TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115190.2.2
(1172 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW160114.1|CW160114 104_566_11149711_148_36427_024 Sorgh... 318 1e-085
gb|CW266971.1|CW266971 104_737_11400437_148_35293_031 Sorgh... 264 5e-079
gb|CW461444.1|CW461444 fsbb001f209b20f0 Sorghum methylation... 244 3e-071
gb|CW401009.1|CW401009 fsbb001f091j18f0 Sorghum methylation... 221 4e-070
gb|CW160113.1|CW160113 104_566_11149711_116_36428_024 Sorgh... 264 1e-069
gb|CW060595.1|CW060595 104_304_10519937_115_30144 Sorghum m... 225 4e-067
gb|CW333050.1|CW333050 104_830_11481737_116_36040_065 Sorgh... 191 4e-063
gb|CW328836.1|CW328836 104_825_11479519_148_36000_030 Sorgh... 196 7e-049
gb|CW333051.1|CW333051 104_830_11481737_148_36039_065 Sorgh... 155 1e-047
gb|AC169370.3| Sorghum bicolor clone SB_BBc0011I20, WORKING... 129 6e-046
gb|CF484914.1|CF484914 POL1_28_G06.b1_A002 Pollen Sorghum b... 97 5e-044
gb|CW230316.1|CW230316 104_679_11210473_148_37335_015 Sorgh... 174 2e-042
gb|CW198850.1|CW198850 104_623_11183195_116_36840_036 Sorgh... 91 4e-042
gb|BF656908.1|BF656908 OV2_22_E07.g1_A002 Ovary 2 (OV2) Sor... 119 7e-042
gb|CW214306.1|CW214306 104_646_11193944_148_37053_028 Sorgh... 129 2e-040
gb|BG560336.1|BG560336 RHIZ2_73_B09.b1_A003 Rhizome2 (RHIZ2... 144 2e-040
gb|CW380541.1|CW380541 fsbb001f061g11k0 Sorghum methylation... 160 4e-038
gb|CL189041.1|CL189041 104_406_10902014_114_32468_063 Sorgh... 91 1e-035
gb|CW060594.1|CW060594 104_304_10519937_114_30143 Sorghum m... 117 4e-035
gb|BE918829.1|BE918829 FM1_2_E02.g1_A003 Floral-Induced Mer... 95 4e-034
gb|CW100366.1|CW100366 104_467_11004060_116_34389_036 Sorgh... 120 5e-034
gb|CW368387.1|CW368387 fsbb001f042f08k0 Sorghum methylation... 129 6e-033
gb|CL189042.1|CL189042 104_406_10902014_116_32472_063 Sorgh... 85 3e-028
gb|CW328835.1|CW328835 104_825_11479519_116_35999_030 Sorgh... 127 3e-028
gb|BZ350471.1|BZ350471 ht56g09.g1 WGS-SbicolorF (JM107 adap... 87 1e-025
gb|CW214305.1|CW214305 104_646_11193944_116_37049_028 Sorgh... 73 3e-023
>gb|CW160114.1|CW160114 104_566_11149711_148_36427_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11149711, DNA
sequence
Length = 706
Score = 318 bits (688), Expect = 1e-085
Identities = 130/140 (92%), Positives = 138/140 (98%)
Frame = +1 / -3
Query: 1 IFARSMIIQLSQELLMSSDKTIDGRGAQVHIANGAGITVQLAQNVIIHNLHVHDVKHTMG 180
IFA+SMIIQLSQELL+SSDKTIDGRGAQVHIANGAGITVQLA+NVIIHNLHVHDV H+MG
Sbjct: 422 IFAKSMIIQLSQELLVSSDKTIDGRGAQVHIANGAGITVQLARNVIIHNLHVHDVLHSMG 243
Query: 181 GLMRDSPTHIGSRTRADGDGISLFSATNVWIDHISMSNCEDGLIDVVQSSTGITISNCHF 360
GLMRDSPTH+GSRT+ADGDGISLF ATNVWIDHISMSNCEDGLIDVVQSSTGITISNCHF
Sbjct: 242 GLMRDSPTHVGSRTKADGDGISLFQATNVWIDHISMSNCEDGLIDVVQSSTGITISNCHF 63
Query: 361 TNHNDVMLFGASDSWPQDQI 420
TNHNDVMLFGASDS+PQDQ+
Sbjct: 62 TNHNDVMLFGASDSYPQDQM 3
Score = 253 bits (548), Expect = 3e-066
Identities = 105/140 (75%), Positives = 112/140 (80%)
Frame = -1 / +1
Query: 422 MIWSCGQESLAPKSMTSLWLVKWQLEMVIPVELCTTSMRPSSQLDMEMWSIQTLVAEKRE 243
+IWSCG ESLAP S+TSLWLVKWQLEMVIPVELCTTSM PSSQLDMEMWSI TLVA E
Sbjct: 1 IIWSCGYESLAPNSITSLWLVKWQLEMVIPVELCTTSMSPSSQLDMEMWSIHTLVAWNSE 180
Query: 242 MPSPSALVREPMCVGESRMRPPMVCLTSCTCRLWMMTFCASCTVIPAPLAMCTCAPRPXX 63
MPSPSALVR+P CVGESR+RPPM C TS TCRLWM+TF ASCTV+PAPLAMCTCAPRP
Sbjct: 181 MPSPSALVRDPTCVGESRIRPPMECSTSWTCRLWMITFRASCTVMPAPLAMCTCAPRPSM 360
Query: 62 XXXXXXXXXXXXXMIMDRAK 3
MI+D AK
Sbjct: 361 VLSLLTSSSCESWMIIDLAK 420
Score = 54.7 bits (113), Expect(4) = 2e-024
Identities = 21/23 (91%), Positives = 21/23 (91%)
Frame = +3 / -2
Query: 288 VQLRGRPHRRRAELHGDHHLQLP 356
VQLRGR HRR AELHGDHHLQLP
Sbjct: 135 VQLRGRAHRRGAELHGDHHLQLP 67
Score = 47.8 bits (98), Expect(4) = 2e-024
Identities = 17/18 (94%), Positives = 17/18 (94%)
Frame = +2 / -1
Query: 71 GAARRCTSPTAPGSRCSW 124
GAARRCTSPTAP SRCSW
Sbjct: 352 GAARRCTSPTAPASRCSW 299
Score = 40.9 bits (83), Expect(4) = 2e-024
Identities = 17/26 (65%), Positives = 18/26 (69%)
Frame = +3 / -2
Query: 129 KRHHPQPARARRQAHHGRPHARLPHA 206
+R HPQPAR RR A HG P ARL A
Sbjct: 294 ERDHPQPARPRRAALHGGPDARLADA 217
Score = 25.8 bits (50), Expect(4) = 2e-024
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +3 / -2
Query: 3 LRAVHDHPALAG 38
LR V DHPALAG
Sbjct: 420 LRQVDDHPALAG 385
>gb|CW266971.1|CW266971 104_737_11400437_148_35293_031 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11400437, DNA
sequence
Length = 670
Score = 264 bits (572), Expect(2) = 5e-079
Identities = 106/172 (61%), Positives = 128/172 (74%)
Frame = +1 / -2
Query: 100 GAGITVQLAQNVIIHNLHVHDVKHTMGGLMRDSPTHIGSRTRADGDGISLFSATNVWIDH 279
GA IT+Q NVIIHN+HVHD +R SPTH G RTR+DGDGISLF A +VW+DH
Sbjct: 519 GACITLQYVSNVIIHNVHVHDCVPAGNANVRSSPTHYGWRTRSDGDGISLFGARDVWVDH 340
Query: 280 ISMSNCEDGLIDVVQSSTGITISNCHFTNHNDVMLFGASDSWPQDQIMQITVAFNHFGRG 459
++ C DGL+D + ST IT+SN +F +H++VML GASD++ D MQ+T+AFN FG G
Sbjct: 339 CALWRCADGLVDAIMGSTAITVSNSYFAHHDEVMLLGASDAYLPDSGMQVTIAFNRFGPG 160
Query: 460 LVQRMPRCRWGFFHVVNNDYTHWLMYAIGGGDAPTIISQGNRYIAPPNIAAK 615
LVQRMPRCR G+FH+VNNDYT W MYAIGG PTI SQGNRYIAP + AK
Sbjct: 159 LVQRMPRCRRGYFHIVNNDYTSWEMYAIGGSANPTINSQGNRYIAPGDPNAK 4
Score = 180 bits (388), Expect(2) = 4e-053
Identities = 86/166 (51%), Positives = 99/166 (59%)
Frame = -1 / +2
Query: 596 GAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLPKWLKATVICMI 417
GAM*RLPWL+MVG + PPMAY+S V*SLLT WK P+RH GIRCT P P L A V C+
Sbjct: 23 GAM*RLPWLLMVGFALPPMAYISHDV*SLLTMWKYPRRHRGIRCTSPGPNRLNAMVTCIP 202
Query: 416 WSCGQESLAPKSMTSLWLVKWQLEMVIPVELCTTSMRPSSQLDMEMWSIQTLVAEKREMP 237
