TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115208.2.1
(1469 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW045891.1|CW045891 104_282_10509838_114_30229 Sorghum m... 354 e-128
gb|CF486575.1|CF486575 POL1_38_B08.g1_A002 Pollen Sorghum b... 350 e-123
gb|CF484935.1|CF484935 POL1_28_A11.g1_A002 Pollen Sorghum b... 297 e-118
gb|CW478498.1|CW478498 fsbb001f236g18f0 Sorghum methylation... 241 7e-095
gb|CF484496.1|CF484496 POL1_25_E03.g1_A002 Pollen Sorghum b... 210 4e-093
gb|CW070516.1|CW070516 104_321_10526807_1_30090 Sorghum met... 223 1e-090
gb|CW333518.1|CW333518 104_831_11481987_116_36043_006 Sorgh... 214 3e-072
gb|CW347589.1|CW347589 fsbb001f007i24f0 Sorghum methylation... 256 1e-067
gb|CW358545.1|CW358545 fsbb001f025l20k0 Sorghum methylation... 234 3e-060
gb|BG047687.1|BG047687 OV1_26_F01.b1_A002 Ovary 1 (OV1) Sor... 221 3e-056
gb|CF484415.1|CF484415 POL1_25_E03.b1_A002 Pollen Sorghum b... 178 3e-051
gb|CW333499.1|CW333499 104_831_11481987_148_36044_006 Sorgh... 203 5e-051
gb|BG048012.1|BG048012 OV1_26_F01.g1_A002 Ovary 1 (OV1) Sor... 190 7e-051
gb|CW029106.1|CW029106 104_256_10499487_116_30400 Sorghum m... 120 1e-048
gb|BF586098.1|BF586098 FM1_26_F08.g1_A003 Floral-Induced Me... 186 7e-046
gb|BF421494.1|BF421494 FM1_8_D12.g1_A003 Floral-Induced Mer... 182 8e-045
gb|CN129609.1|CN129609 RHOH1_36_H07.b3_A002 Acid- and alkal... 182 8e-045
gb|BF586907.1|BF586907 FM1_31_H11.g1_A003 Floral-Induced Me... 182 2e-044
gb|CW473221.1|CW473221 fsbb001f228i05f0 Sorghum methylation... 145 2e-044
gb|CW362554.1|CW362554 fsbb001f033k13f0 Sorghum methylation... 115 1e-043
gb|BF420999.1|BF420999 FM1_5_A06.b1_A003 Floral-Induced Mer... 178 2e-043
gb|BF586175.1|BF586175 FM1_26_F08.b1_A003 Floral-Induced Me... 178 2e-043
gb|BG465293.1|BG465293 EM1_74_D12.g1_A002 Embryo 1 (EM1) So... 174 4e-042
gb|CX611383.1|CX611383 ANR1_24_G11.b1_A002 Anaerobic roots ... 173 7e-042
gb|CW298477.1|CW298477 104_781_11462600_148_35655_030 Sorgh... 74 1e-040
gb|CF480672.1|CF480672 POL1_67_E06.b1_A002 Pollen Sorghum b... 164 3e-039
gb|CX606430.1|CX606430 ANR1_3_A12.b1_A002 Anaerobic roots S... 164 4e-039
gb|CW298476.1|CW298476 104_781_11462600_116_35659_030 Sorgh... 94 1e-037
gb|CW347590.1|CW347590 fsbb001f007i24k0 Sorghum methylation... 151 2e-036
gb|CW066036.1|CW066036 104_313_10523474_114_30148 Sorghum m... 96 5e-036
gb|CF489723.1|CF489723 POL1_59_F09.b1_A002 Pollen Sorghum b... 148 2e-034
gb|CF489854.1|CF489854 POL1_61_B07.b1_A002 Pollen Sorghum b... 147 4e-034
gb|CW266285.1|CW266285 104_736_11232344_116_35282_032 Sorgh... 143 8e-033
gb|CW371735.1|CW371735 fsbb001f047f12k0 Sorghum methylation... 143 8e-033
gb|CW473222.1|CW473222 fsbb001f228i05k0 Sorghum methylation... 143 8e-033
gb|CF488326.1|CF488326 POL1_49_E06.b1_A002 Pollen Sorghum b... 143 8e-033
gb|CW297870.1|CW297870 104_780_11462273_148_35650_075 Sorgh... 94 2e-032
gb|CF482627.1|CF482627 POL1_8_D05.b1_A002 Pollen Sorghum bi... 139 1e-031
gb|BG649800.1|BG649800 RHIZ2_83_G03.b1_A003 Rhizome2 (RHIZ2... 70 1e-030
gb|CF486499.1|CF486499 POL1_38_B11.b1_A002 Pollen Sorghum b... 133 9e-030
gb|CW029105.1|CW029105 104_256_10499487_114_30399 Sorghum m... 132 1e-029
gb|CW175990.1|CW175990 104_588_11158248_148_36576_084 Sorgh... 132 1e-029
gb|CW493595.1|CW493595 fsbb001f284g24f0 Sorghum methylation... 132 1e-029
gb|CW493596.1|CW493596 fsbb001f284g24k0 Sorghum methylation... 132 2e-029
gb|BG412419.1|BG412419 OV2_33_H06.g1_A002 Ovary 2 (OV2) Sor... 131 3e-029
gb|CF485646.1|CF485646 POL1_32_F06.g1_A002 Pollen Sorghum b... 128 2e-028
gb|BG240385.1|BG240385 OV1_29_D04.b1_A002 Ovary 1 (OV1) Sor... 127 3e-028
gb|CW297869.1|CW297869 104_780_11462273_116_35646_075 Sorgh... 66 2e-027
gb|CW482127.1|CW482127 fsbb001f242a23k0 Sorghum methylation... 125 2e-027
gb|BG050704.1|BG050704 FM1_71_H08.g1_A003 Floral-Induced Me... 124 4e-027
gb|BG103595.1|BG103595 RHIZ2_38_E03.g1_A003 Rhizome2 (RHIZ2... 124 4e-027
gb|CW209297.1|CW209297 104_639_11189162_116_36992_011 Sorgh... 123 5e-027
gb|CW371734.1|CW371734 fsbb001f047f12f0 Sorghum methylation... 99 7e-026
gb|CW362555.1|CW362555 fsbb001f033k13k0 Sorghum methylation... 84 1e-025
gb|CN143330.1|CN143330 WOUND1_15_C09.g1_A002 Wounded leaves... 66 1e-024
gb|BG239815.1|BG239815 OV1_29_D04.g1_A002 Ovary 1 (OV1) Sor... 115 2e-024
gb|BG649717.1|BG649717 RHIZ2_82_G03.b1_A003 Rhizome2 (RHIZ2... 70 4e-024
gb|CW023990.1|CW023990 104_164_10434695_1_30002 Sorghum met... 112 1e-023
gb|CW111224.1|CW111224 104_484_11104188_116_34530_040 Sorgh... 111 4e-023
gb|CW470659.1|CW470659 fsbb001f223p19k0 Sorghum methylation... 111 4e-023
gb|CX607178.1|CX607178 ANR1_7_D05.b1_A002 Anaerobic roots S... 110 7e-023
gb|CW182759.1|CW182759 104_598_11164251_116_36667_010 Sorgh... 109 1e-022
gb|CW190148.1|CW190148 104_611_11174347_116_36749_070 Sorgh... 109 1e-022
gb|CW216844.1|CW216844 104_649_11195330_116_37124_001 Sorgh... 109 1e-022
gb|CW227956.1|CW227956 104_667_11206095_116_37239_054 Sorgh... 88 1e-022
gb|CW343076.1|CW343076 104_845_11487223_116_36181_028 Sorgh... 52 2e-021
>gb|CW045891.1|CW045891 104_282_10509838_114_30229 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10509838, DNA
sequence
Length = 625
Score = 354 bits (767), Expect(2) = e-128
Identities = 138/152 (90%), Positives = 145/152 (95%)
Frame = +3 / -1
Query: 297 SGAPPAPNMTEPPAGWAWSINQARSFRWNLTASAARPNPQGSYHYGQINITRTIKVMVSR 476
S APP M EPPAGWAWSINQARS RWNLT+SAARPNPQGSYHYGQINITRTI+VMVSR
Sbjct: 472 SSAPPPAEMPEPPAGWAWSINQARSIRWNLTSSAARPNPQGSYHYGQINITRTIRVMVSR 293
Query: 477 GHIDGKLRYGFNGISHRDPETPVKLAEYFNATDGVFSYNQMGDVPPAVNGPLHVIPNVIT 656
GHIDGKLRYGFNG+SHRDPETPVKLAEYFN TDGVFSYNQMGDVPPAVNGPLHV+PNVIT
Sbjct: 292 GHIDGKLRYGFNGVSHRDPETPVKLAEYFNVTDGVFSYNQMGDVPPAVNGPLHVVPNVIT 113
Query: 657 AEFRTFIEIVFENPEKSIDSLHVDGYAFFGVG 752
AEFRTFIEIVFENPEKS+DS+H+DGYAFFGVG
Sbjct: 112 AEFRTFIEIVFENPEKSLDSIHLDGYAFFGVG 17
Score = 315 bits (682), Expect(2) = 2e-089
Identities = 133/150 (88%), Positives = 134/150 (89%)
Frame = -2 / +3
Query: 751 PTPKKA*PSTWRESMLFSGFSKTISMKVRNSAVMTLGMTWRGPFTAGGTSPIWL*LNTPS 572
PTPKKA*PS W ES LFSGFSKTISMKVRNSAVMTLG TWRGPFTAGGTSPIWL*LNTPS
Sbjct: 18 PTPKKA*PSRWMESKLFSGFSKTISMKVRNSAVMTLGTTWRGPFTAGGTSPIWL*LNTPS 197
Query: 571 VALKYSASFTGVSGSLWEMPLKP*RSLPSMWPRETMTLMVRVMLIWP*W*EPCGLGRAAL 392
V LKYSASFTGVSGSLWE PLKP RSLPSMWP ETMTLMVRVMLIWP*W*EPCGLGRAAL
Sbjct: 198 VTLKYSASFTGVSGSLWETPLKPYRSLPSMWPLETMTLMVRVMLIWP*W*EPCGLGRAAL 377
Query: 391 AVRFQRNDLAWLMDQAQPAGGSVMFGAGGA 302
VRF R DLAWLMD AQPAGGS + GGA
Sbjct: 378 DVRFHRIDLAWLMDHAQPAGGSGISAGGGA 467
Score = 136 bits (292), Expect(2) = 1e-044
Identities = 53/59 (89%), Positives = 55/59 (93%)
Frame = +2 / -3
Query: 491 QAPLRLQRHLP*GPRDPREARRVLQRHRRGVQLQPDGRRAPRRERSPPCHPQCHHRRVP 667
QAP+RLQ LP GPRDPREARRVLQRHRRGVQLQPDGRRAPRRER+PPC PQCHHRRVP
Sbjct: 278 QAPVRLQWRLPQGPRDPREARRVLQRHRRGVQLQPDGRRAPRRERTPPCRPQCHHRRVP 102
Score = 127 bits (272), Expect(2) = e-128
Identities = 52/58 (89%), Positives = 53/58 (91%)
Frame = +3 / -1
Query: 141 QDVYDSLDVHVGHCLSVLVDADQAPGDYYMVASTRFIHDAKSASAVIRYAGSSGAPPA 314
QDVYDSLDVHVGHCLSVLV ADQ PGDYYMVASTRFIHDAKSA AV+RYAGSS PPA
Sbjct: 625 QDVYDSLDVHVGHCLSVLVTADQKPGDYYMVASTRFIHDAKSARAVVRYAGSSAPPPA 452
Score = 106 bits (227), Expect(3) = 4e-036
Identities = 49/63 (77%), Positives = 50/63 (79%)
Frame = -2 / +3
Query: 331 GSVMFGAGGAPLEPA*RMTAEADLASWMNRVEATM**SPGAWSASTSTERQWPTCTSSES 152
G AGG LEPA*R TA ADLASWMNRV+ATM**SPG WSA TSTERQWPT TSSES
Sbjct: 435 GGSGISAGGGALEPA*RTTALADLASWMNRVDATM**SPGFWSAVTSTERQWPTWTSSES 614
Query: 151 YTS 143
TS
Sbjct: 615 *TS 623
Score = 66.1 bits (138), Expect(2) = 1e-044
Identities = 28/41 (68%), Positives = 31/41 (75%)
Frame = +2 / -3
Query: 308 AGAEHDRATGRLGLVHQPGQVVPLEPDGQRRAAQPAGLLPL 430
A RA G LG+VHQPG+V P+EPD QR AAQPAGLLPL
Sbjct: 461 AAGRDARAAGGLGVVHQPGEVDPVEPDVQRGAAQPAGLLPL 339
Score = 51.0 bits (105), Expect(3) = 4e-036
Identities = 20/22 (90%), Positives = 20/22 (90%)
Frame = -3 / +1
Query: 654 **HWG*HGGDRSRRGARRPSGC 589
**HWG HGG RSRRGARRPSGC
Sbjct: 115 **HWGRHGGVRSRRGARRPSGC 180
Score = 39.1 bits (79), Expect(3) = 4e-036
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = -3 / +1
Query: 387 SGSSGTTWPG*WTRPSRPVARS 322
SGS+G+T PG*WT PS P AR+
Sbjct: 382 SGSTGSTSPG*WTTPSPPAARA 447
Score = 36.8 bits (74), Expect(2) = 2e-089
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = -1 / +2
Query: 233 HHVVVAGRLVGVDQHGE 183
HHVVVAG LVG D+HGE
Sbjct: 533 HHVVVAGLLVGGDEHGE 583
>gb|CF486575.1|CF486575 POL1_38_B08.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_38_B08_A002 5', mRNA sequence
Length = 727
Score = 350 bits (758), Expect(2) = e-123
Identities = 134/179 (74%), Positives = 153/179 (85%)
Frame = +3 / +3
Query: 297 SGAPPAPNMTEPPAGWAWSINQARSFRWNLTASAARPNPQGSYHYGQINITRTIKVMVSR 476
+ APP + E P+GWAWSINQARSFRWNLTASAARPNPQGSYHYGQINITRTI++ + R
Sbjct: 189 ASAPPPAKLPESPSGWAWSINQARSFRWNLTASAARPNPQGSYHYGQINITRTIRLGIGR 368
Query: 477 GHIDGKLRYGFNGISHRDPETPVKLAEYFNATDGVFSYNQMGDVPPAVNGPLHVIPNVIT 656
G +DGK R+G NG+SH DPETPVKLAEYFNATDGVF Y+ +GDVPPA + P + PNV+
Sbjct: 369 GKVDGKERFGINGVSHVDPETPVKLAEYFNATDGVFQYDLIGDVPPAKSAPTKMAPNVLR 548
Query: 657 AEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYNLLDTVSRHTIQV 833
AEFRTFIE+VFENPEKSID+ H+DGYAFF VGMGPG W+P R TYNLLDTVSRHT+QV
Sbjct: 549 AEFRTFIEVVFENPEKSIDTFHIDGYAFFAVGMGPGKWTPACRSTYNLLDTVSRHTVQV 725
Score = 270 bits (584), Expect(2) = 2e-088
Identities = 123/178 (69%), Positives = 131/178 (73%)
