS RDE MPDNAL CG+
Sbjct: 299 FYLRVYTPSRSFRDELPMPDNALLCGR 219
>gb|CF488326.1|CF488326 POL1_49_E06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_49_E06_A002 3', mRNA sequence
Length = 521
Score = 137 bits (293), Expect = 2e-031
Identities = 50/88 (56%), Positives = 64/88 (72%)
Frame = +2 / +2
Query: 146 GMGPGKWSPEVRKTYNLLDTVSRHTIQVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGE 325
GM G WS + R Y L+D VSR T+QVYPR WTA+++ DN GMW++ S +W R YLG+
Sbjct: 2 GMDVGTWSNKSRDGYTLVDAVSRCTVQVYPRGWTAVLIALDNVGMWNMRSEVWARRYLGQ 181
Query: 326 QFYISVVSPARSLRDEYNMPDNALRCGK 409
QFY+ V +P+RS RDE MPDNAL CG+
Sbjct: 182 QFYLRVYTPSRSFRDELPMPDNALLCGR 265
>gb|CF482627.1|CF482627 POL1_8_D05.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_8_D05_A002 3', mRNA sequence
Length = 524
Score = 133 bits (285), Expect = 3e-030
Identities = 49/88 (55%), Positives = 63/88 (71%)
Frame = +2 / +2
Query: 146 GMGPGKWSPEVRKTYNLLDTVSRHTIQVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGE 325
GM WS + R Y L+D VSR T+QVYPR WTA+++ DN GMW++ S +W R YLG+
Sbjct: 2 GMDVRTWSNKSRDGYTLVDAVSRCTVQVYPRGWTAVLIALDNVGMWNMRSEVWARRYLGQ 181
Query: 326 QFYISVVSPARSLRDEYNMPDNALRCGK 409
QFY+ V +P+RS RDE MPDNAL CG+
Sbjct: 182 QFYLRVYTPSRSFRDELPMPDNALLCGR 265
>gb|BG412419.1|BG412419 OV2_33_H06.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 678
Score = 131 bits (280), Expect = 1e-029
Identities = 49/113 (43%), Positives = 78/113 (69%)
Frame = +2 / +1
Query: 14 VNGPLHVIPNVITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYN 193
++GP + +VI + ++ F+EIVF+N + ++ + H+DGYAF+ VGM G+W+ +R TYN
Sbjct: 1 IDGPPVIRTSVINSTYKNFLEIVFQNNDTTVQTYHIDGYAFWVVGMDYGEWTENIRGTYN 180
Query: 194 LLDTVSRHTIQVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSP 352
D VSR T QV+P +WTA+ML+ D+ G W+V + + +YLG++ I VV P
Sbjct: 181 KWDGVSRCTTQVFPGAWTAVMLSLDSPGFWNVRTENLDTWYLGQETSIRVVDP 339
>gb|CF486499.1|CF486499 POL1_38_B11.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_38_B11_A002 3', mRNA sequence
Length = 523
Score = 127 bits (271), Expect = 2e-028
Identities = 47/87 (54%), Positives = 61/87 (70%)
Frame = +2 / +3
Query: 149 MGPGKWSPEVRKTYNLLDTVSRHTIQVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQ 328
M G WS + R Y L+D VSR T+QVYPR WTA+++ DN GMW++ S +W R YLG+Q
Sbjct: 3 MDVGTWSNKSRDGYTLVDAVSRCTVQVYPRGWTAVLIALDNVGMWNMRSEVWARRYLGQQ 182
Query: 329 FYISVVSPARSLRDEYNMPDNALRCGK 409
FY+ V +P+RS RDE MPDNA G+
Sbjct: 183 FYLRVYTPSRSFRDELPMPDNAFFWGR 263
>gb|BG050704.1|BG050704 FM1_71_H08.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 501
Score = 122 bits (260), Expect = 7e-027
Identities = 46/80 (57%), Positives = 58/80 (72%)
Frame = +2 / +1
Query: 179 RKTYNLLDTVSRHTIQVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPAR 358
R+ YNL D ++R+T+QVYP+SWTAI + DN GMW+V S W R YLG+QFY+ V SPA
Sbjct: 4 RQGYNLRDAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPAN 183
Query: 359 SLRDEYNMPDNALRCGKVVG 418
S RDE +P NAL CG+ G
Sbjct: 184 SWRDENPIPKNALLCGRASG 243
>gb|BG103595.1|BG103595 RHIZ2_38_E03.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 505
Score = 122 bits (260), Expect = 7e-027
Identities = 46/80 (57%), Positives = 58/80 (72%)
Frame = +2 / +3
Query: 179 RKTYNLLDTVSRHTIQVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPAR 358
R+ YNL D ++R+T+QVYP+SWTAI + DN GMW+V S W R YLG+QFY+ V SPA
Sbjct: 6 RQGYNLRDAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPAN 185
Query: 359 SLRDEYNMPDNALRCGKVVG 418
S RDE +P NAL CG+ G
Sbjct: 186 SWRDENPIPKNALLCGRASG 245
>gb|CW045891.1|CW045891 104_282_10509838_114_30229 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10509838, DNA
sequence
Length = 625
Score = 117 bits (250), Expect = 2e-025
Identities = 45/49 (91%), Positives = 49/49 (100%)
Frame = +2 / -1
Query: 2 VPPAVNGPLHVIPNVITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVG 148
VPPAVNGPLHV+PNVITAEFRTFIEIVFENPEKS+DS+H+DGYAFFGVG
Sbjct: 163 VPPAVNGPLHVVPNVITAEFRTFIEIVFENPEKSLDSIHLDGYAFFGVG 17
Score = 109 bits (232), Expect = 5e-023
Identities = 45/49 (91%), Positives = 45/49 (91%)
Frame = -1 / +3