S SLAP S+TS W K L+ V+ V+ S PS+ WS T A EMP
Sbjct: 203 ESGRYASLAPSSITSSWCAK*LLDTVMAVDPMMASTSPSAHRHSAQWSTHTSRAPNSEMP 382
Query: 236 SPSALVREPMCVGESRMRPPMVCLTSCTCRLWMMTFCASCTVIPAP 99
SPS LVR P CVGE R S TC LWM+T C+V+ AP
Sbjct: 383 SPSDLVRHP*CVGEDRTLALPAGTQSWTCTLWMITLDTYCSVMHAP 520
Score = 52.4 bits (108), Expect(2) = 5e-079
Identities = 21/34 (61%), Positives = 28/34 (82%)
Frame = +1 / -2
Query: 1 IFARSMIIQLSQELLMSSDKTIDGRGAQVHIANG 102
+FA M I+L++ELL++S KTIDGRGA+VHI G
Sbjct: 621 VFASDMAIRLNEELLVNSYKTIDGRGARVHIGGG 520
Score = 50.1 bits (103), Expect(2) = 4e-053
Identities = 21/33 (63%), Positives = 23/33 (69%)
Frame = -3 / +1
Query: 102 AVGDVHLRAAPVDGLVAAHEQLLRELDDHGPRE 4
A DVH RA PVDGLVA H+QLL + D H RE
Sbjct: 520 AAADVHARAPPVDGLVAVHQQLLVQADGHVRRE 618
>gb|CW461444.1|CW461444 fsbb001f209b20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f209b20, DNA
sequence
Length = 495
Score = 244 bits (527), Expect(2) = 3e-071
Identities = 96/131 (73%), Positives = 111/131 (84%)
Frame = +1 / -1
Query: 235 DGISLFSATNVWIDHISMSNCEDGLIDVVQSSTGITISNCHFTNHNDVMLFGASDSWPQD 414
DGIS+ +++VWIDH+SMS C DGLIDVV ST IT+SN HFT+H+ VMLFG S+ PQD
Sbjct: 495 DGISVLWSSHVWIDHVSMSRCADGLIDVVNGSTAITVSNSHFTHHDHVMLFGPSNDNPQD 316
Query: 415 QIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGGDAPTIISQGNRYIA 594
++MQITVAFNHFGRGLVQRMPRCR GFFHVVNNDYTHW+MYAIGG PTIISQGNR+IA
Sbjct: 315 EVMQITVAFNHFGRGLVQRMPRCRSGFFHVVNNDYTHWIMYAIGGNKNPTIISQGNRFIA 136
Query: 595 PPNIAAKVITK 627
P + AK +TK
Sbjct: 135 PDDPNAKEVTK 103
Score = 191 bits (411), Expect(2) = 1e-048
Identities = 82/130 (63%), Positives = 89/130 (68%)
Frame = -1 / +2
Query: 626 LVITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLPK 447
LV +LA GAM R PWLMMVG PPMAYM QCV*SL TTWK P RH GIRCT PLPK
Sbjct: 104 LVTSLALGSSGAMNRFPWLMMVGFLFPPMAYMIQCV*SLFTTWKNPDRHRGIRCTSPLPK 283
Query: 446 WLKATVICMIWSCGQESLAPKSMTSLWLVKWQLEMVIPVELCTTSMRPSSQLDMEMWSIQ 267
WL ATVIC+ SCG L P S+T W VKW L+ VI V+ TTSM PS+ LDME WSI
Sbjct: 284 WLNATVICITSSCGLSLLGPNSITWSWCVKWLLDTVIAVDPFTTSMSPSAHLDMETWSIH 463
Query: 266 TLVAEKREMP 237
T + EMP
Sbjct: 464 TWLDHSTEMP 493
Score = 98.7 bits (209), Expect(3) = 3e-026
Identities = 40/72 (55%), Positives = 50/72 (69%)
Frame = +3 / -3
Query: 411 GPDHADHRRLQPLRQGPGAADAKVPLGLLPRCQQRLHALAHVRHWRRRRANHHQPGQPLH 590
G ADH +QPLRQ GAADA VP+ +LPR +QRLHAL HVRH R + +HHQPG+P+H
Sbjct: 319 GRGDADHGGVQPLRQRAGAADAAVPVRVLPRGEQRLHALDHVRHRREQEPHHHQPGEPVH 140
Query: 591 STTKHRRQSDHQ 626
+ +RQ Q
Sbjct: 139 RPRRSQRQGGDQ 104
Score = 46.9 bits (96), Expect(2) = 3e-071
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +1 / -1
Query: 607 AAKVITKHYAEEGVWKNWVWHTEDDLFMNGAIFNPSGG 720
A +V + Y +K WVW ++ D+ MNGA FN SGG
Sbjct: 120 AKEVTKREYTAYKDYKEWVWKSQGDVMMNGAFFNESGG 7
Score = 29.9 bits (59), Expect(3) = 3e-026
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3 / -3
Query: 606 RRQSDHQALRGRRRVEELGVAHGGRPVHERRHLQSVRR 719
R+ D + + G + ++ +G+ GR ERR LQ VRR
Sbjct: 121 RQGGDQEGVHGVQGLQGVGLEVAGRRHDERRLLQRVRR 8
Score = 29.5 bits (58), Expect(3) = 3e-026
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3 / -3
Query: 288 VQLRGRPHRRRAELHGDHHLQLP 356
V++R R HRR + GDH +Q P
Sbjct: 442 VEVRRRAHRRGERVDGDHGVQQP 374
Score = 24.4 bits (47), Expect(2) = 1e-048
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1 / +2
Query: 719 PPDGLKMAPFMNRS 678
PPD LK APF+ S
Sbjct: 8 PPDSLKKAPFIMTS 49
>gb|CW401009.1|CW401009 fsbb001f091j18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f091j18, DNA
sequence
Length = 684
Score = 221 bits (478), Expect(3) = 4e-070
Identities = 83/95 (87%), Positives = 89/95 (93%)
Frame = +1 / -3
Query: 349 NCHFTNHNDVMLFGASDSWPQDQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHW 528
NCH TNHNDVMLF +SD P+DQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHW
Sbjct: 682 NCHMTNHNDVMLFSSSDKHPEDQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHW 503
Query: 529 LMYAIGGGDAPTIISQGNRYIAPPNIAAKVITKHY 633
LMYAIGG APTIISQGNRYIAPPN+AAK++TKH+
Sbjct: 502 LMYAIGGSKAPTIISQGNRYIAPPNLAAKLVTKHH 398
Score = 186 bits (401), Expect(3) = 2e-058
Identities = 77/94 (81%), Positives = 78/94 (82%)
Frame = -1 / +3
Query: 629 CLVITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLP 450
C V + AA GGAM*R PWLMMVGA PPMAYMSQCV*SLLTTWK PQRHLGI CTRPLP
Sbjct: 402 CFVTSFAARLGGAM*RFPWLMMVGALLPPMAYMSQCV*SLLTTWKNPQRHLGILCTRPLP 581
Query: 449 KWLKATVICMIWSCGQESLAPKSMTSLWLVKWQL 348
KWLKATVICMIWS G SL KSMTSLWLV WQL
Sbjct: 582 KWLKATVICMIWSSGCLSLELKSMTSLWLVMWQL 683
Score = 127 bits (272), Expect(2) = 2e-029
Identities = 50/73 (68%), Positives = 60/73 (82%)
Frame = +3 / -2
Query: 411 GPDHADHRRLQPLRQGPGAADAKVPLGLLPRCQQRLHALAHVRHWRRRRANHHQPGQPLH 590
GPDHADHRRLQPLRQ P A DA+VPLG+LPR QQRLHALAHVRH R++ A+HHQPG+PLH
Sbjct: 620 GPDHADHRRLQPLRQRPRAEDAEVPLGVLPRRQQRLHALAHVRHRRQQGADHHQPGEPLH 441
Query: 591 STTKHRRQSDHQA 629
+ ++ H+A
Sbjct: 440 RAAQPGGEAGHKA 402
Score = 68.0 bits (142), Expect(3) = 3e-021
Identities = 32/46 (69%), Positives = 35/46 (76%)
Frame = -2 / +1
Query: 589 CSGCPG**WLAXXXXXXRT*ASACSRC*QRGRSPSGTLASAAPGPC 452
CSG PG**W A RT*ASACSRC*+RGR+PSGT AS+A G C
Sbjct: 442 CSGSPG**WSAPCCRRWRT*ASACSRC*RRGRTPSGTSASSARGLC 579
Score = 52.4 bits (108), Expect(3) = 3e-021
Identities = 20/22 (90%), Positives = 21/22 (95%)
Frame = -3 / +2
Query: 474 HPLHQAPAEVVEGDGDLHDLVL 409
HPLH+A AEVVEGDGDLHDLVL
Sbjct: 557 HPLHEASAEVVEGDGDLHDLVL 622
Score = 52.4 bits (108), Expect(3) = 4e-070
Identities = 19/28 (67%), Positives = 24/28 (85%)
Frame = +1 / -3
Query: 751 VKPKPGTYVTRLTRFSGTLSCCTGKPC* 834
+KPK G+YVTRLTR++G L+C GKPC*