Frame = -2 / -1
Query: 835 YTWIVCRLTVSSRLYVFLISGDHVPGPIPTPKKA*PSTWRESMLFSGFSKTISMKVRNSA 656
YTW VCRLTVS RLYV +G H+PGP+PT K A*PS W+ SMLFSGFS T SMKVRNSA
Sbjct: 727 YTWTVCRLTVSRRLYVLRHAGVHLPGPMPTAKNA*PSMWKVSMLFSGFSNTTSMKVRNSA 548
Query: 655 VMTLGMTWRGPFTAGGTSPIWL*LNTPSVALKYSASFTGVSGSLWEMPLKP*RSLPSMWP 476
TLG G AGGTSP+ NTPSVALKYSASFTGVSGS + PL P RSLPS P
Sbjct: 547 RRTLGAILVGADLAGGTSPMRSYWNTPSVALKYSASFTGVSGSTCDTPLMPNRSLPSTLP 368
Query: 475 RETMTLMVRVMLIWP*W*EPCGLGRAALAVRFQRNDLAWLMDQAQPAGGSVMFGAGGA 302
R +LMVRVMLI P*W +PCGLGRAALAVRFQR DLAWLMD A P G S GGA
Sbjct: 367 RPMPSLMVRVMLICP*WYDPCGLGRAALAVRFQRKDLAWLMDHAHPLGLSGSLAGGGA 194
Score = 116 bits (247), Expect(2) = e-123
Identities = 47/69 (68%), Positives = 56/69 (81%)
Frame = +3 / +3
Query: 108 KLVELEGSHTLQDVYDSLDVHVGHCLSVLVDADQAPGDYYMVASTRFIHDAKSASAVIRY 287
KLVE+EGSHT+ + YDSLD+HVG CLSVLV ADQ PGDY +VASTRFI + + +AVIRY
Sbjct: 3 KLVEMEGSHTM*NDYDSLDIHVGQCLSVLVTADQKPGDYLLVASTRFIKEVSTTTAVIRY 182
Query: 288 AGSSGAPPA 314
G+S PPA
Sbjct: 183 KGASAPPPA 209
Score = 78.5 bits (165), Expect(2) = 2e-088
Identities = 41/69 (59%), Positives = 45/69 (65%)
Frame = -2 / -1
Query: 313 AGGAPLEPA*RMTAEADLASWMNRVEATM**SPGAWSASTSTERQWPTCTSSESYTSCRV 134
AGG L P *R+TA L S MNRV+AT *SPG WSA T T+R PT SSES + V
Sbjct: 208 AGGGALAPL*RITAVVVLTSLMNRVDATSR*SPGFWSAVTRTDRH*PTWMSSES*SFYMV 29
Query: 133 CEPSSSTSF 107
EPS STSF
Sbjct: 28 WEPSISTSF 2
Score = 66.1 bits (138), Expect(3) = 1e-029
Identities = 32/59 (54%), Positives = 38/59 (64%)
Frame = +2 / +2
Query: 491 QAPLRLQRHLP*GPRDPREARRVLQRHRRGVQLQPDGRRAPRRERSPPCHPQCHHRRVP 667
Q +R QR + GP DPREARRVLQRHRRGV ++P RRA + R+ Q RRVP
Sbjct: 383 QGAVRHQRRVARGPGDPREARRVLQRHRRGVPVRPHRRRAASQIRAHQDGSQRPPRRVP 559
Score = 65.2 bits (136), Expect(3) = 1e-029
Identities = 24/31 (77%), Positives = 30/31 (96%)
Frame = +2 / +2
Query: 338 RLGLVHQPGQVVPLEPDGQRRAAQPAGLLPL 430
R+G+VHQPGQV+PLEPDG+R AAQPAG++PL
Sbjct: 230 RVGVVHQPGQVLPLEPDGERGAAQPAGVVPL 322
Score = 38.6 bits (78), Expect(3) = 1e-029
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = +2 / +2
Query: 755 GAWDVVAGDEEDVQPTGHGEPAHDPGV 835
G + A E VQP GHGEPAH PGV
Sbjct: 647 GPGQMDASVPEYVQPPGHGEPAHGPGV 727
>gb|CF484935.1|CF484935 POL1_28_A11.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_28_A11_A002 5', mRNA sequence
Length = 565
Score = 297 bits (642), Expect(2) = e-118
Identities = 116/127 (91%), Positives = 120/127 (94%)
Frame = +3 / +1
Query: 297 SGAPPAPNMTEPPAGWAWSINQARSFRWNLTASAARPNPQGSYHYGQINITRTIKVMVSR 476
S APP M EPPAGWAWSINQARS RWNLT+SAARPNPQGSYHYGQINITRTI+VMVSR
Sbjct: 184 SSAPPPAEMPEPPAGWAWSINQARSIRWNLTSSAARPNPQGSYHYGQINITRTIRVMVSR 363
Query: 477 GHIDGKLRYGFNGISHRDPETPVKLAEYFNATDGVFSYNQMGDVPPAVNGPLHVIPNVIT 656
GHIDGKLRYGFNG+SHRDPETPVKLAEYFN TDGVFSYNQMGDVPPAVNGPLHV+PNVIT
Sbjct: 364 GHIDGKLRYGFNGVSHRDPETPVKLAEYFNVTDGVFSYNQMGDVPPAVNGPLHVVPNVIT 543
Query: 657 AEFRTFI 677
AEFRTFI
Sbjct: 544 AEFRTFI 564
Score = 264 bits (572), Expect(2) = 7e-077
Identities = 111/125 (88%), Positives = 112/125 (89%)
Frame = -2 / -3
Query: 676 MKVRNSAVMTLGMTWRGPFTAGGTSPIWL*LNTPSVALKYSASFTGVSGSLWEMPLKP*R 497
MKVRNSAVMTLG TWRGPFTAGGTSPIWL*LNTPSV LKYSASFTGVSGSLWE PLKP R
Sbjct: 563 MKVRNSAVMTLGTTWRGPFTAGGTSPIWL*LNTPSVTLKYSASFTGVSGSLWETPLKPYR 384
Query: 496 SLPSMWPRETMTLMVRVMLIWP*W*EPCGLGRAALAVRFQRNDLAWLMDQAQPAGGSVMF 317
SLPSMWP ETMTLMVRVMLIWP*W*EPCGLGRAAL VRF R DLAWLMD AQPAGGS +
Sbjct: 383 SLPSMWPLETMTLMVRVMLIWP*W*EPCGLGRAALDVRFHRIDLAWLMDHAQPAGGSGIS 204
Query: 316 GAGGA 302
GGA
Sbjct: 203 AGGGA 189
Score = 149 bits (321), Expect(2) = e-118
Identities = 62/68 (91%), Positives = 63/68 (92%)
Frame = +3 / +1
Query: 111 LVELEGSHTLQDVYDSLDVHVGHCLSVLVDADQAPGDYYMVASTRFIHDAKSASAVIRYA 290
LVELEGSHTLQDVYDSLDVHVGHCLSVLV ADQ PGDYYMVASTRFIHDAKSA AV+RYA
Sbjct: 1 LVELEGSHTLQDVYDSLDVHVGHCLSVLVTADQKPGDYYMVASTRFIHDAKSARAVVRYA 180
Query: 291 GSSGAPPA 314
GSS PPA
Sbjct: 181 GSSAPPPA 204
Score = 136 bits (292), Expect(2) = 1e-044
Identities = 53/59 (89%), Positives = 55/59 (93%)
Frame = +2 / +3
Query: 491 QAPLRLQRHLP*GPRDPREARRVLQRHRRGVQLQPDGRRAPRRERSPPCHPQCHHRRVP 667
QAP+RLQ LP GPRDPREARRVLQRHRRGVQLQPDGRRAPRRER+PPC PQCHHRRVP
Sbjct: 378 QAPVRLQWRLPQGPRDPREARRVLQRHRRGVQLQPDGRRAPRRERTPPCRPQCHHRRVP 554
Score = 127 bits (272), Expect(3) = 3e-042
Identities = 58/73 (79%), Positives = 59/73 (80%)
Frame = -2 / -3
Query: 331 GSVMFGAGGAPLEPA*RMTAEADLASWMNRVEATM**SPGAWSASTSTERQWPTCTSSES 152
G AGG LEPA*R TA ADLASWMNRV+ATM**SPG WSA TSTERQWPT TSSES
Sbjct: 221 GGSGISAGGGALEPA*RTTALADLASWMNRVDATM**SPGFWSAVTSTERQWPTWTSSES 42
Query: 151 YTSCRVCEPSSST 113
TSCRV EPSSST
Sbjct: 41 *TSCRVWEPSSST 3
Score = 66.1 bits (138), Expect(2) = 1e-044
Identities = 28/41 (68%), Positives = 31/41 (75%)
Frame = +2 / +3
Query: 308 AGAEHDRATGRLGLVHQPGQVVPLEPDGQRRAAQPAGLLPL 430
A RA G LG+VHQPG+V P+EPD QR AAQPAGLLPL
Sbjct: 195 AAGRDARAAGGLGVVHQPGEVDPVEPDVQRGAAQPAGLLPL 317
Score = 51.0 bits (105), Expect(3) = 3e-042
Identities = 20/22 (90%), Positives = 20/22 (90%)
Frame = -3 / -1
Query: 654 **HWG*HGGDRSRRGARRPSGC 589
**HWG HGG RSRRGARRPSGC
Sbjct: 541 **HWGRHGGVRSRRGARRPSGC 476
Score = 45.5 bits (93), Expect(2) = 7e-077
Identities = 22/41 (53%), Positives = 25/41 (60%)
Frame = -1 / -2
Query: 233 HHVVVAGRLVGVDQHGEXXXXXXXXXXXXVLQGM*ALQLDE 111
HHVVVAG LVG D+HGE VLQG+ ALQL +
Sbjct: 123 HHVVVAGLLVGGDEHGEAVADVDVERVVDVLQGVGALQLHQ 1
Score = 39.1 bits (79), Expect(3) = 3e-042
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = -3 / -1
Query: 387 SGSSGTTWPG*WTRPSRPVARS 322
SGS+G+T PG*WT PS P AR+
Sbjct: 274 SGSTGSTSPG*WTTPSPPAARA 209
>gb|CW478498.1|CW478498 fsbb001f236g18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f236g18, DNA
sequence
Length = 593
Score = 241 bits (521), Expect(2) = 7e-095
Identities = 93/127 (73%), Positives = 107/127 (84%)
Frame = +3 / +3
Query: 297 SGAPPAPNMTEPPAGWAWSINQARSFRWNLTASAARPNPQGSYHYGQINITRTIKVMVSR 476
+ APP + E P+GWAWSINQARSFRWNLTASAARPNPQGSYHYGQINITRTI++ + R
Sbjct: 213 ASAPPPAKLPESPSGWAWSINQARSFRWNLTASAARPNPQGSYHYGQINITRTIRLGIGR 392
Query: 477 GHIDGKLRYGFNGISHRDPETPVKLAEYFNATDGVFSYNQMGDVPPAVNGPLHVIPNVIT 656
G +DGK R+G NG+SH DPETPVKLAEYFNATDGVF Y+ +GDVPPA + P + PNV+
Sbjct: 393 GKVDGKERFGINGVSHVDPETPVKLAEYFNATDGVFQYDLIGDVPPAKSAPTKMAPNVLR 572
Query: 657 AEFRTFI 677
AEFRTFI
Sbjct: 573 AEFRTFI 593
Score = 181 bits (390), Expect(2) = 5e-067
Identities = 86/125 (68%), Positives = 90/125 (72%)
Frame = -2 / -2
Query: 676 MKVRNSAVMTLGMTWRGPFTAGGTSPIWL*LNTPSVALKYSASFTGVSGSLWEMPLKP*R 497
MKVRNSA TLG G AGGTSP+ NTPSVALKYSASFTGVSGS + PL P R
Sbjct: 592 MKVRNSARRTLGAILVGADLAGGTSPMRSYWNTPSVALKYSASFTGVSGSTCDTPLMPNR 413
Query: 496 SLPSMWPRETMTLMVRVMLIWP*W*EPCGLGRAALAVRFQRNDLAWLMDQAQPAGGSVMF 317
SLPS PR +LMVRVMLI P*W +PCGLGRAALAVRFQR DLAWLMD A P G S
Sbjct: 412 SLPSTLPRPMPSLMVRVMLICP*WYDPCGLGRAALAVRFQRKDLAWLMDHAHPLGLSGSL 233
Query: 316 GAGGA 302
GGA
Sbjct: 232 AGGGA 218
Score = 128 bits (275), Expect(2) = 7e-095
Identities = 52/75 (69%), Positives = 61/75 (81%)
Frame = +3 / +3
Query: 90 IQGHDMKLVELEGSHTLQDVYDSLDVHVGHCLSVLVDADQAPGDYYMVASTRFIHDAKSA 269
IQ H MKLVE+EGSHT+Q+ YDSLD+HVG CLSVLV ADQ PGDY +VASTRFI + +
Sbjct: 9 IQNHIMKLVEMEGSHTMQNDYDSLDIHVGQCLSVLVTADQKPGDYLLVASTRFIKEVSTT 188
Query: 270 SAVIRYAGSSGAPPA 314
+AVIRY G+S PPA
Sbjct: 189 TAVIRYKGASAPPPA 233
Score = 95.9 bits (203), Expect(2) = 5e-067
Identities = 46/75 (61%), Positives = 50/75 (66%)
Frame = -2 / -2
Query: 313 AGGAPLEPA*RMTAEADLASWMNRVEATM**SPGAWSASTSTERQWPTCTSSESYTSCRV 134
AGG L P *R+TA L S MNRV+AT *SPG WSA T T+R PT SSES + C V
Sbjct: 232 AGGGALAPL*RITAVVVLTSLMNRVDATSR*SPGFWSAVTRTDRH*PTWMSSES*SFCMV 53
Query: 133 CEPSSSTSFMSWPWM 89
EPS STSFM W WM
Sbjct: 52 WEPSISTSFMMWFWM 8
Score = 66.1 bits (138), Expect(3) = 4e-024
Identities = 32/59 (54%), Positives = 38/59 (64%)
Frame = +2 / +2
Query: 491 QAPLRLQRHLP*GPRDPREARRVLQRHRRGVQLQPDGRRAPRRERSPPCHPQCHHRRVP 667
Q +R QR + GP DPREARRVLQRHRRGV ++P RRA + R+ Q RRVP
Sbjct: 407 QGAVRHQRRVARGPGDPREARRVLQRHRRGVPVRPHRRRAASQIRAHQDGSQRPPRRVP 583
Score = 65.2 bits (136), Expect(3) = 4e-024
Identities = 24/31 (77%), Positives = 30/31 (96%)
Frame = +2 / +2
Query: 338 RLGLVHQPGQVVPLEPDGQRRAAQPAGLLPL 430
R+G+VHQPGQV+PLEPDG+R AAQPAG++PL
Sbjct: 254 RVGVVHQPGQVLPLEPDGERGAAQPAGVVPL 346
Score = 24.9 bits (48), Expect(3) = 4e-024
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2 / +2
Query: 89 HPGPRHEARRAGGLTY 136
HP P HEA GGL +
Sbjct: 8 HPEPHHEAGGDGGLPH 55
>gb|CF484496.1|CF484496 POL1_25_E03.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_25_E03_A002 5', mRNA sequence
Length = 545
Score = 210 bits (452), Expect(2) = 4e-093
Identities = 83/96 (86%), Positives = 87/96 (90%)
Frame = +3 / +3
Query: 603 DVPPAVNGPLHVIPNVITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEM 782
D VNGPLHV+PNVITAEFRTFIEIVFENPEKS+DS+H+DGYAFFGVGMGPG WSPE
Sbjct: 258 DPETPVNGPLHVVPNVITAEFRTFIEIVFENPEKSLDSIHLDGYAFFGVGMGPGQWSPEA 437
Query: 783 RKTYNLLDTVSRHTIQVYPRSWTAIMLTFDNAGMWS 890
R TYNLLD VSRHTIQVYPRSWTAIMLTF NAGMWS
Sbjct: 438 RVTYNLLDAVSRHTIQVYPRSWTAIMLTFYNAGMWS 545
Score = 192 bits (414), Expect(2) = 1e-084
Identities = 80/91 (87%), Positives = 81/91 (89%)
Frame = -2 / -2
Query: 889 LHMPALSNVSMIAVHDRGYTWIVCRLTVSSRLYVFLISGDHVPGPIPTPKKA*PSTWRES 710
LHMPAL NVS+IAVHD GYTWIVCRLT SSRLYV L SGDH PGPIPTPKKA*PS W ES
Sbjct: 544 LHMPAL*NVSIIAVHDLGYTWIVCRLTASSRLYVTLASGDHCPGPIPTPKKA*PSRWMES 365
Query: 709 MLFSGFSKTISMKVRNSAVMTLGMTWRGPFT 617
LFSGFSKTISMKVRNSAVMTLG TWRGPFT
