TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3092809.2.1
(652 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG357669.1|BG357669 OV2_32_G10.g1_A002 Ovary 2 (OV2) Sor... 267 3e-083
gb|AW679848.1|AW679848 WS1_32_F10.g1_A002 Water-stressed 1 ... 267 1e-072
gb|CW457734.1|CW457734 fsbb001f203k22k0 Sorghum methylation... 247 9e-067
gb|CW241892.1|CW241892 104_701_11219026_116_37558_043 Sorgh... 171 2e-052
gb|CW303506.1|CW303506 104_788_11465276_116_35694_080 Sorgh... 188 4e-049
gb|CW241893.1|CW241893 104_701_11219026_148_37557_043 Sorgh... 185 4e-048
gb|CW199672.1|CW199672 104_624_11183637_116_37058_081 Sorgh... 119 2e-039
gb|BE592747.1|BE592747 WS1_95_H02.g1_A002 Water-stressed 1 ... 156 3e-037
gb|CW228649.1|CW228649 104_668_11206494_116_37254_021 Sorgh... 83 2e-029
gb|CW289715.1|CW289715 104_768_11412628_116_35546_004 Sorgh... 83 2e-029
gb|CW045261.1|CW045261 104_281_10509453_114_30236 Sorghum m... 80 1e-028
gb|CW092958.1|CW092958 104_455_10999481_116_33051_067 Sorgh... 118 2e-028
gb|CW051311.1|CW051311 104_291_10515176_114_30192 Sorghum m... 116 2e-027
gb|CW111876.1|CW111876 104_485_11104574_116_34538_055 Sorgh... 106 7e-026
gb|CW158850.1|CW158850 104_564_11149046_148_36401_051 Sorgh... 72 1e-025
gb|CW199665.1|CW199665 104_624_11183633_148_36850_065 Sorgh... 74 7e-025
gb|CW213991.1|CW213991 104_645_11191856_116_37041_020 Sorgh... 71 8e-024
gb|CW271598.1|CW271598 104_743_11403084_116_35339_034 Sorgh... 70 1e-023
gb|CW499023.1|CW499023 fsbb001f293j08f0 Sorghum methylation... 65 5e-023
gb|CW338135.1|CW338135 104_838_11484582_116_36125_025 Sorgh... 70 2e-021
gb|CW313125.1|CW313125 104_803_11471123_148_35790_044 Sorgh... 70 2e-021
gb|BG241362.1|BG241362 RHIZ2_51_B01.g1_A003 Rhizome2 (RHIZ2... 69 3e-021
gb|CW224533.1|CW224533 104_660_11203494_148_37445_017 Sorgh... 62 6e-021
gb|CW273536.1|CW273536 104_746_11403953_148_35366_077 Sorgh... 62 6e-021
>gb|BG357669.1|BG357669 OV2_32_G10.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 660
Score = 267 bits (577), Expect(3) = 3e-083
Identities = 113/120 (94%), Positives = 117/120 (97%)
Frame = +2 / +3
Query: 50 GPHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALSMPHLPQGARADDALKDF 229
GPH YTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALSMPHLPQGARADDAL DF
Sbjct: 198 GPHAYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALSMPHLPQGARADDALTDF 377
Query: 230 LAFVGGEANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVNNNLRAFED*L 409