Sbjct: 271 IKPKNGSYVTRLTRYAGALACRPGKPC* 188
Score = 46.0 bits (94), Expect(3) = 2e-058
Identities = 18/29 (62%), Positives = 21/29 (72%)
Frame = -1 / +3
Query: 719 PPDGLKMAPFMNRSSSVCHTQFFHTPSSA 633
PP +K+AP M RS S CHTQFFH+ S A
Sbjct: 309 PPLTVKLAPSMKRSFSECHTQFFHSDSGA 395
Score = 34.5 bits (69), Expect(3) = 2e-058
Identities = 18/30 (60%), Positives = 19/30 (63%)
Frame = -1 / +3
Query: 827 GLPVQQDSVPEKRVSLVT*VPGLGLTHSLV 738
GLP Q S P RVSLVT* P LGL S +
Sbjct: 195 GLPGLQASAPAYRVSLVT*DPFLGLMRSFL 284
Score = 32.2 bits (64), Expect(3) = 4e-070
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +3 / -2
Query: 648 VEELGVAHGGRPVHERRHLQSVRRRPQAGRHQRVGQAQAR 767
VEELGVA G RP+H L RR + G QA+
Sbjct: 380 VEELGVALGERPLHGGSQLHRQRRPEDQQEFPQEGPHQAQ 261
Score = 26.7 bits (52), Expect(2) = 2e-029
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3 / -2
Query: 753 QAQARNLRYKAHPLLRHTVLLHGQAVL 833
QAQ R LR++AH + R L QA+L
Sbjct: 269 QAQERVLRHQAHAIRRRARLQARQALL 189
Score = 25.4 bits (49), Expect(3) = 3e-021
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = -2 / +1
Query: 832 STACPCSRTVCRRSG*AL*RRFLAWA* 752
S AC R RR *A *RR +WA*
Sbjct: 190 SRACRACRRARRRIA*AW*RRTRSWA* 270
>gb|CW160113.1|CW160113 104_566_11149711_116_36428_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11149711, DNA
sequence
Length = 709
Score = 264 bits (572), Expect = 1e-069
Identities = 110/120 (91%), Positives = 116/120 (96%)
Frame = +1 / +1
Query: 1 IFARSMIIQLSQELLMSSDKTIDGRGAQVHIANGAGITVQLAQNVIIHNLHVHDVKHTMG 180
IFA+SMIIQLSQELL+SSDKTIDGRGAQVHIANGAGITVQLA+NVIIHNLHVHDV H+MG
Sbjct: 349 IFAKSMIIQLSQELLVSSDKTIDGRGAQVHIANGAGITVQLARNVIIHNLHVHDVLHSMG 528
Query: 181 GLMRDSPTHIGSRTRADGDGISLFSATNVWIDHISMSNCEDGLIDVVQSSTGITISNCHF 360
GLMRDSPTH+GSRT+ADGDGISLF ATNVWIDHISMSNCEDGLIDVVQSSTGITIS HF
Sbjct: 529 GLMRDSPTHVGSRTKADGDGISLFQATNVWIDHISMSNCEDGLIDVVQSSTGITISKLHF 708
Score = 202 bits (435), Expect = 1e-050
Identities = 86/119 (72%), Positives = 91/119 (76%)
Frame = -1 / -3
Query: 359 KWQLEMVIPVELCTTSMRPSSQLDMEMWSIQTLVAEKREMPSPSALVREPMCVGESRMRP 180
K LEMVIPVELCTTSM PSSQLDMEMWSI TLVA EMPSPSALVR+P CVGESR+RP
Sbjct: 707 KCSLEMVIPVELCTTSMSPSSQLDMEMWSIHTLVAWNSEMPSPSALVRDPTCVGESRIRP 528
Query: 179 PMVCLTSCTCRLWMMTFCASCTVIPAPLAMCTCAPRPXXXXXXXXXXXXXXXMIMDRAK 3
PM C TS TCRLWM+TF ASCTV+PAPLAMCTCAPRP MI+D AK
Sbjct: 527 PMECSTSWTCRLWMITFRASCTVMPAPLAMCTCAPRPSMVLSLLTSSSCESWMIIDLAK 351
Score = 49.6 bits (102), Expect(4) = 5e-023
Identities = 19/21 (90%), Positives = 19/21 (90%)
Frame = +3 / +3
Query: 288 VQLRGRPHRRRAELHGDHHLQ 350
VQLRGR HRR AELHGDHHLQ
Sbjct: 636 VQLRGRAHRRGAELHGDHHLQ 698
Score = 47.8 bits (98), Expect(4) = 5e-023
Identities = 17/18 (94%), Positives = 17/18 (94%)
Frame = +2 / +2
Query: 71 GAARRCTSPTAPGSRCSW 124
GAARRCTSPTAP SRCSW
Sbjct: 419 GAARRCTSPTAPASRCSW 472
Score = 40.9 bits (83), Expect(4) = 5e-023
Identities = 17/26 (65%), Positives = 18/26 (69%)
Frame = +3 / +3
Query: 129 KRHHPQPARARRQAHHGRPHARLPHA 206
+R HPQPAR RR A HG P ARL A
Sbjct: 477 ERDHPQPARPRRAALHGGPDARLADA 554
Score = 25.8 bits (50), Expect(4) = 5e-023
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +3 / +3
Query: 3 LRAVHDHPALAG 38
LR V DHPALAG
Sbjct: 351 LRQVDDHPALAG 386
>gb|CW060595.1|CW060595 104_304_10519937_115_30144 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10519937, DNA
sequence
Length = 550
Score = 225 bits (485), Expect(2) = 4e-067
Identities = 87/145 (60%), Positives = 108/145 (74%)
Frame = +1 / -1
Query: 100 GAGITVQLAQNVIIHNLHVHDVKHTMGGLMRDSPTHIGSRTRADGDGISLFSATNVWIDH 279
GA IT+Q NVIIHN+HVHD +R SPTH G RTR+DGDGISLF A +VW+DH
Sbjct: 436 GACITLQYVSNVIIHNVHVHDCVPAGNANVRSSPTHYGWRTRSDGDGISLFGARDVWVDH 257
Query: 280 ISMSNCEDGLIDVVQSSTGITISNCHFTNHNDVMLFGASDSWPQDQIMQITVAFNHFGRG 459
++ C DGL+D + ST IT+SN +F +H++VML GASD++ D MQ+T+AFN FG G
Sbjct: 256 CALWRCADGLVDAIMGSTAITVSNSYFAHHDEVMLLGASDAYLPDSGMQVTIAFNRFGPG 77
Query: 460 LVQRMPRCRWGFFHVVNNDYTHWLM 534
LVQRMPRCR G+FH+VNNDYT W M
Sbjct: 76 LVQRMPRCRRGYFHIVNNDYTSWEM 2
Score = 139 bits (298), Expect(2) = 8e-041
Identities = 69/145 (47%), Positives = 80/145 (55%)
Frame = -1 / +3
Query: 533 MSQCV*SLLTTWKKPQRHLGIRCTRPLPKWLKATVICMIWSCGQESLAPKSMTSLWLVKW 354
+S V*SLLT WK P+RH GIRCT P P L A V C+ S SLAP S+TS W K
Sbjct: 3 ISHDV*SLLTMWKYPRRHRGIRCTSPGPNRLNAMVTCIPESGRYASLAPSSITSSWCAK* 182
Query: 353 QLEMVIPVELCTTSMRPSSQLDMEMWSIQTLVAEKREMPSPSALVREPMCVGESRMRPPM 174
L+ V+ V+ S PS+ WS T A EMPSPS LVR P CVGE R
Sbjct: 183 LLDTVMAVDPMMASTSPSAHRHSAQWSTHTSRAPNSEMPSPSDLVRHP*CVGEDRTLALP 362
Query: 173 VCLTSCTCRLWMMTFCASCTVIPAP 99
S TC LWM+T C+V+ AP
Sbjct: 363 AGTQSWTCTLWMITLDTYCSVMHAP 437
Score = 52.4 bits (108), Expect(2) = 4e-067
Identities = 21/34 (61%), Positives = 28/34 (82%)
Frame = +1 / -1
Query: 1 IFARSMIIQLSQELLMSSDKTIDGRGAQVHIANG 102
+FA M I+L++ELL++S KTIDGRGA+VHI G
Sbjct: 538 VFASDMAIRLNEELLVNSYKTIDGRGARVHIGGG 437
Score = 50.1 bits (103), Expect(2) = 8e-041
Identities = 21/33 (63%), Positives = 23/33 (69%)
Frame = -3 / +2
Query: 102 AVGDVHLRAAPVDGLVAAHEQLLRELDDHGPRE 4
A DVH RA PVDGLVA H+QLL + D H RE
Sbjct: 437 AAADVHARAPPVDGLVAVHQQLLVQADGHVRRE 535
>gb|CW333050.1|CW333050 104_830_11481737_116_36040_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481737, DNA
sequence
Length = 653
Score = 191 bits (411), Expect(3) = 4e-063
Identities = 77/108 (71%), Positives = 88/108 (81%)
Frame = +1 / -3
Query: 304 GLIDVVQSSTGITISNCHFTNHNDVMLFGASDSWPQDQIMQITVAFNHFGRGLVQRMPRC 483
GL+DVV ST +TISN HFT H+ VMLFGASD+ +D+ MQ+TVAFNHFG+GLVQRMPRC
Sbjct: 651 GLVDVVDGSTAVTISNGHFTRHDHVMLFGASDAAVKDKAMQVTVAFNHFGKGLVQRMPRC 472