Sbjct: 364 KLFSGFSKTISMKVRNSAVMTLGTTWRGPFT 272
Score = 154 bits (331), Expect(2) = 4e-093
Identities = 60/64 (93%), Positives = 63/64 (98%)
Frame = +3 / +3
Query: 354 INQARSFRWNLTASAARPNPQGSYHYGQINITRTIKVMVSRGHIDGKLRYGFNGISHRDP 533
INQARS RWNLT+SAARPNPQGSYHYGQINITRTI+VMVSRGHIDGKLRYGFNG+SHRDP
Sbjct: 84 INQARSIRWNLTSSAARPNPQGSYHYGQINITRTIRVMVSRGHIDGKLRYGFNGVSHRDP 263
Query: 534 ETPV 545
ETPV
Sbjct: 264 ETPV 275
Score = 143 bits (307), Expect(2) = 1e-084
Identities = 59/65 (90%), Positives = 59/65 (90%)
Frame = -2 / -2
Query: 547 FTGVSGSLWEMPLKP*RSLPSMWPRETMTLMVRVMLIWP*W*EPCGLGRAALAVRFQRND 368
FTGVSGSLWE PLKP RSLPSMWP ETMTLMVRVMLIWP*W*EPCGLGRAAL VRF R D
Sbjct: 277 FTGVSGSLWETPLKPYRSLPSMWPLETMTLMVRVMLIWP*W*EPCGLGRAALDVRFHRID 98
Query: 367 LAWLM 353
LAWLM
Sbjct: 97 LAWLM 83
Score = 94.1 bits (199), Expect(4) = 1e-042
Identities = 36/45 (80%), Positives = 38/45 (84%)
Frame = +2 / +2
Query: 755 GAWDVVAGDEEDVQPTGHGEPAHDPGVPAVMDGDHADIRQRGHVE 889
GAW VVAG E DVQP G GEPAHDPGVP VMDGD+AD+ QRGHVE
Sbjct: 410 GAWAVVAGGEGDVQPAGRGEPAHDPGVPEVMDGDYADVLQRGHVE 544
Score = 52.8 bits (109), Expect(4) = 1e-042
Identities = 21/26 (80%), Positives = 23/26 (88%)
Frame = +2 / +2
Query: 353 HQPGQVVPLEPDGQRRAAQPAGLLPL 430
HQPG+V P+EPD QR AAQPAGLLPL
Sbjct: 83 HQPGEVDPVEPDVQRGAAQPAGLLPL 160
Score = 47.3 bits (97), Expect(4) = 1e-042
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +2 / +2
Query: 617 RERSPPCHPQCHHRRVP 667
RER+PPC PQCHHRRVP
Sbjct: 272 RERTPPCRPQCHHRRVP 322
Score = 37.7 bits (76), Expect(4) = 1e-042
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = +2 / +2
Query: 491 QAPLRLQRHLP*GPRDPRE 547
QAP+RLQ LP GPRDPRE
Sbjct: 221 QAPVRLQWRLPQGPRDPRE 277
>gb|CW070516.1|CW070516 104_321_10526807_1_30090 Sorghum methylation filtered library (LibID:
104) Sorghum bicolor genomic clone 10526807, DNA sequence
Length = 622
Score = 223 bits (482), Expect(2) = 1e-090
Identities = 89/100 (89%), Positives = 91/100 (91%)
Frame = +3 / -3
Query: 753 MGPGTWSPEMRKTYNLLDTVSRHTIQVYPRSWTAIMLTFDNAGMWSVRSNVWERYYLGEQ 932
MGPG WSPE R TYNLLD VSRHTIQVYPRSWTAIMLTFDNAGMWSVRSN+WERYYLGEQ
Sbjct: 350 MGPGQWSPEARVTYNLLDAVSRHTIQVYPRSWTAIMLTFDNAGMWSVRSNIWERYYLGEQ 171
Query: 933 FYISVISPARSLRDEYNMPDNALRCGKVVGLPLPPSYAPA 1052
FYISVISP SLRDEYNMPDN LR GKVVGLPLPPSY+ A
Sbjct: 170 FYISVISPEHSLRDEYNMPDNDLRRGKVVGLPLPPSYSAA 51
Score = 198 bits (426), Expect(2) = 3e-081
Identities = 85/100 (85%), Positives = 90/100 (90%)
Frame = -2 / +1
Query: 1051 AGA*DGGSGSPTTLPQRRALSGMLYSSRSDRAGEMTLM*NCSPR*YRSQTLDRTLHMPAL 872
A *DGGSGSPTTLP+RR+LSGMLYSSRS+ +GEMTLM*NCSPR* RSQ LDRTLHMPAL
Sbjct: 52 AAE*DGGSGSPTTLPRRRSLSGMLYSSRSECSGEMTLM*NCSPR**RSQMLDRTLHMPAL 231
Query: 871 SNVSMIAVHDRGYTWIVCRLTVSSRLYVFLISGDHVPGPI 752
SNVS+IAVHD GYTWIVCRLT SSRLYV L SGDH PGPI
Sbjct: 232 SNVSIIAVHDLGYTWIVCRLTASSRLYVTLASGDHCPGPI 351
Score = 186 bits (400), Expect(2) = 4e-053
Identities = 85/101 (84%), Positives = 86/101 (85%)
Frame = -1 / +3
Query: 1094 SEHEVKTAPSSSLARGGVGWRQRQPHDLAAAEGVVGHVVLVAQRPRRRDDADVELLPEVV 915
SEHE A LARGGVG RQRQPHDLAAAE VV HVVLVAQR RRDDADVELLPEVV
Sbjct: 9 SEHEGPGACLVILARGGVGRRQRQPHDLAAAEVVVRHVVLVAQRVLRRDDADVELLPEVV 188
Query: 914 PLPDVGPDAPHARVVECQHDRRP*PRVHLDRVPAHRVQ*VV 792
LPDVGPDAPHARVVE QH+RRP*PRVHLDRVPAHRVQ VV
Sbjct: 189 ALPDVGPDAPHARVVERQHNRRP*PRVHLDRVPAHRVQQVV 311
Score = 147 bits (316), Expect(3) = 8e-059
Identities = 58/68 (85%), Positives = 61/68 (89%)
Frame = +2 / -2
Query: 755 GAWDVVAGDEEDVQPTGHGEPAHDPGVPAVMDGDHADIRQRGHVERPVQRLGAVLPRGAV 934
GAW VVAG E DVQP G GEPAHDPGVP VMDGD+AD+RQRGHVERPVQ LGA+LPRGAV
Sbjct: 348 GAWAVVAGGEGDVQPAGRGEPAHDPGVPEVMDGDYADVRQRGHVERPVQHLGALLPRGAV 169
Query: 935 LHQRHLAG 958
LHQRHLAG
Sbjct: 168 LHQRHLAG 145
Score = 132 bits (283), Expect(2) = 1e-090
Identities = 51/58 (87%), Positives = 56/58 (96%)
Frame = +3 / -3
Query: 579 VFSYNQMGDVPPAVNGPLHVIPNVITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVG 752
VFSYNQMGDVPPAVNGPLHV+PNVITAEF TFIE+V ENPEKS+DS+H+DGYAFFGVG
Sbjct: 620 VFSYNQMGDVPPAVNGPLHVVPNVITAEFGTFIEMVLENPEKSLDSIHLDGYAFFGVG 447
Score = 127 bits (271), Expect(2) = 3e-081
Identities = 53/58 (91%), Positives = 53/58 (91%)
Frame = -2 / +1
Query: 751 PTPKKA*PSTWRESMLFSGFSKTISMKVRNSAVMTLGMTWRGPFTAGGTSPIWL*LNT 578
PTPKKA*PS W ES LFSGFSKTISMKV NSAVMTLG TWRGPFTAGGTSPIWL*LNT
Sbjct: 448 PTPKKA*PSRWMESKLFSGFSKTISMKVPNSAVMTLGTTWRGPFTAGGTSPIWL*LNT 621
Score = 72.5 bits (152), Expect(3) = 8e-059
Identities = 26/29 (89%), Positives = 27/29 (93%)
Frame = +2 / -2
Query: 578 GVQLQPDGRRAPRRERSPPCHPQCHHRRV 664
GVQLQPDG RAPRRER+PPC PQCHHRRV
Sbjct: 621 GVQLQPDGGRAPRRERTPPCRPQCHHRRV 535
Score = 53.3 bits (110), Expect(3) = 8e-059
Identities = 20/28 (71%), Positives = 21/28 (75%)
Frame = +1 / -1
Query: 1012 RSWGCRCRHPTPPRAKDDEGAVFTSCSD 1095
RSWGCRCR PTPPRAK + A SCSD
Sbjct: 91 RSWGCRCRRPTPPRAKMTKQAPGPSCSD 8
Score = 47.8 bits (98), Expect(2) = 4e-053
Identities = 19/22 (86%), Positives = 19/22 (86%)
Frame = -3 / +2
Query: 654 **HWG*HGGDRSRRGARRPSGC 589
**HWG HGG RSRRGAR PSGC
Sbjct: 545 **HWGRHGGVRSRRGARPPSGC 610
>gb|CW333518.1|CW333518 104_831_11481987_116_36043_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481987, DNA
sequence
Length = 600
Score = 214 bits (461), Expect(2) = 3e-072
Identities = 80/97 (82%), Positives = 88/97 (90%)
Frame = +3 / +1
Query: 753 MGPGTWSPEMRKTYNLLDTVSRHTIQVYPRSWTAIMLTFDNAGMWSVRSNVWERYYLGEQ 932
MGPG W+P R TYNLLDTVSRHT+QVYPRSWTA+M+TFDNAGMWS+RSN+WER YLGEQ
Sbjct: 214 MGPGKWTPACRSTYNLLDTVSRHTVQVYPRSWTAVMMTFDNAGMWSIRSNIWERNYLGEQ 393
Query: 933 FYISVISPARSLRDEYNMPDNALRCGKVVGLPLPPSY 1043
YISV SP RSLRDEYNMP+ +LRCGKVVGLPLPPSY
Sbjct: 394 LYISVTSPERSLRDEYNMPETSLRCGKVVGLPLPPSY 504
Score = 170 bits (366), Expect(2) = 4e-054
Identities = 72/97 (74%), Positives = 81/97 (83%)
Frame = -2 / -2
Query: 1042 *DGGSGSPTTLPQRRALSGMLYSSRSDRAGEMTLM*NCSPR*YRSQTLDRTLHMPALSNV 863
*DGGSG PTTLPQRR +SGMLYSS SDR+GE+TLM +CSPR*+ SQ LDR LHMPALSNV
Sbjct: 503 *DGGSGRPTTLPQRRLVSGMLYSSLSDRSGEVTLMYSCSPR*FLSQMLDRILHMPALSNV 324
Query: 862 SMIAVHDRGYTWIVCRLTVSSRLYVFLISGDHVPGPI 752
+ AVHD GYTW VCRLTVS RLYV +G H+PGP+
Sbjct: 323 IITAVHDLGYTWTVCRLTVSRRLYVLRHAGVHLPGPM 213
Score = 144 bits (310), Expect = 2e-033
Identities = 64/86 (74%), Positives = 68/86 (79%)
Frame = -1 / -1
Query: 1049 GGVGWRQRQPHDLAAAEGVVGHVVLVAQRPRRRDDADVELLPEVVPLPDVGPDAPHARVV 870
G VG RQ Q DLAAAE + HVVLV +RP RR DADV+LL EV+PLPDVGPD PHARVV
Sbjct: 510 GEVGRRQWQADDLAAAEAGLWHVVLVPERPLRRGDADVQLLAEVIPLPDVGPDTPHARVV 331
Query: 869 ECQHDRRP*PRVHLDRVPAHRVQ*VV 792
E H RRP PRVHLDRVPAHRVQ VV
Sbjct: 330 ERHHHRRPRPRVHLDRVPAHRVQEVV 253
Score = 105 bits (224), Expect = 2e-021
Identities = 44/68 (64%), Positives = 48/68 (70%)
Frame = +2 / +3
Query: 755 GAWDVVAGDEEDVQPTGHGEPAHDPGVPAVMDGDHADIRQRGHVERPVQRLGAVLPRGAV 934
G + A E VQP GHGEPAH PGVP V+DG D+RQRGHVE PVQ LG LPR A
Sbjct: 216 GPGQMDASVPEYVQPPGHGEPAHGPGVPEVVDGGDDDVRQRGHVEYPVQHLGEELPRRAA 395
Query: 935 LHQRHLAG 958
+HQRHLAG
Sbjct: 396 VHQRHLAG 419
Score = 80.8 bits (170), Expect(2) = 3e-072
Identities = 30/37 (81%), Positives = 34/37 (91%)
Frame = +3 / +2
Query: 642 PNVITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVG 752
PNV+ AEFRTFIE+VFENPEKSID+ H+DGYAFF VG
Sbjct: 5 PNVLRAEFRTFIEVVFENPEKSIDTFHIDGYAFFAVG 115
Score = 63.8 bits (133), Expect(2) = 4e-054
Identities = 28/37 (75%), Positives = 29/37 (78%)
Frame = -2 / -1
Query: 751 PTPKKA*PSTWRESMLFSGFSKTISMKVRNSAVMTLG 641
PT K A*PS W+ SMLFSGFS T SMKVRNSA TLG
Sbjct: 114 PTAKNA*PSMWKVSMLFSGFSNTTSMKVRNSARRTLG 4
>gb|CW347589.1|CW347589 fsbb001f007i24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f007i24, DNA
sequence
Length = 523
Score = 256 bits (553), Expect(2) = 1e-067
Identities = 99/129 (76%), Positives = 113/129 (87%)
Frame = +3 / +1
Query: 366 RSFRWNLTASAARPNPQGSYHYGQINITRTIKVMVSRGHIDGKLRYGFNGISHRDPETPV 545
RSFRWNLTASAARPNPQGSYHYGQINITRTI++ + RG +DGK R+G NG+SH DPETPV
Sbjct: 1 RSFRWNLTASAARPNPQGSYHYGQINITRTIRLGIGRGKVDGKERFGINGVSHVDPETPV 180
Query: 546 KLAEYFNATDGVFSYNQMGDVPPAVNGPLHVIPNVITAEFRTFIEIVFENPEKSIDSLHV 725
KLAEYFNATDGVF Y+ +GDVPPA + P + PNV+ AEFRTFIE+VFENPEKSID+ H+
Sbjct: 181 KLAEYFNATDGVFQYDLIGDVPPAKSAPTKMAPNVLRAEFRTFIEVVFENPEKSIDTFHI 360
Query: 726 DGYAFFGVG 752
DGYAFF VG
Sbjct: 361 DGYAFFAVG 387
Score = 193 bits (417), Expect = 4e-048
Identities = 91/128 (71%), Positives = 96/128 (75%)
Frame = -2 / -3
Query: 751 PTPKKA*PSTWRESMLFSGFSKTISMKVRNSAVMTLGMTWRGPFTAGGTSPIWL*LNTPS 572
PT K A*PS W+ SMLFSGFS T SMKVRNSA TLG G AGGTSP+ NTPS
Sbjct: 386 PTAKNA*PSMWKVSMLFSGFSNTTSMKVRNSARRTLGAILVGADLAGGTSPMRSYWNTPS 207
Query: 571 VALKYSASFTGVSGSLWEMPLKP*RSLPSMWPRETMTLMVRVMLIWP*W*EPCGLGRAAL 392
VALKYSASFTGVSGS + PL P RSLPS PR +LMVRVMLI P*W +PCGLGRAAL
Sbjct: 206 VALKYSASFTGVSGSTCDTPLMPNRSLPSTLPRPMPSLMVRVMLICP*WYDPCGLGRAAL 27
Query: 391 AVRFQRND 368
AVRFQR D
Sbjct: 26 AVRFQRKD 3
Score = 23.5 bits (45), Expect(2) = 1e-067
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +3 / +3
Query: 753 MGPGTWSPEMR 785
MGPG W+P R
Sbjct: 486 MGPGKWTPACR 518
>gb|CW358545.1|CW358545 fsbb001f025l20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f025l20, DNA
sequence
Length = 616
Score = 234 bits (505), Expect = 3e-060
Identities = 97/185 (52%), Positives = 123/185 (66%)
Frame = +3 / +3
Query: 27 AGKTYRLRVCNTGIKASLNFRIQGHDMKLVELEGSHTLQDVYDSLDVHVGHCLSVLVDAD 206
AG+TYR R+ N G+ SLN R QGH MKLVE+EGSHT+Q Y SLDVH+G SVL+ AD
Sbjct: 27 AGRTYRFRITNVGLATSLNIRFQGHTMKLVEVEGSHTMQTTYSSLDVHLGQSYSVLLTAD 206
Query: 207 QAPGDYYMVASTRFIHDAKSASAVIRYAGSSGAPPAPNMTEPPAGWAWSINQARSFRWNL 386
