TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115184.2.2
(682 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW330183.1|CW330183 104_827_11480239_116_36007_032 Sorgh... 331 5e-090
gb|CW330184.1|CW330184 104_827_11480239_148_36008_032 Sorgh... 331 5e-090
gb|CW182308.1|CW182308 104_597_11164002_116_36658_067 Sorgh... 278 5e-074
gb|BG411749.1|BG411749 OV2_37_E12.g1_A002 Ovary 2 (OV2) Sor... 237 1e-061
gb|CF480173.1|CF480173 POL1_64_D11.b1_A002 Pollen Sorghum b... 237 1e-061
gb|CF485728.1|CF485728 POL1_33_F06.b1_A002 Pollen Sorghum b... 237 1e-061
gb|CF486033.1|CF486033 POL1_35_F09.b1_A002 Pollen Sorghum b... 237 1e-061
gb|CF487334.1|CF487334 POL1_43_D12.b1_A002 Pollen Sorghum b... 237 1e-061
gb|CF489185.1|CF489185 POL1_55_F02.b1_A002 Pollen Sorghum b... 237 1e-061
gb|CF489342.1|CF489342 POL1_57_B05.b1_A002 Pollen Sorghum b... 237 1e-061
gb|CL165002.1|CL165002 104_359_10808294_114_31816_278 Sorgh... 232 3e-060
gb|CW241738.1|CW241738 104_701_11218937_148_37556_079 Sorgh... 220 2e-056
gb|CF480188.1|CF480188 POL1_64_G01.b1_A002 Pollen Sorghum b... 211 1e-053
gb|BG322873.1|BG322873 EM1_15_B11.b1_A002 Embryo 1 (EM1) So... 199 3e-050
gb|CL149387.1|CL149387 104_330_10777794_114_31353_114 Sorgh... 115 1e-049
gb|CW406843.1|CW406843 fsbb001f100a22k0 Sorghum methylation... 115 1e-049
gb|CL197000.1|CL197000 104_423_10943444_116_32330_070 Sorgh... 193 2e-048
gb|CF486155.1|CF486155 POL1_36_C04.b1_A002 Pollen Sorghum b... 193 2e-048
gb|CF480656.1|CF480656 POL1_67_D01.b1_A002 Pollen Sorghum b... 127 5e-048
gb|CL187602.1|CL187602 104_403_10901000_116_32464_026 Sorgh... 115 2e-047
gb|BG239833.1|BG239833 OV1_29_F03.g1_A002 Ovary 1 (OV1) Sor... 190 2e-047
gb|BG240402.1|BG240402 OV1_29_F03.b1_A002 Ovary 1 (OV1) Sor... 190 2e-047
gb|BH246023.1|BH246023 pSB1633.1 S. bicolor BTx623 PstI-dig... 181 9e-045
gb|CL196999.1|CL196999 104_423_10943444_114_32326_070 Sorgh... 175 7e-043
gb|CW346335.1|CW346335 104_849_11488970_116_36220_003 Sorgh... 174 1e-042
gb|CW270778.1|CW270778 104_742_11402626_148_35337_037 Sorgh... 172 5e-042
gb|BG355410.1|BG355410 EM1_16_B04.b1_A002 Embryo 1 (EM1) So... 171 1e-041
gb|CW333143.1|CW333143 104_831_11481784_148_36046_064 Sorgh... 115 3e-041
gb|BG739374.1|BG739374 EM1_82_B09.g1_A002 Embryo 1 (EM1) So... 103 8e-041
gb|CW271205.1|CW271205 104_743_11402872_116_35341_060 Sorgh... 168 9e-041
gb|CF481307.1|CF481307 POL1_71_E06.b1_A002 Pollen Sorghum b... 162 4e-039
gb|BZ423602.1|BZ423602 id51c01.g1 WGS-SbicolorF (DH5a methy... 161 8e-039
gb|CF485402.1|CF485402 POL1_31_G04.b1_A002 Pollen Sorghum b... 160 1e-038
gb|CF489359.1|CF489359 POL1_57_D04.b1_A002 Pollen Sorghum b... 160 1e-038
gb|CF480663.1|CF480663 POL1_67_D09.b1_A002 Pollen Sorghum b... 159 5e-038
gb|CF487982.1|CF487982 POL1_47_C02.b1_A002 Pollen Sorghum b... 159 5e-038
gb|CF488593.1|CF488593 POL1_51_A10.b1_A002 Pollen Sorghum b... 159 5e-038
gb|CW258561.1|CW258561 104_724_11227944_148_35167_088 Sorgh... 115 6e-038
gb|BG412065.1|BG412065 OV2_37_E12.b1_A002 Ovary 2 (OV2) Sor... 158 1e-037
gb|CF481619.1|CF481619 POL1_73_B09.b1_A002 Pollen Sorghum b... 158 1e-037
gb|CF481930.1|CF481930 POL1_75_E11.b1_A002 Pollen Sorghum b... 153 2e-036
gb|CF481916.1|CF481916 POL1_75_D02.b1_A002 Pollen Sorghum b... 152 4e-036
gb|CF483278.1|CF483278 POL1_21_D07.b1_A002 Pollen Sorghum b... 90 1e-035
gb|CW197885.1|CW197885 104_622_11181920_148_36831_026 Sorgh... 151 1e-035
gb|CF489851.1|CF489851 POL1_61_B02.b1_A002 Pollen Sorghum b... 148 8e-035
gb|CW333142.1|CW333142 104_831_11481784_116_36045_064 Sorgh... 103 8e-035
gb|CF486365.1|CF486365 POL1_37_F12.b1_A002 Pollen Sorghum b... 147 1e-034
gb|BZ422208.1|BZ422208 id51a01.b1 WGS-SbicolorF (DH5a methy... 144 1e-033
gb|BG323126.1|BG323126 EM1_15_B11.g1_A002 Embryo 1 (EM1) So... 144 1e-033
gb|CF482926.1|CF482926 POL1_10_C07.b1_A002 Pollen Sorghum b... 141 1e-033
gb|CW463314.1|CW463314 fsbb001f211n16f0 Sorghum methylation... 98 5e-030
gb|CF489718.1|CF489718 POL1_59_F04.b1_A002 Pollen Sorghum b... 79 2e-029
gb|CL187601.1|CL187601 104_403_10901000_114_32460_026 Sorgh... 115 8e-029
gb|CD213604.1|CD213604 HS1_52_B12.b1_A012 Heat-shocked seed... 95 4e-028
gb|CD462003.1|CD462003 SA1_36_H06.b1_A002 Salicylic acid-tr... 95 4e-028
gb|BI098131.1|BI098131 IP1_32_D12.g1_A002 Immature pannicle... 95 4e-028
gb|BE597262.1|BE597262 PI1_70_B02.g1_A002 Pathogen induced ... 95 4e-028
gb|CD212571.1|CD212571 HS1_6_F12.b1_A012 Heat-shocked seedl... 95 4e-028
gb|CW070897.1|CW070897 104_323_10591301_114_30471 Sorghum m... 100 5e-028
gb|CF485801.1|CF485801 POL1_33_F06.g1_A002 Pollen Sorghum b... 125 6e-028
gb|CW241737.1|CW241737 104_701_11218937_116_37555_079 Sorgh... 121 1e-026
gb|CW401940.1|CW401940 fsbb001f093a03f0 Sorghum methylation... 96 1e-026
gb|CW232350.1|CW232350 104_685_11212772_116_37364_080 Sorgh... 95 2e-026
gb|CF481266.1|CF481266 POL1_71_A04.b1_A002 Pollen Sorghum b... 99 4e-026
gb|CF481922.1|CF481922 POL1_75_D09.b1_A002 Pollen Sorghum b... 118 7e-026
gb|CF490015.1|CF490015 POL1_62_A05.b1_A002 Pollen Sorghum b... 97 3e-025
gb|CW102281.1|CW102281 104_470_11011256_148_34413_024 Sorgh... 96 3e-023
gb|CW390139.1|CW390139 fsbb001f075k21k0 Sorghum methylation... 96 3e-023
gb|CF430289.1|CF430289 PH1_27_G01.b1_A002 Phosphorous-defic... 68 4e-022
gb|CL175908.1|CL175908 104_381_10892772_148_31764_372 Sorgh... 68 4e-022
gb|CW191731.1|CW191731 104_613_11178652_148_36941_002 Sorgh... 68 4e-022
>gb|CW330183.1|CW330183 104_827_11480239_116_36007_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11480239, DNA
sequence
Length = 728
Score = 331 bits (718), Expect = 5e-090
Identities = 136/157 (86%), Positives = 147/157 (93%)
Frame = +1 / -2
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLGRYKDEKDVEDV+V GCT+ GTTNGLRIKSYEDSKSS K +KF+YE +TMDNV
Sbjct: 556 GISVGSLGRYKDEKDVEDVKVKGCTLVGTTNGLRIKSYEDSKSSPKVTKFVYEDVTMDNV 377
Query: 181 SYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLV 360
SYPIIIDQKYCPNNICV+SGASKVAV DVVFKNIHGTSNTPEAITLNCA+NLPCQGVQL
Sbjct: 376 SYPIIIDQKYCPNNICVRSGASKVAVTDVVFKNIHGTSNTPEAITLNCADNLPCQGVQLH 197
Query: 361 NVDIKYNGSGNKTMAVCKNAIGKSIGLAKELACI*TN 471
NVDIKYN S NKTMAVCKNA+GKS GL+KELACI*++
Sbjct: 196 NVDIKYNKSNNKTMAVCKNAVGKSFGLSKELACI*SS 86
Score = 260 bits (563), Expect = 1e-068
Identities = 112/136 (82%), Positives = 117/136 (86%)
Frame = -3 / +3
Query: 467 VQMHASSFAKPMDLPMAFLQTAMVLLPDPLYLMSTLTSCTPWHGRLLAQLSVMASGVLEV 288
+QMHASSF KP DLP AFLQTAMVLL D LYLMSTL SCTPWHGRL AQLSVMASGVLEV
Sbjct: 90 LQMHASSFDKPKDLPTAFLQTAMVLLLDLLYLMSTLWSCTPWHGRLSAQLSVMASGVLEV 269
Query: 287 PWMFLKTTSLTATLEAPDLTQMLLGQYFWSMMMG*ETLSMVMPSYRNLLALSDDLESSYD 108
PWMFLKTTS+TATL+APDLTQML GQYFWSMM+G ETLSMV SY NL+ L DDLESSYD
Sbjct: 270 PWMFLKTTSVTATLDAPDLTQMLFGQYFWSMMIGYETLSMVTSSYTNLVTLGDDLESSYD 449
Query: 107 LMRRPFVVPAIVHPVT 60
LMRRP VVP V P T
Sbjct: 450 LMRRPLVVPTSVQPFT 497
Score = 127 bits (273), Expect(2) = 3e-042
Identities = 55/65 (84%), Positives = 60/65 (92%)
Frame = -2 / +2
Query: 465 SNARQLLCQADGLADGILADGHGLVAGSIVLDVDVDELHALAWQVVGAVERDGLRRVGGA 286
S+AR+LL QA+GLADG+LADGHGLV G +VLDVDV ELHALAWQVVGAVERDGL RVGGA
Sbjct: 92 SDARELL*QAEGLADGVLADGHGLVVGLVVLDVDVVELHALAWQVVGAVERDGLGRVGGA 271
Query: 285 VDVLE 271
VDVLE
Sbjct: 272 VDVLE 286
Score = 126 bits (269), Expect(2) = 9e-046
Identities = 52/63 (82%), Positives = 55/63 (87%)
Frame = +3 / -1
Query: 276 EHPRHLQHAGGHHAQLRQQPAMPGRAARQRRHQVQWIRQQDHGRLQECHRQVHRLGKGAG 455
EHPRHLQHA GHHAQLR+QPAMPGRAA QRRHQVQ ++QQDHGRLQE RQV RL KGA
Sbjct: 281 EHPRHLQHARGHHAQLRRQPAMPGRAAPQRRHQVQQVQQQDHGRLQERRRQVLRLVKGAR 102
Query: 456 VHL 464
VHL
Sbjct: 101 VHL 93
Score = 79.0 bits (166), Expect(2) = 9e-046
Identities = 36/71 (50%), Positives = 40/71 (56%)
Frame = +3 / -1
Query: 3 HQRRQPGALQXXXXXXXXXXXXVHDRRHHERPAHQVVRGLQVVAQGQQVPVRXXXXXXXX 182
HQRR+PG +Q +H HH+RPAHQVVRGLQVVAQG QV VR
Sbjct: 554 HQRREPGEVQGREGRGGREGERLHAGGHHQRPAHQVVRGLQVVAQGHQVRVRGRDHGQRL 375