Query: 484 RWGFFHVVNNDYTHWLMYAIGGGDAPTIISQGNRYIAPPNIAAKVITK 627
R GFFHVVNNDYTHWLMYAIGG PTIISQGNR+ A + K +TK
Sbjct: 471 RHGFFHVVNNDYTHWLMYAIGGSQNPTIISQGNRFRAVDDGRFKEVTK 328
Score = 145 bits (311), Expect(2) = 2e-038
Identities = 67/108 (62%), Positives = 70/108 (64%)
Frame = -1 / +2
Query: 626 LVITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLPK 447
LV +L A R PWLMMVG PPMAYMSQCV*SL TTWKKP R GIRCT P PK
Sbjct: 329 LVTSLNLPSSTARNRFPWLMMVGFWLPPMAYMSQCV*SLFTTWKKPWRQRGIRCTSPFPK 508
Query: 446 WLKATVICMIWSCGQESLAPKSMTSLWLVKWQLEMVIPVELCTTSMRP 303
WL ATV C+ S SLAP S+T LVKW LEMV VE TTS P
Sbjct: 509 WLNATVTCIALSLTAASLAPNSITWSCLVKWPLEMVTAVEPSTTSTSP 652
Score = 91.3 bits (193), Expect(2) = 4e-022
Identities = 39/72 (54%), Positives = 47/72 (65%)
Frame = +3 / -2
Query: 411 GPDHADHRRLQPLRQGPGAADAKVPLGLLPRCQQRLHALAHVRHWRRRRANHHQPGQPLH 590
G A HR +QPLR+G GAADA +P LLPR +QRLHALAHVRH R+ HHQPG+P+
Sbjct: 544 GQGDAGHRGVQPLRKGAGAADAALPPWLLPRGEQRLHALAHVRHRRQPEPYHHQPGEPVP 365
Query: 591 STTKHRRQSDHQ 626
+ Q Q
Sbjct: 364 RRRRREVQGGDQ 329
Score = 53.3 bits (110), Expect(3) = 4e-063
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = +1 / -3
Query: 613 KVITKHYAEEGVWKNWVWHTEDDLFMNGAIFNPSGG 720
+V + Y +K+WVW ++DDLF+NGA FN SGG
Sbjct: 339 EVTKREYTPYSEYKDWVWKSQDDLFLNGAFFNQSGG 232
Score = 38.2 bits (77), Expect(3) = 4e-063
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +1 / -3
Query: 715 GGAPKQVDTNEWVKPKPGTYVTRLTRFSGTLSCCTGKPC*RPAG 846
G ++ D + ++ K G Y LTR++G L+C GK C* G
Sbjct: 234 GENERRFDRLDLIQAKGGQYAELLTRYAGALNCRVGKKC*AGRG 103
Score = 35.9 bits (72), Expect(2) = 2e-038
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -1 / +2
Query: 722 APPDGLKMAPFMNRSSSVCHTQFFHTPSSA*CLVIT 615
+PPD LK AP NRSS HTQ ++ L++T
Sbjct: 230 SPPDWLKKAPLRNRSSCDFHTQSLYSLYGVYSLLVT 337
Score = 35.4 bits (71), Expect(2) = 4e-022
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +3 / -2
Query: 618 DHQALRGRRRVEELGVAHGGRPVHERRHLQSVRRRPQA 731
D + + +RV+ LGV GRPV + LQ VRRR +A
Sbjct: 334 DQEGVHAVQRVQGLGVEVAGRPVPQWGLLQPVRRRERA 221
>gb|CW328836.1|CW328836 104_825_11479519_148_36000_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11479519, DNA
sequence
Length = 712
Score = 196 bits (422), Expect = 7e-049
Identities = 76/127 (59%), Positives = 98/127 (77%)
Frame = +1 / -3
Query: 1 IFARSMIIQLSQELLMSSDKTIDGRGAQVHIANGAGITVQLAQNVIIHNLHVHDVKHTMG 180
IF R M+I L +EL+M+S KTIDGRGA VHIANGA IT+Q NVIIH LH+HD K T
Sbjct: 497 IFKRDMVITLKEELIMNSFKTIDGRGANVHIANGACITIQYITNVIIHGLHIHDCKPTGN 318
Query: 181 GLMRDSPTHIGSRTRADGDGISLFSATNVWIDHISMSNCEDGLIDVVQSSTGITISNCHF 360
++R SP+H G RT ADGD +S+F +++VW+DH S+SNC DGLID + ST IT+SN +F
Sbjct: 317 AMVRSSPSHYGWRTMADGDAVSIFGSSHVWVDHCSLSNCADGLIDAIMGSTAITVSNNYF 138
Query: 361 TNHNDVM 381
T+HN+V+
Sbjct: 137 THHNEVV 117
Score = 105 bits (224), Expect = 1e-021
Identities = 55/125 (44%), Positives = 66/125 (52%)
Frame = -1 / +1
Query: 377 TSLWLVKWQLEMVIPVELCTTSMRPSSQLDMEMWSIQTLVAEKREMPSPSALVREPMCVG 198
TSLW VK L+ V+ V+ S+RPS+QL+ E WS QT + K + SPSA+VR P +G
Sbjct: 121 TSLWWVK*LLDTVMAVDPMMASIRPSAQLESEQWSTQTWLEPKMDTASPSAMVRHP*WLG 300
Query: 197 ESRMRPPMVCLTSCTCRLWMMTFCASCTVIPAPLAMCTCAPRPXXXXXXXXXXXXXXXMI 18
E R V L S R WMMT V+ APLAMCT APRP M
Sbjct: 301 ELRTMAFPVGLQSWMWRPWMMTLVMYWMVMQAPLAMCTLAPRPSMVLKLFMMSSSLSVMT 480
Query: 17 MDRAK 3
M R K
Sbjct: 481 MSRLK 495
>gb|CW333051.1|CW333051 104_830_11481737_148_36039_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481737, DNA
sequence
Length = 629
Score = 155 bits (334), Expect(2) = 1e-047
Identities = 60/108 (55%), Positives = 81/108 (75%)
Frame = +1 / +2
Query: 100 GAGITVQLAQNVIIHNLHVHDVKHTMGGLMRDSPTHIGSRTRADGDGISLFSATNVWIDH 279
GA IT+Q +NVI+HNLH+HD GG++RDS H G R +DGDG+S+ ++++WIDH
Sbjct: 305 GAQITLQNVRNVILHNLHIHDAAPRGGGVIRDSKHHWGLRGESDGDGVSVMGSSDIWIDH 484
Query: 280 ISMSNCEDGLIDVVQSSTGITISNCHFTNHNDVMLFGASDSWPQDQIM 423
+SM +C DGL+DVV ST +TISN HFT H+ VMLFGASD+ +D+ M
Sbjct: 485 VSMRSCADGLVDVVDGSTAVTISNGHFTRHDHVMLFGASDAAVKDKAM 628
Score = 96.4 bits (204), Expect(2) = 6e-029
Identities = 49/100 (49%), Positives = 57/100 (57%)
Frame = -1 / -3
Query: 398 SLAPKSMTSLWLVKWQLEMVIPVELCTTSMRPSSQLDMEMWSIQTLVAEKREMPSPSALV 219
SLAP S+T LVKW LEMV VE TTS PS+QL ++ WSIQ + E PSPS
Sbjct: 603 SLAPNSITWSCLVKWPLEMVTAVEPSTTSTSPSAQLRIDTWSIQMSLDPITETPSPSLSP 424
Query: 218 REPMCVGESRMRPPMVCLTSCTCRLWMMTFCASCTVIPAP 99
R P ES + PP S RLW +TF C+VI AP
Sbjct: 423 RRPQWCFESLITPPPRGAASWMWRLWRITFRTFCSVICAP 304
Score = 56.5 bits (117), Expect(2) = 1e-047
Identities = 22/30 (73%), Positives = 27/30 (90%)
Frame = +1 / +2
Query: 4 FARSMIIQLSQELLMSSDKTIDGRGAQVHI 93
FAR M+I L +ELL++SDKTIDGRGAQVH+
Sbjct: 212 FARDMVINLCRELLVTSDKTIDGRGAQVHV 301
Score = 53.3 bits (110), Expect(2) = 6e-029
Identities = 22/30 (73%), Positives = 24/30 (80%)
Frame = -3 / -2
Query: 93 DVHLRAAPVDGLVAAHEQLLRELDDHGPRE 4
DVHLRAAPVDGLVA H+QL E+D H RE
Sbjct: 301 DVHLRAAPVDGLVAGHQQLPAEVDHHVARE 212
>gb|AC169370.3| Sorghum bicolor clone SB_BBc0011I20, WORKING DRAFT SEQUENCE, 9
unordered pieces
Length = 143922
Score = 129 bits (277), Expect(4) = 6e-046
Identities = 49/90 (54%), Positives = 65/90 (72%)
Frame = +1 / -1
Query: 214 SRTRADGDGISLFSATNVWIDHISMSNCEDGLIDVVQSSTGITISNCHFTNHNDVMLFGA 393
S + + GDGI++FS+T+VW+DH ++ C DGLIDV ST +T+SN NHN ML G
Sbjct: 48144 SSSESQGDGITVFSSTDVWVDHCTLEACADGLIDVTDGSTNVTLSNNVLRNHNKTMLLGH 47965
Query: 394 SDSWPQDQIMQITVAFNHFGRGLVQRMPRC 483
SD + D+ M++TVAFN FG GL+QRMPRC
Sbjct: 47964 SDDFTDDKNMKVTVAFNRFGPGLIQRMPRC 47875
Score = 49.6 bits (102), Expect(4) = 6e-046
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +1 / -3