Q DY +V STRF S +AV+ Y S+G P P WS+NQARS RWNL
Sbjct: 207 QPGFDYAVVVSTRFTA*IISTTAVLHYTNSAGKAPGSLPGGPTIQIDWSLNQARSIRWNL 386
Query: 387 TASAARPNPQGSYHYGQINITRTIKVMVSRGHIDGKLRYGFNGISHRDPETPVKLAEYFN 566
TAS RPNPQGSYHYG + +TRTI++ S ++GK RY N +S+ P+TP+K+A+Y+
Sbjct: 387 TASGPRPNPQGSYHYGLVPVTRTIRLANSAAAVNGKQRYAVNSVSYVSPDTPLKVADYYK 566
Query: 567 ATDGV 581
G+
Sbjct: 567 IGGGL 581
Score = 95.0 bits (201), Expect(2) = 5e-032
Identities = 44/97 (45%), Positives = 54/97 (55%)
Frame = -2 / -1
Query: 310 GGAPLEPA*RMTAEADLASWMNRVEATM**SPGAWSASTSTERQWPTCTSSESYTSCRVC 131
G P E * TA ++ + RVE T *S WSA +STE WP CTS + C V
Sbjct: 310 GALPAELV*CRTAVVEMI*AVKRVETTTA*SKPGWSAVSSTE*DWPRCTSRDE*VVCMVW 131
Query: 130 EPSSSTSFMSWPWMRKLSDALIPVLHTRRRYVLPASK 20
+PS+STSFM WPW R + P L R RYV PA++
Sbjct: 130 DPSTSTSFMVWPWNRMFREVARPTLVIRNRYVRPANE 20
Score = 65.2 bits (136), Expect(2) = 5e-032
Identities = 35/84 (41%), Positives = 43/84 (51%)
Frame = -2 / -1
Query: 595 WL*LNTPSVALKYSASFTGVSGSLWEMPLKP*RSLPSMWPRETMTLMVRVMLIWP*W*EP 416
W P L SA+ +GVSG ++ *R P E + MVRV P*W +P
Sbjct: 595 WCPRRRPPPIL**SATLSGVSGLTYDTLFTA*RCFPLTAAAELASRMVRVTGTRP*WYDP 416
Query: 415 CGLGRAALAVRFQRNDLAWLMDQA 344
CGLG LAVRF + AWL DQ+
Sbjct: 415 CGLGLGPLAVRFHLIERAWLSDQS 344
>gb|BG047687.1|BG047687 OV1_26_F01.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 437
Score = 221 bits (476), Expect = 3e-056
Identities = 87/97 (89%), Positives = 89/97 (91%)
Frame = +3 / +3
Query: 762 GTWSPEMRKTYNLLDTVSRHTIQVYPRSWTAIMLTFDNAGMWSVRSNVWERYYLGEQFYI 941
G WSPE R TYNLLD VSRHTIQVYPRSWTAIMLTFDNAGMWSVRSN+WERYYLGEQFYI
Sbjct: 3 GQWSPEARVTYNLLDAVSRHTIQVYPRSWTAIMLTFDNAGMWSVRSNIWERYYLGEQFYI 182
Query: 942 SVISPARSLRDEYNMPDNALRCGKVVGLPLPPSYAPA 1052
SVISP SLRDEYNMPDN LRCGKVVGLPLPPSY+ A
Sbjct: 183 SVISPEHSLRDEYNMPDNDLRCGKVVGLPLPPSYSAA 293
Score = 192 bits (413), Expect = 1e-047
Identities = 83/97 (85%), Positives = 87/97 (89%)
Frame = -2 / -2
Query: 1051 AGA*DGGSGSPTTLPQRRALSGMLYSSRSDRAGEMTLM*NCSPR*YRSQTLDRTLHMPAL 872
A *DGGSGSPTTLPQRR+LSGMLYSSRS+ +GEMTLM*NCSPR* RSQ LDRTLHMPAL
Sbjct: 292 AAE*DGGSGSPTTLPQRRSLSGMLYSSRSECSGEMTLM*NCSPR**RSQMLDRTLHMPAL 113
Query: 871 SNVSMIAVHDRGYTWIVCRLTVSSRLYVFLISGDHVP 761
SNVS+IAVHD GYTWIVCRLT SSRLYV L SGDH P
Sbjct: 112 SNVSIIAVHDLGYTWIVCRLTASSRLYVTLASGDHCP 2
Score = 186 bits (400), Expect = 9e-046
Identities = 85/101 (84%), Positives = 86/101 (85%)
Frame = -1 / -1
Query: 1094 SEHEVKTAPSSSLARGGVGWRQRQPHDLAAAEGVVGHVVLVAQRPRRRDDADVELLPEVV 915
SEHE A LARGGVG RQRQPHDLAAAE VV HVVLVAQR RRDDADVELLPEVV
Sbjct: 335 SEHEGPGACLVILARGGVGRRQRQPHDLAAAEVVVRHVVLVAQRVLRRDDADVELLPEVV 156
Query: 914 PLPDVGPDAPHARVVECQHDRRP*PRVHLDRVPAHRVQ*VV 792
LPDVGPDAPHARVVE QH+RRP*PRVHLDRVPAHRVQ VV
Sbjct: 155 ALPDVGPDAPHARVVERQHNRRP*PRVHLDRVPAHRVQQVV 33
Score = 143 bits (306), Expect(2) = 9e-043
Identities = 56/66 (84%), Positives = 59/66 (89%)
Frame = +2 / +2
Query: 761 WDVVAGDEEDVQPTGHGEPAHDPGVPAVMDGDHADIRQRGHVERPVQRLGAVLPRGAVLH 940
W VVAG E DVQP G GEPAHDPGVP VMDGD+AD+RQRGHVERPVQ LGA+LPRGAVLH
Sbjct: 2 WAVVAGGEGDVQPAGRGEPAHDPGVPEVMDGDYADVRQRGHVERPVQHLGALLPRGAVLH 181
Query: 941 QRHLAG 958
QRHLAG
Sbjct: 182 QRHLAG 199
Score = 53.3 bits (110), Expect(2) = 9e-043
Identities = 20/28 (71%), Positives = 21/28 (75%)
Frame = +1 / +1
Query: 1012 RSWGCRCRHPTPPRAKDDEGAVFTSCSD 1095
RSWGCRCR PTPPRAK + A SCSD
Sbjct: 253 RSWGCRCRRPTPPRAKMTKQAPGPSCSD 336
>gb|CF484415.1|CF484415 POL1_25_E03.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_25_E03_A002 3', mRNA sequence
Length = 564
Score = 178 bits (384), Expect(4) = 3e-051
Identities = 70/76 (92%), Positives = 72/76 (94%)
Frame = +3 / +1
Query: 825 IQVYPRSWTAIMLTFDNAGMWSVRSNVWERYYLGEQFYISVISPARSLRDEYNMPDNALR 1004
IQVYPRSWTAIMLTFDNAGMWSVRSN+WERYYLGEQFYISVISP SLRDEYNMPDN LR
Sbjct: 1 IQVYPRSWTAIMLTFDNAGMWSVRSNIWERYYLGEQFYISVISPEHSLRDEYNMPDNDLR 180
Query: 1005 CGKVVGLPLPPSYAPA 1052
CGKVVGLPLPPSY+ A
Sbjct: 181 CGKVVGLPLPPSYSAA 228
Score = 165 bits (354), Expect(4) = 8e-047
Identities = 75/90 (83%), Positives = 76/90 (84%)
Frame = -1 / -1
Query: 1094 SEHEVKTAPSSSLARGGVGWRQRQPHDLAAAEGVVGHVVLVAQRPRRRDDADVELLPEVV 915
SEHE A LARGGVG RQRQPHDLAAAE VV HVVLVAQR RRDDADVELLPEVV
Sbjct: 270 SEHEGPGACLVILARGGVGRRQRQPHDLAAAEVVVRHVVLVAQRVLRRDDADVELLPEVV 91
Query: 914 PLPDVGPDAPHARVVECQHDRRP*PRVHLD 825
LPDVGPDAPHARVVE QH+RRP*PRVHLD
Sbjct: 90 ALPDVGPDAPHARVVERQHNRRP*PRVHLD 1
Score = 150 bits (323), Expect(3) = 1e-037
Identities = 65/75 (86%), Positives = 69/75 (92%)
Frame = -2 / -2
Query: 1051 AGA*DGGSGSPTTLPQRRALSGMLYSSRSDRAGEMTLM*NCSPR*YRSQTLDRTLHMPAL 872
A *DGGSGSPTTLPQRR+LSGMLYSSRS+ +GEMTLM*NCSPR* RSQ LDRTLHMPAL
Sbjct: 227 AAE*DGGSGSPTTLPQRRSLSGMLYSSRSECSGEMTLM*NCSPR**RSQMLDRTLHMPAL 48
Query: 871 SNVSMIAVHDRGYTW 827
SNVS+IAVHD GYTW
Sbjct: 47 SNVSIIAVHDLGYTW 3
Score = 100 bits (213), Expect(4) = 6e-034
Identities = 39/44 (88%), Positives = 42/44 (95%)
Frame = +2 / +3
Query: 827 PGVPAVMDGDHADIRQRGHVERPVQRLGAVLPRGAVLHQRHLAG 958
PGVP VMDGD+AD+RQRGHVERPVQ LGA+LPRGAVLHQRHLAG
Sbjct: 3 PGVPEVMDGDYADVRQRGHVERPVQHLGALLPRGAVLHQRHLAG 134
Score = 53.3 bits (110), Expect(4) = 6e-034
Identities = 20/28 (71%), Positives = 21/28 (75%)
Frame = +1 / +2
Query: 1012 RSWGCRCRHPTPPRAKDDEGAVFTSCSD 1095
RSWGCRCR PTPPRAK + A SCSD
Sbjct: 188 RSWGCRCRRPTPPRAKMTKQAPGPSCSD 271
Score = 32.2 bits (64), Expect(4) = 3e-051
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = +3 / +3
Query: 1281 KNNHCNGSYIYFYLNI 1328
K NHCNGSYI YL I
Sbjct: 516 KKNHCNGSYI*LYLPI 563
Score = 30.4 bits (60), Expect(4) = 3e-051
Identities = 10/12 (83%), Positives = 12/12 (100%)
Frame = +3 / +1
Query: 1242 ILRCPLKSL*WG 1277
++RCPLKSL*WG
Sbjct: 472 LMRCPLKSL*WG 507
Score = 28.6 bits (56), Expect(4) = 8e-047
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1 / -2
Query: 1328 NVKIKVYITPITMIVF 1281
N ++K YITPITMI F
Sbjct: 563 NGEVKSYITPITMIFF 516
Score = 28.1 bits (55), Expect(4) = 8e-047
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -2 / -2
Query: 1285 FFKPHYSDLRGHL 1247
F +PHY+D RGHL
Sbjct: 515 F*EPHYNDFRGHL 477
Score = 28.1 bits (55), Expect(3) = 1e-037
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = -3 / -1
Query: 1317 KSIYNSHYNDCF 1282
K IYNSHYND F
Sbjct: 552 KVIYNSHYNDFF 517
Score = 27.6 bits (54), Expect(4) = 6e-034
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2 / +2
Query: 1280 KKQSL*WELYILLS*H 1327
KK+SL*WELY+ L H
Sbjct: 515 KKKSL*WELYMTLPPH 562
Score = 26.3 bits (51), Expect(4) = 6e-034
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +1 / +2
Query: 1210 NENARIYLLM*S*DALSNHCNGV 1278
NE I + *DAL NHCNGV
Sbjct: 440 NERMNISYM*P**DAL*NHCNGV 508
Score = 25.4 bits (49), Expect(4) = 3e-051
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +2 / +3
Query: 1148 KRTKTKEA*GRE 1183
KRTKTKEA*G E
Sbjct: 366 KRTKTKEA*GGE 401
Score = 24.4 bits (47), Expect(4) = 8e-047
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -2 / -2
Query: 1180 PSLGFLRLCSF 1148
PSL F RLCSF
Sbjct: 398 PSLRFFRLCSF 366
Score = 22.6 bits (43), Expect(3) = 1e-037
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -1 / -1
Query: 1277 TPLQ*FERAS 1248
TPLQ*F+RAS
Sbjct: 507 TPLQ*FQRAS 478
>gb|CW333499.1|CW333499 104_831_11481987_148_36044_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481987, DNA
sequence
Length = 661
Score = 203 bits (438), Expect = 5e-051
Identities = 77/96 (80%), Positives = 86/96 (89%)
Frame = +3 / -3
Query: 756 GPGTWSPEMRKTYNLLDTVSRHTIQVYPRSWTAIMLTFDNAGMWSVRSNVWERYYLGEQF 935
GPG +P R TYNLLDT+SRHT+QVYPRSWTA+M+TFDNAGMWS+RSN+WER YLGEQ
Sbjct: 647 GPGK*TPACRSTYNLLDTLSRHTVQVYPRSWTAVMMTFDNAGMWSIRSNIWERNYLGEQL 468
Query: 936 YISVISPARSLRDEYNMPDNALRCGKVVGLPLPPSY 1043
YISV SP RSLRDEYNMP+ +LRCGKVVGLPLPPSY
Sbjct: 467 YISVTSPERSLRDEYNMPETSLRCGKVVGLPLPPSY 360
Score = 167 bits (360), Expect = 3e-040
Identities = 71/96 (73%), Positives = 79/96 (82%)
Frame = -2 / +1
Query: 1042 *DGGSGSPTTLPQRRALSGMLYSSRSDRAGEMTLM*NCSPR*YRSQTLDRTLHMPALSNV 863
*DGGSG PTTLPQRR +SGMLYSS SDR+GE+TLM +CSPR*+ SQ LDR LHMPALSNV
Sbjct: 361 *DGGSGRPTTLPQRRLVSGMLYSSLSDRSGEVTLMYSCSPR*FLSQMLDRILHMPALSNV 540
Query: 862 SMIAVHDRGYTWIVCRLTVSSRLYVFLISGDHVPGP 755
+ AVHD GYTW VCRL VS RLYV +G H+PGP
Sbjct: 541 IITAVHDLGYTWTVCRLNVSRRLYVLRHAGVHLPGP 648
Score = 141 bits (302), Expect = 3e-032
Identities = 63/86 (73%), Positives = 67/86 (77%)
Frame = -1 / +3
Query: 1049 GGVGWRQRQPHDLAAAEGVVGHVVLVAQRPRRRDDADVELLPEVVPLPDVGPDAPHARVV 870
G VG RQ Q DLAAAE + HVVLV +RP RR DADV+LL EV+PLPDVGPD PHARVV
Sbjct: 354 GEVGRRQWQADDLAAAEAGLWHVVLVPERPLRRGDADVQLLAEVIPLPDVGPDTPHARVV 533
Query: 869 ECQHDRRP*PRVHLDRVPAHRVQ*VV 792
E H RRP PRVHLDRVPA RVQ VV
Sbjct: 534 ERHHHRRPRPRVHLDRVPAQRVQEVV 611
>gb|BG048012.1|BG048012 OV1_26_F01.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 551
Score = 190 bits (410), Expect(3) = 7e-051
Identities = 75/81 (92%), Positives = 77/81 (95%)
Frame = +3 / +3
Query: 810 VSRHTIQVYPRSWTAIMLTFDNAGMWSVRSNVWERYYLGEQFYISVISPARSLRDEYNMP 989
VSRHTIQVYPRSWTAIMLTFDNAGMWSVRSN+WERYYLGEQFYISVISP SLRDEYNMP
Sbjct: 3 VSRHTIQVYPRSWTAIMLTFDNAGMWSVRSNIWERYYLGEQFYISVISPEHSLRDEYNMP 182
Query: 990 DNALRCGKVVGLPLPPSYAPA 1052
DN LRCGKVVGLPLPPSY+ A
Sbjct: 183 DNDLRCGKVVGLPLPPSYSAA 245
Score = 177 bits (382), Expect(3) = 2e-047
Identities = 80/95 (84%), Positives = 81/95 (85%)
Frame = -1 / -1
Query: 1094 SEHEVKTAPSSSLARGGVGWRQRQPHDLAAAEGVVGHVVLVAQRPRRRDDADVELLPEVV 915
SEHE A LARGGVG RQRQPHDLAAAE VV HVVLVAQR RRDDADVELLPEVV
Sbjct: 287 SEHEGPGACLVILARGGVGRRQRQPHDLAAAEVVVRHVVLVAQRVLRRDDADVELLPEVV 108