LAFVGGEANLKGVDAMP+DVAQAVLYLASDEARYVSA+NLMVDGGFTAVN+NLR F+D*L
Sbjct: 378 LAFVGGEANLKGVDAMPKDVAQAVLYLASDEARYVSALNLMVDGGFTAVNHNLRPFDD*L 557
Score = 250 bits (540), Expect(2) = 3e-067
Identities = 109/136 (80%), Positives = 118/136 (86%)
Frame = -1 / -2
Query: 409 QLILKRPEVIVYGCEASVHHEVDRADVPRLVAGQVEHRLGDVLGHGVDALEVGLAADKGQ 230
+LI++ PEV+V GCEA+VHHEV+RADVPRLVAGQV HRLGDVLGHGVDALEVGLAAD+GQ
Sbjct: 557 ELIIEWPEVMVDGCEAAVHHEVERADVPRLVAGQV*HRLGDVLGHGVDALEVGLAADEGQ 378
Query: 229 EVLERVICARALGQVXXXXXXXXXXXXHAVDAHPVAAELRGDALGEPDHGVLGRRVDVRA 50
EV ERV+ ARALGQV HAVDAHPVAAELRGDALGEPDHGVLGRRV VRA
Sbjct: 377 EVRERVVGARALGQVRHGQRRGHGVGGHAVDAHPVAAELRGDALGEPDHGVLGRRVRVRA 198
Query: 49 RPADGAGHAGQRHDGA 2
+PADGAGHAGQRHDGA
Sbjct: 197 QPADGAGHAGQRHDGA 150
Score = 215 bits (465), Expect = 4e-055
Identities = 95/137 (69%), Positives = 97/137 (70%)
Frame = -2 / -3
Query: 411 LN*SSNALRLLFTAVKPPSTMRXXXXXXXXXXXXXXXXXXXXXSGMASTPLRLASPPTXX 232
L+*SSN LRL TAVKPPSTMR GMASTPLRLASPPT
Sbjct: 559 LS*SSNGLRLWLTAVKPPSTMRLSALTYLASSLARYSTAWATSLGMASTPLRLASPPTKA 380
Query: 231 XXXXXXXXXXAPWGRCGIDSAVGTA*GDTQLTRTPWRPSSAATLLVSPTTACLDAV*TCG 52
APWGRCG+DSAVGTA*GDTQLTRTPWRPSSAATLLVSPTTACLDAV CG
Sbjct: 379 RKSVSASSARAPWGRCGMDSAVGTA*GDTQLTRTPWRPSSAATLLVSPTTACLDAVYACG 200
Query: 51 PVPPMALATLASDTMEP 1
P PPMALATLASDTMEP
Sbjct: 199 PSPPMALATLASDTMEP 149
Score = 145 bits (312), Expect(4) = 3e-041
Identities = 59/65 (90%), Positives = 59/65 (90%)
Frame = +3 / +1
Query: 198 ARAQMTRSRTSWPLSAARPTSRASTPCPRTSPRRCSTWPATRRGTSARSTSWWTEASQP* 377
ARA TRSRTSWP SAARPTSRASTPCPRTSPRRC TWPATRRGTSARSTSWWT ASQP
Sbjct: 346 ARAPTTRSRTSWPSSAARPTSRASTPCPRTSPRRCYTWPATRRGTSARSTSWWTAASQPS 525
Query: 378 TITSG 392
TITSG
Sbjct: 526 TITSG 540
Score = 57.9 bits (120), Expect(3) = 3e-083
Identities = 22/24 (91%), Positives = 23/24 (95%)
Frame = +1 / +2
Query: 1 GLHRVAGQRGQRHRRDGPARLHGV 72
GLHRVAGQRGQRHRR GPAR+HGV
Sbjct: 149 GLHRVAGQRGQRHRRAGPARVHGV 220
Score = 34.5 bits (69), Expect(4) = 3e-041
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +3 / +1
Query: 3 APSCRWPAWP 32
APSCRWPAWP
Sbjct: 151 APSCRWPAWP 180
Score = 26.7 bits (52), Expect(2) = 3e-067
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -2 / -3
Query: 495 FISLAHTCHNSRRNSGNTPSQSQ 427
FISL TC++S+R S + S+++
Sbjct: 652 FISLTXTCYSSKRKSLKSSSRTR 584
Score = 24.4 bits (47), Expect(3) = 3e-083
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +1 / +2
Query: 469 VTSVCKTNK 495