Query: 478 RCRWGFFHVVNNDYTHWLMYAIGG 549
RCR+G FHV+ NDY +W +YAIGG
Sbjct: 16465 RCRFGLFHVIKNDYINWEIYAIGG 16394
Score = 46.4 bits (95), Expect(4) = 6e-046
Identities = 19/38 (50%), Positives = 27/38 (71%)
Frame = +1 / -1
Query: 4 FARSMIIQLSQELLMSSDKTIDGRGAQVHIANGAGITV 117
FAR M I+ Q+L+++SDKT+DGRGA V + +G V
Sbjct: 48330 FARDMTIRPKQDLVVASDKTVDGRGAGVVVGDGGACFV 48217
Score = 45.5 bits (93), Expect(4) = 6e-046
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +1 / -1
Query: 613 KVITKHYAEEGVWKNWVWHTEDDLFMNGAIFNPSGGAPKQVDTNEWVKP 759
+V + A + W W W +EDD +NGA F SG +V + KP
Sbjct: 16098 QVTKREGAPDSEWSKWTWISEDDTMLNGAFFTSSGTPGPEVKAPGFAKP 15952
>gb|CF484914.1|CF484914 POL1_28_G06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_28_G06_A002 3', mRNA sequence
Length = 601
Score = 97.3 bits (206), Expect(3) = 5e-044
Identities = 36/38 (94%), Positives = 36/38 (94%)
Frame = +1 / +1
Query: 610 AKVITKHYAEEGVWKNWVWHTEDDLFMNGAIFNPSGGA 723
AKVITKHYAEEG WKNWVWHTEDDLFMNGAIF PSGGA
Sbjct: 1 AKVITKHYAEEGEWKNWVWHTEDDLFMNGAIFEPSGGA 114
Score = 87.7 bits (185), Expect(3) = 5e-035
Identities = 35/37 (94%), Positives = 36/37 (97%)
Frame = -1 / -3
Query: 722 APPDGLKMAPFMNRSSSVCHTQFFHTPSSA*CLVITL 612
APPDG KMAPFMNRSSSVCHTQFFH+PSSA*CLVITL
Sbjct: 113 APPDGSKMAPFMNRSSSVCHTQFFHSPSSA*CLVITL 3
Score = 85.8 bits (181), Expect(3) = 5e-044
Identities = 31/40 (77%), Positives = 35/40 (87%)
Frame = +1 / +1
Query: 715 GGAPKQVDTNEWVKPKPGTYVTRLTRFSGTLSCCTGKPC* 834
G +Q+++NEWVKPKPGTYVTRLTRFSGTLSCC KPC*
Sbjct: 109 GAVQRQINSNEWVKPKPGTYVTRLTRFSGTLSCCMSKPC* 228
Score = 73.5 bits (154), Expect(3) = 8e-028
Identities = 30/36 (83%), Positives = 32/36 (88%)
Frame = +3 / +3
Query: 612 QSDHQALRGRRRVEELGVAHGGRPVHERRHLQSVRR 719
QSDHQALRGR VEELGVAHGGRPVHER HL++V R
Sbjct: 3 QSDHQALRGRGGVEELGVAHGGRPVHERSHLRAVGR 110
Score = 68.4 bits (143), Expect(3) = 5e-035
Identities = 29/40 (72%), Positives = 32/40 (80%)
Frame = -1 / -3
Query: 833 QHGLPVQQDSVPEKRVSLVT*VPGLGLTHSLVSTCLGAPP 714
QHGL +QQD+VPEKRVSLVT VPGLG THSL+ CL P
Sbjct: 227 QHGLLMQQDNVPEKRVSLVTYVPGLGFTHSLLLICLCTAP 108
Score = 57.0 bits (118), Expect(4) = 6e-023
Identities = 25/36 (69%), Positives = 26/36 (72%)
Frame = -2 / -1
Query: 844 RPAFSTACPCSRTVCRRSG*AL*RRFLAWA*PTRWC 737
R A STAC CSRT+C RS *AL R LAWA PTR C
Sbjct: 238 RRAISTACSCSRTMCPRSA*ALSRTSLAWASPTRCC 131
Score = 57.0 bits (118), Expect(3) = 8e-028
Identities = 26/40 (65%), Positives = 31/40 (77%)
Frame = +3 / +3
Query: 726 QAGRHQRVGQAQARNLRYKAHPLLRHTVLLHGQAVLKAGR 845
+A + QRVG+AQAR++R KAH LL H VLLH QAVL A R
Sbjct: 120 EADQQQRVGEAQARDVRDKAHALLGHIVLLHEQAVLIARR 239
Score = 51.5 bits (106), Expect(4) = 6e-023
Identities = 20/22 (90%), Positives = 20/22 (90%)
Frame = -2 / -1
Query: 676 PPCATPSSSTRLLPRSAW*SLW 611
PPCATPSSST LPRSAW*SLW
Sbjct: 67 PPCATPSSSTPPLPRSAW*SLW 2
Score = 39.6 bits (80), Expect(3) = 5e-044
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +2 / +2
Query: 1076 IYVYSLYNMNHLCLRLV*K 1132
+Y+Y LYN NHLCLRLV K
Sbjct: 509 VYIYRLYNRNHLCLRLVEK 565
Score = 37.3 bits (75), Expect(3) = 8e-028
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = +3 / +3
Query: 1080 TYTVCIT*TTSVCDWSK 1130
TYT CIT TTSVCDW K
Sbjct: 513 TYTGCITGTTSVCDWLK 563
Score = 35.9 bits (72), Expect(4) = 6e-023
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = -1 / -3
Query: 1127 RPIANRGGSCYTNCI 1083
+PIA+RGGSCYT CI
Sbjct: 560 QPIADRGGSCYTTCI 516
Score = 35.9 bits (72), Expect(3) = 5e-035
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = -2 / -1
Query: 1138 YLFLDQSQTEVVHVIQTVYV 1079
Y+F +QSQTEVV VIQ VYV
Sbjct: 571 YVFFNQSQTEVVPVIQPVYV 512
Score = 24.4 bits (47), Expect(4) = 6e-023
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = -3 / -2
Query: 711 RIEDGAVHEQ 682
R+EDG+VHEQ
Sbjct: 102 RLEDGSVHEQ 73
>gb|CW230316.1|CW230316 104_679_11210473_148_37335_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11210473, DNA
sequence
Length = 670
Score = 174 bits (375), Expect = 2e-042
Identities = 72/79 (91%), Positives = 78/79 (98%)
Frame = +1 / -1
Query: 1 IFARSMIIQLSQELLMSSDKTIDGRGAQVHIANGAGITVQLAQNVIIHNLHVHDVKHTMG 180
IFA+SMIIQLSQELL+SSDKTIDGRGAQVHIANGAGITVQLA+NVIIHNLHVHDV H+MG
Sbjct: 238 IFAKSMIIQLSQELLVSSDKTIDGRGAQVHIANGAGITVQLARNVIIHNLHVHDVLHSMG 59
Query: 181 GLMRDSPTHIGSRTRADGD 237
GLMRDSPTH+GSRT+ADGD
Sbjct: 58 GLMRDSPTHVGSRTKADGD 2
Score = 126 bits (269), Expect = 8e-028
Identities = 52/78 (66%), Positives = 57/78 (73%)
Frame = -1 / +3
Query: 236 SPSALVREPMCVGESRMRPPMVCLTSCTCRLWMMTFCASCTVIPAPLAMCTCAPRPXXXX 57
SPSALVR+P CVGESR+RPPM C TS TCRLWM+TF ASCTV+PAPLAMCTCAPRP
Sbjct: 3 SPSALVRDPTCVGESRIRPPMECSTSWTCRLWMITFRASCTVMPAPLAMCTCAPRPSMVL 182
Query: 56 XXXXXXXXXXXMIMDRAK 3
MI+D AK
Sbjct: 183 SLLTSSSCESWMIIDLAK 236
>gb|CW198850.1|CW198850 104_623_11183195_116_36840_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11183195, DNA
sequence
Length = 729
Score = 91.3 bits (193), Expect(3) = 4e-042
Identities = 33/35 (94%), Positives = 33/35 (94%)
Frame = +1 / +2
Query: 619 ITKHYAEEGVWKNWVWHTEDDLFMNGAIFNPSGGA 723
ITKHYAEEG WKNWVWHTEDDLFMNGAIF PSGGA
Sbjct: 8 ITKHYAEEGEWKNWVWHTEDDLFMNGAIFEPSGGA 112
Score = 85.8 bits (181), Expect(3) = 4e-042
Identities = 31/40 (77%), Positives = 35/40 (87%)
Frame = +1 / +2
Query: 715 GGAPKQVDTNEWVKPKPGTYVTRLTRFSGTLSCCTGKPC* 834
G +Q+++NEWVKPKPGTYVTRLTRFSGTLSCC KPC*
Sbjct: 107 GAVQRQINSNEWVKPKPGTYVTRLTRFSGTLSCCMSKPC* 226
Score = 83.5 bits (176), Expect(3) = 1e-033
Identities = 33/35 (94%), Positives = 34/35 (97%)
Frame = -1 / -1
Query: 722 APPDGLKMAPFMNRSSSVCHTQFFHTPSSA*CLVI 618
APPDG KMAPFMNRSSSVCHTQFFH+PSSA*CLVI