Query: 183 XXXXXRPEVLP 215
RPEVLP
Sbjct: 374 VPDHHRPEVLP 342
Score = 65.2 bits (136), Expect(2) = 3e-042
Identities = 25/35 (71%), Positives = 26/35 (74%)
Frame = -1 / +1
Query: 175 CPW*CPRTGTCWP*ATTWSPRTT*CAGRSWCRRSC 71
CPW PRT T P ATTWSPRTT*CAGR WC +C
Sbjct: 382 CPWSRPRTRTW*PWATTWSPRTT*CAGRWWCPPAC 486
>gb|CW330184.1|CW330184 104_827_11480239_148_36008_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11480239, DNA
sequence
Length = 729
Score = 331 bits (718), Expect = 5e-090
Identities = 136/157 (86%), Positives = 147/157 (93%)
Frame = +1 / +2
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLGRYKDEKDVEDV+V GCT+ GTTNGLRIKSYEDSKSS K +KF+YE +TMDNV
Sbjct: 221 GISVGSLGRYKDEKDVEDVKVKGCTLVGTTNGLRIKSYEDSKSSPKVTKFVYEDVTMDNV 400
Query: 181 SYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLV 360
SYPIIIDQKYCPNNICV+SGASKVAV DVVFKNIHGTSNTPEAITLNCA+NLPCQGVQL
Sbjct: 401 SYPIIIDQKYCPNNICVRSGASKVAVTDVVFKNIHGTSNTPEAITLNCADNLPCQGVQLH 580
Query: 361 NVDIKYNGSGNKTMAVCKNAIGKSIGLAKELACI*TN 471
NVDIKYN S NKTMAVCKNA+GKS GL+KELACI*++
Sbjct: 581 NVDIKYNKSNNKTMAVCKNAVGKSFGLSKELACI*SS 691
Score = 261 bits (564), Expect = 9e-069
Identities = 113/140 (80%), Positives = 118/140 (84%)
Frame = -3 / -1
Query: 479 VSQLVQMHASSFAKPMDLPMAFLQTAMVLLPDPLYLMSTLTSCTPWHGRLLAQLSVMASG 300
V +QMHASSF KP DLP AFLQTAMVLL D LYLMSTL SCTPWHGRL AQLSVMASG
Sbjct: 699 VGSELQMHASSFDKPKDLPTAFLQTAMVLLLDLLYLMSTLWSCTPWHGRLSAQLSVMASG 520
Query: 299 VLEVPWMFLKTTSLTATLEAPDLTQMLLGQYFWSMMMG*ETLSMVMPSYRNLLALSDDLE 120
VLEVPWMFLKTTS+TATL+APDLTQML GQYFWSMM+G ETLSMV SY NL+ L DDLE
Sbjct: 519 VLEVPWMFLKTTSVTATLDAPDLTQMLFGQYFWSMMIGYETLSMVTSSYTNLVTLGDDLE 340
Query: 119 SSYDLMRRPFVVPAIVHPVT 60
SSYDLMRRP VVP V P T
Sbjct: 339 SSYDLMRRPLVVPTSVQPFT 280
Score = 127 bits (273), Expect(2) = 3e-042
Identities = 55/65 (84%), Positives = 60/65 (92%)
Frame = -2 / -3
Query: 465 SNARQLLCQADGLADGILADGHGLVAGSIVLDVDVDELHALAWQVVGAVERDGLRRVGGA 286
S+AR+LL QA+GLADG+LADGHGLV G +VLDVDV ELHALAWQVVGAVERDGL RVGGA
Sbjct: 685 SDARELL*QAEGLADGVLADGHGLVVGLVVLDVDVVELHALAWQVVGAVERDGLGRVGGA 506
Query: 285 VDVLE 271
VDVLE
Sbjct: 505 VDVLE 491
Score = 126 bits (269), Expect(2) = 9e-046
Identities = 52/63 (82%), Positives = 55/63 (87%)
Frame = +3 / +1
Query: 276 EHPRHLQHAGGHHAQLRQQPAMPGRAARQRRHQVQWIRQQDHGRLQECHRQVHRLGKGAG 455
EHPRHLQHA GHHAQLR+QPAMPGRAA QRRHQVQ ++QQDHGRLQE RQV RL KGA
Sbjct: 496 EHPRHLQHARGHHAQLRRQPAMPGRAAPQRRHQVQQVQQQDHGRLQERRRQVLRLVKGAR 675
Query: 456 VHL 464
VHL
Sbjct: 676 VHL 684
Score = 79.0 bits (166), Expect(2) = 9e-046
Identities = 36/71 (50%), Positives = 40/71 (56%)
Frame = +3 / +1
Query: 3 HQRRQPGALQXXXXXXXXXXXXVHDRRHHERPAHQVVRGLQVVAQGQQVPVRXXXXXXXX 182
HQRR+PG +Q +H HH+RPAHQVVRGLQVVAQG QV VR
Sbjct: 223 HQRREPGEVQGREGRGGREGERLHAGGHHQRPAHQVVRGLQVVAQGHQVRVRGRDHGQRL 402
Query: 183 XXXXXRPEVLP 215
RPEVLP
Sbjct: 403 VPDHHRPEVLP 435
Score = 65.2 bits (136), Expect(2) = 3e-042
Identities = 25/35 (71%), Positives = 26/35 (74%)
Frame = -1 / -2
Query: 175 CPW*CPRTGTCWP*ATTWSPRTT*CAGRSWCRRSC 71
CPW PRT T P ATTWSPRTT*CAGR WC +C
Sbjct: 395 CPWSRPRTRTW*PWATTWSPRTT*CAGRWWCPPAC 291
>gb|CW182308.1|CW182308 104_597_11164002_116_36658_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11164002, DNA
sequence
Length = 608
Score = 278 bits (602), Expect = 5e-074
Identities = 114/129 (88%), Positives = 121/129 (93%)
Frame = +1 / +2
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLGRYKDEKDVEDV+V GCT+ GTTNGLRIKSYEDSKSS K +KF+YE +TMDNV
Sbjct: 221 GISVGSLGRYKDEKDVEDVKVKGCTLVGTTNGLRIKSYEDSKSSPKVTKFVYEDVTMDNV 400
Query: 181 SYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLV 360
SYPIIIDQKYCPNNICV+SGASKVAV DVVFKNIHGTSNTPEAITLNCA+NLPCQGVQL
Sbjct: 401 SYPIIIDQKYCPNNICVRSGASKVAVTDVVFKNIHGTSNTPEAITLNCADNLPCQGVQLH 580
Query: 361 NVDIKYNGS 387
NVDIKYN S
Sbjct: 581 NVDIKYNKS 607
Score = 213 bits (459), Expect = 3e-054
Identities = 90/109 (82%), Positives = 94/109 (86%)
Frame = -3 / -3
Query: 386 DPLYLMSTLTSCTPWHGRLLAQLSVMASGVLEVPWMFLKTTSLTATLEAPDLTQMLLGQY 207
D LYLMSTL SCTPWHGRL AQLSVMASGVLEVPWMFLKTTS+TATL+APDLTQML GQY
Sbjct: 606 DLLYLMSTLWSCTPWHGRLSAQLSVMASGVLEVPWMFLKTTSVTATLDAPDLTQMLFGQY 427
Query: 206 FWSMMMG*ETLSMVMPSYRNLLALSDDLESSYDLMRRPFVVPAIVHPVT 60
FWSMM+G ETLSMV SY NL+ L DDLESSYDLMRRP VVP V P T
Sbjct: 426 FWSMMIGYETLSMVTSSYTNLVTLGDDLESSYDLMRRPLVVPTSVQPFT 280
Score = 83.5 bits (176), Expect(2) = 5e-033
Identities = 32/37 (86%), Positives = 34/37 (91%)
Frame = +3 / +1
Query: 276 EHPRHLQHAGGHHAQLRQQPAMPGRAARQRRHQVQWI 386
EHPRHLQHA GHHAQLR+QPAMPGRAA QRRHQVQ +
Sbjct: 496 EHPRHLQHARGHHAQLRRQPAMPGRAAPQRRHQVQQV 606
Score = 81.3 bits (171), Expect(2) = 3e-028
Identities = 35/39 (89%), Positives = 36/39 (92%)
Frame = -2 / -2
Query: 387 GSIVLDVDVDELHALAWQVVGAVERDGLRRVGGAVDVLE 271
G +VLDVDV ELHALAWQVVGAVERDGL RVGGAVDVLE
Sbjct: 607 GLVVLDVDVVELHALAWQVVGAVERDGLGRVGGAVDVLE 491
Score = 79.0 bits (166), Expect(2) = 5e-033
Identities = 36/71 (50%), Positives = 40/71 (56%)
Frame = +3 / +1
Query: 3 HQRRQPGALQXXXXXXXXXXXXVHDRRHHERPAHQVVRGLQVVAQGQQVPVRXXXXXXXX 182
HQRR+PG +Q +H HH+RPAHQVVRGLQVVAQG QV VR
Sbjct: 223 HQRREPGEVQGREGRGGREGERLHAGGHHQRPAHQVVRGLQVVAQGHQVRVRGRDHGQRL 402
Query: 183 XXXXXRPEVLP 215
RPEVLP
Sbjct: 403 VPDHHRPEVLP 435
Score = 65.2 bits (136), Expect(2) = 3e-028
Identities = 25/35 (71%), Positives = 26/35 (74%)
Frame = -1 / -1
Query: 175 CPW*CPRTGTCWP*ATTWSPRTT*CAGRSWCRRSC 71
CPW PRT T P ATTWSPRTT*CAGR WC +C
Sbjct: 395 CPWSRPRTRTW*PWATTWSPRTT*CAGRWWCPPAC 291
>gb|BG411749.1|BG411749 OV2_37_E12.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 670
Score = 237 bits (512), Expect = 1e-061
Identities = 97/157 (61%), Positives = 119/157 (75%)
Frame = +1 / +2
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GIS+GSLGRYKDEKDV D+ V CT+ T+NGLRIK+YED+ S L ASK YE I M++
Sbjct: 29 GISIGSLGRYKDEKDVTDINVKDCTLKKTSNGLRIKAYEDAASVLTASKIHYENIKMEDS 208
Query: 181 SYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLV 360
S PIIID KYCPN IC SGASKV V DV FKN+ GTS +PEA++L C++ +PC GV +
Sbjct: 209 SNPIIIDMKYCPNKICTASGASKVTVKDVSFKNVTGTSASPEAVSLLCSDKIPCTGVTMD 388
Query: 361 NVDIKYNGSGNKTMAVCKNAIGKSIGLAKELACI*TN 471
NV ++Y+G NKTMAVC+NA G + G KELAC *T+
Sbjct: 389 NVKVEYSGKNNKTMAVCQNAKGSATGCLKELACF*TS 499
Score = 132 bits (282), Expect = 7e-030
Identities = 68/125 (54%), Positives = 83/125 (66%)
Frame = -3 / -2
Query: 458 HASSFAKPMDLPMAFLQTAMVLLPDPLYLMSTLTSCTPWHGRLLAQLSVMASGVLEVPWM 279
HASS +P+ LP+AF TAMVLL PLY TL+ TP G L Q + ASG+ EVP
Sbjct: 486 HASSLRQPVALPLAFWHTAMVLLFLPLYSTLTLSMVTPVQGILSEQSRLTASGLAEVPVT 307
Query: 278 FLKTTSLTATLEAPDLTQMLLGQYFWSMMMG*ETLSMVMPSYRNLLALSDDLESSYDLMR 99
FLK TSLT TLEAP Q+LLGQYF SM+MG + S++M S L A+S + SSY L+R
Sbjct: 306 FLKETSLTVTLEAPLAVQILLGQYFMSMIMGFDESSILMFS*WILEAVSTEAASSYALIR 127
Query: 98 RPFVV 84
RP +V
Sbjct: 126 RPLLV 112
>gb|CF480173.1|CF480173 POL1_64_D11.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_64_D11_A002 3', mRNA sequence
Length = 637
Score = 237 bits (512), Expect = 1e-061
Identities = 97/157 (61%), Positives = 119/157 (75%)
Frame = +1 / +2
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GIS+GSLGRYKDEKDV D+ V CT+ T+NGLRIK+YED+ S L ASK YE I M++
Sbjct: 77 GISIGSLGRYKDEKDVTDINVKDCTLKKTSNGLRIKAYEDAASVLTASKIHYENIKMEDS 256
Query: 181 SYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLV 360
S PIIID KYCPN IC SGASKV V DV FKN+ GTS +PEA++L C++ +PC GV +
Sbjct: 257 SNPIIIDMKYCPNKICTASGASKVTVKDVSFKNVTGTSASPEAVSLLCSDKIPCTGVTMD 436
Query: 361 NVDIKYNGSGNKTMAVCKNAIGKSIGLAKELACI*TN 471
NV ++Y+G NKTMAVC+NA G + G KELAC *T+
Sbjct: 437 NVKVEYSGKNNKTMAVCQNAKGSATGCLKELACF*TS 547
Score = 132 bits (282), Expect = 7e-030
Identities = 68/125 (54%), Positives = 83/125 (66%)
Frame = -3 / -2
Query: 458 HASSFAKPMDLPMAFLQTAMVLLPDPLYLMSTLTSCTPWHGRLLAQLSVMASGVLEVPWM 279
HASS +P+ LP+AF TAMVLL PLY TL+ TP G L Q + ASG+ EVP
Sbjct: 534 HASSLRQPVALPLAFWHTAMVLLFLPLYSTLTLSMVTPVQGILSEQSRLTASGLAEVPVT 355