VTSVCKTNK
Sbjct: 626 VTSVCKTNK 652
Score = 22.6 bits (43), Expect(4) = 3e-041
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3 / +1
Query: 453 YFFCCCDKCVQD**T 497
+FF C+KC D**T
Sbjct: 610 FFFLNCNKCX*D**T 654
Score = 22.6 bits (43), Expect(4) = 3e-041
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +1 / +2
Query: 139 QLRVPLCRAH 168
QLRVPL RAH
Sbjct: 287 QLRVPLRRAH 316
>gb|AW679848.1|AW679848 WS1_32_F10.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 582
Score = 267 bits (577), Expect(2) = 1e-072
Identities = 113/120 (94%), Positives = 117/120 (97%)
Frame = +2 / +3
Query: 50 GPHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALSMPHLPQGARADDALKDF 229
GPH YTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALSMPHLPQGARADDAL DF
Sbjct: 12 GPHAYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALSMPHLPQGARADDALTDF 191
Query: 230 LAFVGGEANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVNNNLRAFED*L 409
LAFVGGEANLKGVDAMP+DVAQAVLYLASDEARYVSA+NLMVDGGFTAVN+NLR F+D*L
Sbjct: 192 LAFVGGEANLKGVDAMPKDVAQAVLYLASDEARYVSALNLMVDGGFTAVNHNLRPFDD*L 371
Score = 216 bits (466), Expect(2) = 4e-058
Identities = 96/123 (78%), Positives = 105/123 (85%)
Frame = -1 / -2
Query: 409 QLILKRPEVIVYGCEASVHHEVDRADVPRLVAGQVEHRLGDVLGHGVDALEVGLAADKGQ 230
+LI++ PEV+V GCEA+VHHEV+RADVPRLVAGQV HRLGDVLGHGVDALEVGLAAD+GQ
Sbjct: 371 ELIIEWPEVMVDGCEAAVHHEVERADVPRLVAGQV*HRLGDVLGHGVDALEVGLAADEGQ 192
Query: 229 EVLERVICARALGQVXXXXXXXXXXXXHAVDAHPVAAELRGDALGEPDHGVLGRRVDVRA 50
EV ERV+ ARALGQV HAVDAHPVAAELRGDALGEPDHGVLGRRV VRA
Sbjct: 191 EVRERVVGARALGQVRHGQRRGHGVGGHAVDAHPVAAELRGDALGEPDHGVLGRRVRVRA 12
Query: 49 RPA 41
+PA
Sbjct: 11 QPA 3
Score = 187 bits (403), Expect(2) = 8e-049
Identities = 82/124 (66%), Positives = 84/124 (67%)
Frame = -2 / -3
Query: 411 LN*SSNALRLLFTAVKPPSTMRXXXXXXXXXXXXXXXXXXXXXSGMASTPLRLASPPTXX 232
L+*SSN LRL TAVKPPSTMR GMASTPLRLASPPT
Sbjct: 373 LS*SSNGLRLWLTAVKPPSTMRLSALTYLASSLARYSTAWATSLGMASTPLRLASPPTKA 194
Query: 231 XXXXXXXXXXAPWGRCGIDSAVGTA*GDTQLTRTPWRPSSAATLLVSPTTACLDAV*TCG 52
APWGRCG+DSAVGTA*GDTQLTRTPWRPSSAATLLVSPTTACLDAV CG
Sbjct: 193 RKSVSASSARAPWGRCGMDSAVGTA*GDTQLTRTPWRPSSAATLLVSPTTACLDAVYACG 14
Query: 51 PVPP 40
P PP
Sbjct: 13 PSPP 2
Score = 145 bits (312), Expect(4) = 3e-039
Identities = 59/65 (90%), Positives = 59/65 (90%)
Frame = +3 / +1
Query: 198 ARAQMTRSRTSWPLSAARPTSRASTPCPRTSPRRCSTWPATRRGTSARSTSWWTEASQP* 377
ARA TRSRTSWP SAARPTSRASTPCPRTSPRRC TWPATRRGTSARSTSWWT ASQP
