TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3106160.2.1
(788 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW500051.1|CW500051 fsbb001f295c08f0 Sorghum methylation... 211 7e-078
gb|CW267332.1|CW267332 104_737_11400674_148_35294_005 Sorgh... 211 6e-069
gb|CF756274.1|CF756274 DSAF1_4_C09.g1_A011 Drought-stressed... 188 3e-062
gb|CN136110.1|CN136110 OX1_40_G10.g1_A002 Oxidatively-stres... 213 5e-055
gb|CN136023.1|CN136023 OX1_40_G10.b1_A002 Oxidatively-stres... 171 2e-042
>gb|CW500051.1|CW500051 fsbb001f295c08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f295c08, DNA
sequence
Length = 656
Score = 211 bits (456), Expect(4) = 3e-074
Identities = 94/117 (80%), Positives = 102/117 (87%)
Frame = +3 / -2
Query: 261 TIVQSLRESGVFTSAIAAGQPAVNAKLSPKETNAQSQNVTAPGNMTRVVRSTDSKASGRK 440
+IVQSLRESGVFTSAIAAGQPAVNAKLSPK+TNAQSQNVT PGN+TRVVR+TDSKAS RK
Sbjct: 487 SIVQSLRESGVFTSAIAAGQPAVNAKLSPKKTNAQSQNVTTPGNLTRVVRATDSKASARK 308
Query: 441 ILQAVDLAFSDTNVTAVPPLSPPSLDEHRHHSE**CHTYHIYIFCSAYKLLRKGRKE 611
ILQ+VDL F DT+VTAVPPLSPPSLDEH+HHSE** + AYK LRKGRKE
Sbjct: 307 ILQSVDLVFRDTDVTAVPPLSPPSLDEHKHHSE**WSYDMFFFSRWAYKFLRKGRKE 137
Score = 204 bits (440), Expect(4) = 8e-068
Identities = 93/116 (80%), Positives = 96/116 (82%)
Frame = -1 / +2
Query: 611 FFSSFS*ELIRRAKNIYMIRMTLLFTMMPVFVQTGRRQRWNSSYISIAEGKINGLQYLSA 432
FFSSFS*E IR + I LLFT+M VFVQTGRRQ WNSSYISI E KINGLQYLS+
Sbjct: 137 FFSSFS*EFIRPTRKKEHII*PLLFTVMLVFVQTGRRQWWNSSYISIPEDKINGLQYLSS 316
Query: 431 *CL*ISRSDHSCHVPRCGNILALRIGFLG*EFGIHSRLASCNGGSEDTGFAQTLNN 264
CL IS SDHSC VPRCGNILALRIGFLG*EFGIHSRLASCNG SEDT FAQTLNN
Sbjct: 317 RCLRISSSDHSCQVPRCGNILALRIGFLG*EFGIHSRLASCNG*SEDTRFAQTLNN 484
Score = 203 bits (437), Expect(2) = 3e-058
Identities = 88/118 (74%), Positives = 95/118 (80%)
Frame = -3 / +1
Query: 612 FLFFLFLGAYTPSKKXXXXXXXXXXXXDACVRPNWAATTVEQQLH*YR*RQDQRLAVSFC 433
FLFFLFLG YTP++K DACVRPNWAAT VEQQLH Y *RQDQR+A+SF
Sbjct: 136 FLFFLFLGIYTPNEKKRTYHMTIIIHCDACVRPNWAATMVEQQLHQYP*RQDQRIAISF* 315
Query: 432 LMPLNQ*I*PLLSCSQVR*HFGSAHWFPWVRVWHSQQVGQLQWRK*RHRIRADSEQLS 259
MP NQ*+*PLLS SQV *HFGSAHWF WVRVWHSQQVGQLQW K*RH+IRADSEQL+
Sbjct: 316 QMP*NQ*L*PLLSSSQVW*HFGSAHWFSWVRVWHSQQVGQLQWLK*RHQIRADSEQLT 489
Score = 198 bits (427), Expect(5) = 7e-078
Identities = 85/95 (89%), Positives = 86/95 (90%)
Frame = -2 / +3
Query: 547 HYYSL*CLCSSKLGGDNGGTAVTLVSLKARSTACSIFLPDAFESVDLTTLVMFPGAVTFW 368
HYYSL*CLCSSKLGGDNGGTAVT VSLK RST C+IFL DA ESV LTTLV FPG VTFW