Query: 147 PTPKKA*PSTWRESMLFSGFSKTISMKVRNSAVMTLGMTWRGPFTAGGT 1
PTPKKA*PS W ES LFSGFSKTISMKVRNSAVMTLG TWRGPFTAGGT
Sbjct: 18 PTPKKA*PSRWMESKLFSGFSKTISMKVRNSAVMTLGTTWRGPFTAGGT 164
>gb|BG239815.1|BG239815 OV1_29_D04.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 470
Score = 113 bits (241), Expect = 3e-024
Identities = 42/73 (57%), Positives = 53/73 (72%)
Frame = +2 / +1
Query: 200 DTVSRHTIQVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPARSLRDEYN 379
D ++R+T+QVYP+SWTAI + DN GMW+V S W R YLG+QFY+ V SPA S RDE
Sbjct: 1 DAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENP 180
Query: 380 MPDNALRCGKVVG 418
+P NAL CG+ G
Sbjct: 181 IPKNALLCGRASG 219
>gb|CX607178.1|CX607178 ANR1_7_D05.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_7_D05_A002 3', mRNA sequence
Length = 794
Score = 108 bits (231), Expect = 7e-023
Identities = 41/88 (46%), Positives = 60/88 (68%)
Frame = +2 / +1
Query: 89 NPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNLLDTVSRHTIQVYPRSWTAIMLTFD 268
N + ++ + H+DGYAF+ VGM G+W+ R TYN D VSR T QV+P +WTA+ML+ D
Sbjct: 1 NNDTTVQTYHIDGYAFWVVGMDYGEWTENSRGTYNKWDGVSRCTTQVFPGAWTAVMLSLD 180
Query: 269 NAGMWSVHSNIWERYYLGEQFYISVVSP 352
+ G W+V + + +YLG++ YI VV P
Sbjct: 181 SPGFWNVRTENLDTWYLGQETYIRVVDP 264
>gb|CW227956.1|CW227956 104_667_11206095_116_37239_054 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11206095, DNA
sequence
Length = 645
Score = 86.3 bits (182), Expect(3) = 1e-022
Identities = 31/68 (45%), Positives = 48/68 (70%)
Frame = +2 / +2
Query: 149 MGPGKWSPEVRKTYNLLDTVSRHTIQVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQ 328
M G+W+ + R TYN D V+R TIQVYP +W A++++ DN G+W+V S + +YLG++
Sbjct: 176 MDYGEWTEDSRGTYNKGDGVARSTIQVYPGAWAAVLVSLDNVGVWNVRSENLDSWYLGQE 355
Query: 329 FYISVVSP 352
Y+ VV+P
Sbjct: 356 VYVRVVNP 379
Score = 33.6 bits (67), Expect(3) = 1e-022
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2 / +1
Query: 83 FENPEKSIDSLHVDGYAFFGVG 148
F+N + + S H+DGYAFF VG
Sbjct: 1 FQNNDTRMQSYHMDGYAFFVVG 66
Score = 24.9 bits (48), Expect(3) = 1e-022
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +2 / +2
Query: 365 RDEYNMPDNALRCGKV 412
+ E +PDNAL CG++
Sbjct: 395 KTEMGIPDNALYCGQL 442
>gb|CW182759.1|CW182759 104_598_11164251_116_36667_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11164251, DNA
sequence
Length = 687
Score = 107 bits (228), Expect = 2e-022
Identities = 40/65 (61%), Positives = 48/65 (73%)
Frame = +2 / -3
Query: 224 QVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPARSLRDEYNMPDNALRC 403
QVYPRSWTAI + DN GMW+V S W R YLG+QFY+ V +P+ SLRDEY +P NAL C
Sbjct: 247 QVYPRSWTAIYMPLDNVGMWNVRSENWARQYLGQQFYLRVWTPSTSLRDEYPIPKNALLC 68
Query: 404 GKVVG 418
G+ G
Sbjct: 67 GRAAG 53
>gb|CW190148.1|CW190148 104_611_11174347_116_36749_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11174347, DNA
sequence
Length = 688
Score = 107 bits (228), Expect = 2e-022
Identities = 40/65 (61%), Positives = 48/65 (73%)
Frame = +2 / +3
Query: 224 QVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPARSLRDEYNMPDNALRC 403
QVYPRSWTAI + DN GMW+V S W R YLG+QFY+ V +P+ SLRDEY +P NAL C
Sbjct: 183 QVYPRSWTAIYMPLDNVGMWNVRSENWARQYLGQQFYLRVWTPSTSLRDEYPIPKNALLC 362
Query: 404 GKVVG 418
G+ G
Sbjct: 363 GRAAG 377
>gb|CW216844.1|CW216844 104_649_11195330_116_37124_001 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11195330, DNA
sequence
Length = 706
Score = 107 bits (228), Expect = 2e-022
Identities = 40/65 (61%), Positives = 48/65 (73%)
Frame = +2 / -1
Query: 224 QVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPARSLRDEYNMPDNALRC 403
QVYPRSWTAI + DN GMW+V S W R YLG+QFY+ V +P+ SLRDEY +P NAL C
Sbjct: 472 QVYPRSWTAIYMPLDNVGMWNVRSENWARQYLGQQFYLRVWTPSTSLRDEYPIPKNALLC 293
Query: 404 GKVVG 418
G+ G
Sbjct: 292 GRAAG 278
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 737,282,930
Number of Sequences: 832831
Number of extensions: 10476218
Number of successful extensions: 139811
Number of sequences better than 1.0e-020: 37
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 20079512258
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)