Sbjct: 160 ARAPTTRSRTSWPSSAARPTSRASTPCPRTSPRRCYTWPATRRGTSARSTSWWTAASQPS 339
Query: 378 TITSG 392
TITSG
Sbjct: 340 TITSG 354
Score = 29.9 bits (59), Expect(2) = 4e-058
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = -2 / -3
Query: 501 LRFISLAHTCHNSRRNSGNTPSQSQ 427
+RFISL TC++S+R S + S+++
Sbjct: 472 MRFISLTDTCYSSKRKSLKSSSRTR 398
Score = 27.6 bits (54), Expect(2) = 1e-072
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1 / +2
Query: 469 VTSVCKTNKP 498
VTSVCKTNKP
Sbjct: 440 VTSVCKTNKP 469
Score = 27.6 bits (54), Expect(2) = 8e-049
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -3 / -1
Query: 500 CGLLVLHTLVTTAEE 456
CGLLVL TLVT +E
Sbjct: 471 CGLLVLQTLVTVQKE 427
Score = 25.4 bits (49), Expect(4) = 3e-039
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3 / +1
Query: 453 YFFCCCDKCVQD**TA 500
+FF C+KC+ D**TA
Sbjct: 424 FFFLNCNKCL*D**TA 471
Score = 25.4 bits (49), Expect(4) = 3e-039
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +1 / +2
Query: 40 RRDGPARLHGV 72
RR GPAR+HGV
Sbjct: 2 RRAGPARVHGV 34
Score = 22.6 bits (43), Expect(4) = 3e-039
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +1 / +2
Query: 139 QLRVPLCRAH 168
QLRVPL RAH
Sbjct: 101 QLRVPLRRAH 130
>gb|CW457734.1|CW457734 fsbb001f203k22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f203k22, DNA
sequence
Length = 502
Score = 247 bits (534), Expect(2) = 9e-067
Identities = 107/116 (92%), Positives = 111/116 (95%)
Frame = +2 / -3
Query: 62 YTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALSMPHLPQGARADDALKDFLAFV 241
YTASKHAVVGLTKSVAAELGRH VRVNCVSPYAVPTALS PHLPQGARA DAL DFLAFV
Sbjct: 500 YTASKHAVVGLTKSVAAELGRHRVRVNCVSPYAVPTALSTPHLPQGARAADALTDFLAFV 321
Query: 242 GGEANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVNNNLRAFED*L 409
GGEANLKGVDAMP+DVAQAVLYLASDEARYVSA+NLMVDGGFTAVN+NLR F+D*L
Sbjct: 320 GGEANLKGVDAMPKDVAQAVLYLASDEARYVSALNLMVDGGFTAVNHNLRPFDD*L 153
Score = 202 bits (436), Expect(2) = 5e-054
Identities = 91/116 (78%), Positives = 98/116 (84%)
Frame = -1 / +3
Query: 409 QLILKRPEVIVYGCEASVHHEVDRADVPRLVAGQVEHRLGDVLGHGVDALEVGLAADKGQ 230
+LI++ PEV+V GCEA+VHHEV+RADVPRLVAGQV HRLGDVLGHGVDALEVGLAAD+GQ
Sbjct: 153 ELIIEWPEVMVDGCEAAVHHEVERADVPRLVAGQV*HRLGDVLGHGVDALEVGLAADEGQ 332
Query: 229 EVLERVICARALGQVXXXXXXXXXXXXHAVDAHPVAAELRGDALGEPDHGVLGRRV 62
EV ERV ARALGQV HAVDAHPVAAELRGDALGEPDHGVLGRRV
Sbjct: 333 EVRERVGGARALGQVRRGQRRGHGVGGHAVDAHPVAAELRGDALGEPDHGVLGRRV 500