Sbjct: 201 HYYSL*CLCSSKLGGDNGGTAVTSVSLKTRSTDCNIFLADALESVALTTLVKFPGVVTFW 380
Query: 367 LCALVSLGESLAFTAGWPAAMAEVKTPDSRRL*TI 263
LCALV LGESLAFTAGWPAAMAEVKTPDSRRL*TI
Sbjct: 381 LCALVFLGESLAFTAGWPAAMAEVKTPDSRRL*TI 485
Score = 192 bits (413), Expect(4) = 5e-064
Identities = 76/89 (85%), Positives = 77/89 (86%)
Frame = +2 / -1
Query: 263 NCSESARIRCLHFRHCSWPTCCECQTLTQGNQCAEPKCYRTWEHDKSGQIY*FKGIRQKD 442
NCSESARI CLHF HCSWPTCCECQTLTQ NQCAEPKCY TWE DKSGQ Y*F GI KD
Sbjct: 485 NCSESARIWCLHFSHCSWPTCCECQTLTQENQCAEPKCYHTWELDKSGQSY*F*GIC*KD 306
Query: 443 TASR*SCLQRY*CNCCSTVVAAQFGRTQA 529
A R*SCLQ Y*CNCCST+VAAQFGRTQA
Sbjct: 305 IAIR*SCLQGY*CNCCSTIVAAQFGRTQA 219
Score = 186 bits (400), Expect(4) = 4e-059
Identities = 78/88 (88%), Positives = 79/88 (89%)
Frame = +1 / -3
Query: 262 QLFRVCANPVSSLPPLQLANLL*MPNSHPRKPMRRAKMLPHLGT*QEWSDLLIQRHQAER 441
QLFRVCAN VSSL PLQLANLL*MPNSHPRKPMRRAKMLPHLGT*QEWS+LLI RH ER
Sbjct: 486 QLFRVCANLVSSLQPLQLANLL*MPNSHPRKPMRRAKMLPHLGT*QEWSELLILRHLLER 307
Query: 442 YCKPLILPSAILM*LLFHRCRRPVWTNT 525
YC PLIL S ILM*LLFH CRRPVWTNT
Sbjct: 306 YCNPLILSSGILM*LLFHHCRRPVWTNT 223
Score = 64.8 bits (135), Expect(5) = 7e-078
Identities = 23/35 (65%), Positives = 28/35 (80%)
Frame = -2 / +1
Query: 742 CCPHPHLTSIAKKDACQNFAAADCIKIDHPS*C*H 638
C PHP++ I KK ACQN +AADCI++DHP *C*H
Sbjct: 4 CYPHPNIPLITKKTACQNSSAADCIEVDHPC*C*H 108
Score = 55.6 bits (115), Expect(4) = 3e-074
Identities = 22/37 (59%), Positives = 26/37 (70%)
Frame = +3 / -1
Query: 633 EKC*HQLGWSIFMQSAAAKFWQASFFAIEVRCGCGQH 743
++C*HQ GWS MQSAA +FWQA F I+ GCG H
Sbjct: 113 QRC*HQHGWSTSMQSAADEFWQAVFLVIKGIFGCG*H 3
Score = 54.2 bits (112), Expect(4) = 5e-064
Identities = 22/36 (61%), Positives = 28/36 (77%)
Frame = +2 / -3
Query: 635 EVLTSAWMVNFYAICGSEILAGVFFRDRSEMRVRAT 742
+VLTSAWMVNFYAIC ILAG F ++ ++R+R T
Sbjct: 111 KVLTSAWMVNFYAICSR*ILAGSLFGNQRDIRMRIT 4
Score = 47.3 bits (97), Expect(4) = 4e-059
Identities = 22/46 (47%), Positives = 30/46 (65%)
Frame = +1 / -2
Query: 604 EKKVTDIFVKRSANISLDGQFLCNLRQRNSGRRLFSRSK*DAGAGN 741
++KV + + ANIS+DGQ LCNL+Q N GR+ F SK + A N
Sbjct: 142 KEKVLTSSLNKGANISMDGQLLCNLQQMNFGRQSFW*SKGYSDADN 5
Score = 46.0 bits (94), Expect(4) = 8e-068
Identities = 24/35 (68%), Positives = 26/35 (74%)
Frame = -3 / +2
Query: 741 VARTRISLRSRKKTPARISLPQIA*KLTIQADVST 637
V R RISL K+ PA+I L QIA*KLTI ADVST
Sbjct: 5 VIRIRISL*LPKRLPAKIHLLQIA*KLTIHADVST 109
Score = 44.1 bits (90), Expect(2) = 3e-058
Identities = 22/45 (48%), Positives = 29/45 (64%)