Query: 278 FLKTTSLTATLEAPDLTQMLLGQYFWSMMMG*ETLSMVMPSYRNLLALSDDLESSYDLMR 99
FLK TSLT TLEAP Q+LLGQYF SM+MG + S++M S L A+S + SSY L+R
Sbjct: 354 FLKETSLTVTLEAPLAVQILLGQYFMSMIMGFDESSILMFS*WILEAVSTEAASSYALIR 175
Query: 98 RPFVV 84
RP +V
Sbjct: 174 RPLLV 160
>gb|CF485728.1|CF485728 POL1_33_F06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_33_F06_A002 3', mRNA sequence
Length = 609
Score = 237 bits (512), Expect = 1e-061
Identities = 97/157 (61%), Positives = 119/157 (75%)
Frame = +1 / +3
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GIS+GSLGRYKDEKDV D+ V CT+ T+NGLRIK+YED+ S L ASK YE I M++
Sbjct: 24 GISIGSLGRYKDEKDVTDINVKDCTLKKTSNGLRIKAYEDAASVLTASKIHYENIKMEDS 203
Query: 181 SYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLV 360
S PIIID KYCPN IC SGASKV V DV FKN+ GTS +PEA++L C++ +PC GV +
Sbjct: 204 SNPIIIDMKYCPNKICTASGASKVTVKDVSFKNVTGTSASPEAVSLLCSDKIPCTGVTMD 383
Query: 361 NVDIKYNGSGNKTMAVCKNAIGKSIGLAKELACI*TN 471
NV ++Y+G NKTMAVC+NA G + G KELAC *T+
Sbjct: 384 NVKVEYSGKNNKTMAVCQNAKGSATGCLKELACF*TS 494
Score = 132 bits (282), Expect = 7e-030
Identities = 68/125 (54%), Positives = 83/125 (66%)
Frame = -3 / -3
Query: 458 HASSFAKPMDLPMAFLQTAMVLLPDPLYLMSTLTSCTPWHGRLLAQLSVMASGVLEVPWM 279
HASS +P+ LP+AF TAMVLL PLY TL+ TP G L Q + ASG+ EVP
Sbjct: 481 HASSLRQPVALPLAFWHTAMVLLFLPLYSTLTLSMVTPVQGILSEQSRLTASGLAEVPVT 302
Query: 278 FLKTTSLTATLEAPDLTQMLLGQYFWSMMMG*ETLSMVMPSYRNLLALSDDLESSYDLMR 99
FLK TSLT TLEAP Q+LLGQYF SM+MG + S++M S L A+S + SSY L+R
Sbjct: 301 FLKETSLTVTLEAPLAVQILLGQYFMSMIMGFDESSILMFS*WILEAVSTEAASSYALIR 122
Query: 98 RPFVV 84
RP +V
Sbjct: 121 RPLLV 107
>gb|CF486033.1|CF486033 POL1_35_F09.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_35_F09_A002 3', mRNA sequence
Length = 618
Score = 237 bits (512), Expect = 1e-061
Identities = 97/157 (61%), Positives = 119/157 (75%)
Frame = +1 / +1
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GIS+GSLGRYKDEKDV D+ V CT+ T+NGLRIK+YED+ S L ASK YE I M++
Sbjct: 52 GISIGSLGRYKDEKDVTDINVKDCTLKKTSNGLRIKAYEDAASVLTASKIHYENIKMEDS 231
Query: 181 SYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLV 360
S PIIID KYCPN IC SGASKV V DV FKN+ GTS +PEA++L C++ +PC GV +
Sbjct: 232 SNPIIIDMKYCPNKICTASGASKVTVKDVSFKNVTGTSASPEAVSLLCSDKIPCTGVTMD 411
Query: 361 NVDIKYNGSGNKTMAVCKNAIGKSIGLAKELACI*TN 471
NV ++Y+G NKTMAVC+NA G + G KELAC *T+
Sbjct: 412 NVKVEYSGKNNKTMAVCQNAKGSATGCLKELACF*TS 522
Score = 132 bits (282), Expect = 7e-030
Identities = 68/125 (54%), Positives = 83/125 (66%)
Frame = -3 / -2
Query: 458 HASSFAKPMDLPMAFLQTAMVLLPDPLYLMSTLTSCTPWHGRLLAQLSVMASGVLEVPWM 279
HASS +P+ LP+AF TAMVLL PLY TL+ TP G L Q + ASG+ EVP
Sbjct: 509 HASSLRQPVALPLAFWHTAMVLLFLPLYSTLTLSMVTPVQGILSEQSRLTASGLAEVPVT 330
Query: 278 FLKTTSLTATLEAPDLTQMLLGQYFWSMMMG*ETLSMVMPSYRNLLALSDDLESSYDLMR 99
FLK TSLT TLEAP Q+LLGQYF SM+MG + S++M S L A+S + SSY L+R
Sbjct: 329 FLKETSLTVTLEAPLAVQILLGQYFMSMIMGFDESSILMFS*WILEAVSTEAASSYALIR 150
Query: 98 RPFVV 84
RP +V
Sbjct: 149 RPLLV 135
>gb|CF487334.1|CF487334 POL1_43_D12.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_43_D12_A002 3', mRNA sequence
Length = 637
Score = 237 bits (512), Expect = 1e-061
Identities = 97/157 (61%), Positives = 119/157 (75%)
Frame = +1 / +1
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GIS+GSLGRYKDEKDV D+ V CT+ T+NGLRIK+YED+ S L ASK YE I M++
Sbjct: 64 GISIGSLGRYKDEKDVTDINVKDCTLKKTSNGLRIKAYEDAASVLTASKIHYENIKMEDS 243
Query: 181 SYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLV 360
S PIIID KYCPN IC SGASKV V DV FKN+ GTS +PEA++L C++ +PC GV +
Sbjct: 244 SNPIIIDMKYCPNKICTASGASKVTVKDVSFKNVTGTSASPEAVSLLCSDKIPCTGVTMD 423
Query: 361 NVDIKYNGSGNKTMAVCKNAIGKSIGLAKELACI*TN 471
NV ++Y+G NKTMAVC+NA G + G KELAC *T+
Sbjct: 424 NVKVEYSGKNNKTMAVCQNAKGSATGCLKELACF*TS 534
Score = 132 bits (282), Expect = 7e-030
Identities = 68/125 (54%), Positives = 83/125 (66%)
Frame = -3 / -3
Query: 458 HASSFAKPMDLPMAFLQTAMVLLPDPLYLMSTLTSCTPWHGRLLAQLSVMASGVLEVPWM 279
HASS +P+ LP+AF TAMVLL PLY TL+ TP G L Q + ASG+ EVP
Sbjct: 521 HASSLRQPVALPLAFWHTAMVLLFLPLYSTLTLSMVTPVQGILSEQSRLTASGLAEVPVT 342
Query: 278 FLKTTSLTATLEAPDLTQMLLGQYFWSMMMG*ETLSMVMPSYRNLLALSDDLESSYDLMR 99
FLK TSLT TLEAP Q+LLGQYF SM+MG + S++M S L A+S + SSY L+R
Sbjct: 341 FLKETSLTVTLEAPLAVQILLGQYFMSMIMGFDESSILMFS*WILEAVSTEAASSYALIR 162
Query: 98 RPFVV 84
RP +V
Sbjct: 161 RPLLV 147
>gb|CF489185.1|CF489185 POL1_55_F02.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_55_F02_A002 3', mRNA sequence
Length = 619
Score = 237 bits (512), Expect = 1e-061
Identities = 97/157 (61%), Positives = 119/157 (75%)
Frame = +1 / +3
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GIS+GSLGRYKDEKDV D+ V CT+ T+NGLRIK+YED+ S L ASK YE I M++
Sbjct: 60 GISIGSLGRYKDEKDVTDINVKDCTLKKTSNGLRIKAYEDAASVLTASKIHYENIKMEDS 239
Query: 181 SYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLV 360
S PIIID KYCPN IC SGASKV V DV FKN+ GTS +PEA++L C++ +PC GV +
Sbjct: 240 SNPIIIDMKYCPNKICTASGASKVTVKDVSFKNVTGTSASPEAVSLLCSDKIPCTGVTMD 419
Query: 361 NVDIKYNGSGNKTMAVCKNAIGKSIGLAKELACI*TN 471
NV ++Y+G NKTMAVC+NA G + G KELAC *T+
Sbjct: 420 NVKVEYSGKNNKTMAVCQNAKGSATGCLKELACF*TS 530
Score = 132 bits (282), Expect = 7e-030
Identities = 68/125 (54%), Positives = 83/125 (66%)
Frame = -3 / -1
Query: 458 HASSFAKPMDLPMAFLQTAMVLLPDPLYLMSTLTSCTPWHGRLLAQLSVMASGVLEVPWM 279
HASS +P+ LP+AF TAMVLL PLY TL+ TP G L Q + ASG+ EVP
Sbjct: 517 HASSLRQPVALPLAFWHTAMVLLFLPLYSTLTLSMVTPVQGILSEQSRLTASGLAEVPVT 338
Query: 278 FLKTTSLTATLEAPDLTQMLLGQYFWSMMMG*ETLSMVMPSYRNLLALSDDLESSYDLMR 99
FLK TSLT TLEAP Q+LLGQYF SM+MG + S++M S L A+S + SSY L+R
Sbjct: 337 FLKETSLTVTLEAPLAVQILLGQYFMSMIMGFDESSILMFS*WILEAVSTEAASSYALIR 158
Query: 98 RPFVV 84
RP +V
Sbjct: 157 RPLLV 143
>gb|CF489342.1|CF489342 POL1_57_B05.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_57_B05_A002 3', mRNA sequence
Length = 670
Score = 237 bits (512), Expect = 1e-061
Identities = 97/157 (61%), Positives = 119/157 (75%)
Frame = +1 / +3
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GIS+GSLGRYKDEKDV D+ V CT+ T+NGLRIK+YED+ S L ASK YE I M++
Sbjct: 21 GISIGSLGRYKDEKDVTDINVKDCTLKKTSNGLRIKAYEDAASVLTASKIHYENIKMEDS 200
Query: 181 SYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLV 360
S PIIID KYCPN IC SGASKV V DV FKN+ GTS +PEA++L C++ +PC GV +
Sbjct: 201 SNPIIIDMKYCPNKICTASGASKVTVKDVSFKNVTGTSASPEAVSLLCSDKIPCTGVTMD 380
Query: 361 NVDIKYNGSGNKTMAVCKNAIGKSIGLAKELACI*TN 471
NV ++Y+G NKTMAVC+NA G + G KELAC *T+
Sbjct: 381 NVKVEYSGKNNKTMAVCQNAKGSATGCLKELACF*TS 491
Score = 132 bits (282), Expect = 7e-030
Identities = 68/125 (54%), Positives = 83/125 (66%)
Frame = -3 / -1
Query: 458 HASSFAKPMDLPMAFLQTAMVLLPDPLYLMSTLTSCTPWHGRLLAQLSVMASGVLEVPWM 279
HASS +P+ LP+AF TAMVLL PLY TL+ TP G L Q + ASG+ EVP
Sbjct: 478 HASSLRQPVALPLAFWHTAMVLLFLPLYSTLTLSMVTPVQGILSEQSRLTASGLAEVPVT 299
Query: 278 FLKTTSLTATLEAPDLTQMLLGQYFWSMMMG*ETLSMVMPSYRNLLALSDDLESSYDLMR 99
FLK TSLT TLEAP Q+LLGQYF SM+MG + S++M S L A+S + SSY L+R
Sbjct: 298 FLKETSLTVTLEAPLAVQILLGQYFMSMIMGFDESSILMFS*WILEAVSTEAASSYALIR 119
Query: 98 RPFVV 84
RP +V
Sbjct: 118 RPLLV 104
>gb|CL165002.1|CL165002 104_359_10808294_114_31816_278 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10808294, DNA
sequence
Length = 787
Score = 232 bits (502), Expect = 3e-060
Identities = 95/155 (61%), Positives = 117/155 (75%)
Frame = +1 / -2
Query: 7 SVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNVSY 186
S+GSLGRYKDEKDV D+ V CT+ T+NGLRIK+YED+ S L ASK YE I M++ S
Sbjct: 786 SIGSLGRYKDEKDVTDINVKDCTLKKTSNGLRIKAYEDAASVLTASKIHYENIKMEDSSN 607
Query: 187 PIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNV 366
PIIID KYCPN IC SGASKV V DV FKN+ GTS +PEA++L C++ +PC GV + NV
Sbjct: 606 PIIIDMKYCPNKICTASGASKVTVKDVSFKNVTGTSASPEAVSLLCSDKIPCTGVTMDNV 427
Query: 367 DIKYNGSGNKTMAVCKNAIGKSIGLAKELACI*TN 471
++Y+G NKTMAVC+NA G + G KELAC *T+
Sbjct: 426 KVEYSGKNNKTMAVCQNAKGSATGCLKELACF*TS 322
Score = 132 bits (282), Expect = 7e-030