Sbjct: 111 APPDGSKMAPFMNRSSSVCHTQFFHSPSSA*CLVI 7
Score = 69.8 bits (146), Expect(3) = 1e-026
Identities = 28/35 (80%), Positives = 31/35 (88%)
Frame = +3 / +1
Query: 615 SDHQALRGRRRVEELGVAHGGRPVHERRHLQSVRR 719
+DHQALRGR VEELGVAHGGRPVHER HL++V R
Sbjct: 4 ADHQALRGRGGVEELGVAHGGRPVHERSHLRAVGR 108
Score = 68.4 bits (143), Expect(3) = 1e-033
Identities = 29/40 (72%), Positives = 32/40 (80%)
Frame = -1 / -1
Query: 833 QHGLPVQQDSVPEKRVSLVT*VPGLGLTHSLVSTCLGAPP 714
QHGL +QQD+VPEKRVSLVT VPGLG THSL+ CL P
Sbjct: 225 QHGLLMQQDNVPEKRVSLVTYVPGLGFTHSLLLICLCTAP 106
Score = 57.0 bits (118), Expect(4) = 1e-020
Identities = 25/36 (69%), Positives = 26/36 (72%)
Frame = -2 / -2
Query: 844 RPAFSTACPCSRTVCRRSG*AL*RRFLAWA*PTRWC 737
R A STAC CSRT+C RS *AL R LAWA PTR C
Sbjct: 236 RRAISTACSCSRTMCPRSA*ALSRTSLAWASPTRCC 129
Score = 57.0 bits (118), Expect(3) = 1e-026
Identities = 26/40 (65%), Positives = 31/40 (77%)
Frame = +3 / +1
Query: 726 QAGRHQRVGQAQARNLRYKAHPLLRHTVLLHGQAVLKAGR 845
+A + QRVG+AQAR++R KAH LL H VLLH QAVL A R
Sbjct: 118 EADQQQRVGEAQARDVRDKAHALLGHIVLLHEQAVLIARR 237
Score = 44.6 bits (91), Expect(4) = 1e-020
Identities = 18/20 (90%), Positives = 18/20 (90%)
Frame = -2 / -2
Query: 676 PPCATPSSSTRLLPRSAW*S 617
PPCATPSSST LPRSAW*S
Sbjct: 65 PPCATPSSSTPPLPRSAW*S 6
Score = 39.6 bits (80), Expect(3) = 4e-042
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +2 / +3
Query: 1076 IYVYSLYNMNHLCLRLV*K 1132
+Y+Y LYN NHLCLRLV K
Sbjct: 507 VYIYRLYNRNHLCLRLVEK 563
Score = 37.3 bits (75), Expect(3) = 1e-026
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = +3 / +1
Query: 1080 TYTVCIT*TTSVCDWSK 1130
TYT CIT TTSVCDW K
Sbjct: 511 TYTGCITGTTSVCDWLK 561
Score = 35.9 bits (72), Expect(4) = 1e-020
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = -1 / -1
Query: 1127 RPIANRGGSCYTNCI 1083
+PIA+RGGSCYT CI
Sbjct: 558 QPIADRGGSCYTTCI 514
Score = 35.9 bits (72), Expect(3) = 1e-033
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = -2 / -2
Query: 1138 YLFLDQSQTEVVHVIQTVYV 1079
Y+F +QSQTEVV VIQ VYV
Sbjct: 569 YVFFNQSQTEVVPVIQPVYV 510
Score = 24.4 bits (47), Expect(4) = 1e-020
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = -3 / -3
Query: 711 RIEDGAVHEQ 682
R+EDG+VHEQ
Sbjct: 100 RLEDGSVHEQ 71
>gb|BF656908.1|BF656908 OV2_22_E07.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 539
Score = 119 bits (255), Expect(3) = 7e-042
Identities = 47/62 (75%), Positives = 51/62 (82%)
Frame = +1 / +1
Query: 442 NHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGGDAPTIISQGNRYIAPPNIAAKVI 621
NHFG+GLVQRMPRCR GFFHVVNNDYTHWLMYAIGG PTIISQGNR+ A + K +
Sbjct: 1 NHFGKGLVQRMPRCRHGFFHVVNNDYTHWLMYAIGGSQNPTIISQGNRFRAVDDGRFKEV 180
Query: 622 TK 627
TK
Sbjct: 181 TK 186
Score = 96.4 bits (204), Expect(2) = 9e-024
Identities = 41/61 (67%), Positives = 42/61 (68%)
Frame = -1 / -1
Query: 626 LVITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLPK 447
LV +L A R PWLMMVG PPMAYMSQCV*SL TTWKKP R GIRCT P PK
Sbjct: 185 LVTSLNLPSSTARNRFPWLMMVGFWLPPMAYMSQCV*SLFTTWKKPWRQRGIRCTSPFPK 6
Query: 446 W 444
W
Sbjct: 5 W 3
Score = 53.3 bits (110), Expect(3) = 7e-042
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = +1 / +1
Query: 613 KVITKHYAEEGVWKNWVWHTEDDLFMNGAIFNPSGG 720
+V + Y +K+WVW ++DDLF+NGA FN SGG
Sbjct: 175 EVTKREYTPYSEYKDWVWKSQDDLFLNGAFFNQSGG 282
Score = 38.2 bits (77), Expect(3) = 7e-042
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +1 / +1
Query: 715 GGAPKQVDTNEWVKPKPGTYVTRLTRFSGTLSCCTGKPC*RPAG 846
G ++ D + ++ K G Y LTR++G L+C GK C* G
Sbjct: 280 GENERRFDRLDLIQAKGGQYAELLTRYAGALNCRVGKKC*AGRG 411
Score = 35.9 bits (72), Expect(2) = 9e-024
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -1 / -1
Query: 722 APPDGLKMAPFMNRSSSVCHTQFFHTPSSA*CLVIT 615
+PPD LK AP NRSS HTQ ++ L++T
Sbjct: 284 SPPDWLKKAPLRNRSSCDFHTQSLYSLYGVYSLLVT 177
>gb|CW214306.1|CW214306 104_646_11193944_148_37053_028 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11193944, DNA
sequence
Length = 703
Score = 129 bits (277), Expect(3) = 2e-040
Identities = 49/90 (54%), Positives = 65/90 (72%)
Frame = +1 / +2
Query: 214 SRTRADGDGISLFSATNVWIDHISMSNCEDGLIDVVQSSTGITISNCHFTNHNDVMLFGA 393
S + + GDGI++FS+T+VW+DH ++ C DGLIDV ST +T+SN NHN ML G
Sbjct: 53 SSSESQGDGITVFSSTDVWVDHCTLEACADGLIDVTDGSTNVTLSNNVLRNHNKTMLLGH 232
Query: 394 SDSWPQDQIMQITVAFNHFGRGLVQRMPRC 483
SD + D+ M++TVAFN FG GL+QRMPRC
Sbjct: 233 SDDFTDDKNMKVTVAFNRFGPGLIQRMPRC 322
Score = 49.6 bits (102), Expect(3) = 2e-040
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +1 / +3
Query: 478 RCRWGFFHVVNNDYTHWLMYAIGG 549
RCR+G FHV+ NDY +W +YAIGG
Sbjct: 444 RCRFGLFHVIKNDYINWEIYAIGG 515
Score = 27.2 bits (53), Expect(3) = 2e-040
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1 / +1
Query: 547 GGDAPTIISQGNRYIA 594
G +PTI+S GNR++A
Sbjct: 514 GSASPTILSHGNRFLA 561
>gb|BG560336.1|BG560336 RHIZ2_73_B09.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 557
Score = 144 bits (309), Expect(2) = 2e-040
Identities = 55/78 (70%), Positives = 64/78 (82%)
Frame = +1 / +1
Query: 388 GASDSWPQDQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGGDAPTI 567
G SDS+ +D+ MQ+T+AFNHFG GL+QRMPRCR G+FHVVNNDYTHW MYAIGG PTI
Sbjct: 7 GHSDSYVKDKAMQVTIAFNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTI 186
Query: 568 ISQGNRYIAPPNIAAKVI 621
SQGNRY+AP N AK +
Sbjct: 187 NSQGNRYLAPTNPFAKEV 240
Score = 111 bits (238), Expect(2) = 2e-027
Identities = 51/78 (65%), Positives = 58/78 (74%)
Frame = -1 / -1
Query: 617 TLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLPKWLK 438
+LA F GA *RLPWL+MVG++ PPMAY+SQ V*SL TTWK P RHLGIR RP PKWLK