Frame = -1 / +3
Query: 743 MLPAPASHFDREKRRLPEFRCRRLHKN*PSKLMLALLLTKMSVTF 609
+L A FD +K LP+F C RLH++*PS LMLA L ++ TF
Sbjct: 3 VLSASEYPFDYQKDCLPKFICCRLHRS*PSMLMLAPLFSEDVSTF 137
Score = 39.1 bits (79), Expect(5) = 7e-078
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = -1 / +3
Query: 230 FPQKL*VQLLIGPHDSFIVP 171
FPQKL* QL I PH++FIVP
Sbjct: 597 FPQKL*AQLFIAPHNTFIVP 656
Score = 37.3 bits (75), Expect(5) = 7e-078
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = -1 / +2
Query: 260 HWGVYASQHSFPQK 219
HWGVYASQHSFP +
Sbjct: 566 HWGVYASQHSFPSE 607
Score = 36.8 bits (74), Expect(4) = 8e-068
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = -2 / +1
Query: 226 LRSFKFSCLSVHTTRSLY 173
LRSFK SCLS+ TTRSLY
Sbjct: 601 LRSFKLSCLSLPTTRSLY 654
Score = 36.8 bits (74), Expect(4) = 3e-074
Identities = 15/19 (78%), Positives = 18/19 (94%)
Frame = +3 / -1
Query: 174 YNERVVWTDKQLNLKLLRK 230
YNERVV +DKQL+LKLLR+
Sbjct: 653 YNERVVGSDKQLSLKLLRE 597
Score = 33.6 bits (67), Expect(4) = 3e-074
Identities = 13/16 (81%), Positives = 13/16 (81%)
Frame = +2 / -1
Query: 212 LKASEERSADSHIHPN 259
LK ERSADSHIHPN
Sbjct: 614 LKLLRERSADSHIHPN 567
Score = 29.5 bits (58), Expect(4) = 5e-064
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1 / -3
Query: 226 GKEC*LAYTPQ 258
GKEC*LAYTPQ
Sbjct: 600 GKEC*LAYTPQ 568
Score = 29.0 bits (57), Expect(4) = 8e-068
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = -2 / +3
Query: 259 IGVYMRVSTPF 227
IGVYMRVSTPF
Sbjct: 567 IGVYMRVSTPF 599
Score = 29.0 bits (57), Expect(4) = 4e-059
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +3 / -2
Query: 228 KGVLTRIYTPM 260
KGVLTRIYTPM
Sbjct: 598 KGVLTRIYTPM 566
Score = 28.6 bits (56), Expect(5) = 7e-078
Identities = 10/14 (71%), Positives = 14/14 (100%)
Frame = -2 / +3
Query: 610 SFLPFLRSLYAEQK 569
SFLPFLR+LYA+++
Sbjct: 138 SFLPFLRNLYAQRE 179
Score = 27.6 bits (54), Expect(4) = 5e-064
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = +1 / -2
Query: 172 GTMNESCGPISS*T*SF*GK 231
GTMN G I+S* *SF*GK
Sbjct: 655 GTMNVLWGAINS*A*SF*GK 596
Score = 24.4 bits (47), Expect(4) = 4e-059
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = +2 / -3
Query: 173 VQ*TSRVDR*AAELKASE 226
VQ*T +R* AELKASE
Sbjct: 654 VQ*TCCGER*TAELKASE 601
>gb|CW267332.1|CW267332 104_737_11400674_148_35294_005 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11400674, DNA
sequence
Length = 646
Score = 211 bits (456), Expect(2) = 6e-069