Score = 170 bits (366), Expect(2) = 1e-043
Identities = 76/116 (65%), Positives = 78/116 (67%)
Frame = -2 / +1
Query: 411 LN*SSNALRLLFTAVKPPSTMRXXXXXXXXXXXXXXXXXXXXXSGMASTPLRLASPPTXX 232
L+*SSN LRL TAVKPPSTMR GMASTPLRLASPPT
Sbjct: 151 LS*SSNGLRLWLTAVKPPSTMRLSALTYLASSLARYSTAWATSLGMASTPLRLASPPTKA 330
Query: 231 XXXXXXXXXXAPWGRCGIDSAVGTA*GDTQLTRTPWRPSSAATLLVSPTTACLDAV 64
APWGRCG+DSAVGTA*GDTQLTRT WRPSSAATLLVSPTTACLDAV
Sbjct: 331 RKSVSASAARAPWGRCGVDSAVGTA*GDTQLTRTRWRPSSAATLLVSPTTACLDAV 498
Score = 145 bits (311), Expect(3) = 7e-037
Identities = 59/65 (90%), Positives = 59/65 (90%)
Frame = +3 / -1
Query: 198 ARAQMTRSRTSWPLSAARPTSRASTPCPRTSPRRCSTWPATRRGTSARSTSWWTEASQP* 377
ARA TRSRTSWP SAARPTSRASTPCPRTSPRRC TWPATRRGTSARSTSWWT ASQP
Sbjct: 364 ARAPPTRSRTSWPSSAARPTSRASTPCPRTSPRRCYTWPATRRGTSARSTSWWTAASQPS 185
Query: 378 TITSG 392
TITSG
Sbjct: 184 TITSG 170
Score = 29.9 bits (59), Expect(2) = 5e-054
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = -2 / +1
Query: 501 LRFISLAHTCHNSRRNSGNTPSQSQ 427
+RFISL TC++S+R S + S+++
Sbjct: 52 MRFISLTDTCYSSKRKSLKSSSRTR 126
Score = 27.6 bits (54), Expect(2) = 9e-067
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1 / -2
Query: 469 VTSVCKTNKP 498
VTSVCKTNKP
Sbjct: 84 VTSVCKTNKP 55
Score = 27.6 bits (54), Expect(2) = 1e-043
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -3 / +2
Query: 500 CGLLVLHTLVTTAEE 456
CGLLVL TLVT +E
Sbjct: 53 CGLLVLQTLVTVQKE 97
Score = 25.4 bits (49), Expect(3) = 7e-037
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3 / -1
Query: 453 YFFCCCDKCVQD**TA 500
+FF C+KC+ D**TA
Sbjct: 100 FFFLNCNKCL*D**TA 53
Score = 22.6 bits (43), Expect(3) = 7e-037
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +1 / -2
Query: 139 QLRVPLCRAH 168
QLRVPL RAH
Sbjct: 423 QLRVPLRRAH 394
>gb|CW241892.1|CW241892 104_701_11219026_116_37558_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11219026, DNA
sequence
Length = 409
Score = 171 bits (368), Expect = 9e-042
Identities = 71/89 (79%), Positives = 73/89 (82%)
Frame = -2 / -2
Query: 267 TPLRLASPPTXXXXXXXXXXXXAPWGRCGIDSAVGTA*GDTQLTRTPWRPSSAATLLVSP 88
TPLR+ SPPT APWGRCG+DSAVGTA*GDTQLTRTPWRPSSAATLLVSP
Sbjct: 390 TPLRITSPPTKARKSVSASSARAPWGRCGMDSAVGTA*GDTQLTRTPWRPSSAATLLVSP 211
Query: 87 TTACLDAV*TCGPVPPMALATLASDTMEP 1
TTACLDAV CGP PPMALATLASDTMEP
Sbjct: 210 TTACLDAVYACGPSPPMALATLASDTMEP 124
Score = 169 bits (364), Expect(2) = 2e-052
Identities = 70/79 (88%), Positives = 73/79 (92%)