Sbjct: 236 SLANGFVGAR*RLPWLLMVGSALPPMAYISQWV*SLFTTWK*PCRHLGIR*MRPSPKWLK 57
Query: 437 ATVICMIWSCGQESLAPK 384
A V C+ S ESL P+
Sbjct: 56 AIVTCIALSFT*ESLWPR 3
Score = 46.4 bits (95), Expect(2) = 2e-040
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = +1 / +1
Query: 646 VWKNWVWHTEDDLFMNGAIFNPSG 717
VWK+W W +E DL +NGA F PSG
Sbjct: 364 VWKSWNWRSEGDLLLNGAYFTPSG 435
Score = 32.7 bits (65), Expect(2) = 2e-027
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = -1 / -1
Query: 716 PDGLKMAPFMNRSSSVCHTQFFHTPSSA*CLVITLAAM 603
PDG+K APF +RS S Q F T + L++T +++
Sbjct: 434 PDGVK*APFSSRSPSDLQFQLFQTV*AVSTLLVTCSSV 321
>gb|CW380541.1|CW380541 fsbb001f061g11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f061g11, DNA
sequence
Length = 507
Score = 160 bits (344), Expect = 4e-038
Identities = 61/106 (57%), Positives = 79/106 (74%)
Frame = +1 / -1
Query: 64 IDGRGAQVHIANGAGITVQLAQNVIIHNLHVHDVKHTMGGLMRDSPTHIGSRTRADGDGI 243
IDGRGA VHIANGA IT+Q NVIIH LH+H+ K T + R SP+H G RT ADGD +
Sbjct: 507 IDGRGANVHIANGACITIQYIPNVIIHALHIHECKPTGNAMARSSPSHYGWRTMADGDAV 328
Query: 244 SLFSATNVWIDHISMSNCEDGLIDVVQSSTGITISNCHFTNHNDVM 381
S+F +++VW+DH S+SNC DGL D + ST IT+SN +FT+H +V+
Sbjct: 327 SIFGSSHVWVDHCSLSNCADGLTDAIMGSTAITVSNNYFTHHTEVV 190
>gb|CL189041.1|CL189041 104_406_10902014_114_32468_063 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10902014, DNA
sequence
Length = 660
Score = 90.9 bits (192), Expect(3) = 1e-035
Identities = 35/48 (72%), Positives = 38/48 (79%)
Frame = +1 / -1
Query: 478 RCRWGFFHVVNNDYTHWLMYAIGGGDAPTIISQGNRYIAPPNIAAKVI 621
RCR G+FHVVNNDYTHW MYAIGG PTI SQGNRY+AP N AK +
Sbjct: 423 RCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQGNRYLAPTNPFAKEV 280
Score = 75.3 bits (158), Expect(3) = 1e-022
Identities = 33/47 (70%), Positives = 38/47 (80%)
Frame = -1 / +2
Query: 617 TLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHL 477
+LA F GA *RLPWL+MVG++ PPMAY+SQ V*SL TTWK P RHL
Sbjct: 284 SLANGFVGAR*RLPWLLMVGSALPPMAYISQWV*SLFTTWK*PCRHL 424
Score = 57.0 bits (118), Expect(3) = 1e-035
Identities = 20/29 (68%), Positives = 26/29 (89%)
Frame = +1 / -2
Query: 394 SDSWPQDQIMQITVAFNHFGRGLVQRMPR 480
SDS+ +D+ MQ+T+AFNHFG GL+QRMPR
Sbjct: 656 SDSYVKDKAMQVTIAFNHFGEGLIQRMPR 570
Score = 46.4 bits (95), Expect(3) = 1e-035
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = +1 / -1
Query: 646 VWKNWVWHTEDDLFMNGAIFNPSG 717
VWK+W W +E DL +NGA F PSG
Sbjct: 156 VWKSWNWRSEGDLLLNGAYFTPSG 85
Score = 42.3 bits (86), Expect(3) = 1e-022
Identities = 19/30 (63%), Positives = 20/30 (66%)
Frame = -1 / +1
Query: 482 HLGIRCTRPLPKWLKATVICMIWSCGQESL 393
HLGIR RP PKWLKA V C+ S ESL
Sbjct: 568 HLGIR*MRPSPKWLKAIVTCIALSFT*ESL 657
Score = 32.7 bits (65), Expect(3) = 1e-022
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = -1 / +2
Query: 716 PDGLKMAPFMNRSSSVCHTQFFHTPSSA*CLVITLAAM 603
PDG+K APF +RS S Q F T + L++T +++
Sbjct: 86 PDGVK*APFSSRSPSDLQFQLFQTV*AVSTLLVTCSSV 199
>gb|CW060594.1|CW060594 104_304_10519937_114_30143 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10519937, DNA
sequence
Length = 670
Score = 117 bits (251), Expect(2) = 4e-035
Identities = 46/82 (56%), Positives = 57/82 (69%)
Frame = +1 / +1
Query: 100 GAGITVQLAQNVIIHNLHVHDVKHTMGGLMRDSPTHIGSRTRADGDGISLFSATNVWIDH 279
GA IT+Q NVIIHN+HVHD +R SPTH G RTR+DGDGISLF A +VW+DH
Sbjct: 424 GACITLQYVSNVIIHNVHVHDCVPAGNANVRSSPTHYGWRTRSDGDGISLFGARDVWVDH 603
Query: 280 ISMSNCEDGLIDVVQSSTGITI 345
++ C DGL+D + ST IT+
Sbjct: 604 CALWRCADGLVDAIMGSTAITV 669
Score = 72.1 bits (151), Expect(2) = 9e-021
Identities = 35/81 (43%), Positives = 41/81 (50%)
Frame = -1 / -3
Query: 341 VIPVELCTTSMRPSSQLDMEMWSIQTLVAEKREMPSPSALVREPMCVGESRMRPPMVCLT 162
V+ V+ S PS+ WS T A EMPSPS LVR P CVGE R
Sbjct: 665 VMAVDPMMASTSPSAHRHSAQWSTHTSRAPNSEMPSPSDLVRHP*CVGEDRTLALPAGTQ 486
Query: 161 SCTCRLWMMTFCASCTVIPAP 99
S TC LWM+T C+V+ AP
Sbjct: 485 SWTCTLWMITLDTYCSVMHAP 423
Score = 52.4 bits (108), Expect(2) = 4e-035
Identities = 21/34 (61%), Positives = 28/34 (82%)
Frame = +1 / +1
Query: 1 IFARSMIIQLSQELLMSSDKTIDGRGAQVHIANG 102
+FA M I+L++ELL++S KTIDGRGA+VHI G
Sbjct: 322 VFASDMAIRLNEELLVNSYKTIDGRGARVHIGGG 423
Score = 50.1 bits (103), Expect(2) = 9e-021
Identities = 21/33 (63%), Positives = 23/33 (69%)
Frame = -3 / -2
Query: 102 AVGDVHLRAAPVDGLVAAHEQLLRELDDHGPRE 4
A DVH RA PVDGLVA H+QLL + D H RE
Sbjct: 423 AAADVHARAPPVDGLVAVHQQLLVQADGHVRRE 325
>gb|BE918829.1|BE918829 FM1_2_E02.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 539
Score = 94.5 bits (200), Expect(3) = 4e-034
Identities = 36/48 (75%), Positives = 41/48 (85%)
Frame = +1 / +2
Query: 484 RWGFFHVVNNDYTHWLMYAIGGGDAPTIISQGNRYIAPPNIAAKVITK 627
R+GFFHVVNNDYTHW+MYAIGG PTIISQGNR+IAP + AK +TK
Sbjct: 2 RYGFFHVVNNDYTHWIMYAIGGNKNPTIISQGNRFIAPDDPNAKEVTK 145
Score = 46.9 bits (96), Expect(3) = 4e-034
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +1 / +2
Query: 607 AAKVITKHYAEEGVWKNWVWHTEDDLFMNGAIFNPSGG 720
A +V + Y +K WVW ++ D+ MNGA FN SGG
Sbjct: 128 AKEVTKREYTAYKDYKEWVWKSQGDVMMNGAFFNESGG 241
Score = 43.7 bits (89), Expect(3) = 4e-034
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +1 / +2
Query: 715 GGAPKQVDTNEWVKPKPGTYVTRLTRFSGTLSCCTGKPC* 834
G ++ D +++ K G YV +LTRF+G L C G+PC*
Sbjct: 239 GQNERKYDELDFIPAKHGRYVGQLTRFAGPLKCIVGQPC* 358
>gb|CW100366.1|CW100366 104_467_11004060_116_34389_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11004060, DNA
sequence
Length = 530
Score = 120 bits (256), Expect(2) = 5e-034
Identities = 46/87 (52%), Positives = 62/87 (71%)
Frame = +1 / -1