Query: 914 PLPDVGPDAPHARVVECQHDRRP*PRVHLDRVPAH 810
LPDVGPDAPHARVVE QH+RRP*PRVHLDRVPAH
Sbjct: 107 ALPDVGPDAPHARVVERQHNRRP*PRVHLDRVPAH 3
Score = 165 bits (354), Expect = 2e-039
Identities = 71/81 (87%), Positives = 75/81 (92%)
Frame = -2 / -2
Query: 1051 AGA*DGGSGSPTTLPQRRALSGMLYSSRSDRAGEMTLM*NCSPR*YRSQTLDRTLHMPAL 872
A *DGGSGSPTTLPQRR+LSGMLYSSRS+ +GEMTLM*NCSPR* RSQ LDRTLHMPAL
Sbjct: 244 AAE*DGGSGSPTTLPQRRSLSGMLYSSRSECSGEMTLM*NCSPR**RSQMLDRTLHMPAL 65
Query: 871 SNVSMIAVHDRGYTWIVCRLT 809
SNVS+IAVHD GYTWIVCRLT
Sbjct: 64 SNVSIIAVHDLGYTWIVCRLT 2
Score = 116 bits (249), Expect(3) = 4e-036
Identities = 45/50 (90%), Positives = 48/50 (96%)
Frame = +2 / +2
Query: 809 GEPAHDPGVPAVMDGDHADIRQRGHVERPVQRLGAVLPRGAVLHQRHLAG 958
GEPAHDPGVP VMDGD+AD+RQRGHVERPVQ LGA+LPRGAVLHQRHLAG
Sbjct: 2 GEPAHDPGVPEVMDGDYADVRQRGHVERPVQHLGALLPRGAVLHQRHLAG 151
Score = 53.3 bits (110), Expect(3) = 4e-036
Identities = 20/28 (71%), Positives = 21/28 (75%)
Frame = +1 / +1
Query: 1012 RSWGCRCRHPTPPRAKDDEGAVFTSCSD 1095
RSWGCRCR PTPPRAK + A SCSD
Sbjct: 205 RSWGCRCRRPTPPRAKMTKQAPGPSCSD 288
Score = 30.4 bits (60), Expect(3) = 7e-051
Identities = 10/12 (83%), Positives = 12/12 (100%)
Frame = +3 / +3
Query: 1242 ILRCPLKSL*WG 1277
++RCPLKSL*WG
Sbjct: 489 LMRCPLKSL*WG 524
Score = 28.1 bits (55), Expect(3) = 2e-047
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -2 / -2
Query: 1285 FFKPHYSDLRGHL 1247
F +PHY+D RGHL
Sbjct: 532 F*EPHYNDFRGHL 494
Score = 26.3 bits (51), Expect(3) = 4e-036
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +1 / +1
Query: 1210 NENARIYLLM*S*DALSNHCNGV 1278
NE I + *DAL NHCNGV
Sbjct: 457 NERMNISYM*P**DAL*NHCNGV 525
Score = 25.4 bits (49), Expect(3) = 7e-051
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +2 / +2
Query: 1148 KRTKTKEA*GRE 1183
KRTKTKEA*G E
Sbjct: 383 KRTKTKEA*GGE 418
Score = 24.4 bits (47), Expect(3) = 2e-047
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -2 / -2
Query: 1180 PSLGFLRLCSF 1148
PSL F RLCSF
Sbjct: 415 PSLRFFRLCSF 383
>gb|CW029106.1|CW029106 104_256_10499487_116_30400 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10499487, DNA
sequence
Length = 715
Score = 120 bits (256), Expect(2) = 1e-048
Identities = 53/102 (51%), Positives = 69/102 (67%)
Frame = +3 / -2
Query: 75 SLNFRIQGHDMKLVELEGSHTLQDVYDSLDVHVGHCLSVLVDADQAPGDYYMVASTRFIH 254
+LN RIQ H+M LVE+EG+HT+Q+ Y SLDVHVG LSVL AD+ DY++V S RF +
Sbjct: 708 TLNIRIQEHNMTLVEVEGTHTVQNTYSSLDVHVGQSLSVLFTADRPAKDYHVVVSARFTN 529
Query: 255 DAKSASAVIRYAGSSGAPPAPNMTEPPAGWAWSINQARSFRW 380
++AV+RYAGSSG P P +S+NQARS R+
Sbjct: 528 ATLLSTAVVRYAGSSGLASGPLPAGPTDDVDFSLNQARSIRY 403
Score = 99.1 bits (210), Expect(2) = 1e-048
Identities = 39/66 (59%), Positives = 49/66 (74%)
Frame = +3 / -2
Query: 369 SFRWNLTASAARPNPQGSYHYGQINITRTIKVMVSRGHIDGKLRYGFNGISHRDPETPVK 548
S R NLTAS RPNPQGSYHYG IN+TRTI++ S + GK RY NG+S + +TP+K
Sbjct: 276 SSRTNLTASGPRPNPQGSYHYGSINVTRTIRLASSAVLVGGKRRYAVNGVSFAEADTPLK 97
Query: 549 LAEYFN 566
LA+Y+N
Sbjct: 96 LADYYN 79
Score = 80.8 bits (170), Expect(2) = 9e-025
Identities = 42/96 (43%), Positives = 50/96 (52%)
Frame = -2 / +2
Query: 364 AWLMDQAQPAGGSVMFGAGGAPLEPA*RMTAEADLASWMNRVEATM**SPGAWSASTSTE 185
AWL +++ + G G PLEPA*R TA + + R E T *S SA STE
Sbjct: 419 AWLREKSTSSVGPAGSGPEARPLEPA*RTTAVERRVALVKRAETTTW*SLAGRSAVKSTE 598
Query: 184 RQWPTCTSSESYTSCRVCEPSSSTSFMSWPWMRKLS 77
WPT TS E C VC PS+STS M W+R S
Sbjct: 599 SDWPTWTSREL*VFCTVCVPSTSTSVMLCSWIRMFS 706
Score = 58.3 bits (121), Expect(2) = 9e-025
Identities = 30/58 (51%), Positives = 32/58 (55%)
Frame = -2 / +2
Query: 556 SASFTGVSGSLWEMPLKP*RSLPSMWPRETMTLMVRVMLIWP*W*EPCGLGRAALAVR 383
SAS +GVS S E P R LP E MVRV L+ P*W EPCG G LAVR
Sbjct: 89 SASLSGVSASANETPFTAYRRLPPTSTAELANRMVRVTLMEP*WYEPCGFGLGPLAVR 262
>gb|BF586098.1|BF586098 FM1_26_F08.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 661
Score = 186 bits (401), Expect = 7e-046
Identities = 71/133 (53%), Positives = 94/133 (70%)
Frame = +3 / +3
Query: 624 GPLHVIPNVITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYNLL 803
G ++ +V+ A R ++EIVF+NPE + S H+DGYAF+ VGM G W+P R+ YNL
Sbjct: 45 GGAYLQTSVMAANMRDYVEIVFQNPENFVQSWHIDGYAFWVVGMDGGQWTPASRQGYNLR 224
Query: 804 DTVSRHTIQVYPRSWTAIMLTFDNAGMWSVRSNVWERYYLGEQFYISVISPARSLRDEYN 983
D ++R+T+QVYP+SWTAI + DN GMW+VRS W R YLG+QFY+ V SPA S RDE
Sbjct: 225 DAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENP 404
Query: 984 MPDNALRCGKVVG 1022
+P NAL CG+ G
Sbjct: 405 IPKNALLCGRASG 443
Score = 108 bits (230), Expect = 3e-022
Identities = 60/125 (48%), Positives = 70/125 (56%)
Frame = -2 / -1
Query: 1021 PTTLPQRRALSGMLYSSRSDRAGEMTLM*NCSPR*YRSQTLDRTLHMPALSNVSMIAVHD 842
P PQ A G+ +SSR + AGE T *NC PR +Q D T H+P LS+ IAVHD
Sbjct: 442 PEARPQSSAFLGIGFSSRHEFAGE*TRR*NCWPRYCLAQLSDLTFHIPTLSSGM*IAVHD 263
Query: 841 RGYTWIVCRLTVSSRLYVFLISGDHVPGPIPTPKKA*PSTWRESMLFSGFSKTISMKVRN 662
GYT V R S RLY ++G H P IPT + A*PS + FSGF KTIS R
Sbjct: 262 *GYTCNVYRAMASLRLYP*RLAGVHCPPSIPTTQNA*PSMCHDCTKFSGF*KTIST*SRM 83
Query: 661 SAVMT 647
A MT
Sbjct: 82 LAAMT 68
>gb|BF421494.1|BF421494 FM1_8_D12.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 674
Score = 182 bits (393), Expect = 8e-045
Identities = 70/133 (52%), Positives = 93/133 (69%)
Frame = +3 / +1
Query: 624 GPLHVIPNVITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYNLL 803
G ++ +V+ A R ++EIVF+N E + S H+DGYAF+ VGM G W+P R+ YNL
Sbjct: 16 GGAYLQTSVMAANMRDYVEIVFQNTENFVQSWHIDGYAFWVVGMDGGQWTPASRQGYNLR 195
Query: 804 DTVSRHTIQVYPRSWTAIMLTFDNAGMWSVRSNVWERYYLGEQFYISVISPARSLRDEYN 983
D ++R+T+QVYP+SWTAI + DN GMW+VRS W R YLG+QFY+ V SPA S RDE
Sbjct: 196 DAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENP 375
Query: 984 MPDNALRCGKVVG 1022
+P NAL CG+ G
Sbjct: 376 IPKNALLCGRASG 414
Score = 104 bits (221), Expect = 4e-021
Identities = 59/125 (47%), Positives = 69/125 (55%)
Frame = -2 / -1
Query: 1021 PTTLPQRRALSGMLYSSRSDRAGEMTLM*NCSPR*YRSQTLDRTLHMPALSNVSMIAVHD 842
P PQ A G+ +SSR + AGE T *NC PR +Q D T H+P LS+ IAVHD
Sbjct: 413 PEARPQSSAFLGIGFSSRHEFAGE*TRR*NCWPRYCLAQLSDLTFHIPTLSSGM*IAVHD 234
Query: 841 RGYTWIVCRLTVSSRLYVFLISGDHVPGPIPTPKKA*PSTWRESMLFSGFSKTISMKVRN 662
GYT V R S RLY ++G H P IPT + A*PS + FS F KTIS R
Sbjct: 233 *GYTCNVYRAMASLRLYP*RLAGVHCPPSIPTTQNA*PSMCHDCTKFSVF*KTIST*SRM 54
Query: 661 SAVMT 647
A MT
Sbjct: 53 LAAMT 39
>gb|CN129609.1|CN129609 RHOH1_36_H07.b3_A002 Acid- and alkaline-treated roots Sorghum bicolor
cDNA clone RHOH1_36_H07_A002 3', mRNA sequence
Length = 742
Score = 182 bits (393), Expect = 8e-045
Identities = 70/133 (52%), Positives = 93/133 (69%)
Frame = +3 / +1
Query: 624 GPLHVIPNVITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYNLL 803
G ++ +V+ A R ++EIVF+N E + S H+DGYAF+ VGM G W+P R+ YNL
Sbjct: 61 GGAYLQTSVMAANMRDYVEIVFQNTENFVQSWHIDGYAFWVVGMDGGQWTPASRQGYNLR 240
Query: 804 DTVSRHTIQVYPRSWTAIMLTFDNAGMWSVRSNVWERYYLGEQFYISVISPARSLRDEYN 983
D ++R+T+QVYP+SWTAI + DN GMW+VRS W R YLG+QFY+ V SPA S RDE
Sbjct: 241 DAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENP 420
Query: 984 MPDNALRCGKVVG 1022
+P NAL CG+ G
Sbjct: 421 IPKNALLCGRASG 459
Score = 104 bits (221), Expect = 4e-021
Identities = 59/125 (47%), Positives = 69/125 (55%)
Frame = -2 / -3
Query: 1021 PTTLPQRRALSGMLYSSRSDRAGEMTLM*NCSPR*YRSQTLDRTLHMPALSNVSMIAVHD 842
P PQ A G+ +SSR + AGE T *NC PR +Q D T H+P LS+ IAVHD
Sbjct: 458 PEARPQSSAFLGIGFSSRHEFAGE*TRR*NCWPRYCLAQLSDLTFHIPTLSSGM*IAVHD 279
Query: 841 RGYTWIVCRLTVSSRLYVFLISGDHVPGPIPTPKKA*PSTWRESMLFSGFSKTISMKVRN 662
GYT V R S RLY ++G H P IPT + A*PS + FS F KTIS R
Sbjct: 278 *GYTCNVYRAMASLRLYP*RLAGVHCPPSIPTTQNA*PSMCHDCTKFSVF*KTIST*SRM 99
Query: 661 SAVMT 647
A MT
Sbjct: 98 LAAMT 84
>gb|BF586907.1|BF586907 FM1_31_H11.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 646
Score = 182 bits (391), Expect = 2e-044
Identities = 69/126 (54%), Positives = 90/126 (71%)
Frame = +3 / +3
Query: 645 NVITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYNLLDTVSRHT 824
+V+ A R ++EIVF+N E + S H+DGYAF+ VGM G W+P R+ YNL D ++R+T
Sbjct: 9 SVMAANMRDYVEIVFQNTENFVQSWHIDGYAFWVVGMDGGQWTPASRQGYNLRDAIARYT 188
Query: 825 IQVYPRSWTAIMLTFDNAGMWSVRSNVWERYYLGEQFYISVISPARSLRDEYNMPDNALR 1004
+QVYP+SWTAI + DN GMW+VRS W R YLG+QFY+ V SPA S RDE +P NAL
Sbjct: 189 LQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENPIPKNALL 368
Query: 1005 CGKVVG 1022
CG+ G
Sbjct: 369 CGRASG 386
Score = 104 bits (221), Expect = 4e-021
Identities = 59/125 (47%), Positives = 69/125 (55%)
Frame = -2 / -1
Query: 1021 PTTLPQRRALSGMLYSSRSDRAGEMTLM*NCSPR*YRSQTLDRTLHMPALSNVSMIAVHD 842
P PQ A G+ +SSR + AGE T *NC PR +Q D T H+P LS+ IAVHD
Sbjct: 385 PEARPQSSAFLGIGFSSRHEFAGE*TRR*NCWPRYCLAQLSDLTFHIPTLSSGM*IAVHD 206
Query: 841 RGYTWIVCRLTVSSRLYVFLISGDHVPGPIPTPKKA*PSTWRESMLFSGFSKTISMKVRN 662
GYT V R S RLY ++G H P IPT + A*PS + FS F KTIS R
Sbjct: 205 *GYTCNVYRAMASLRLYP*RLAGVHCPPSIPTTQNA*PSMCHDCTKFSVF*KTIST*SRM 26
Query: 661 SAVMT 647
A MT
Sbjct: 25 LAAMT 11
>gb|CW473221.1|CW473221 fsbb001f228i05f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f228i05, DNA
sequence
Length = 691
Score = 145 bits (312), Expect(2) = 2e-044
Identities = 63/118 (53%), Positives = 82/118 (69%)
Frame = +3 / +3
Query: 27 AGKTYRLRVCNTGIKASLNFRIQGHDMKLVELEGSHTLQDVYDSLDVHVGHCLSVLVDAD 206
AGKTYRLR+ N G++ +LN RIQ H+M LVE+EG+HT+Q+ Y SLDVHVG LSVL AD
Sbjct: 81 AGKTYRLRISNVGLQNTLNIRIQEHNMTLVEVEGTHTVQNTYSSLDVHVGQSLSVLFTAD 260
Query: 207 QAPGDYYMVASTRFIHDAKSASAVIRYAGSSGAPPAPNMTEPPAGWAWSINQARSFRW 380