Identities = 94/117 (80%), Positives = 102/117 (87%)
Frame = +3 / -2
Query: 261 TIVQSLRESGVFTSAIAAGQPAVNAKLSPKETNAQSQNVTAPGNMTRVVRSTDSKASGRK 440
+IVQSLRESGVFTSAIAAGQPAVNAKLSPK+TNAQSQNVT PGN+TRVVR+TDSKAS RK
Sbjct: 390 SIVQSLRESGVFTSAIAAGQPAVNAKLSPKKTNAQSQNVTTPGNLTRVVRATDSKASARK 211
Query: 441 ILQAVDLAFSDTNVTAVPPLSPPSLDEHRHHSE**CHTYHIYIFCSAYKLLRKGRKE 611
ILQ+VDL F DT+VTAVPPLSPPSLDEH+HHSE** + AYK LRKGRKE
Sbjct: 210 ILQSVDLVFRDTDVTAVPPLSPPSLDEHKHHSE**WSYDMFFFSRWAYKFLRKGRKE 40
Score = 204 bits (440), Expect(2) = 6e-066
Identities = 93/116 (80%), Positives = 96/116 (82%)
Frame = -1 / +1
Query: 611 FFSSFS*ELIRRAKNIYMIRMTLLFTMMPVFVQTGRRQRWNSSYISIAEGKINGLQYLSA 432
FFSSFS*E IR + I LLFT+M VFVQTGRRQ WNSSYISI E KINGLQYLS+
Sbjct: 40 FFSSFS*EFIRPTRKKEHII*PLLFTVMLVFVQTGRRQWWNSSYISIPEDKINGLQYLSS 219
Query: 431 *CL*ISRSDHSCHVPRCGNILALRIGFLG*EFGIHSRLASCNGGSEDTGFAQTLNN 264
CL IS SDHSC VPRCGNILALRIGFLG*EFGIHSRLASCNG SEDT FAQTLNN
Sbjct: 220 RCLRISSSDHSCQVPRCGNILALRIGFLG*EFGIHSRLASCNG*SEDTRFAQTLNN 387
Score = 203 bits (437), Expect(2) = 1e-055
Identities = 88/118 (74%), Positives = 95/118 (80%)
Frame = -3 / +3
Query: 612 FLFFLFLGAYTPSKKXXXXXXXXXXXXDACVRPNWAATTVEQQLH*YR*RQDQRLAVSFC 433
FLFFLFLG YTP++K DACVRPNWAAT VEQQLH Y *RQDQR+A+SF
Sbjct: 39 FLFFLFLGIYTPNEKKRTYHMTIIIHCDACVRPNWAATMVEQQLHQYP*RQDQRIAISF* 218
Query: 432 LMPLNQ*I*PLLSCSQVR*HFGSAHWFPWVRVWHSQQVGQLQWRK*RHRIRADSEQLS 259
MP NQ*+*PLLS SQV *HFGSAHWF WVRVWHSQQVGQLQW K*RH+IRADSEQL+
Sbjct: 219 QMP*NQ*L*PLLSSSQVW*HFGSAHWFSWVRVWHSQQVGQLQWLK*RHQIRADSEQLT 392
Score = 198 bits (427), Expect(3) = 2e-067
Identities = 85/95 (89%), Positives = 86/95 (90%)
Frame = -2 / +2
Query: 547 HYYSL*CLCSSKLGGDNGGTAVTLVSLKARSTACSIFLPDAFESVDLTTLVMFPGAVTFW 368
HYYSL*CLCSSKLGGDNGGTAVT VSLK RST C+IFL DA ESV LTTLV FPG VTFW
Sbjct: 104 HYYSL*CLCSSKLGGDNGGTAVTSVSLKTRSTDCNIFLADALESVALTTLVKFPGVVTFW 283
Query: 367 LCALVSLGESLAFTAGWPAAMAEVKTPDSRRL*TI 263
LCALV LGESLAFTAGWPAAMAEVKTPDSRRL*TI
Sbjct: 284 LCALVFLGESLAFTAGWPAAMAEVKTPDSRRL*TI 388
Score = 192 bits (413), Expect(2) = 1e-058
Identities = 76/89 (85%), Positives = 77/89 (86%)
Frame = +2 / -1
Query: 263 NCSESARIRCLHFRHCSWPTCCECQTLTQGNQCAEPKCYRTWEHDKSGQIY*FKGIRQKD 442
NCSESARI CLHF HCSWPTCCECQTLTQ NQCAEPKCY TWE DKSGQ Y*F GI KD
Sbjct: 388 NCSESARIWCLHFSHCSWPTCCECQTLTQENQCAEPKCYHTWELDKSGQSY*F*GIC*KD 209
Query: 443 TASR*SCLQRY*CNCCSTVVAAQFGRTQA 529
A R*SCLQ Y*CNCCST+VAAQFGRTQA
Sbjct: 208 IAIR*SCLQGY*CNCCSTIVAAQFGRTQA 122