Identities = 68/125 (54%), Positives = 83/125 (66%)
Frame = -3 / +2
Query: 458 HASSFAKPMDLPMAFLQTAMVLLPDPLYLMSTLTSCTPWHGRLLAQLSVMASGVLEVPWM 279
HASS +P+ LP+AF TAMVLL PLY TL+ TP G L Q + ASG+ EVP
Sbjct: 335 HASSLRQPVALPLAFWHTAMVLLFLPLYSTLTLSMVTPVQGILSEQSRLTASGLAEVPVT 514
Query: 278 FLKTTSLTATLEAPDLTQMLLGQYFWSMMMG*ETLSMVMPSYRNLLALSDDLESSYDLMR 99
FLK TSLT TLEAP Q+LLGQYF SM+MG + S++M S L A+S + SSY L+R
Sbjct: 515 FLKETSLTVTLEAPLAVQILLGQYFMSMIMGFDESSILMFS*WILEAVSTEAASSYALIR 694
Query: 98 RPFVV 84
RP +V
Sbjct: 695 RPLLV 709
>gb|CW241738.1|CW241738 104_701_11218937_148_37556_079 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11218937, DNA
sequence
Length = 656
Score = 220 bits (475), Expect = 2e-056
Identities = 89/144 (61%), Positives = 110/144 (76%)
Frame = +1 / +1
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GIS+GSLGRYKDEKDV D+ V CT+ T+NGLRIK+YED+ S L ASK YE I M++
Sbjct: 223 GISIGSLGRYKDEKDVTDINVKDCTLKKTSNGLRIKAYEDAASVLTASKIHYENIKMEDS 402
Query: 181 SYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLV 360
S PIIID KYCPN IC SGASKV V DV FKN+ GTS +PEA++L C++ +PC GV +
Sbjct: 403 SNPIIIDMKYCPNKICTASGASKVTVKDVSFKNVTGTSASPEAVSLLCSDKIPCTGVTMD 582
Query: 361 NVDIKYNGSGNKTMAVCKNAIGKS 432
NV ++Y+G NKTMAVC+NA G +
Sbjct: 583 NVKVEYSGKNNKTMAVCQNAKGSA 654
Score = 120 bits (256), Expect = 3e-026
Identities = 63/115 (54%), Positives = 76/115 (66%)
Frame = -3 / -1
Query: 428 LPMAFLQTAMVLLPDPLYLMSTLTSCTPWHGRLLAQLSVMASGVLEVPWMFLKTTSLTAT 249
LP+AF TAMVLL PLY TL+ TP G L Q + ASG+ EVP FLK TSLT T
Sbjct: 650 LPLAFWHTAMVLLFLPLYSTLTLSMVTPVQGILSEQSRLTASGLAEVPVTFLKETSLTVT 471
Query: 248 LEAPDLTQMLLGQYFWSMMMG*ETLSMVMPSYRNLLALSDDLESSYDLMRRPFVV 84
LEAP Q+LLGQYF SM+MG + S++M S L A+S + SSY L+RRP +V
Sbjct: 470 LEAPLAVQILLGQYFMSMIMGFDESSILMFS*WILEAVSTEAASSYALIRRPLLV 306
>gb|CF480188.1|CF480188 POL1_64_G01.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_64_G01_A002 3', mRNA sequence
Length = 709
Score = 211 bits (455), Expect = 1e-053
Identities = 87/149 (58%), Positives = 109/149 (73%)
Frame = +1 / +2
Query: 25 RYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNVSYPIIIDQ 204
R DEKDV D+ V CT+ T+NGLRIK+YED+ S L ASK YE I M++ S PIIID
Sbjct: 47 READEKDVTDINVKDCTLKKTSNGLRIKAYEDAASVLTASKIHYENIKMEDSSNPIIIDM 226
Query: 205 KYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNG 384
KYCPN IC SGASKV V DV FK++ GTS +PEA++L C++ +PC GV + NV ++Y+G
Sbjct: 227 KYCPNKICTASGASKVTVKDVSFKDVTGTSASPEAVSLLCSDKIPCTGVTMDNVKVEYSG 406
Query: 385 SGNKTMAVCKNAIGKSIGLAKELACI*TN 471
NKTMAVC+NA G + G KELAC *T+
Sbjct: 407 KNNKTMAVCQNAKGSATGCLKELACF*TS 493
Score = 128 bits (274), Expect = 9e-029
Identities = 67/125 (53%), Positives = 82/125 (65%)
Frame = -3 / -2
Query: 458 HASSFAKPMDLPMAFLQTAMVLLPDPLYLMSTLTSCTPWHGRLLAQLSVMASGVLEVPWM 279
HASS +P+ LP+AF TAMVLL PLY TL+ TP G L Q + ASG+ EVP
Sbjct: 480 HASSLRQPVALPLAFWHTAMVLLFLPLYSTLTLSMVTPVQGILSEQSRLTASGLAEVPVT 301
Query: 278 FLKTTSLTATLEAPDLTQMLLGQYFWSMMMG*ETLSMVMPSYRNLLALSDDLESSYDLMR 99
LK TSLT TLEAP Q+LLGQYF SM+MG + S++M S L A+S + SSY L+R
Sbjct: 300 SLKETSLTVTLEAPLAVQILLGQYFMSMIMGFDESSILMFS*WILEAVSTEAASSYALIR 121
Query: 98 RPFVV 84
RP +V
Sbjct: 120 RPLLV 106
>gb|BG322873.1|BG322873 EM1_15_B11.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 580
Score = 199 bits (430), Expect = 3e-050
Identities = 79/131 (60%), Positives = 98/131 (74%)
Frame = +1 / +1
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLGRYKDEKDV D+ V CT+ T+NG+RIKSYED+ + ASK YE I MD+V
Sbjct: 187 GISVGSLGRYKDEKDVTDINVKDCTLKKTSNGVRIKSYEDAACVITASKLHYENIAMDDV 366
Query: 181 SYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLV 360
+ PIIID KYCPN IC G SKV V DV FKNI GTS+TPEA++L C++ +PC GV +
Sbjct: 367 ANPIIIDMKYCPNKICTAKGDSKVTVKDVTFKNITGTSSTPEAVSLLCSDKIPCSGVTMD 546
Query: 361 NVDIKYNGSGN 393
N+ ++Y G+ N
Sbjct: 547 NIKVEYKGTNN 579
>gb|CL149387.1|CL149387 104_330_10777794_114_31353_114 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10777794, DNA
sequence
Length = 711
Score = 115 bits (245), Expect(2) = 1e-049
Identities = 46/76 (60%), Positives = 56/76 (73%)
Frame = +1 / -2
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GIS+G LGRYKDEKDV DV V C + TTNG+RIKSYED++S L AS +E I M+ V
Sbjct: 536 GISIGCLGRYKDEKDVTDVTVRDCVLKKTTNGVRIKSYEDAESVLTASHLTFENIRMEEV 357
Query: 181 SYPIIIDQKYCPNNIC 228
+ PIIIDQ +CP +C
Sbjct: 356 ANPIIIDQYFCPEKVC 309
Score = 103 bits (219), Expect(2) = 1e-049
Identities = 41/77 (53%), Positives = 56/77 (72%)
Frame = +1 / -2
Query: 232 KSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNGSGNKTMAVC 411
KS +S V V DV F+NI GTS+TP+AI+L C+ + PC GV L++V+++Y G NKTMAVC
Sbjct: 299 KSDSSHVIVKDVTFRNITGTSSTPQAISLLCSQSQPCSGVSLIDVNVEYAGKNNKTMAVC 120
Query: 412 KNAIGKSIGLAKELACI 462
NA G + G + LAC+
Sbjct: 119 SNAKGTAKGSVEALACL 69
>gb|CW406843.1|CW406843 fsbb001f100a22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f100a22, DNA
sequence
Length = 532
Score = 115 bits (245), Expect(2) = 1e-049
Identities = 46/76 (60%), Positives = 56/76 (73%)
Frame = +1 / -2
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GIS+G LGRYKDEKDV DV V C + TTNG+RIKSYED++S L AS +E I M+ V
Sbjct: 468 GISIGCLGRYKDEKDVTDVTVRDCVLKKTTNGVRIKSYEDAESVLTASHLTFENIRMEEV 289
Query: 181 SYPIIIDQKYCPNNIC 228
+ PIIIDQ +CP +C
Sbjct: 288 ANPIIIDQYFCPEKVC 241
Score = 103 bits (219), Expect(2) = 1e-049
Identities = 41/77 (53%), Positives = 56/77 (72%)
Frame = +1 / -2
Query: 232 KSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNGSGNKTMAVC 411
KS +S V V DV F+NI GTS+TP+AI+L C+ + PC GV L++V+++Y G NKTMAVC
Sbjct: 231 KSDSSHVIVKDVTFRNITGTSSTPQAISLLCSQSQPCSGVSLIDVNVEYAGKNNKTMAVC 52
Query: 412 KNAIGKSIGLAKELACI 462
NA G + G + LAC+
Sbjct: 51 SNAKGTAKGSVEALACL 1
>gb|CL197000.1|CL197000 104_423_10943444_116_32330_070 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943444, DNA
sequence
Length = 704
Score = 193 bits (417), Expect = 2e-048
Identities = 77/132 (58%), Positives = 97/132 (73%)
Frame = +1 / -2
Query: 70 CTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNVSYPIIIDQKYCPNNICVKSGASK 249
CT+ T+NG+RIKSYED+ + ASK YE I MD+V+ PIIID KYCPN IC G SK
Sbjct: 697 CTLRKTSNGVRIKSYEDAACVITASKLHYENIAMDDVANPIIIDMKYCPNKICTAKGDSK 518
Query: 250 VAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNGSGNKTMAVCKNAIGK 429
V V DV FKNI GTS+TPEA++L C++ +PC GV + N+ ++Y G+ NKTMAVC+NA G
Sbjct: 517 VTVKDVTFKNITGTSSTPEAVSLLCSDKIPCSGVTMDNIKVEYKGTNNKTMAVCQNAKGS 338
Query: 430 SIGLAKELACI* 465
+ G KELAC *
Sbjct: 337 ATGCLKELACF* 302
Score = 127 bits (271), Expect = 2e-028
Identities = 68/130 (52%), Positives = 81/130 (62%)
Frame = -3 / +3
Query: 473 QLVQMHASSFAKPMDLPMAFLQTAMVLLPDPLYLMSTLTSCTPWHGRLLAQLSVMASGVL 294
++ Q ASS +P+ LP+AF TAMVLL PLY L+ TP G L Q + ASGV
Sbjct: 294 RIAQKQASSLRQPVALPLAF*HTAMVLLLVPLYSTLMLSMVTPLQGILSEQSRLTASGVD 473
Query: 293 EVPWMFLKTTSLTATLEAPDLTQMLLGQYFWSMMMG*ETLSMVMPSYRNLLALSDDLESS 114
EVP MFL TSLT TLE+P Q+LLGQYF SMMMG T SM M S +L A+ SS
Sbjct: 474 EVPVMFLNVTSLTVTLESPLAVQILLGQYFMSMMMGLATSSMAMFS*WSLEAVITHAASS 653
Query: 113 YDLMRRPFVV 84
DL+R P +V
Sbjct: 654 *DLIRTPLLV 683
>gb|CF486155.1|CF486155 POL1_36_C04.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_36_C04_A002 3', mRNA sequence
Length = 591
Score = 193 bits (416), Expect = 2e-048
Identities = 79/137 (57%), Positives = 101/137 (73%)
Frame = +1 / +1
Query: 61 VTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNVSYPIIIDQKYCPNNICVKSG 240
V CT+ T+NGLRIK+YED+ S L ASK +E I M++ S PIIID +YCPN IC SG
Sbjct: 1 VKDCTLKKTSNGLRIKAYEDAASVLTASKIHHENIKMEDSSNPIIIDMRYCPNKICTASG 180
Query: 241 ASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNGSGNKTMAVCKNA 420
ASKV V DV FKN+ GTS +PEA++L C++ +PC GV + NV ++Y+G NKTMAVC+NA
Sbjct: 181 ASKVTVKDVSFKNVTGTSASPEAVSLLCSDKIPCTGVTMDNVKVEYSGKNNKTMAVCQNA 360
Query: 421 IGKSIGLAKELACI*TN 471
G + G KELAC *T+
Sbjct: 361 KGSATGCLKELACF*TS 411
Score = 132 bits (282), Expect = 7e-030