Frame = +2 / +2
Query: 50 GPHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALSMPHLPQGARADDALKDF 229
GPH YTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALSMPHLPQGARADDAL DF
Sbjct: 173 GPHAYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALSMPHLPQGARADDALTDF 352
Query: 230 LAFVGGEANLKGVDAMPED 286
LAFVGGE LKGV+++ D
Sbjct: 353 LAFVGGEVILKGVNSLSND 409
Score = 162 bits (348), Expect = 5e-039
Identities = 73/95 (76%), Positives = 77/95 (81%)
Frame = -1 / -1
Query: 286 VLGHGVDALEVGLAADKGQEVLERVICARALGQVXXXXXXXXXXXXHAVDAHPVAAELRG 107
V+G GVDALE LAAD+GQEV ERV+ ARALGQV HAVDAHPVAAELRG
Sbjct: 409 VIGQGVDALEDHLAADEGQEVRERVVGARALGQVRHGQRRGHGVGGHAVDAHPVAAELRG 230
Query: 106 DALGEPDHGVLGRRVDVRARPADGAGHAGQRHDGA 2
DALGEPDHGVLGRRV VRA+PADGAGHAGQRHDGA
Sbjct: 229 DALGEPDHGVLGRRVRVRAQPADGAGHAGQRHDGA 125
Score = 57.9 bits (120), Expect(2) = 2e-052
Identities = 22/24 (91%), Positives = 23/24 (95%)
Frame = +1 / +1
Query: 1 GLHRVAGQRGQRHRRDGPARLHGV 72
GLHRVAGQRGQRHRR GPAR+HGV
Sbjct: 124 GLHRVAGQRGQRHRRAGPARVHGV 195
>gb|CW303506.1|CW303506 104_788_11465276_116_35694_080 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11465276, DNA
sequence
Length = 571
Score = 188 bits (405), Expect(2) = 4e-049
Identities = 80/86 (93%), Positives = 84/86 (97%)
Frame = +2 / -1
Query: 152 PYAVPTALSMPHLPQGARADDALKDFLAFVGGEANLKGVDAMPEDVAQAVLYLASDEARY 331
PYAVPTALSMPHLPQGARADDAL DFLAFVGGEANLKGVDAMP+DVAQAVLYLASDEARY
Sbjct: 571 PYAVPTALSMPHLPQGARADDALTDFLAFVGGEANLKGVDAMPKDVAQAVLYLASDEARY 392
Query: 332 VSAVNLMVDGGFTAVNNNLRAFED*L 409
VSA+NLMVDGGFTAVN+NLR F+D*L
Sbjct: 391 VSALNLMVDGGFTAVNHNLRPFDD*L 314
Score = 145 bits (312), Expect(2) = 1e-035
Identities = 59/65 (90%), Positives = 59/65 (90%)
Frame = +3 / -2
Query: 198 ARAQMTRSRTSWPLSAARPTSRASTPCPRTSPRRCSTWPATRRGTSARSTSWWTEASQP* 377
ARA TRSRTSWP SAARPTSRASTPCPRTSPRRC TWPATRRGTSARSTSWWT ASQP
Sbjct: 525 ARAPTTRSRTSWPSSAARPTSRASTPCPRTSPRRCYTWPATRRGTSARSTSWWTAASQPS 346
Query: 378 TITSG 392
TITSG
Sbjct: 345 TITSG 331
Score = 145 bits (311), Expect(3) = 1e-042
Identities = 62/75 (82%), Positives = 70/75 (93%)
Frame = -1 / +2
Query: 409 QLILKRPEVIVYGCEASVHHEVDRADVPRLVAGQVEHRLGDVLGHGVDALEVGLAADKGQ 230
+LI++ PEV+V GCEA+VHHEV+RADVPRLVAGQV HRLGDVLGHGVDALEVGLAAD+GQ
Sbjct: 314 ELIIEWPEVMVDGCEAAVHHEVERADVPRLVAGQV*HRLGDVLGHGVDALEVGLAADEGQ 493
Query: 229 EVLERVICARALGQV 185
EV ERV+ ARALGQV
Sbjct: 494 EVRERVVGARALGQV 538
Score = 102 bits (217), Expect(2) = 2e-023