Score = 186 bits (400), Expect(2) = 1e-056
Identities = 78/88 (88%), Positives = 79/88 (89%)
Frame = +1 / -3
Query: 262 QLFRVCANPVSSLPPLQLANLL*MPNSHPRKPMRRAKMLPHLGT*QEWSDLLIQRHQAER 441
QLFRVCAN VSSL PLQLANLL*MPNSHPRKPMRRAKMLPHLGT*QEWS+LLI RH ER
Sbjct: 389 QLFRVCANLVSSLQPLQLANLL*MPNSHPRKPMRRAKMLPHLGT*QEWSELLILRHLLER 210
Query: 442 YCKPLILPSAILM*LLFHRCRRPVWTNT 525
YC PLIL S ILM*LLFH CRRPVWTNT
Sbjct: 209 YCNPLILSSGILM*LLFHHCRRPVWTNT 126
Score = 71.2 bits (149), Expect(2) = 6e-069
Identities = 29/33 (87%), Positives = 30/33 (90%)
Frame = +3 / -2
Query: 162 MLRWYNERVVWTDKQLNLKLLRKGVLTRIYTPM 260
+L YNERVVW DKQLNLKLLRKGVLTRIYTPM
Sbjct: 567 LLARYNERVVWNDKQLNLKLLRKGVLTRIYTPM 469
Score = 69.3 bits (145), Expect(3) = 2e-067
Identities = 28/29 (96%), Positives = 28/29 (96%)
Frame = -2 / +2
Query: 259 IGVYMRVSTPFLRSFKFSCLSVHTTRSLY 173
IGVYMRVSTPFLRSFKFSCLS HTTRSLY
Sbjct: 470 IGVYMRVSTPFLRSFKFSCLSFHTTRSLY 556
Score = 68.4 bits (143), Expect(2) = 6e-066
Identities = 26/32 (81%), Positives = 30/32 (93%)
Frame = -1 / +1
Query: 260 HWGVYASQHSFPQKL*VQLLIGPHDSFIVPAK 165
HWGVYASQHSFPQKL*VQL I PH++FIVP++
Sbjct: 469 HWGVYASQHSFPQKL*VQLFIVPHNTFIVPSQ 564
Score = 56.5 bits (117), Expect(2) = 1e-058
Identities = 25/29 (86%), Positives = 26/29 (89%)
Frame = +1 / -3
Query: 172 GTMNESCGPISS*T*SF*GKEC*LAYTPQ 258
GTMN CG I+S*T*SF*GKEC*LAYTPQ
Sbjct: 557 GTMNVLCGTINS*T*SF*GKEC*LAYTPQ 471
Score = 55.6 bits (115), Expect(2) = 1e-056
Identities = 25/29 (86%), Positives = 26/29 (89%)
Frame = +2 / -1
Query: 173 VQ*TSRVDR*AAELKASEERSADSHIHPN 259
VQ*T V+R* AELKASEERSADSHIHPN
Sbjct: 556 VQ*TCCVER*TAELKASEERSADSHIHPN 470
Score = 35.4 bits (71), Expect(2) = 1e-055
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -3 / +3
Query: 258 LGCICXXXXXXXXXXXXXAYRSTRLVHCT 172
LGCIC YRST+ VHCT
Sbjct: 471 LGCICESALLSSEALSSAVYRSTQHVHCT 557
Score = 28.6 bits (56), Expect(3) = 2e-067
Identities = 10/14 (71%), Positives = 14/14 (100%)
Frame = -2 / +2
Query: 610 SFLPFLRSLYAEQK 569
SFLPFLR+LYA+++
Sbjct: 41 SFLPFLRNLYAQRE 82
>gb|CF756274.1|CF756274 DSAF1_4_C09.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_4_C09_A011 3', mRNA sequence
Length = 559
Score = 188 bits (404), Expect(2) = 1e-058
Identities = 83/105 (79%), Positives = 90/105 (85%)
Frame = +3 / +3
Query: 297 TSAIAAGQPAVNAKLSPKETNAQSQNVTAPGNMTRVVRSTDSKASGRKILQAVDLAFSDT 476
TSAIAAGQPAVNAKLSPK+TNAQSQNVT PGN+TRVVR+TDSKAS RKILQ+VDL F DT