Identities = 67/125 (53%), Positives = 83/125 (66%)
Frame = -3 / -2
Query: 458 HASSFAKPMDLPMAFLQTAMVLLPDPLYLMSTLTSCTPWHGRLLAQLSVMASGVLEVPWM 279
HASS +P+ LP+AF TAMVLL PLY TL+ TP G L Q + ASG+ EVP
Sbjct: 398 HASSLRQPVALPLAFWHTAMVLLFLPLYSTLTLSMVTPVQGILSEQSRLTASGLAEVPVT 219
Query: 278 FLKTTSLTATLEAPDLTQMLLGQYFWSMMMG*ETLSMVMPSYRNLLALSDDLESSYDLMR 99
FLK TSLT TLEAP Q+LLGQY SM+MG + S++M S+ L A+S + SSY L+R
Sbjct: 218 FLKETSLTVTLEAPLAVQILLGQYLMSMIMGFDESSILMFSWWILEAVSTEAASSYALIR 39
Query: 98 RPFVV 84
RP +V
Sbjct: 38 RPLLV 24
>gb|CF480656.1|CF480656 POL1_67_D01.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_67_D01_A002 3', mRNA sequence
Length = 699
Score = 127 bits (271), Expect(3) = 5e-048
Identities = 51/89 (57%), Positives = 64/89 (71%)
Frame = +1 / +1
Query: 139 ASKFLYEGITMDNVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITL 318
ASK YE I M++ S PIIID KYCPN IC SGASKV V DV FKN+ GTS +PEA++L
Sbjct: 145 ASKIHYENIKMEDSSNPIIIDMKYCPNKICTASGASKVTVKDVSFKNVTGTSASPEAVSL 324
Query: 319 NCANNLPCQGVQLVNVDIKYNGSGNKTMA 405
C++ +PC GV + NV ++Y+G NK A
Sbjct: 325 LCSDKIPCTGVTMDNVKVEYSGKNNKGSA 411
Score = 78.0 bits (164), Expect(3) = 5e-048
Identities = 31/45 (68%), Positives = 37/45 (82%)
Frame = +1 / +3
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSL 135
GIS+GSLGRYKDEKDV D+ V CT+ T+NGLRIK+YED+ S L
Sbjct: 6 GISIGSLGRYKDEKDVTDINVKDCTLKKTSNGLRIKAYEDAASVL 140
Score = 25.8 bits (50), Expect(3) = 5e-048
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1 / +1
Query: 412 KNAIGKSIGLAKELACI*TN 471
KN G + G KELAC *T+
Sbjct: 391 KNNKGSATGCLKELACF*TS 450
>gb|CL187602.1|CL187602 104_403_10901000_116_32464_026 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10901000, DNA
sequence
Length = 712
Score = 115 bits (245), Expect(2) = 2e-047
Identities = 46/76 (60%), Positives = 56/76 (73%)
Frame = +1 / -3
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GIS+G LGRYKDEKDV DV V C + TTNG+RIKSYED++S L AS +E I M+ V
Sbjct: 446 GISIGCLGRYKDEKDVTDVTVRDCVLKKTTNGVRIKSYEDAESVLTASHLTFENIRMEEV 267
Query: 181 SYPIIIDQKYCPNNIC 228
+ PIIIDQ +CP +C
Sbjct: 266 ANPIIIDQYFCPEKVC 219
Score = 95.5 bits (202), Expect(2) = 2e-047
Identities = 38/69 (55%), Positives = 51/69 (73%)
Frame = +1 / -3
Query: 232 KSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNGSGNKTMAVC 411
KS +S V V DV F+NI GTS+TP+AI+L C+ + PC GV L++V+++Y G NKTMAVC
Sbjct: 209 KSDSSHVIVKDVTFRNITGTSSTPQAISLLCSQSQPCSGVSLIDVNVEYAGKNNKTMAVC 30
Query: 412 KNAIGKSIG 438
NA G + G
Sbjct: 29 SNAKGTAKG 3
>gb|BG239833.1|BG239833 OV1_29_F03.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 479
Score = 190 bits (409), Expect = 2e-047
Identities = 78/129 (60%), Positives = 97/129 (75%)
Frame = +1 / +2
Query: 85 TTNGLRIKSYEDSKSSLKASKFLYEGITMDNVSYPIIIDQKYCPNNICVKSGASKVAVND 264
T+NGLRIK+YED+ S L ASK YE I M++ S PIIID KYCPN IC SGASKV V D
Sbjct: 14 TSNGLRIKAYEDAASVLTASKIHYENIKMEDSSNPIIIDMKYCPNKICTASGASKVTVKD 193
Query: 265 VVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNGSGNKTMAVCKNAIGKSIGLA 444
V FKN+ GTS +PEA++L C++ +PC GV + NV ++Y+G NKTMAVC+NA G + G
Sbjct: 194 VSFKNVTGTSASPEAVSLLCSDKIPCTGVTMDNVKVEYSGKNNKTMAVCQNAKGSATGCL 373
Query: 445 KELACI*TN 471
KELAC *T+
Sbjct: 374 KELACF*TS 400
Score = 132 bits (282), Expect = 7e-030
Identities = 68/125 (54%), Positives = 83/125 (66%)
Frame = -3 / -3
Query: 458 HASSFAKPMDLPMAFLQTAMVLLPDPLYLMSTLTSCTPWHGRLLAQLSVMASGVLEVPWM 279
HASS +P+ LP+AF TAMVLL PLY TL+ TP G L Q + ASG+ EVP
Sbjct: 387 HASSLRQPVALPLAFWHTAMVLLFLPLYSTLTLSMVTPVQGILSEQSRLTASGLAEVPVT 208
Query: 278 FLKTTSLTATLEAPDLTQMLLGQYFWSMMMG*ETLSMVMPSYRNLLALSDDLESSYDLMR 99
FLK TSLT TLEAP Q+LLGQYF SM+MG + S++M S L A+S + SSY L+R
Sbjct: 207 FLKETSLTVTLEAPLAVQILLGQYFMSMIMGFDESSILMFS*WILEAVSTEAASSYALIR 28
Query: 98 RPFVV 84
RP +V
Sbjct: 27 RPLLV 13
>gb|BG240402.1|BG240402 OV1_29_F03.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 445
Score = 190 bits (409), Expect = 2e-047
Identities = 78/129 (60%), Positives = 97/129 (75%)
Frame = +1 / +2
Query: 85 TTNGLRIKSYEDSKSSLKASKFLYEGITMDNVSYPIIIDQKYCPNNICVKSGASKVAVND 264
T+NGLRIK+YED+ S L ASK YE I M++ S PIIID KYCPN IC SGASKV V D
Sbjct: 14 TSNGLRIKAYEDAASVLTASKIHYENIKMEDSSNPIIIDMKYCPNKICTASGASKVTVKD 193
Query: 265 VVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNGSGNKTMAVCKNAIGKSIGLA 444
V FKN+ GTS +PEA++L C++ +PC GV + NV ++Y+G NKTMAVC+NA G + G
Sbjct: 194 VSFKNVTGTSASPEAVSLLCSDKIPCTGVTMDNVKVEYSGKNNKTMAVCQNAKGSATGCL 373
Query: 445 KELACI*TN 471
KELAC *T+
Sbjct: 374 KELACF*TS 400
Score = 132 bits (282), Expect = 7e-030
Identities = 68/125 (54%), Positives = 83/125 (66%)
Frame = -3 / -2
Query: 458 HASSFAKPMDLPMAFLQTAMVLLPDPLYLMSTLTSCTPWHGRLLAQLSVMASGVLEVPWM 279
HASS +P+ LP+AF TAMVLL PLY TL+ TP G L Q + ASG+ EVP
Sbjct: 387 HASSLRQPVALPLAFWHTAMVLLFLPLYSTLTLSMVTPVQGILSEQSRLTASGLAEVPVT 208
Query: 278 FLKTTSLTATLEAPDLTQMLLGQYFWSMMMG*ETLSMVMPSYRNLLALSDDLESSYDLMR 99
FLK TSLT TLEAP Q+LLGQYF SM+MG + S++M S L A+S + SSY L+R
Sbjct: 207 FLKETSLTVTLEAPLAVQILLGQYFMSMIMGFDESSILMFS*WILEAVSTEAASSYALIR 28
Query: 98 RPFVV 84
RP +V
Sbjct: 27 RPLLV 13
>gb|BH246023.1|BH246023 pSB1633.1 S. bicolor BTx623 PstI-digested total genomic DNA library
Sorghum bicolor genomic clone pSB1633 similar to PG gene
for polygalacturonase (X66422), DNA sequence
Length = 479
Score = 181 bits (390), Expect = 9e-045
Identities = 73/114 (64%), Positives = 87/114 (76%)
Frame = +1 / -1
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLGRYKDEKDV D+ V CT+ T+NG+RIKSYED+ + ASK YE I MD+V
Sbjct: 344 GISVGSLGRYKDEKDVTDINVKDCTLKKTSNGVRIKSYEDAACVITASKLHYENIAMDDV 165
Query: 181 SYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPC 342
+ PIIID KYCPN IC G SKV V DV FKNI GTS+TPEA++L C++ +PC
Sbjct: 164 ANPIIIDMKYCPNKICTAKGDSKVTVKDVTFKNITGTSSTPEAVSLLCSDKIPC 3
>gb|CL196999.1|CL196999 104_423_10943444_114_32326_070 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943444, DNA
sequence
Length = 699
Score = 175 bits (376), Expect = 7e-043
Identities = 72/113 (63%), Positives = 84/113 (74%)
Frame = +1 / +1
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLGRYKDEKDV D+ V CT+ T+NG+RIKSYED+ + ASK YE I MD+V
Sbjct: 343 GISVGSLGRYKDEKDVTDINVKDCTLKKTSNGVRIKSYEDAACVITASKLHYENIAMDDV 522
Query: 181 SYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLP 339
+ PIIID KYCPN IC G SKV V DV FKNI GTS+TPEA++L C+ P
Sbjct: 523 ANPIIIDMKYCPNKICTAKGDSKVTVKDVTFKNITGTSSTPEAVSLLCSEKSP 681
>gb|CW346335.1|CW346335 104_849_11488970_116_36220_003 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11488970, DNA
sequence
Length = 658
Score = 174 bits (375), Expect = 1e-042
Identities = 72/83 (86%), Positives = 78/83 (93%)
Frame = +1 / +1
Query: 223 ICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNGSGNKTM 402
ICV+SGASKVAV DVVFKNIHGTSNTPEAITLNCA+NLPCQGVQL NVDIKYN S NKTM
Sbjct: 1 ICVRSGASKVAVTDVVFKNIHGTSNTPEAITLNCADNLPCQGVQLHNVDIKYNKSNNKTM 180
Query: 403 AVCKNAIGKSIGLAKELACI*TN 471
AVCKNA+GKS GL+KELACI*++
Sbjct: 181 AVCKNAVGKSFGLSKELACI*SS 249
Score = 166 bits (356), Expect = 4e-040
Identities = 71/81 (87%), Positives = 74/81 (91%)
Frame = -3 / -3
Query: 467 VQMHASSFAKPMDLPMAFLQTAMVLLPDPLYLMSTLTSCTPWHGRLLAQLSVMASGVLEV 288
+QMHASSF KP DLP AFLQTAMVLL D LYLMSTL SCTPWHGRL AQLSVMASGVLEV
Sbjct: 245 LQMHASSFDKPKDLPTAFLQTAMVLLLDLLYLMSTLWSCTPWHGRLSAQLSVMASGVLEV 66
Query: 287 PWMFLKTTSLTATLEAPDLTQ 225
PWMFLKTTS+TATL+APDLTQ
Sbjct: 65 PWMFLKTTSVTATLDAPDLTQ 3
Score = 127 bits (273), Expect = 1e-028
Identities = 55/65 (84%), Positives = 60/65 (92%)
Frame = -2 / -2
Query: 465 SNARQLLCQADGLADGILADGHGLVAGSIVLDVDVDELHALAWQVVGAVERDGLRRVGGA 286
S+AR+LL QA+GLADG+LADGHGLV G +VLDVDV ELHALAWQVVGAVERDGL RVGGA
Sbjct: 243 SDARELL*QAEGLADGVLADGHGLVVGLVVLDVDVVELHALAWQVVGAVERDGLGRVGGA 64
Query: 285 VDVLE 271
VDVLE
Sbjct: 63 VDVLE 49
Score = 126 bits (269), Expect = 4e-028
Identities = 52/63 (82%), Positives = 55/63 (87%)
Frame = +3 / +3
Query: 276 EHPRHLQHAGGHHAQLRQQPAMPGRAARQRRHQVQWIRQQDHGRLQECHRQVHRLGKGAG 455