+ DY++V S RF + ++AV+RYAGSSG P P +S+NQARS R+
Sbjct: 261 RPAKDYHVVVSARFTNATLLSTAVVRYAGSSGLASGPLPAGPTDDVDFSLNQARSIRY 434
Score = 91.3 bits (193), Expect(2) = 9e-022
Identities = 48/115 (41%), Positives = 57/115 (49%)
Frame = -2 / -1
Query: 364 AWLMDQAQPAGGSVMFGAGGAPLEPA*RMTAEADLASWMNRVEATM**SPGAWSASTSTE 185
AWL +++ + G G PLEPA*R TA + + R E T *S SA STE
Sbjct: 418 AWLREKSTSSVGPAGSGPEARPLEPA*RTTAVERRVALVKRAETTTW*SLAGRSAVKSTE 239
Query: 184 RQWPTCTSSESYTSCRVCEPSSSTSFMSWPWMRKLSDALIPVLHTRRRYVLPASK 20
WPT TS E C VC PS+STS M W+R S P R YV PA +
Sbjct: 238 SDWPTWTSREL*VFCTVCVPSTSTSVMLCSWIRMFSVFCRPTFEMRSLYVFPAQR 74
Score = 59.3 bits (123), Expect(2) = 2e-044
Identities = 23/29 (79%), Positives = 24/29 (82%)
Frame = +3 / +1
Query: 369 SFRWNLTASAARPNPQGSYHYGQINITRT 455
S R NLTAS RPNPQGSYHYG IN+TRT
Sbjct: 562 SSRTNLTASGPRPNPQGSYHYGSINVTRT 648
Score = 37.7 bits (76), Expect(2) = 9e-022
Identities = 16/24 (66%), Positives = 17/24 (70%)
Frame = -2 / -3
Query: 454 VRVMLIWP*W*EPCGLGRAALAVR 383
VRV L+ P*W EPCG G LAVR
Sbjct: 647 VRVTLMEP*WYEPCGFGLGPLAVR 576
>gb|CW362554.1|CW362554 fsbb001f033k13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f033k13, DNA
sequence
Length = 691
Score = 115 bits (245), Expect(2) = 1e-043
Identities = 50/101 (49%), Positives = 65/101 (64%)
Frame = +3 / +2
Query: 30 GKTYRLRVCNTGIKASLNFRIQGHDMKLVELEGSHTLQDVYDSLDVHVGHCLSVLVDADQ 209
G TY RV N G++AS+N RIQGH ++LVE+EG+H +Q+VYDSLDVH G L+ LV DQ
Sbjct: 182 GGTYLFRVSNVGLRASVNVRIQGHALRLVEVEGTHPVQNVYDSLDVHAGQSLAFLVTLDQ 361
Query: 210 APGDYYMVASTRFIHDAKSASAVIRYAGSSGAPPAPNMTEP 332
P DY +VASTRF ++ +AV + AP P
Sbjct: 362 PPLDYAVVASTRFTNNESELTAVATLHYAGATARAPGPLPP 484
Score = 93.6 bits (198), Expect(2) = 1e-029
Identities = 42/91 (46%), Positives = 54/91 (59%)
Frame = -2 / -2
Query: 277 TAEADLASWMNRVEATM**SPGAWSASTSTERQWPTCTSSESYTSCRVCEPSSSTSFMSW 98
TA + + + RV+AT *S G WS+ T WP TS ES T C C PS+STS +W
Sbjct: 429 TAVSSDSLLVKRVDATTA*SSGGWSSVTRNASDWPAWTSRES*TFCTGCVPSTSTSRSAW 250
Query: 97 PWMRKLSDALIPVLHTRRRYVLPASKVSMGA 5
PW+R L++AL P L TR RYV P ++ A
Sbjct: 249 PWIRTLTEALSPTLDTRNRYVPPPFPTNVAA 157
Score = 84.0 bits (177), Expect(2) = 1e-043
Identities = 31/42 (73%), Positives = 36/42 (85%)
Frame = +3 / +2
Query: 333 PAGWAWSINQARSFRWNLTASAARPNPQGSYHYGQINITRTI 458
P + WS+NQARSFRWNLTASAARPNPQGS+HYG I +RT+
Sbjct: 494 PFDYGWSLNQARSFRWNLTASAARPNPQGSFHYGAIPTSRTL 619
Score = 58.8 bits (122), Expect(2) = 1e-029
Identities = 23/29 (79%), Positives = 23/29 (79%)
Frame = -2 / -2
Query: 433 P*W*EPCGLGRAALAVRFQRNDLAWLMDQ 347
P*W EPCGLGRAALAVRF R D AW DQ
Sbjct: 594 P*WNEPCGLGRAALAVRFHRKDRAWFRDQ 508
>gb|BF420999.1|BF420999 FM1_5_A06.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 444
Score = 178 bits (383), Expect = 2e-043
Identities = 72/145 (49%), Positives = 96/145 (66%)
Frame = +3 / +2
Query: 129 SHTLQDVYDSLDVHVGHCLSVLVDADQAPGDYYMVASTRFIHDAKSASAVIRYAGSSGAP 308
+HT+Q Y S+D+H+G S LV ADQ P DY ++ STRF + +A++ Y+ S+GA
Sbjct: 8 AHTMQSTYTSIDIHLGQSYSFLVTADQPPADYSIIVSTRFTTPVLTTTAILHYSNSNGAA 187
Query: 309 PAPNMTEPPAGWAWSINQARSFRWNLTASAARPNPQGSYHYGQINITRTIKVMVSRGHID 488
P P +S+NQARS RWNLTAS RPNPQGSYHYG +N TRTI + SR I+
Sbjct: 188 TVPPPAAPTVEIDFSLNQARSIRWNLTASGPRPNPQGSYHYGLVNTTRTIILANSRATIN 367
Query: 489 GKLRYGFNGISHRDPETPVKLAEYF 563
GKLRY N IS +TP+K+A+++
Sbjct: 368 GKLRYAVNSISFIPADTPLKVADFY 442
Score = 104 bits (222), Expect = 3e-021
Identities = 61/141 (43%), Positives = 72/141 (51%)
Frame = -2 / -1
Query: 556 SASFTGVSGSLWEMPLKP*RSLPSMWPRETMTLMVRVMLIWP*W*EPCGLGRAALAVRFQ 377
SA+ GVS + EM L SLP M RE ++MV V+L P*W*EP G G LAVRF
Sbjct: 435 SATLRGVSAGMKEMLLTAYLSLPLMVARELASMMVLVVLTRP*W*EP*GFGLGPLAVRFH 256
Query: 376 RNDLAWLMDQAQPAGGSVMFGAGGAPLEPA*RMTAEADLASWMNRVEATM**SPGAWSAS 197
R DLAWL +++ G+ G AP E * A + RVE M *S G SA
Sbjct: 255 RIDLAWLREKSISTVGAAGGGTVAAPFELL*WRMAVVVRTGVVKRVETIME*SAGG*SAV 76
Query: 196 TSTERQWPTCTSSESYTSCRV 134
T E WP S + Y C V
Sbjct: 75 TRNEYDWPRWMSMDVYVLCMV 13
>gb|BF586175.1|BF586175 FM1_26_F08.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 545
Score = 178 bits (383), Expect = 2e-043
Identities = 72/145 (49%), Positives = 96/145 (66%)
Frame = +3 / +2
Query: 129 SHTLQDVYDSLDVHVGHCLSVLVDADQAPGDYYMVASTRFIHDAKSASAVIRYAGSSGAP 308
+HT+Q Y S+D+H+G S LV ADQ P DY ++ STRF + +A++ Y+ S+GA
Sbjct: 8 AHTMQSTYTSIDIHLGQSYSFLVTADQPPADYSIIVSTRFTTPVLTTTAILHYSNSNGAA 187
Query: 309 PAPNMTEPPAGWAWSINQARSFRWNLTASAARPNPQGSYHYGQINITRTIKVMVSRGHID 488
P P +S+NQARS RWNLTAS RPNPQGSYHYG +N TRTI + SR I+
Sbjct: 188 TVPPPAAPTVEIDFSLNQARSIRWNLTASGPRPNPQGSYHYGLVNTTRTIILANSRATIN 367
Query: 489 GKLRYGFNGISHRDPETPVKLAEYF 563
GKLRY N IS +TP+K+A+++
Sbjct: 368 GKLRYAVNSISFIPADTPLKVADFY 442
Score = 104 bits (222), Expect = 3e-021
Identities = 61/141 (43%), Positives = 72/141 (51%)
Frame = -2 / -3
Query: 556 SASFTGVSGSLWEMPLKP*RSLPSMWPRETMTLMVRVMLIWP*W*EPCGLGRAALAVRFQ 377
SA+ GVS + EM L SLP M RE ++MV V+L P*W*EP G G LAVRF
Sbjct: 435 SATLRGVSAGMKEMLLTAYLSLPLMVARELASMMVLVVLTRP*W*EP*GFGLGPLAVRFH 256
Query: 376 RNDLAWLMDQAQPAGGSVMFGAGGAPLEPA*RMTAEADLASWMNRVEATM**SPGAWSAS 197
R DLAWL +++ G+ G AP E * A + RVE M *S G SA
Sbjct: 255 RIDLAWLREKSISTVGAAGGGTVAAPFELL*WRMAVVVRTGVVKRVETIME*SAGG*SAV 76
Query: 196 TSTERQWPTCTSSESYTSCRV 134
T E WP S + Y C V
Sbjct: 75 TRNEYDWPRWMSMDVYVLCMV 13
>gb|BG465293.1|BG465293 EM1_74_D12.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence
Length = 608
Score = 174 bits (374), Expect = 4e-042
Identities = 66/116 (56%), Positives = 84/116 (72%)
Frame = +3 / +1
Query: 675 IEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYNLLDTVSRHTIQVYPRSWTA 854
+EIVF+N E + S H+DGYAF+ VGM G W+P R+ YNL D ++R+T+QVYP+SWTA
Sbjct: 1 VEIVFQNTENFVQSWHIDGYAFWVVGMDGGQWTPASRQGYNLRDAIARYTLQVYPQSWTA 180
Query: 855 IMLTFDNAGMWSVRSNVWERYYLGEQFYISVISPARSLRDEYNMPDNALRCGKVVG 1022
I + DN GMW+VRS W R YLG+QFY+ V SPA S RDE +P NAL CG+ G
Sbjct: 181 IYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENPIPKNALLCGRASG 348
>gb|CX611383.1|CX611383 ANR1_24_G11.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_24_G11_A002 3', mRNA sequence
Length = 725
Score = 173 bits (372), Expect = 7e-042
Identities = 61/127 (48%), Positives = 90/127 (70%)
Frame = +3 / +3
Query: 648 VITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYNLLDTVSRHTI 827
V+ F+E+VF+N E + + H+DGY F+ VG G G W+ R+TYNL+D +RHT+
Sbjct: 36 VLRLGLHEFVEVVFQNTESELQAWHLDGYDFWVVGYGDGQWNETQRQTYNLVDAQARHTV 215
Query: 828 QVYPRSWTAIMLTFDNAGMWSVRSNVWERYYLGEQFYISVISPARSLRDEYNMPDNALRC 1007
QVYP W+AI+++ DN GMW++RS +W+R YLG+Q Y+ V +P +S +EY +P +A+ C
Sbjct: 216 QVYPNGWSAILVSLDNQGMWNLRSAIWDRQYLGQQLYLRVWTPQQSFSNEYAIPTDAILC 395
Query: 1008 GKVVGLP 1028
GK VGLP
Sbjct: 396 GKAVGLP 416
>gb|CW298477.1|CW298477 104_781_11462600_148_35655_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11462600, DNA
sequence
Length = 697
Score = 73.9 bits (155), Expect(4) = 1e-040
Identities = 33/60 (55%), Positives = 38/60 (63%)
Frame = +3 / -1
Query: 63 GIKASLNFRIQGHDMKLVELEGSHTLQDVYDSLDVHVGHCLSVLVDADQAPGDYYMVAST 242
G SLNFRIQGH+M LVE EGS+T Q Y +LDVHVG S LV DQ Y V ++
Sbjct: 697 GTSTSLNFRIQGHNMVLVETEGSYTSQQNYTNLDVHVGQSYSFLVTTDQNASSDYYVVAS 518
Score = 68.0 bits (142), Expect(4) = 1e-040
Identities = 26/48 (54%), Positives = 34/48 (70%)
Frame = +3 / -1
Query: 309 PAPNMTEPPAGWAWSINQARSFRWNLTASAARPNPQGSYHYGQINITR 452
P P+ + +S+NQARS RWNL+A AARPNPQGS+ Y IN+T+
Sbjct: 430 PLPDPPQDQNDRTFSMNQARSVRWNLSAGAARPNPQGSFRYSSINVTQ 287
Score = 46.9 bits (96), Expect(4) = 1e-040
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = +3 / -1
Query: 612 PAVNGPLHVIPNVITAEFRTFIEIVFENPEKSIDSLHVDGYAFF 743
P G + +VI +R F+E++F+N + + S H+DGYAFF
Sbjct: 133 PLNKGAPRIARSVINGTYRGFMELIFQNNDTRMQSYHMDGYAFF 2
Score = 36.3 bits (73), Expect(4) = 1e-040
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +3 / -1
Query: 483 IDGKLRYGFNGISHRDPETPVKLAEYF 563
IDG+ R NG+S+ PETP++LA+ +
Sbjct: 253 IDGRRRATLNGLSYAPPETPLRLADAY 173
>gb|CF480672.1|CF480672 POL1_67_E06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_67_E06_A002 3', mRNA sequence
Length = 691
Score = 164 bits (353), Expect = 3e-039
Identities = 61/73 (83%), Positives = 68/73 (93%)
Frame = +3 / +2
Query: 825 IQVYPRSWTAIMLTFDNAGMWSVRSNVWERYYLGEQFYISVISPARSLRDEYNMPDNALR 1004
+QVYPRSWTA+M+TFDNAGMWS+RSN+WER YLGEQ YISV SP RSLRDEYNMP+ +LR
Sbjct: 2 VQVYPRSWTAVMMTFDNAGMWSIRSNIWERNYLGEQLYISVTSPERSLRDEYNMPETSLR 181
Query: 1005 CGKVVGLPLPPSY 1043
CGKVVGLPLPPSY
Sbjct: 182 CGKVVGLPLPPSY 220
Score = 133 bits (284), Expect = 9e-030
Identities = 56/72 (77%), Positives = 62/72 (86%)
Frame = -2 / -2
Query: 1042 *DGGSGSPTTLPQRRALSGMLYSSRSDRAGEMTLM*NCSPR*YRSQTLDRTLHMPALSNV 863
*DGGSG PTTLPQRR +SGMLYSS SDR+GE+TLM +CSPR*+ SQ LDR LHMPALSNV
Sbjct: 219 *DGGSGRPTTLPQRRLVSGMLYSSLSDRSGEVTLMYSCSPR*FLSQMLDRILHMPALSNV 40
Query: 862 SMIAVHDRGYTW 827
+ AVHD GYTW
Sbjct: 39 IITAVHDLGYTW 4
Score = 123 bits (264), Expect = 5e-027
Identities = 54/75 (72%), Positives = 58/75 (77%)
Frame = -1 / -1
Query: 1049 GGVGWRQRQPHDLAAAEGVVGHVVLVAQRPRRRDDADVELLPEVVPLPDVGPDAPHARVV 870
G VG RQ Q DLAAAE + HVVLV +RP RR DADV+LL EV+PLPDVGPD PHARVV
Sbjct: 226 GEVGRRQWQADDLAAAEAGLWHVVLVPERPLRRGDADVQLLAEVIPLPDVGPDTPHARVV 47
Query: 869 ECQHDRRP*PRVHLD 825
E H RRP PRVHLD
Sbjct: 46 ERHHHRRPRPRVHLD 2
>gb|CX606430.1|CX606430 ANR1_3_A12.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_3_A12_A002 3', mRNA sequence
Length = 623
Score = 164 bits (352), Expect = 4e-039
Identities = 62/111 (55%), Positives = 79/111 (71%)
Frame = +3 / +3