Sbjct: 3 TSAIAAGQPAVNAKLSPKKTNAQSQNVTTPGNLTRVVRATDSKASARKILQSVDLVFRDT 182
Query: 477 NVTAVPPLSPPSLDEHRHHSE**CHTYHIYIFCSAYKLLRKGRKE 611
+VTAVPPLSPPSLDEH+HHSE** + AYK LRKGRKE
Sbjct: 183 DVTAVPPLSPPSLDEHKHHSE**WSYDMFFFSRWAYKFLRKGRKE 317
Score = 181 bits (390), Expect(2) = 4e-054
Identities = 82/103 (79%), Positives = 85/103 (82%)
Frame = -1 / -3
Query: 611 FFSSFS*ELIRRAKNIYMIRMTLLFTMMPVFVQTGRRQRWNSSYISIAEGKINGLQYLSA 432
FFSSFS*E IR + I LLFT+M VFVQTGRRQ WNSSYISI E KINGLQYLS+
Sbjct: 317 FFSSFS*EFIRPTRKKEHII*PLLFTVMLVFVQTGRRQWWNSSYISIPEDKINGLQYLSS 138
Query: 431 *CL*ISRSDHSCHVPRCGNILALRIGFLG*EFGIHSRLASCNG 303
CL IS SDHSC VPRCGNILALRIGFLG*EFGIHSRLASCNG
Sbjct: 137 RCLRISSSDHSCQVPRCGNILALRIGFLG*EFGIHSRLASCNG 9
Score = 179 bits (385), Expect(2) = 2e-052
Identities = 78/106 (73%), Positives = 83/106 (78%)
Frame = -3 / -2
Query: 612 FLFFLFLGAYTPSKKXXXXXXXXXXXXDACVRPNWAATTVEQQLH*YR*RQDQRLAVSFC 433
FLFFLFLG YTP++K DACVRPNWAAT VEQQLH Y *RQDQR+A+SF
Sbjct: 318 FLFFLFLGIYTPNEKKRTYHMTIIIHCDACVRPNWAATMVEQQLHQYP*RQDQRIAISF* 139
Query: 432 LMPLNQ*I*PLLSCSQVR*HFGSAHWFPWVRVWHSQQVGQLQWRK* 295
MP NQ*+*PLLS SQV *HFGSAHWF WVRVWHSQQVGQLQW K*
Sbjct: 138 QMP*NQ*L*PLLSSSQVW*HFGSAHWFSWVRVWHSQQVGQLQWLK* 1
Score = 175 bits (376), Expect(4) = 3e-062
Identities = 74/84 (88%), Positives = 75/84 (89%)
Frame = -2 / -1
Query: 547 HYYSL*CLCSSKLGGDNGGTAVTLVSLKARSTACSIFLPDAFESVDLTTLVMFPGAVTFW 368
HYYSL*CLCSSKLGGDNGGTAVT VSLK RST C+IFL DA ESV LTTLV FPG VTFW
Sbjct: 253 HYYSL*CLCSSKLGGDNGGTAVTSVSLKTRSTDCNIFLADALESVALTTLVKFPGVVTFW 74
Query: 367 LCALVSLGESLAFTAGWPAAMAEV 296
LCALV LGESLAFTAGWPAAMAEV
Sbjct: 73 LCALVFLGESLAFTAGWPAAMAEV 2
Score = 168 bits (362), Expect(2) = 4e-052
Identities = 66/78 (84%), Positives = 67/78 (85%)
Frame = +2 / +2
Query: 296 HFRHCSWPTCCECQTLTQGNQCAEPKCYRTWEHDKSGQIY*FKGIRQKDTASR*SCLQRY 475
HF HCSWPTCCECQTLTQ NQCAEPKCY TWE DKSGQ Y*F GI KD A R*SCLQ Y
Sbjct: 2 HFSHCSWPTCCECQTLTQENQCAEPKCYHTWELDKSGQSY*F*GIC*KDIAIR*SCLQGY 181
Query: 476 *CNCCSTVVAAQFGRTQA 529
*CNCCST+VAAQFGRTQA
Sbjct: 182 *CNCCSTIVAAQFGRTQA 235
Score = 164 bits (352), Expect(2) = 3e-048
Identities = 68/77 (88%), Positives = 69/77 (89%)
Frame = +1 / +1
Query: 295 SLPPLQLANLL*MPNSHPRKPMRRAKMLPHLGT*QEWSDLLIQRHQAERYCKPLILPSAI 474
SL PLQLANLL*MPNSHPRKPMRRAKMLPHLGT*QEWS+LLI RH ERYC PLIL S I
Sbjct: 1 SLQPLQLANLL*MPNSHPRKPMRRAKMLPHLGT*QEWSELLILRHLLERYCNPLILSSGI 180
Query: 475 LM*LLFHRCRRPVWTNT 525
LM*LLFH CRRPVWTNT
Sbjct: 181 LM*LLFHHCRRPVWTNT 231
Score = 68.4 bits (143), Expect(4) = 3e-062