EHPRHLQHA GHHAQLR+QPAMPGRAA QRRHQVQ ++QQDHGRLQE RQV RL KGA
Sbjct: 54 EHPRHLQHARGHHAQLRRQPAMPGRAAPQRRHQVQQVQQQDHGRLQERRRQVLRLVKGAR 233
Query: 456 VHL 464
VHL
Sbjct: 234 VHL 242
>gb|CW270778.1|CW270778 104_742_11402626_148_35337_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11402626, DNA
sequence
Length = 671
Score = 172 bits (370), Expect = 5e-042
Identities = 71/108 (65%), Positives = 82/108 (75%)
Frame = +1 / +1
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLGRYKDEKDV D+ V CT+ T+NG+RIKSYED+ + ASK YE I MD+V
Sbjct: 346 GISVGSLGRYKDEKDVTDINVKDCTLKKTSNGVRIKSYEDAACVITASKLHYENIAMDDV 525
Query: 181 SYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNC 324
+ PIIID KYCPN IC G SKV V DV FKNI GTS+TPEA++L C
Sbjct: 526 ANPIIIDMKYCPNKICTAKGDSKVTVKDVTFKNITGTSSTPEAVSLLC 669
>gb|BG355410.1|BG355410 EM1_16_B04.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 522
Score = 171 bits (367), Expect = 1e-041
Identities = 70/112 (62%), Positives = 84/112 (75%)
Frame = +1 / +1
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLGRYKDEKDV D+ V CT+ T+NG+RIKSYED+ + ASK YE I MD+V
Sbjct: 187 GISVGSLGRYKDEKDVTDINVKDCTLKKTSNGVRIKSYEDAACVITASKLHYENIAMDDV 366
Query: 181 SYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNL 336
+ PIIID KYCPN IC G SKV V DV FKNI GTS+TP A++L C++ +
Sbjct: 367 ANPIIIDMKYCPNKICTAKGDSKVTVKDVTFKNITGTSSTPGAVSLLCSDKI 522
>gb|CW333143.1|CW333143 104_831_11481784_148_36046_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481784, DNA
sequence
Length = 660
Score = 115 bits (245), Expect(2) = 3e-041
Identities = 46/76 (60%), Positives = 56/76 (73%)
Frame = +1 / +1
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GIS+G LGRYKDEKDV DV V C + TTNG+RIKSYED++S L AS +E I M+ V
Sbjct: 253 GISIGCLGRYKDEKDVTDVTVRDCVLKKTTNGVRIKSYEDAESVLTASHLTFENIRMEEV 432
Query: 181 SYPIIIDQKYCPNNIC 228
+ PIIIDQ +CP +C
Sbjct: 433 ANPIIIDQYFCPEKVC 480
Score = 74.8 bits (157), Expect(2) = 3e-041
Identities = 29/57 (50%), Positives = 42/57 (73%)
Frame = +1 / +1
Query: 232 KSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNGSGNKTM 402
KS +S V V DV F+NI GTS+TP+AI+L C+ + PC GV L++V+++Y G +TM
Sbjct: 490 KSDSSHVIVKDVTFRNITGTSSTPQAISLLCSQSQPCSGVSLIDVNVEYAGKKQQTM 660
>gb|BG739374.1|BG739374 EM1_82_B09.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 643
Score = 103 bits (219), Expect(2) = 8e-041
Identities = 41/77 (53%), Positives = 56/77 (72%)
Frame = +1 / +2
Query: 232 KSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNGSGNKTMAVC 411
KS +S V V DV F+NI GTS+TP+AI+L C+ + PC GV L++V+++Y G NKTMAVC
Sbjct: 197 KSDSSHVIVKDVTFRNITGTSSTPQAISLLCSQSQPCSGVSLIDVNVEYAGKNNKTMAVC 376
Query: 412 KNAIGKSIGLAKELACI 462
NA G + G + LAC+
Sbjct: 377 SNAKGTAKGSVEALACL 427
Score = 85.4 bits (180), Expect(2) = 8e-041
Identities = 34/62 (54%), Positives = 43/62 (69%)
Frame = +1 / +2
Query: 43 DVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNVSYPIIIDQKYCPNN 222
DV DV V C + TTNG+RIKSYED++S L AS +E I M+ V+ PIIIDQ +CP
Sbjct: 2 DVTDVTVRDCVLKKTTNGVRIKSYEDAESVLTASHLTFENIRMEEVANPIIIDQYFCPEK 181
Query: 223 IC 228
+C
Sbjct: 182 VC 187
>gb|CW271205.1|CW271205 104_743_11402872_116_35341_060 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11402872, DNA
sequence
Length = 709
Score = 168 bits (361), Expect = 9e-041
Identities = 70/108 (64%), Positives = 82/108 (75%)
Frame = +1 / +3
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GIS+GSLGRYKDEKDV D+ V CT+ T+NGLRIK+YED+ S L ASK YE I M++
Sbjct: 384 GISIGSLGRYKDEKDVTDINVKDCTLKKTSNGLRIKAYEDAASVLTASKIHYENIKMEDS 563
Query: 181 SYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNC 324
S PIIID KYCPN IC SGASKV DV FKN+ GTS +PEA++L C
Sbjct: 564 SNPIIIDMKYCPNKICTASGASKVTRQDVSFKNVTGTSASPEAVSLLC 707
>gb|CF481307.1|CF481307 POL1_71_E06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_71_E06_A002 3', mRNA sequence
Length = 514
Score = 162 bits (349), Expect = 4e-039
Identities = 66/111 (59%), Positives = 82/111 (73%)
Frame = +1 / +3
Query: 139 ASKFLYEGITMDNVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITL 318
ASK YE I M++ S PIIID KYCPN IC SGASKV V DV FKN+ GTS +PEA++L
Sbjct: 3 ASKIHYENIKMEDSSNPIIIDMKYCPNKICTASGASKVTVKDVSFKNVTGTSASPEAVSL 182
Query: 319 NCANNLPCQGVQLVNVDIKYNGSGNKTMAVCKNAIGKSIGLAKELACI*TN 471
C++ +PC GV + NV ++Y+G NKTMAVC+NA G + G KELAC *T+
Sbjct: 183 LCSDKIPCTGVTMDNVKVEYSGKNNKTMAVCQNAKGSATGCLKELACF*TS 335
Score = 114 bits (243), Expect = 2e-024
Identities = 56/99 (56%), Positives = 67/99 (67%)
Frame = -3 / -1
Query: 458 HASSFAKPMDLPMAFLQTAMVLLPDPLYLMSTLTSCTPWHGRLLAQLSVMASGVLEVPWM 279
HASS +P+ LP+AF TAMVLL PLY TL+ TP G L Q + ASG+ EVP
Sbjct: 322 HASSLRQPVALPLAFWHTAMVLLFLPLYSTLTLSMVTPVQGILSEQSRLTASGLAEVPVT 143
Query: 278 FLKTTSLTATLEAPDLTQMLLGQYFWSMMMG*ETLSMVM 162
FLK TSLT TLEAP Q+LLGQYF SM+MG + S++M
Sbjct: 142 FLKETSLTVTLEAPLAVQILLGQYFMSMIMGFDESSILM 26
>gb|BZ423602.1|BZ423602 id51c01.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone id51c01 5', DNA sequence
Length = 574
Score = 161 bits (347), Expect = 8e-039
Identities = 67/101 (66%), Positives = 76/101 (75%)
Frame = +1 / +1
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLGRYKDEKDV D+ V CT+ T+NG+RIKSYED+ + ASK YE I MD+V
Sbjct: 271 GISVGSLGRYKDEKDVTDINVKDCTLKKTSNGVRIKSYEDAACVITASKLHYENIAMDDV 450
Query: 181 SYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTP 303
+ PIIID KYCPN IC G SKV V DV FKNI GTS+TP
Sbjct: 451 ANPIIIDMKYCPNKICTAKGDSKVTVKDVTFKNITGTSSTP 573
>gb|CF485402.1|CF485402 POL1_31_G04.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_31_G04_A002 3', mRNA sequence
Length = 526
Score = 160 bits (345), Expect = 1e-038
Identities = 65/110 (59%), Positives = 81/110 (73%)
Frame = +1 / +1
Query: 142 SKFLYEGITMDNVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLN 321
SK YE I M++ S PIIID KYCPN IC SGASKV V DV FKN+ GTS +PEA++L
Sbjct: 49 SKIHYENIKMEDSSNPIIIDMKYCPNKICTASGASKVTVKDVSFKNVTGTSASPEAVSLL 228
Query: 322 CANNLPCQGVQLVNVDIKYNGSGNKTMAVCKNAIGKSIGLAKELACI*TN 471
C++ +PC GV + NV ++Y+G NKTMAVC+NA G + G KELAC *T+
Sbjct: 229 CSDKIPCTGVTMDNVKVEYSGKNNKTMAVCQNAKGSATGCLKELACF*TS 378
Score = 114 bits (243), Expect = 2e-024
Identities = 56/99 (56%), Positives = 67/99 (67%)
Frame = -3 / -3
Query: 458 HASSFAKPMDLPMAFLQTAMVLLPDPLYLMSTLTSCTPWHGRLLAQLSVMASGVLEVPWM 279
HASS +P+ LP+AF TAMVLL PLY TL+ TP G L Q + ASG+ EVP
Sbjct: 365 HASSLRQPVALPLAFWHTAMVLLFLPLYSTLTLSMVTPVQGILSEQSRLTASGLAEVPVT 186
Query: 278 FLKTTSLTATLEAPDLTQMLLGQYFWSMMMG*ETLSMVM 162
FLK TSLT TLEAP Q+LLGQYF SM+MG + S++M
Sbjct: 185 FLKETSLTVTLEAPLAVQILLGQYFMSMIMGFDESSILM 69
>gb|CF489359.1|CF489359 POL1_57_D04.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_57_D04_A002 3', mRNA sequence
Length = 578
Score = 160 bits (345), Expect = 1e-038
Identities = 65/110 (59%), Positives = 81/110 (73%)
Frame = +1 / +1
Query: 142 SKFLYEGITMDNVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLN 321
SK YE I M++ S PIIID KYCPN IC SGASKV V DV FKN+ GTS +PEA++L
Sbjct: 1 SKIHYENIKMEDSSNPIIIDMKYCPNKICTASGASKVTVKDVSFKNVTGTSASPEAVSLL 180
Query: 322 CANNLPCQGVQLVNVDIKYNGSGNKTMAVCKNAIGKSIGLAKELACI*TN 471
C++ +PC GV + NV ++Y+G NKTMAVC+NA G + G KELAC *T+
Sbjct: 181 CSDKIPCTGVTMDNVKVEYSGKNNKTMAVCQNAKGSATGCLKELACF*TS 330
Score = 114 bits (243), Expect = 2e-024
Identities = 56/99 (56%), Positives = 67/99 (67%)
Frame = -3 / -1
Query: 458 HASSFAKPMDLPMAFLQTAMVLLPDPLYLMSTLTSCTPWHGRLLAQLSVMASGVLEVPWM 279
HASS +P+ LP+AF TAMVLL PLY TL+ TP G L Q + ASG+ EVP
Sbjct: 317 HASSLRQPVALPLAFWHTAMVLLFLPLYSTLTLSMVTPVQGILSEQSRLTASGLAEVPVT 138
Query: 278 FLKTTSLTATLEAPDLTQMLLGQYFWSMMMG*ETLSMVM 162
FLK TSLT TLEAP Q+LLGQYF SM+MG + S++M
Sbjct: 137 FLKETSLTVTLEAPLAVQILLGQYFMSMIMGFDESSILM 21
>gb|CF480663.1|CF480663 POL1_67_D09.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_67_D09_A002 3', mRNA sequence
Length = 552
Score = 159 bits (341), Expect = 5e-038
Identities = 64/110 (58%), Positives = 80/110 (72%)