Identities = 47/86 (54%), Positives = 49/86 (56%)
Frame = -2 / +3
Query: 411 LN*SSNALRLLFTAVKPPSTMRXXXXXXXXXXXXXXXXXXXXXSGMASTPLRLASPPTXX 232
L+*SSN LRL TAVKPPSTMR GMASTPLRLASPPT
Sbjct: 312 LS*SSNGLRLWLTAVKPPSTMRLSALTYLASSLARYSTAWATSLGMASTPLRLASPPTKA 491
Query: 231 XXXXXXXXXXAPWGRCGIDSAVGTA* 154
APWGRCG+DSAVGTA*
Sbjct: 492 RKSVSASSARAPWGRCGMDSAVGTA* 569
Score = 38.6 bits (78), Expect(3) = 1e-042
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = -3 / +1
Query: 206 RARPGAGAASTAPWAR 159
RARPGAGAA TAPWAR
Sbjct: 517 RARPGAGAAWTAPWAR 564
Score = 28.6 bits (56), Expect(3) = 1e-042
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -2 / +3
Query: 501 LRFISLAHTCHNSRRNS 451
+RFISL TC++S+R S
Sbjct: 213 MRFISLTDTCYSSKRKS 263
Score = 27.6 bits (54), Expect(2) = 4e-049
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1 / -3
Query: 469 VTSVCKTNKP 498
VTSVCKTNKP
Sbjct: 245 VTSVCKTNKP 216
Score = 27.6 bits (54), Expect(2) = 2e-023
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -3 / +1
Query: 500 CGLLVLHTLVTTAEE 456
CGLLVL TLVT +E
Sbjct: 214 CGLLVLQTLVTVQKE 258
Score = 25.4 bits (49), Expect(2) = 1e-035
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3 / -2
Query: 453 YFFCCCDKCVQD**TA 500
+FF C+KC+ D**TA
Sbjct: 261 FFFLNCNKCL*D**TA 214
>gb|CW241893.1|CW241893 104_701_11219026_148_37557_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11219026, DNA
sequence
Length = 649
Score = 185 bits (398), Expect(2) = 4e-048
Identities = 79/85 (92%), Positives = 83/85 (97%)
Frame = +2 / -1
Query: 155 YAVPTALSMPHLPQGARADDALKDFLAFVGGEANLKGVDAMPEDVAQAVLYLASDEARYV 334
YAVPTALSMPHLPQGARADDAL DFLAFVGGEANLKGVDAMP+DVAQAVLYLASDEARYV
Sbjct: 649 YAVPTALSMPHLPQGARADDALTDFLAFVGGEANLKGVDAMPKDVAQAVLYLASDEARYV 470
Query: 335 SAVNLMVDGGFTAVNNNLRAFED*L 409
SA+NLMVDGGFTAVN+NLR F+D*L
Sbjct: 469 SALNLMVDGGFTAVNHNLRPFDD*L 395
Score = 145 bits (312), Expect(2) = 1e-035
Identities = 59/65 (90%), Positives = 59/65 (90%)
Frame = +3 / -2
Query: 198 ARAQMTRSRTSWPLSAARPTSRASTPCPRTSPRRCSTWPATRRGTSARSTSWWTEASQP* 377
ARA TRSRTSWP SAARPTSRASTPCPRTSPRRC TWPATRRGTSARSTSWWT ASQP
Sbjct: 606 ARAPTTRSRTSWPSSAARPTSRASTPCPRTSPRRCYTWPATRRGTSARSTSWWTAASQPS 427
Query: 378 TITSG 392
TITSG
Sbjct: 426 TITSG 412
Score = 145 bits (311), Expect(3) = 5e-043
Identities = 62/75 (82%), Positives = 70/75 (93%)
Frame = -1 / +2
Query: 409 QLILKRPEVIVYGCEASVHHEVDRADVPRLVAGQVEHRLGDVLGHGVDALEVGLAADKGQ 230
+LI++ PEV+V GCEA+VHHEV+RADVPRLVAGQV HRLGDVLGHGVDALEVGLAAD+GQ