Identities = 25/39 (64%), Positives = 31/39 (79%)
Frame = -2 / -2
Query: 754 TIYQCCPHPHLTSIAKKDACQNFAAADCIKIDHPS*C*H 638
+I QC PHP++ I KK ACQN +AADCI++DHP *C*H
Sbjct: 462 SINQCYPHPNIPLITKKTACQNSSAADCIEVDHPC*C*H 346
Score = 60.6 bits (126), Expect(2) = 1e-058
Identities = 25/39 (64%), Positives = 31/39 (79%)
Frame = +2 / +1
Query: 635 EVLTSAWMVNFYAICGSEILAGVFFRDRSEMRVRATLID 751
+VLTSAWMVNFYAIC ILAG F ++ ++R+R TLID
Sbjct: 343 KVLTSAWMVNFYAICSR*ILAGSLFGNQRDIRMRITLID 459
Score = 57.9 bits (120), Expect(2) = 4e-052
Identities = 25/43 (58%), Positives = 29/43 (67%)
Frame = +3 / +2
Query: 633 EKC*HQLGWSIFMQSAAAKFWQASFFAIEVRCGCGQH**IVFY 761
++C*HQ GWS MQSAA +FWQA F I+ GCG H* I Y
Sbjct: 341 QRC*HQHGWSTSMQSAADEFWQAVFLVIKGIFGCG*H*LIDIY 469
Score = 51.9 bits (107), Expect(2) = 4e-054
Identities = 27/39 (69%), Positives = 30/39 (76%)
Frame = -3 / -3
Query: 753 LSINVARTRISLRSRKKTPARISLPQIA*KLTIQADVST 637
LSI+V R RISL K+ PA+I L QIA*KLTI ADVST
Sbjct: 461 LSISVIRIRISL*LPKRLPAKIHLLQIA*KLTIHADVST 345
Score = 49.6 bits (102), Expect(2) = 3e-048
Identities = 23/48 (47%), Positives = 31/48 (64%)
Frame = +1 / +3
Query: 604 EKKVTDIFVKRSANISLDGQFLCNLRQRNSGRRLFSRSK*DAGAGNID 747
++KV + + ANIS+DGQ LCNL+Q N GR+ F SK + A N D
Sbjct: 312 KEKVLTSSLNKGANISMDGQLLCNLQQMNFGRQSFW*SKGYSDADNTD 455
Score = 48.3 bits (99), Expect(2) = 2e-052
Identities = 24/48 (50%), Positives = 31/48 (64%)
Frame = -1 / -1
Query: 752 YLSMLPAPASHFDREKRRLPEFRCRRLHKN*PSKLMLALLLTKMSVTF 609
Y S+L A FD +K LP+F C RLH++*PS LMLA L ++ TF
Sbjct: 460 YQSVLSASEYPFDYQKDCLPKFICCRLHRS*PSMLMLAPLFSEDVSTF 317
Score = 28.6 bits (56), Expect(4) = 3e-062
Identities = 10/14 (71%), Positives = 14/14 (100%)
Frame = -2 / -1
Query: 610 SFLPFLRSLYAEQK 569
SFLPFLR+LYA+++
Sbjct: 316 SFLPFLRNLYAQRE 275
Score = 25.4 bits (49), Expect(4) = 3e-062
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -1 / -3
Query: 779 KYVLFPVKHYL 747
K VLFP+KHY+
Sbjct: 497 KTVLFPIKHYI 465
>gb|CN136110.1|CN136110 OX1_40_G10.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_40_G10_A002 5', mRNA sequence
Length = 792
Score = 213 bits (459), Expect(2) = 5e-055
Identities = 85/114 (74%), Positives = 96/114 (84%)
Frame = +3 / +1
Query: 3 AAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRAAFIIASTASEEEMLRWYNE 182
AA+LHYTYTKFSDLTSRRDRCGCKPTKEDVKRCF+L+FDR AFIIASTA+EEEM WY E
Sbjct: 91 AAILHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFILEFDRLAFIIASTATEEEMRNWYRE 270