Frame = +1 / +1
Query: 142 SKFLYEGITMDNVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLN 321
SK YE I M++ S PIIID KYCPN IC SGASKV V DV FKN+ GTS +PEA++L
Sbjct: 1 SKIHYENIKMEDSSNPIIIDMKYCPNKICTASGASKVTVKDVSFKNVTGTSASPEAVSLL 180
Query: 322 CANNLPCQGVQLVNVDIKYNGSGNKTMAVCKNAIGKSIGLAKELACI*TN 471
C++ +PC GV + N ++Y+G NKTMAVC+NA G + G KELAC *T+
Sbjct: 181 CSDKIPCTGVTMDNAKVEYSGKNNKTMAVCQNAKGSATGCLKELACF*TS 330
Score = 111 bits (238), Expect = 8e-024
Identities = 55/99 (55%), Positives = 66/99 (66%)
Frame = -3 / -2
Query: 458 HASSFAKPMDLPMAFLQTAMVLLPDPLYLMSTLTSCTPWHGRLLAQLSVMASGVLEVPWM 279
HASS +P+ LP+AF TAMVLL PLY L+ TP G L Q + ASG+ EVP
Sbjct: 317 HASSLRQPVALPLAFWHTAMVLLFLPLYSTLALSMVTPVQGILSEQSRLTASGLAEVPVT 138
Query: 278 FLKTTSLTATLEAPDLTQMLLGQYFWSMMMG*ETLSMVM 162
FLK TSLT TLEAP Q+LLGQYF SM+MG + S++M
Sbjct: 137 FLKETSLTVTLEAPLAVQILLGQYFMSMIMGFDESSILM 21
>gb|CF487982.1|CF487982 POL1_47_C02.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_47_C02_A002 3', mRNA sequence
Length = 564
Score = 159 bits (341), Expect = 5e-038
Identities = 64/109 (58%), Positives = 80/109 (73%)
Frame = +1 / +2
Query: 145 KFLYEGITMDNVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNC 324
K YE I M++ S PIIID KYCPN IC SGASKV V DV FKN+ GTS +PEA++L C
Sbjct: 2 KIHYENIKMEDSSNPIIIDMKYCPNKICTASGASKVTVKDVSFKNVTGTSASPEAVSLLC 181
Query: 325 ANNLPCQGVQLVNVDIKYNGSGNKTMAVCKNAIGKSIGLAKELACI*TN 471
++ +PC GV + NV ++Y+G NKTMAVC+NA G + G KELAC *T+
Sbjct: 182 SDKIPCTGVTMDNVKVEYSGKNNKTMAVCQNAKGSATGCLKELACF*TS 328
Score = 114 bits (243), Expect = 2e-024
Identities = 56/99 (56%), Positives = 67/99 (67%)
Frame = -3 / -1
Query: 458 HASSFAKPMDLPMAFLQTAMVLLPDPLYLMSTLTSCTPWHGRLLAQLSVMASGVLEVPWM 279
HASS +P+ LP+AF TAMVLL PLY TL+ TP G L Q + ASG+ EVP
Sbjct: 315 HASSLRQPVALPLAFWHTAMVLLFLPLYSTLTLSMVTPVQGILSEQSRLTASGLAEVPVT 136
Query: 278 FLKTTSLTATLEAPDLTQMLLGQYFWSMMMG*ETLSMVM 162
FLK TSLT TLEAP Q+LLGQYF SM+MG + S++M
Sbjct: 135 FLKETSLTVTLEAPLAVQILLGQYFMSMIMGFDESSILM 19
>gb|CF488593.1|CF488593 POL1_51_A10.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_51_A10_A002 3', mRNA sequence
Length = 610
Score = 159 bits (341), Expect = 5e-038
Identities = 64/109 (58%), Positives = 80/109 (73%)
Frame = +1 / +3
Query: 145 KFLYEGITMDNVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNC 324
K YE I M++ S PIIID KYCPN IC SGASKV V DV FKN+ GTS +PEA++L C
Sbjct: 3 KIHYENIKMEDSSNPIIIDMKYCPNKICTASGASKVTVKDVSFKNVTGTSASPEAVSLLC 182
Query: 325 ANNLPCQGVQLVNVDIKYNGSGNKTMAVCKNAIGKSIGLAKELACI*TN 471
++ +PC GV + NV ++Y+G NKTMAVC+NA G + G KELAC *T+
Sbjct: 183 SDKIPCTGVTMDNVKVEYSGKNNKTMAVCQNAKGSATGCLKELACF*TS 329
Score = 114 bits (243), Expect = 2e-024
Identities = 56/99 (56%), Positives = 67/99 (67%)
Frame = -3 / -1
Query: 458 HASSFAKPMDLPMAFLQTAMVLLPDPLYLMSTLTSCTPWHGRLLAQLSVMASGVLEVPWM 279
HASS +P+ LP+AF TAMVLL PLY TL+ TP G L Q + ASG+ EVP
Sbjct: 316 HASSLRQPVALPLAFWHTAMVLLFLPLYSTLTLSMVTPVQGILSEQSRLTASGLAEVPVT 137
Query: 278 FLKTTSLTATLEAPDLTQMLLGQYFWSMMMG*ETLSMVM 162
FLK TSLT TLEAP Q+LLGQYF SM+MG + S++M
Sbjct: 136 FLKETSLTVTLEAPLAVQILLGQYFMSMIMGFDESSILM 20
>gb|CW258561.1|CW258561 104_724_11227944_148_35167_088 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11227944, DNA
sequence
Length = 663
Score = 115 bits (245), Expect(2) = 6e-038
Identities = 46/76 (60%), Positives = 56/76 (73%)
Frame = +1 / +3
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GIS+G LGRYKDEKDV DV V C + TTNG+RIKSYED++S L AS +E I M+ V
Sbjct: 288 GISIGCLGRYKDEKDVTDVTVRDCVLKKTTNGVRIKSYEDAESVLTASHLTFENIRMEEV 467
Query: 181 SYPIIIDQKYCPNNIC 228
+ PIIIDQ +CP +C
Sbjct: 468 ANPIIIDQYFCPEKVC 515
Score = 63.8 bits (133), Expect(2) = 6e-038
Identities = 25/46 (54%), Positives = 35/46 (76%)
Frame = +1 / +3
Query: 232 KSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVD 369
KS +S V V DV F+NI GTS+TP+AI+L C+ + PC GV L++V+
Sbjct: 525 KSDSSHVIVKDVTFRNITGTSSTPQAISLLCSQSQPCSGVSLIDVN 662
>gb|BG412065.1|BG412065 OV2_37_E12.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 459
Score = 158 bits (339), Expect = 1e-037
Identities = 66/98 (67%), Positives = 75/98 (76%)
Frame = +1 / +1
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GIS+GSLGRYKDEKDV D+ V CT+ T+NGLRIK+YED+ S L ASK YE I M++
Sbjct: 160 GISIGSLGRYKDEKDVTDINVKDCTLKKTSNGLRIKAYEDAASVLTASKIHYENIKMEDS 339
Query: 181 SYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTS 294
S PIIID KYCPN IC SGASKV V DV FKN+ GTS
Sbjct: 340 SNPIIIDMKYCPNKICTASGASKVTVKDVSFKNVTGTS 453
>gb|CF481619.1|CF481619 POL1_73_B09.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_73_B09_A002 3', mRNA sequence
Length = 552
Score = 158 bits (339), Expect = 1e-037
Identities = 64/110 (58%), Positives = 80/110 (72%)
Frame = +1 / +2
Query: 142 SKFLYEGITMDNVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLN 321
SK YE I M++ S PIIID KYCPN IC SGASKV V DV FK + GTS +PEA++L
Sbjct: 2 SKIHYENIKMEDSSNPIIIDMKYCPNKICTASGASKVTVKDVSFKKVTGTSASPEAVSLL 181
Query: 322 CANNLPCQGVQLVNVDIKYNGSGNKTMAVCKNAIGKSIGLAKELACI*TN 471
C++ +PC GV + NV ++Y+G NKTMAVC+NA G + G KELAC *T+
Sbjct: 182 CSDKIPCTGVTMDNVKVEYSGKNNKTMAVCQNAKGSATGCLKELACF*TS 331
Score = 114 bits (243), Expect = 2e-024
Identities = 56/99 (56%), Positives = 67/99 (67%)
Frame = -3 / -1
Query: 458 HASSFAKPMDLPMAFLQTAMVLLPDPLYLMSTLTSCTPWHGRLLAQLSVMASGVLEVPWM 279
HASS +P+ LP+AF TAMVLL PLY TL+ TP G L Q + ASG+ EVP
Sbjct: 318 HASSLRQPVALPLAFWHTAMVLLFLPLYSTLTLSMVTPVQGILSEQSRLTASGLAEVPVT 139
Query: 278 FLKTTSLTATLEAPDLTQMLLGQYFWSMMMG*ETLSMVM 162
FLK TSLT TLEAP Q+LLGQYF SM+MG + S++M
Sbjct: 138 FLKETSLTVTLEAPLAVQILLGQYFMSMIMGFDESSILM 22
>gb|CF481930.1|CF481930 POL1_75_E11.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_75_E11_A002 3', mRNA sequence
Length = 596
Score = 153 bits (329), Expect = 2e-036
Identities = 63/109 (57%), Positives = 79/109 (72%)
Frame = +1 / +3
Query: 145 KFLYEGITMDNVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNC 324
K YE I M++ S PIIID KYCPN IC SGASKV V DV FKN+ GTS +PEA++L C
Sbjct: 3 KIHYENIKMEDSSNPIIIDMKYCPNKICTASGASKVTVKDVSFKNVTGTSASPEAVSLLC 182
Query: 325 ANNLPCQGVQLVNVDIKYNGSGNKTMAVCKNAIGKSIGLAKELACI*TN 471
++ +PC GV + NV ++Y+G NKTMAVC+NA G + G KELA *T+
Sbjct: 183 SDKIPCTGVTMDNVKVEYSGKNNKTMAVCQNAKGSATGCLKELARF*TS 329
Score = 110 bits (235), Expect = 2e-023
Identities = 55/98 (56%), Positives = 66/98 (67%)
Frame = -3 / -2
Query: 455 ASSFAKPMDLPMAFLQTAMVLLPDPLYLMSTLTSCTPWHGRLLAQLSVMASGVLEVPWMF 276
ASS +P+ LP+AF TAMVLL PLY TL+ TP G L Q + ASG+ EVP F
Sbjct: 313 ASSLRQPVALPLAFWHTAMVLLFLPLYSTLTLSMVTPVQGILSEQSRLTASGLAEVPVTF 134
Query: 275 LKTTSLTATLEAPDLTQMLLGQYFWSMMMG*ETLSMVM 162
LK TSLT TLEAP Q+LLGQYF SM+MG + S++M
Sbjct: 133 LKETSLTVTLEAPLAVQILLGQYFMSMIMGFDESSILM 20
>gb|CF481916.1|CF481916 POL1_75_D02.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_75_D02_A002 3', mRNA sequence
Length = 595
Score = 152 bits (327), Expect = 4e-036
Identities = 61/103 (59%), Positives = 77/103 (74%)
Frame = +1 / +1
Query: 163 ITMDNVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPC 342
I M++ S PIIID KYCPN IC SGASKV V DV FKN+ GTS +PEA++L C++ +PC
Sbjct: 4 IKMEDSSNPIIIDMKYCPNKICTASGASKVTVKDVSFKNVTGTSASPEAVSLLCSDKIPC 183
Query: 343 QGVQLVNVDIKYNGSGNKTMAVCKNAIGKSIGLAKELACI*TN 471
GV + NV ++Y+G NKTMAVC+NA G + G KELAC *T+
Sbjct: 184 TGVTMDNVKVEYSGKNNKTMAVCQNAKGSATGCLKELACF*TS 312
Score = 114 bits (243), Expect = 2e-024
Identities = 56/99 (56%), Positives = 67/99 (67%)
Frame = -3 / -3
Query: 458 HASSFAKPMDLPMAFLQTAMVLLPDPLYLMSTLTSCTPWHGRLLAQLSVMASGVLEVPWM 279
HASS +P+ LP+AF TAMVLL PLY TL+ TP G L Q + ASG+ EVP
Sbjct: 299 HASSLRQPVALPLAFWHTAMVLLFLPLYSTLTLSMVTPVQGILSEQSRLTASGLAEVPVT 120
Query: 278 FLKTTSLTATLEAPDLTQMLLGQYFWSMMMG*ETLSMVM 162
FLK TSLT TLEAP Q+LLGQYF SM+MG + S++M
Sbjct: 119 FLKETSLTVTLEAPLAVQILLGQYFMSMIMGFDESSILM 3
>gb|CF483278.1|CF483278 POL1_21_D07.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_21_D07_A002 3', mRNA sequence