Query: 214 SRTRADGDGISLFSATNVWIDHISMSNCEDGLIDVVQSSTGITISNCHFTNHNDVMLFGA 393
S + + GDGI++FS+T+VW+DH ++ C DGLIDV ST +T+SN NHN ML G
Sbjct: 263 SSSESQGDGITVFSSTDVWVDHCTLEACADGLIDVTDGSTNVTLSNNVLRNHNKTMLLGH 84
Query: 394 SDSWPQDQIMQITVAFNHFGRGLVQRM 474
SD + D+ M++TVAFN FG GL+QRM
Sbjct: 83 SDDFTDDKNMKVTVAFNRFGPGLIQRM 3
Score = 46.4 bits (95), Expect(2) = 5e-034
Identities = 19/38 (50%), Positives = 27/38 (71%)
Frame = +1 / -1
Query: 4 FARSMIIQLSQELLMSSDKTIDGRGAQVHIANGAGITV 117
FAR M I+ Q+L+++SDKT+DGRGA V + +G V
Sbjct: 449 FARDMTIRPKQDLVVASDKTVDGRGAGVVVGDGGACFV 336
>gb|CW368387.1|CW368387 fsbb001f042f08k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f042f08, DNA
sequence
Length = 536
Score = 129 bits (277), Expect(2) = 6e-033
Identities = 49/90 (54%), Positives = 65/90 (72%)
Frame = +1 / -3
Query: 214 SRTRADGDGISLFSATNVWIDHISMSNCEDGLIDVVQSSTGITISNCHFTNHNDVMLFGA 393
S + + GDGI++FS+T+VW+DH ++ C DGLIDV ST +T+SN NHN ML G
Sbjct: 375 SSSESQGDGITVFSSTDVWVDHCTLEACADGLIDVTDGSTNVTLSNNVLRNHNKTMLLGH 196
Query: 394 SDSWPQDQIMQITVAFNHFGRGLVQRMPRC 483
SD + D+ M++TVAFN FG GL+QRMPRC
Sbjct: 195 SDDFTDDKNMKVTVAFNRFGPGLIQRMPRC 106
Score = 33.1 bits (66), Expect(2) = 6e-033
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +1 / -3
Query: 34 QELLMSSDKTIDGRGAQVHIANGAG 108
Q+L+++SDKT+DGRG + + G
Sbjct: 534 QDLVVASDKTVDGRGPRAWVVGDGG 460
>gb|CL189042.1|CL189042 104_406_10902014_116_32472_063 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10902014, DNA
sequence
Length = 717
Score = 85.4 bits (180), Expect(2) = 3e-028
Identities = 32/42 (76%), Positives = 34/42 (80%)
Frame = +1 / +3
Query: 478 RCRWGFFHVVNNDYTHWLMYAIGGGDAPTIISQGNRYIAPPN 603
RCR G+FHVVNNDYTHW MYAIGG PT SQGNRY+AP N
Sbjct: 588 RCRHGYFHVVNNDYTHWEMYAIGGSAEPTHHSQGNRYLAPTN 713
Score = 64.8 bits (135), Expect(2) = 3e-028
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = +1 / +1
Query: 376 VMLFGASDSWPQDQIMQITVAFNHFGRGLVQRMPR 480
VML G SDS+ +D+ MQ+T+AFNHFG GL+QRMPR
Sbjct: 337 VMLLGHSDSYVKDKAMQVTIAFNHFGEGLIQRMPR 441
>gb|CW328835.1|CW328835 104_825_11479519_116_35999_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11479519, DNA
sequence
Length = 614
Score = 127 bits (272), Expect = 3e-028
Identities = 52/84 (61%), Positives = 63/84 (75%)
Frame = +1 / +2
Query: 1 IFARSMIIQLSQELLMSSDKTIDGRGAQVHIANGAGITVQLAQNVIIHNLHVHDVKHTMG 180
IF R M+I L +EL+M+S KTIDGRGA VHIANGA IT+Q NVIIH LH+HD K T
Sbjct: 362 IFKRDMVITLKEELIMNSFKTIDGRGANVHIANGACITIQYITNVIIHGLHIHDCKPTGN 541
Query: 181 GLMRDSPTHIGSRTRADGDGISLF 252
++R SP+H G RT ADGD +S+F
Sbjct: 542 AMVRSSPSHYGWRTMADGDAVSIF 613
>gb|BZ350471.1|BZ350471 ht56g09.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ht56g09 5', DNA sequence
Length = 596
Score = 86.8 bits (183), Expect(3) = 1e-025
Identities = 32/38 (84%), Positives = 36/38 (94%)
Frame = +1 / -1
Query: 520 THWLMYAIGGGDAPTIISQGNRYIAPPNIAAKVITKHY 633
THWLMYAIGG APTIISQGNRYIAPPN+AAK++TKH+
Sbjct: 596 THWLMYAIGGSKAPTIISQGNRYIAPPNLAAKLVTKHH 483
Score = 67.5 bits (141), Expect(4) = 6e-023
Identities = 27/36 (75%), Positives = 28/36 (77%)
Frame = -1 / +1
Query: 629 CLVITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQC 522
C V + AA GGAM*R PWLMMVGA PPMAYMSQC
Sbjct: 487 CFVTSFAARLGGAM*RFPWLMMVGALLPPMAYMSQC 594
Score = 46.0 bits (94), Expect(4) = 6e-023
Identities = 18/29 (62%), Positives = 21/29 (72%)
Frame = -1 / +1
Query: 719 PPDGLKMAPFMNRSSSVCHTQFFHTPSSA 633
PP +K+AP M RS S CHTQFFH+ S A
Sbjct: 394 PPLTVKLAPSMKRSFSECHTQFFHSDSGA 480
Score = 37.3 bits (75), Expect(3) = 1e-025
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = +1 / -1
Query: 751 VKPKPGTYVTRLTRFSGTLS 810
+KPK G+YVTRLTR++G L+
Sbjct: 356 IKPKNGSYVTRLTRYAGALA 297
Score = 32.2 bits (64), Expect(3) = 1e-025
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +3 / -3
Query: 648 VEELGVAHGGRPVHERRHLQSVRRRPQAGRHQRVGQAQAR 767
VEELGVA G RP+H L RR + G QA+
Sbjct: 465 VEELGVALGERPLHGGSQLHRQRRPEDQQEFPQEGPHQAQ 346
Score = 27.6 bits (54), Expect(4) = 6e-023
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = -1 / +1
Query: 806 SVPEKRVSLVT*VPGLGLTHSLV 738
S P RVSLVT* P LGL S +
Sbjct: 301 SAPAYRVSLVT*DPFLGLMRSFL 369
Score = 27.6 bits (54), Expect(4) = 6e-023
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3 / +3
Query: 861 QPLTPTGRPSARLARAAGQC 802
Q L P G P + +AR AG+C
Sbjct: 60 QQLRPAGAPVSYMARPAGEC 119
>gb|CW214305.1|CW214305 104_646_11193944_116_37049_028 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11193944, DNA
sequence
Length = 550
Score = 72.5 bits (152), Expect(3) = 3e-023
Identities = 29/52 (55%), Positives = 36/52 (69%)
Frame = +1 / -3
Query: 328 STGITISNCHFTNHNDVMLFGASDSWPQDQIMQITVAFNHFGRGLVQRMPRC 483
ST +T+SN NHN ML SD + D+ M++TVAFN FG GL+QRMPRC
Sbjct: 539 STNVTLSNNVLRNHNKTMLLVHSDDFTDDKNMKVTVAFNRFGPGLIQRMPRC 384
Score = 49.6 bits (102), Expect(3) = 3e-023
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +1 / -1
Query: 478 RCRWGFFHVVNNDYTHWLMYAIGG 549
RCR+G FHV+ NDY +W +YAIGG
Sbjct: 262 RCRFGLFHVIKNDYINWEIYAIGG 191
Score = 29.5 bits (58), Expect(3) = 3e-023
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +1 / -2
Query: 547 GGDAPTIISQGNRYIA 594
G +PTI+SQGNR++A
Sbjct: 192 GSASPTILSQGNRFLA 145
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,395,119,963
Number of Sequences: 832831
Number of extensions: 24457602
Number of successful extensions: 222174
Number of sequences better than 1.0e-020: 27
length of database: 163,786,556
effective HSP length: 55
effective length of database: 117,980,851
effective search space used: 39523585085
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)