Query: 183 RVVWTDKQLNLKLLRKGVLTRIYTPMTIVQSLRESGVFTSAIAAGQPAVNAKLS 344
VVWTDK NLKLLRKGVLTRIY PM I++ L+ESGVFT+A+ + + K S
Sbjct: 271 HVVWTDKDTNLKLLRKGVLTRIYAPMAIIRGLKESGVFTNAVTSAKAQSKTKSS 432
Score = 131 bits (281), Expect = 1e-029
Identities = 65/114 (57%), Positives = 74/114 (64%)
Frame = -2 / -2
Query: 343 ESLAFTAGWPAAMAEVKTPDSRRL*TIVIGVYMRVSTPFLRSFKFSCLSVHTTRSLYQRS 164
+ F + A VKTPDS I +G Y+RV TPFL+SFK LSVHTT S YQ
Sbjct: 431 DDFVFDCAFADVTALVKTPDSLSPRMIAMGAYIRVKTPFLKSFKLVSLSVHTTCSRYQFL 252
Query: 163 ISSSLAVDAIIKAALSKSNMKHLLTSSFVGLHPQRSRLDVKSENLVYV*CRTAA 2
ISSS+AVDAIIKA S S +KH TSS VGL P S L+V+SEN V V*CR AA
Sbjct: 251 ISSSVAVDAIIKAKRSNSKIKHRFTSSLVGLQPHLSLLEVRSENFV*V*CRIAA 90
Score = 23.1 bits (44), Expect(2) = 5e-055
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +3 / +1
Query: 459 LAFSDTNVTAVPPLSPPSLDE 521
L D A+PP+SPP E
Sbjct: 535 LEMVDAQEEAMPPMSPPGFLE 597
>gb|CN136023.1|CN136023 OX1_40_G10.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_40_G10_A002 3', mRNA sequence
Length = 833
Score = 171 bits (368), Expect(2) = 2e-042
Identities = 68/96 (70%), Positives = 78/96 (81%)
Frame = +3 / +1
Query: 57 DRCGCKPTKEDVKRCFMLDFDRAAFIIASTASEEEMLRWYNERVVWTDKQLNLKLLRKGV 236
DRCGCKPTKEDVKRCF+L+FDR AFIIASTA+EEEM WY E VVWTDK NLKLLRKGV
Sbjct: 1 DRCGCKPTKEDVKRCFILEFDRLAFIIASTATEEEMRNWYREHVVWTDKDTNLKLLRKGV 180
Query: 237 LTRIYTPMTIVQSLRESGVFTSAIAAGQPAVNAKLS 344
LTRIY PM I++ L+ESGVFT+A+ + + K S
Sbjct: 181 LTRIYAPMAIIRGLKESGVFTNAVTSAKAQSKTKSS 288
Score = 107 bits (228), Expect = 2e-022
Identities = 52/93 (55%), Positives = 59/93 (63%)
Frame = -2 / -1
Query: 343 ESLAFTAGWPAAMAEVKTPDSRRL*TIVIGVYMRVSTPFLRSFKFSCLSVHTTRSLYQRS 164
+ F + A VKTPDS I +G Y+RV TPFL+SFK LSVHTT S YQ
Sbjct: 287 DDFVFDCAFADVTALVKTPDSLSPRMIAMGAYIRVKTPFLKSFKLVSLSVHTTCSRYQFL 108
Query: 163 ISSSLAVDAIIKAALSKSNMKHLLTSSFVGLHP 65
ISSS+AVDAIIKA S S +KH TSS VGL P
Sbjct: 107 ISSSVAVDAIIKAKRSNSKIKHRFTSSLVGLQP 9
Score = 23.1 bits (44), Expect(2) = 2e-042
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +3 / +1
Query: 459 LAFSDTNVTAVPPLSPPSLDE 521
L D A+PP+SPP E
Sbjct: 391 LEMVDAQEEAMPPMSPPGFLE 453
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 958,533,165
Number of Sequences: 832831
Number of extensions: 13430568
Number of successful extensions: 83143
Number of sequences better than 1.0e-020: 5
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 24713245856
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)