Length = 567
Score = 89.5 bits (189), Expect(2) = 1e-035
Identities = 37/55 (67%), Positives = 43/55 (78%)
Frame = +1 / +3
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGI 165
GIS+GSLGRYKDEKDV D+ V CT+ T+NGLRIK+YED+ S L ASK YE I
Sbjct: 54 GISIGSLGRYKDEKDVTDINVKDCTLKKTSNGLRIKAYEDAASVLTASKIHYENI 218
Score = 83.5 bits (176), Expect(2) = 1e-035
Identities = 31/59 (52%), Positives = 45/59 (76%)
Frame = +1 / +1
Query: 295 NTPEAITLNCANNLPCQGVQLVNVDIKYNGSGNKTMAVCKNAIGKSIGLAKELACI*TN 471
++PEA++L C++ +PC GV + NV ++Y+G NKTMAVC+NA G + G KELAC *T+
Sbjct: 223 SSPEAVSLLCSDKIPCTGVTMDNVKVEYSGKNNKTMAVCQNAKGSATGCLKELACF*TS 399
>gb|CW197885.1|CW197885 104_622_11181920_148_36831_026 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11181920, DNA
sequence
Length = 668
Score = 151 bits (324), Expect = 1e-035
Identities = 60/101 (59%), Positives = 76/101 (75%)
Frame = +1 / +2
Query: 169 MDNVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQG 348
M++ S PIIID KYCPN IC SGASKV V DV FKN+ GTS +PEA++L C++ +PC G
Sbjct: 2 MEDSSNPIIIDMKYCPNKICTASGASKVTVKDVSFKNVTGTSASPEAVSLLCSDKIPCTG 181
Query: 349 VQLVNVDIKYNGSGNKTMAVCKNAIGKSIGLAKELACI*TN 471
V + NV ++Y+G NKTMAVC+NA G + G KELAC *T+
Sbjct: 182 VTMDNVKVEYSGKNNKTMAVCQNAKGSATGCLKELACF*TS 304
Score = 111 bits (237), Expect = 1e-023
Identities = 54/91 (59%), Positives = 62/91 (68%)
Frame = -3 / -3
Query: 458 HASSFAKPMDLPMAFLQTAMVLLPDPLYLMSTLTSCTPWHGRLLAQLSVMASGVLEVPWM 279
HASS +P+ LP+AF TAMVLL PLY TL+ TP G L Q + ASG+ EVP
Sbjct: 291 HASSLRQPVALPLAFWHTAMVLLFLPLYSTLTLSMVTPVQGILSEQSRLTASGLAEVPVT 112
Query: 278 FLKTTSLTATLEAPDLTQMLLGQYFWSMMMG 186
FLK TSLT TLEAP Q+LLGQYF SM+MG
Sbjct: 111 FLKETSLTVTLEAPLAVQILLGQYFMSMIMG 19
>gb|CF489851.1|CF489851 POL1_61_B02.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_61_B02_A002 3', mRNA sequence
Length = 629
Score = 148 bits (318), Expect = 8e-035
Identities = 62/93 (66%), Positives = 71/93 (76%)
Frame = +1 / +3
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GIS+GSLGRYKDEKDV D+ V CT+ T+NGLRIK+YED+ S L ASK YE I M++
Sbjct: 21 GISIGSLGRYKDEKDVTDINVKDCTLKKTSNGLRIKAYEDAASVLTASKIHYENIKMEDS 200
Query: 181 SYPIIIDQKYCPNNICVKSGASKVAVNDVVFKN 279
S PIIID KYCPN IC SGASKV V DV FK+
Sbjct: 201 SNPIIIDMKYCPNKICTASGASKVTVKDVSFKD 299
>gb|CW333142.1|CW333142 104_831_11481784_116_36045_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481784, DNA
sequence
Length = 647
Score = 103 bits (219), Expect(2) = 8e-035
Identities = 41/77 (53%), Positives = 56/77 (72%)
Frame = +1 / -2
Query: 232 KSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNGSGNKTMAVC 411
KS +S V V DV F+NI GTS+TP+AI+L C+ + PC GV L++V+++Y G NKTMAVC
Sbjct: 502 KSDSSHVIVKDVTFRNITGTSSTPQAISLLCSQSQPCSGVSLIDVNVEYAGKNNKTMAVC 323
Query: 412 KNAIGKSIGLAKELACI 462
NA G + G + LAC+
Sbjct: 322 SNAKGTAKGSVEALACL 272
Score = 65.2 bits (136), Expect(2) = 8e-035
Identities = 25/45 (55%), Positives = 33/45 (73%)
Frame = +1 / -2
Query: 94 GLRIKSYEDSKSSLKASKFLYEGITMDNVSYPIIIDQKYCPNNIC 228
G+RIKSYED++S L AS +E I M+ V+ PIIIDQ +CP +C
Sbjct: 646 GVRIKSYEDAESVLTASHLTFENIRMEEVANPIIIDQYFCPEKVC 512
>gb|CF486365.1|CF486365 POL1_37_F12.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_37_F12_A002 3', mRNA sequence
Length = 559
Score = 147 bits (316), Expect = 1e-034
Identities = 58/95 (61%), Positives = 72/95 (75%)
Frame = +1 / +1
Query: 187 PIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNV 366
PIIID KYCPN IC SGASKV V DV FKN+ GTS +PEA++L C++ +PC GV + NV
Sbjct: 37 PIIIDMKYCPNKICTASGASKVTVKDVSFKNVTGTSASPEAVSLLCSDKIPCTGVTMDNV 216
Query: 367 DIKYNGSGNKTMAVCKNAIGKSIGLAKELACI*TN 471
++Y+G NKTMAVC+NA G + G KELAC *T+
Sbjct: 217 KVEYSGKNNKTMAVCQNAKGSATGCLKELACF*TS 321
Score = 111 bits (237), Expect = 1e-023
Identities = 54/91 (59%), Positives = 62/91 (68%)
Frame = -3 / -3
Query: 458 HASSFAKPMDLPMAFLQTAMVLLPDPLYLMSTLTSCTPWHGRLLAQLSVMASGVLEVPWM 279
HASS +P+ LP+AF TAMVLL PLY TL+ TP G L Q + ASG+ EVP
Sbjct: 308 HASSLRQPVALPLAFWHTAMVLLFLPLYSTLTLSMVTPVQGILSEQSRLTASGLAEVPVT 129
Query: 278 FLKTTSLTATLEAPDLTQMLLGQYFWSMMMG 186
FLK TSLT TLEAP Q+LLGQYF SM+MG
Sbjct: 128 FLKETSLTVTLEAPLAVQILLGQYFMSMIMG 36
>gb|BZ422208.1|BZ422208 id51a01.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone id51a01 5', DNA sequence
Length = 554
Score = 144 bits (310), Expect = 1e-033
Identities = 56/93 (60%), Positives = 69/93 (74%)
Frame = +1 / -3
Query: 187 PIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNV 366
PIIID KYCPN IC G SKV V DV FKNI GTS+TPEA++L C++ +PC GV + N+
Sbjct: 552 PIIIDMKYCPNKICTAKGDSKVTVKDVTFKNITGTSSTPEAVSLLCSDKIPCSGVTMDNI 373
Query: 367 DIKYNGSGNKTMAVCKNAIGKSIGLAKELACI* 465
++Y G+ NKTMAVC+NA G + G KELAC *
Sbjct: 372 KVEYKGTNNKTMAVCQNAKGSATGCLKELACF* 274
Score = 110 bits (234), Expect = 3e-023
Identities = 54/96 (56%), Positives = 63/96 (65%)
Frame = -3 / +2
Query: 473 QLVQMHASSFAKPMDLPMAFLQTAMVLLPDPLYLMSTLTSCTPWHGRLLAQLSVMASGVL 294
++ Q ASS +P+ LP+AF TAMVLL PLY L+ TP G L Q + ASGV
Sbjct: 266 RIAQKQASSLRQPVALPLAF*HTAMVLLLVPLYSTLMLSMVTPLQGILSEQSRLTASGVD 445
Query: 293 EVPWMFLKTTSLTATLEAPDLTQMLLGQYFWSMMMG 186
EVP MFL TSLT TLE+P Q+LLGQYF SMMMG
Sbjct: 446 EVPVMFLNVTSLTVTLESPLAVQILLGQYFMSMMMG 553
>gb|BG323126.1|BG323126 EM1_15_B11.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 622
Score = 144 bits (310), Expect = 1e-033
Identities = 56/93 (60%), Positives = 69/93 (74%)
Frame = +1 / +3
Query: 187 PIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNV 366
PIIID KYCPN IC G SKV V DV FKNI GTS+TPEA++L C++ +PC GV + N+
Sbjct: 6 PIIIDMKYCPNKICTAKGDSKVTVKDVTFKNITGTSSTPEAVSLLCSDKIPCSGVTMDNI 185
Query: 367 DIKYNGSGNKTMAVCKNAIGKSIGLAKELACI* 465
++Y G+ NKTMAVC+NA G + G KELAC *
Sbjct: 186 KVEYKGTNNKTMAVCQNAKGSATGCLKELACF* 284
Score = 110 bits (234), Expect = 3e-023
Identities = 54/96 (56%), Positives = 63/96 (65%)
Frame = -3 / -1
Query: 473 QLVQMHASSFAKPMDLPMAFLQTAMVLLPDPLYLMSTLTSCTPWHGRLLAQLSVMASGVL 294
++ Q ASS +P+ LP+AF TAMVLL PLY L+ TP G L Q + ASGV
Sbjct: 292 RIAQKQASSLRQPVALPLAF*HTAMVLLLVPLYSTLMLSMVTPLQGILSEQSRLTASGVD 113
Query: 293 EVPWMFLKTTSLTATLEAPDLTQMLLGQYFWSMMMG 186
EVP MFL TSLT TLE+P Q+LLGQYF SMMMG
Sbjct: 112 EVPVMFLNVTSLTVTLESPLAVQILLGQYFMSMMMG 5
>gb|CF482926.1|CF482926 POL1_10_C07.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_10_C07_A002 3', mRNA sequence
Length = 584
Score = 141 bits (302), Expect(2) = 1e-033
Identities = 55/92 (59%), Positives = 70/92 (76%)
Frame = +1 / +1
Query: 154 YEGITMDNVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANN 333
YE I M++ S PIIID KYCPN IC SGASKV V DV FKN+ GTS +PEA++L C++
Sbjct: 1 YENIKMEDSSNPIIIDMKYCPNKICTASGASKVTVKDVSFKNVTGTSASPEAVSLLCSDK 180
Query: 334 LPCQGVQLVNVDIKYNGSGNKTMAVCKNAIGK 429
+PC GV + NV ++Y+G NKTMAVC+NA G+
Sbjct: 181 IPCTGVTMDNVKVEYSGKNNKTMAVCQNAKGQ 276
Score = 100 bits (213), Expect(2) = 3e-021
Identities = 50/88 (56%), Positives = 59/88 (67%)
Frame = -3 / -1
Query: 425 PMAFLQTAMVLLPDPLYLMSTLTSCTPWHGRLLAQLSVMASGVLEVPWMFLKTTSLTATL 246
P+AF TAMVLL PLY TL+ TP G L Q + ASG+ EVP FLK TSLT TL
Sbjct: 272 PLAFWHTAMVLLFLPLYSTLTLSMVTPVQGILSEQSRLTASGLAEVPVTFLKETSLTVTL 93
Query: 245 EAPDLTQMLLGQYFWSMMMG*ETLSMVM 162
EAP Q+LLGQYF SM+MG + S++M
Sbjct: 92 EAPLAVQILLGQYFMSMIMGFDESSILM 9
Score = 23.5 bits (45), Expect(2) = 1e-033
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1 / +2
Query: 412 KNAIGKSIGLAKELACI*TN 471
K G + G KELAC *T+
Sbjct: 260 KTPRGSATGCLKELACF*TS 319
Score = 22.1 bits (42), Expect(2) = 3e-021
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -3 / -3
Query: 458 HASSFAKPMDLPMAFL 411
HASS +P+ LP+ L
Sbjct: 306 HASSLRQPVALPLGVL 259
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 723,694,204
Number of Sequences: 832831
Number of extensions: 10665256
Number of successful extensions: 114666
Number of sequences better than 1.0e-020: 78
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 20435953304
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)