Query: 690 ENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYNLLDTVSRHTIQVYPRSWTAIMLTF 869
+N E + S H+DGYAF+ VGM G W+P R+ YNL D ++R+T+QVYP+SWTAI +
Sbjct: 3 QNTENFVQSWHIDGYAFWVVGMDGGQWTPASRQGYNLRDAIARYTLQVYPQSWTAIYMPL 182
Query: 870 DNAGMWSVRSNVWERYYLGEQFYISVISPARSLRDEYNMPDNALRCGKVVG 1022
DN GMW+VRS W R YLG+QFY+ V SPA S RDE +P NAL CG+ G
Sbjct: 183 DNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENPIPKNALLCGRASG 335
>gb|CW298476.1|CW298476 104_781_11462600_116_35659_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11462600, DNA
sequence
Length = 683
Score = 93.6 bits (198), Expect(3) = 1e-037
Identities = 41/72 (56%), Positives = 48/72 (66%)
Frame = +3 / +1
Query: 27 AGKTYRLRVCNTGIKASLNFRIQGHDMKLVELEGSHTLQDVYDSLDVHVGHCLSVLVDAD 206
AG+TYR+RV N G SLNFRIQGH+M LVE EGS+T Q Y +LDVHVG S LV D
Sbjct: 124 AGRTYRIRVHNVGTSTSLNFRIQGHNMVLVETEGSYTSQQNYTNLDVHVGQSYSFLVTTD 303
Query: 207 QAPGDYYMVAST 242
Q Y V ++
Sbjct: 304 QNASSDYYVVAS 339
Score = 70.7 bits (148), Expect(3) = 2e-021
Identities = 34/67 (50%), Positives = 37/67 (55%)
Frame = -2 / -1
Query: 208 WSASTSTERQWPTCTSSESYTSCRVCEPSSSTSFMSWPWMRKLSDALIPVLHTRRRYVLP 29
WS T E WPT TS C V EPS STS M PW+RKL +P L TR RYVLP
Sbjct: 305 WSVVTRKE*DWPTWTSRFV*FCCEV*EPSVSTSTMLCPWIRKLRLVDVPTLCTRMRYVLP 126
Query: 28 ASKVSMG 8
A +G
Sbjct: 125 APSHQLG 105
Score = 68.0 bits (142), Expect(3) = 1e-037
Identities = 26/48 (54%), Positives = 34/48 (70%)
Frame = +3 / +1
Query: 309 PAPNMTEPPAGWAWSINQARSFRWNLTASAARPNPQGSYHYGQINITR 452
P P+ + +S+NQARS RWNL+A AARPNPQGS+ Y IN+T+
Sbjct: 427 PLPDPPQDQNDRTFSMNQARSVRWNLSAGAARPNPQGSFRYSSINVTQ 570
Score = 49.6 bits (102), Expect(3) = 2e-021
Identities = 18/27 (66%), Positives = 22/27 (81%)
Frame = -2 / -1
Query: 421 EPCGLGRAALAVRFQRNDLAWLMDQAQ 341
EPCGLGRAA A+RF R DLAW M++ +
Sbjct: 539 EPCGLGRAAPALRFHRTDLAWFMEKVR 459
Score = 35.9 bits (72), Expect(3) = 1e-037
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +3 / +1
Query: 483 IDGKLRYGFNGISHRDPETPVKLAE 557
IDG+ R NG+S+ PETP++LA+
Sbjct: 604 IDGRRRATLNGLSYAPPETPLRLAD 678
Score = 26.7 bits (52), Expect(3) = 2e-021
Identities = 14/25 (56%), Positives = 14/25 (56%)
Frame = -2 / -1
Query: 556 SASFTGVSGSLWEMPLKP*RSLPSM 482
SAS GVSG E P R LPSM
Sbjct: 677 SASRRGVSGGA*ESPFSVARRLPSM 603
>gb|CW347590.1|CW347590 fsbb001f007i24k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f007i24, DNA
sequence
Length = 558
Score = 151 bits (325), Expect(2) = 2e-036
Identities = 57/69 (82%), Positives = 63/69 (91%)
Frame = +3 / -1
Query: 837 PRSWTAIMLTFDNAGMWSVRSNVWERYYLGEQFYISVISPARSLRDEYNMPDNALRCGKV 1016
PRSWTA+M+TFDNAGMWS+RSN+WER LGEQ YISV SP RSLRDEYNMP+ +LRCGKV
Sbjct: 501 PRSWTAVMMTFDNAGMWSIRSNIWERNSLGEQLYISVTSPERSLRDEYNMPETSLRCGKV 322
Query: 1017 VGLPLPPSY 1043
VGLPLPPSY
Sbjct: 321 VGLPLPPSY 295
Score = 119 bits (255), Expect(2) = 4e-027
Identities = 51/68 (75%), Positives = 57/68 (83%)
Frame = -2 / +2
Query: 1039 DGGSGSPTTLPQRRALSGMLYSSRSDRAGEMTLM*NCSPR*YRSQTLDRTLHMPALSNVS 860
DGGSG PTTLPQRR +SGMLYSS SDR+GE+TLM +CSPR + SQ LDR LHMPALSNV
Sbjct: 299 DGGSGRPTTLPQRRLVSGMLYSSLSDRSGEVTLMYSCSPREFLSQMLDRILHMPALSNVI 478
Query: 859 MIAVHDRG 836
+ AVHD G
Sbjct: 479 ITAVHDLG 502
Score = 107 bits (228), Expect(2) = 7e-023
Identities = 48/71 (67%), Positives = 52/71 (73%)
Frame = -1 / +1
Query: 1049 GGVGWRQRQPHDLAAAEGVVGHVVLVAQRPRRRDDADVELLPEVVPLPDVGPDAPHARVV 870
G V RQ Q DLAAAE + HVVLV +RP RR DADV+LL E +PLPDVGPD PHARVV
Sbjct: 289 GEVXRRQWQADDLAAAEAGLWHVVLVPERPLRRGDADVQLLAEGIPLPDVGPDTPHARVV 468
Query: 869 ECQHDRRP*PR 837
E H RRP PR
Sbjct: 469 ERHHHRRPRPR 501
Score = 24.0 bits (46), Expect(2) = 4e-027
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -2 / +3
Query: 838 GYTWIVCR 815
GYTW VCR
Sbjct: 501 GYTWTVCR 524
Score = 23.5 bits (45), Expect(2) = 2e-036
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = +3 / -3
Query: 813 SRHTIQVYP 839
+RHT+QVYP
Sbjct: 526 ARHTVQVYP 500
Score = 22.1 bits (42), Expect(2) = 7e-023
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -3 / +1
Query: 837 GTPGSCAG 814
GTPG CAG
Sbjct: 502 GTPGPCAG 525
>gb|CW066036.1|CW066036 104_313_10523474_114_30148 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10523474, DNA
sequence
Length = 607
Score = 96.4 bits (204), Expect(2) = 5e-036
Identities = 38/63 (60%), Positives = 47/63 (74%)
Frame = +3 / +1
Query: 375 RWNLTASAARPNPQGSYHYGQINITRTIKVMVSRGHIDGKLRYGFNGISHRDPETPVKLA 554
RWNLTAS RPNPQGSYHYG +N TRTI + SR I+GKLRY N IS +TP+K+A
Sbjct: 418 RWNLTASGPRPNPQGSYHYGLVNTTRTIILANSRATINGKLRYAVNSISFIPADTPLKVA 597
Query: 555 EYF 563
+++
Sbjct: 598 DFY 606
Score = 80.3 bits (169), Expect(2) = 5e-036
Identities = 33/80 (41%), Positives = 47/80 (58%)
Frame = +3 / +2
Query: 138 LQDVYDSLDVHVGHCLSVLVDADQAPGDYYMVASTRFIHDAKSASAVIRYAGSSGAPPAP 317
+Q Y S+D+H+G S LV ADQ P DY ++ STRF + +A++ Y+ S+GA P
Sbjct: 2 MQSTYTSIDIHLGQSYSFLVTADQPPADYSIIISTRFTTPVLTTTAILHYSNSNGAATVP 181
Query: 318 NMTEPPAGWAWSINQARSFR 377
P +S+NQARS R
Sbjct: 182 PPAAPTVEIDFSLNQARSIR 241
>gb|CF489723.1|CF489723 POL1_59_F09.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_59_F09_A002 3', mRNA sequence
Length = 658
Score = 148 bits (318), Expect = 2e-034
Identities = 55/66 (83%), Positives = 61/66 (92%)
Frame = +3 / +3
Query: 846 WTAIMLTFDNAGMWSVRSNVWERYYLGEQFYISVISPARSLRDEYNMPDNALRCGKVVGL 1025
WTA+M+TFDNAGMWS+RSN+WER YLGEQ YISV SP RSLRDEYNMP+ +LRCGKVVGL
Sbjct: 3 WTAVMMTFDNAGMWSIRSNIWERNYLGEQLYISVTSPERSLRDEYNMPETSLRCGKVVGL 182
Query: 1026 PLPPSY 1043
PLPPSY
Sbjct: 183 PLPPSY 200
Score = 117 bits (251), Expect = 3e-025
Identities = 51/66 (77%), Positives = 57/66 (86%)
Frame = -2 / -1
Query: 1042 *DGGSGSPTTLPQRRALSGMLYSSRSDRAGEMTLM*NCSPR*YRSQTLDRTLHMPALSNV 863
*DGGSG PTTLPQRR +SGMLYSS SDR+GE+TLM +CSPR*+ SQ LDR LHMPALSNV
Sbjct: 199 *DGGSGRPTTLPQRRLVSGMLYSSLSDRSGEVTLMYSCSPR*FLSQMLDRILHMPALSNV 20
Query: 862 SMIAVH 845
+ AVH
Sbjct: 19 IITAVH 2
Score = 108 bits (230), Expect = 3e-022
Identities = 47/68 (69%), Positives = 51/68 (75%)
Frame = -1 / -3
Query: 1049 GGVGWRQRQPHDLAAAEGVVGHVVLVAQRPRRRDDADVELLPEVVPLPDVGPDAPHARVV 870
G VG RQ Q DLAAAE + HVVLV +RP RR DADV+L EV+PLPDVGPD PHARVV
Sbjct: 206 GEVGRRQWQADDLAAAEAGLWHVVLVPERPLRRGDADVQLFAEVIPLPDVGPDTPHARVV 27
Query: 869 ECQHDRRP 846
E H RRP
Sbjct: 26 ERHHHRRP 3
>gb|CF489854.1|CF489854 POL1_61_B07.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_61_B07_A002 3', mRNA sequence
Length = 523
Score = 147 bits (316), Expect = 4e-034
Identities = 55/89 (61%), Positives = 68/89 (76%)
Frame = +3 / +1
Query: 747 VGMGPGTWSPEMRKTYNLLDTVSRHTIQVYPRSWTAIMLTFDNAGMWSVRSNVWERYYLG 926
VGM GTWS + R YNL+D VSR T+QVYPR WTA+++ DN GMW++RS VW R YLG
Sbjct: 1 VGMDVGTWSNKSRDGYNLVDAVSRCTVQVYPRGWTAVLIALDNVGMWNMRSEVWARRYLG 180
Query: 927 EQFYISVISPARSLRDEYNMPDNALRCGK 1013
+QFY+ V +P+RS RDE MPDNAL CG+
Sbjct: 181 QQFYLRVYTPSRSFRDELPMPDNALLCGR 267
>gb|CW266285.1|CW266285 104_736_11232344_116_35282_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11232344, DNA
sequence
Length = 649
Score = 143 bits (306), Expect = 8e-033
Identities = 53/87 (60%), Positives = 66/87 (75%)
Frame = +3 / +2
Query: 753 MGPGTWSPEMRKTYNLLDTVSRHTIQVYPRSWTAIMLTFDNAGMWSVRSNVWERYYLGEQ 932
M GTWS + R YNL+D VSR T+QVYPR WTA+++ DN GMW++RS VW R YLG+Q
Sbjct: 44 MDVGTWSNKSRDGYNLVDAVSRCTVQVYPRGWTAVLIALDNVGMWNMRSEVWARRYLGQQ 223
Query: 933 FYISVISPARSLRDEYNMPDNALRCGK 1013
FY+ V +P+RS RDE MPDNAL CG+
Sbjct: 224 FYLRVYTPSRSFRDELPMPDNALLCGR 304
>gb|CW371735.1|CW371735 fsbb001f047f12k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f047f12, DNA
sequence
Length = 645
Score = 143 bits (306), Expect = 8e-033
Identities = 53/87 (60%), Positives = 66/87 (75%)
Frame = +3 / -2
Query: 753 MGPGTWSPEMRKTYNLLDTVSRHTIQVYPRSWTAIMLTFDNAGMWSVRSNVWERYYLGEQ 932
M GTWS + R YNL+D VSR T+QVYPR WTA+++ DN GMW++RS VW R YLG+Q
Sbjct: 518 MDVGTWSNKSRDGYNLVDAVSRCTVQVYPRGWTAVLIALDNVGMWNMRSEVWARRYLGQQ 339
Query: 933 FYISVISPARSLRDEYNMPDNALRCGK 1013
FY+ V +P+RS RDE MPDNAL CG+
Sbjct: 338 FYLRVYTPSRSFRDELPMPDNALLCGR 258
>gb|CW473222.1|CW473222 fsbb001f228i05k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f228i05, DNA
sequence
Length = 620
Score = 143 bits (306), Expect = 8e-033
Identities = 53/87 (60%), Positives = 66/87 (75%)
Frame = +3 / -1
Query: 753 MGPGTWSPEMRKTYNLLDTVSRHTIQVYPRSWTAIMLTFDNAGMWSVRSNVWERYYLGEQ 932
M GTWS + R YNL+D VSR T+QVYPR WTA+++ DN GMW++RS VW R YLG+Q
Sbjct: 479 MDVGTWSNKSRDGYNLVDAVSRCTVQVYPRGWTAVLIALDNVGMWNMRSEVWARRYLGQQ 300
Query: 933 FYISVISPARSLRDEYNMPDNALRCGK 1013
FY+ V +P+RS RDE MPDNAL CG+
Sbjct: 299 FYLRVYTPSRSFRDELPMPDNALLCGR 219
>gb|CF488326.1|CF488326 POL1_49_E06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_49_E06_A002 3', mRNA sequence
Length = 521
Score = 143 bits (306), Expect = 8e-033
Identities = 53/88 (60%), Positives = 66/88 (75%)
Frame = +3 / +2
Query: 750 GMGPGTWSPEMRKTYNLLDTVSRHTIQVYPRSWTAIMLTFDNAGMWSVRSNVWERYYLGE 929
GM GTWS + R Y L+D VSR T+QVYPR WTA+++ DN GMW++RS VW R YLG+
Sbjct: 2 GMDVGTWSNKSRDGYTLVDAVSRCTVQVYPRGWTAVLIALDNVGMWNMRSEVWARRYLGQ 181
Query: 930 QFYISVISPARSLRDEYNMPDNALRCGK 1013
QFY+ V +P+RS RDE MPDNAL CG+
Sbjct: 182 QFYLRVYTPSRSFRDELPMPDNALLCGR 265
>gb|CW297870.1|CW297870 104_780_11462273_148_35650_075 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11462273, DNA
sequence
Length = 551
Score = 93.6 bits (198), Expect(2) = 2e-032
Identities = 41/72 (56%), Positives = 48/72 (66%)
Frame = +3 / +2
Query: 27 AGKTYRLRVCNTGIKASLNFRIQGHDMKLVELEGSHTLQDVYDSLDVHVGHCLSVLVDAD 206
AG+TYR+RV N G SLNFRIQGH+M LVE EGS+T Q Y +LDVHVG S LV D
Sbjct: 68 AGRTYRIRVHNVGTSTSLNFRIQGHNMVLVETEGSYTSQQNYTNLDVHVGQSYSFLVTTD 247
Query: 207 QAPGDYYMVAST 242
Q Y V ++
Sbjct: 248 QNASSDYYVVAS 283
Score = 68.0 bits (142), Expect(2) = 2e-032
Identities = 26/48 (54%), Positives = 34/48 (70%)
Frame = +3 / +2
Query: 309 PAPNMTEPPAGWAWSINQARSFRWNLTASAARPNPQGSYHYGQINITR 452
P P+ + +S+NQARS RWNL+A AARPNPQGS+ Y IN+T+
Sbjct: 371 PLPDPPQDQNDRTFSMNQARSVRWNLSAGAARPNPQGSFRYSSINVTQ 514
>gb|CF482627.1|CF482627 POL1_8_D05.b1_A002 Pollen Sorghum bicolor cDNA clone POL1_8_D05_A002
3', mRNA sequence
Length = 524
Score = 139 bits (298), Expect = 1e-031
Identities = 52/88 (59%), Positives = 65/88 (73%)
Frame = +3 / +2
Query: 750 GMGPGTWSPEMRKTYNLLDTVSRHTIQVYPRSWTAIMLTFDNAGMWSVRSNVWERYYLGE 929
GM TWS + R Y L+D VSR T+QVYPR WTA+++ DN GMW++RS VW R YLG+
Sbjct: 2 GMDVRTWSNKSRDGYTLVDAVSRCTVQVYPRGWTAVLIALDNVGMWNMRSEVWARRYLGQ 181
Query: 930 QFYISVISPARSLRDEYNMPDNALRCGK 1013
QFY+ V +P+RS RDE MPDNAL CG+
Sbjct: 182 QFYLRVYTPSRSFRDELPMPDNALLCGR 265
>gb|BG649800.1|BG649800 RHIZ2_83_G03.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 586
Score = 70.3 bits (147), Expect(3) = 1e-030
Identities = 28/62 (45%), Positives = 39/62 (62%)
Frame = +3 / +3
Query: 57 NTGIKASLNFRIQGHDMKLVELEGSHTLQDVYDSLDVHVGHCLSVLVDADQAPGDYYMVA 236
N G+ SLN RIQ H+M LVE EGS+T++ + +LD+HVG S LV DQ Y +
Sbjct: 12 NVGVSTSLNLRIQNHNMALVETEGSYTMKQNFTNLDIHVGQSYSFLVTMDQNASSDYYIV 191
Query: 237 ST 242
++
Sbjct: 192 AS 197
Score = 65.7 bits (137), Expect(3) = 1e-030
Identities = 25/52 (48%), Positives = 35/52 (67%)
Frame = +3 / +3
Query: 309 PAPNMTEPPAGWAWSINQARSFRWNLTASAARPNPQGSYHYGQINITRTIKV 464
P P+ +S+NQARS R N++ AARPNPQGS+HYG IN+++ K+
Sbjct: 285 PLPDPPNDEYDKTFSMNQARSIRMNVSTGAARPNPQGSFHYGSINVSQVYKL 440
Score = 37.7 bits (76), Expect(3) = 1e-030
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +3 / +3
Query: 483 IDGKLRYGFNGISHRDPETPVKLAEYFNATD 575
IDGK R +GIS+ P+TP++LA+ ++ D
Sbjct: 462 IDGKKRTTLSGISYSPPDTPLRLADLYDKKD 554
>gb|CF486499.1|CF486499 POL1_38_B11.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_38_B11_A002 3', mRNA sequence
Length = 523
Score = 133 bits (284), Expect = 9e-030
Identities = 50/87 (57%), Positives = 63/87 (72%)
Frame = +3 / +3
Query: 753 MGPGTWSPEMRKTYNLLDTVSRHTIQVYPRSWTAIMLTFDNAGMWSVRSNVWERYYLGEQ 932
M GTWS + R Y L+D VSR T+QVYPR WTA+++ DN GMW++RS VW R YLG+Q
Sbjct: 3 MDVGTWSNKSRDGYTLVDAVSRCTVQVYPRGWTAVLIALDNVGMWNMRSEVWARRYLGQQ 182
Query: 933 FYISVISPARSLRDEYNMPDNALRCGK 1013
FY+ V +P+RS RDE MPDNA G+
Sbjct: 183 FYLRVYTPSRSFRDELPMPDNAFFWGR 263
>gb|CW029105.1|CW029105 104_256_10499487_114_30399 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10499487, DNA
sequence
Length = 724
Score = 132 bits (283), Expect = 1e-029
Identities = 55/97 (56%), Positives = 71/97 (73%)
Frame = +3 / +3
Query: 27 AGKTYRLRVCNTGIKASLNFRIQGHDMKLVELEGSHTLQDVYDSLDVHVGHCLSVLVDAD 206
AGKTYRLR+ N G++ +LN RIQ H+M LVE+EG+HT+Q+ Y SLDVHVG LSVL AD
Sbjct: 414 AGKTYRLRISNVGLQNTLNIRIQEHNMTLVEVEGTHTVQNTYSSLDVHVGQSLSVLFTAD 593
Query: 207 QAPGDYYMVASTRFIHDAKSASAVIRYAGSSGAPPAP 317
+ DY++V S RF + ++AV+RYAGSSG P
Sbjct: 594 RPAKDYHVVVSARFTNATLLSTAVVRYAGSSGLASGP 704
>gb|CW175990.1|CW175990 104_588_11158248_148_36576_084 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11158248, DNA
sequence
Length = 707
Score = 132 bits (283), Expect = 1e-029
Identities = 55/97 (56%), Positives = 71/97 (73%)
Frame = +3 / -2
Query: 27 AGKTYRLRVCNTGIKASLNFRIQGHDMKLVELEGSHTLQDVYDSLDVHVGHCLSVLVDAD 206
AGKTYRLR+ N G++ +LN RIQ H+M LVE+EG+HT+Q+ Y SLDVHVG LSVL AD
Sbjct: 331 AGKTYRLRISNVGLQNTLNIRIQEHNMTLVEVEGTHTVQNTYSSLDVHVGQSLSVLFTAD 152
Query: 207 QAPGDYYMVASTRFIHDAKSASAVIRYAGSSGAPPAP 317
+ DY++V S RF + ++AV+RYAGSSG P
Sbjct: 151 RPAKDYHVVVSARFTNATLLSTAVVRYAGSSGLASGP 41
>gb|CW493595.1|CW493595 fsbb001f284g24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f284g24, DNA
sequence
Length = 545
Score = 132 bits (283), Expect = 1e-029
Identities = 55/97 (56%), Positives = 71/97 (73%)
Frame = +3 / -2
Query: 27 AGKTYRLRVCNTGIKASLNFRIQGHDMKLVELEGSHTLQDVYDSLDVHVGHCLSVLVDAD 206
AGKTYRLR+ N G++ +LN RIQ H+M LVE+EG+HT+Q+ Y SLDVHVG LSVL AD
Sbjct: 394 AGKTYRLRISNVGLQNTLNIRIQEHNMTLVEVEGTHTVQNTYSSLDVHVGQSLSVLFTAD 215
Query: 207 QAPGDYYMVASTRFIHDAKSASAVIRYAGSSGAPPAP 317
+ DY++V S RF + ++AV+RYAGSSG P
Sbjct: 214 RPAKDYHVVVSARFTNATLLSTAVVRYAGSSGLASGP 104
>gb|CW493596.1|CW493596 fsbb001f284g24k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f284g24, DNA
sequence
Length = 762
Score = 132 bits (282), Expect = 2e-029
Identities = 57/112 (50%), Positives = 75/112 (66%)
Frame = +3 / +2
Query: 27 AGKTYRLRVCNTGIKASLNFRIQGHDMKLVELEGSHTLQDVYDSLDVHVGHCLSVLVDAD 206
AGKTYRLR+ N G++ +LN RIQ H+M LVE+EG+HT+Q+ Y SLDVHVG LSVL AD
Sbjct: 413 AGKTYRLRISNVGLQNTLNIRIQEHNMTLVEVEGTHTVQNTYSSLDVHVGQSLSVLFTAD 592
Query: 207 QAPGDYYMVASTRFIHDAKSASAVIRYAGSSGAPPAPNMTEPPAGWAWSINQ 362
+ DY++V S RF + ++ V+RYAGSSG P P +S+ Q
Sbjct: 593 RPAKDYHVVVSARFTNATLLSTGVVRYAGSSGLASGPLPAGPTDDVDFSLKQ 748
>gb|BG412419.1|BG412419 OV2_33_H06.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 678
Score = 131 bits (280), Expect = 3e-029
Identities = 49/113 (43%), Positives = 78/113 (69%)
Frame = +3 / +1
Query: 618 VNGPLHVIPNVITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYN 797
++GP + +VI + ++ F+EIVF+N + ++ + H+DGYAF+ VGM G W+ +R TYN
Sbjct: 1 IDGPPVIRTSVINSTYKNFLEIVFQNNDTTVQTYHIDGYAFWVVGMDYGEWTENIRGTYN 180
Query: 798 LLDTVSRHTIQVYPRSWTAIMLTFDNAGMWSVRSNVWERYYLGEQFYISVISP 956
D VSR T QV+P +WTA+ML+ D+ G W+VR+ + +YLG++ I V+ P
Sbjct: 181 KWDGVSRCTTQVFPGAWTAVMLSLDSPGFWNVRTENLDTWYLGQETSIRVVDP 339
>gb|CF485646.1|CF485646 POL1_32_F06.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_32_F06_A002 5', mRNA sequence
Length = 630
Score = 128 bits (275), Expect = 2e-028
Identities = 54/101 (53%), Positives = 69/101 (68%)
Frame = +3 / +3
Query: 261 KSASAVIRYAGSSGAPPAPNMTEPPAGWAWSINQARSFRWNLTASAARPNPQGSYHYGQI 440
+ A+AV+RYAGSSG P P +S+NQARS NLTAS RPNPQGSYHYG I
Sbjct: 327 RRATAVVRYAGSSGLASGPLPAGPTDDVDFSLNQARSIXTNLTASGPRPNPQGSYHYGSI 506
Query: 441 NITRTIKVMVSRGHIDGKLRYGFNGISHRDPETPVKLAEYF 563
N+TRTI++ S + GK RY NG+S + +TP+KLA+Y+
Sbjct: 507 NVTRTIRLASSAVLVGGKRRYAVNGVSFAEADTPLKLADYY 629
>gb|BG240385.1|BG240385 OV1_29_D04.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 441
Score = 127 bits (273), Expect = 3e-028
Identities = 53/107 (49%), Positives = 70/107 (65%)
Frame = +3 / +2
Query: 243 RFIHDAKSASAVIRYAGSSGAPPAPNMTEPPAGWAWSINQARSFRWNLTASAARPNPQGS 422
RF + +A++ Y+ S+GA P P +S+NQARS RWNLTAS RPNPQGS
Sbjct: 11 RFTTPVLTTTAILHYSNSNGAATVPPPAAPTVEIDFSLNQARSIRWNLTASGPRPNPQGS 190
Query: 423 YHYGQINITRTIKVMVSRGHIDGKLRYGFNGISHRDPETPVKLAEYF 563
YHYG +N TRTI + SR I+GKLRY N IS +TP+K+A+++
Sbjct: 191 YHYGLVNTTRTIILANSRATINGKLRYAVNSISFIPADTPLKVADFY 331
>gb|CW297869.1|CW297869 104_780_11462273_116_35646_075 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11462273, DNA
sequence
Length = 604
Score = 65.7 bits (137), Expect(4) = 2e-027
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = +3 / -1
Query: 348 WSINQARSFRWNLTASAARPNPQGSYHYGQINITR 452
+S+NQARS RWNL+A AARPNPQGS+ Y IN+T+
Sbjct: 583 FSMNQARSVRWNLSAGAARPNPQGSFRYSSINVTQ 479
Score = 50.1 bits (103), Expect(4) = 2e-027
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = +3 / -1
Query: 612 PAVNGPLHVIPNVITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVG 752
P G + +VI +R F+E++F+N + + S H+DGYAFF VG
Sbjct: 325 PLNKGAPRIARSVINGTYRGFMELIFQNNDTRMQSYHMDGYAFFVVG 185
Score = 36.3 bits (73), Expect(4) = 2e-027
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +3 / -1
Query: 483 IDGKLRYGFNGISHRDPETPVKLAEYF 563
IDG+ R NG+S+ PETP++LA+ +
Sbjct: 445 IDGRRRATLNGLSYAPPETPLRLADAY 365
Score = 28.1 bits (55), Expect(4) = 2e-027
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3 / -2
Query: 753 MGPGTWSPEMRKTYNLLDTVSRHTI 827
M G W+ + R TYN D V+R TI
Sbjct: 75 MDYGEWTEDSRGTYNKGDGVARSTI 1
>gb|CW482127.1|CW482127 fsbb001f242a23k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f242a23, DNA
sequence
Length = 315
Score = 125 bits (267), Expect = 2e-027
Identities = 53/95 (55%), Positives = 64/95 (67%)
Frame = +3 / +3
Query: 27 AGKTYRLRVCNTGIKASLNFRIQGHDMKLVELEGSHTLQDVYDSLDVHVGHCLSVLVDAD 206
AG+TYR R+ N G+ SLN R QGH MKLVE+EGSHT+Q Y SLDVH+G SVL+ AD
Sbjct: 6 AGRTYRFRITNVGLATSLNIRFQGHTMKLVEVEGSHTMQTTYSSLDVHLGQSYSVLLTAD 185
Query: 207 QAPGDYYMVASTRFIHDAKSASAVIRYAGSSGAPP 311
Q DY +V STRF S +AV+ Y S+G P
Sbjct: 186 QPGFDYAVVVSTRFTAKIISTTAVLDYTNSAGKAP 290
>gb|BG050704.1|BG050704 FM1_71_H08.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 501
Score = 124 bits (265), Expect = 4e-027
Identities = 47/80 (58%), Positives = 59/80 (73%)
Frame = +3 / +1
Query: 783 RKTYNLLDTVSRHTIQVYPRSWTAIMLTFDNAGMWSVRSNVWERYYLGEQFYISVISPAR 962
R+ YNL D ++R+T+QVYP+SWTAI + DN GMW+VRS W R YLG+QFY+ V SPA
Sbjct: 4 RQGYNLRDAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPAN 183
Query: 963 SLRDEYNMPDNALRCGKVVG 1022
S RDE +P NAL CG+ G
Sbjct: 184 SWRDENPIPKNALLCGRASG 243
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,525,268,811
Number of Sequences: 832831
Number of extensions: 23479536
Number of successful extensions: 312781
Number of sequences better than 1.0e-020: 70
length of database: 163,786,556
effective HSP length: 56
effective length of database: 117,148,020
effective search space used: 50725092660
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)