Sbjct: 395 ELIIEWPEVMVDGCEAAVHHEVERADVPRLVAGQV*HRLGDVLGHGVDALEVGLAADEGQ 574
Query: 229 EVLERVICARALGQV 185
EV ERV+ ARALGQV
Sbjct: 575 EVRERVVGARALGQV 619
Score = 101 bits (216), Expect(2) = 3e-023
Identities = 46/85 (54%), Positives = 48/85 (56%)
Frame = -2 / +3
Query: 411 LN*SSNALRLLFTAVKPPSTMRXXXXXXXXXXXXXXXXXXXXXSGMASTPLRLASPPTXX 232
L+*SSN LRL TAVKPPSTMR GMASTPLRLASPPT
Sbjct: 393 LS*SSNGLRLWLTAVKPPSTMRLSALTYLASSLARYSTAWATSLGMASTPLRLASPPTKA 572
Query: 231 XXXXXXXXXXAPWGRCGIDSAVGTA 157
APWGRCG+DSAVGTA
Sbjct: 573 RKSVSASSARAPWGRCGMDSAVGTA 647
Score = 38.6 bits (78), Expect(3) = 5e-043
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = -3 / +1
Query: 206 RARPGAGAASTAPWAR 159
RARPGAGAA TAPWAR
Sbjct: 598 RARPGAGAAWTAPWAR 645
Score = 29.9 bits (59), Expect(3) = 5e-043
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = -2 / +3
Query: 501 LRFISLAHTCHNSRRNSGNTPSQSQ 427
+RFISL TC++S+R S + S+++
Sbjct: 294 MRFISLTDTCYSSKRKSLKSSSRTR 368
Score = 27.6 bits (54), Expect(2) = 4e-048
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1 / -3
Query: 469 VTSVCKTNKP 498
VTSVCKTNKP
Sbjct: 326 VTSVCKTNKP 297
Score = 27.6 bits (54), Expect(2) = 3e-023
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -3 / +1
Query: 500 CGLLVLHTLVTTAEE 456
CGLLVL TLVT +E
Sbjct: 295 CGLLVLQTLVTVQKE 339
Score = 25.4 bits (49), Expect(2) = 1e-035
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3 / -2
Query: 453 YFFCCCDKCVQD**TA 500
+FF C+KC+ D**TA
Sbjct: 342 FFFLNCNKCL*D**TA 295
>gb|CW199672.1|CW199672 104_624_11183637_116_37058_081 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11183637, DNA
sequence
Length = 419
Score = 119 bits (254), Expect(2) = 2e-036
Identities = 51/60 (85%), Positives = 52/60 (86%)
Frame = -2 / +2
Query: 198 PWGRCGIDSAVGTA*GDTQLTRTPWRPSSAATLLVSPTTACLDAV*TCGPVPPMALATLA 19
P CG+DSAVGTA*GDT LTRTPWR SSAATLLVSPTTACLDAV CGP PPMALATLA
Sbjct: 80 PGAWCGMDSAVGTA*GDTHLTRTPWRTSSAATLLVSPTTACLDAVYACGPRPPMALATLA 259
Score = 105 bits (224), Expect(3) = 2e-039
Identities = 44/50 (88%), Positives = 44/50 (88%)
Frame = +2 / -3
Query: 50 GPHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALSMPHLPQG 199
GPH YTASKHAVVGLTKSVAAEL RHGVRV CVSPYAVPTALSMPH G
Sbjct: 228 GPHAYTASKHAVVGLTKSVAAELVRHGVRVKCVSPYAVPTALSMPHHAPG 79
Score = 88.1 bits (186), Expect(3) = 4e-024
Identities = 36/42 (85%), Positives = 38/42 (90%)
Frame = -1 / +1
Query: 145 AVDAHPVAAELRGDALGEPDHGVLGRRVDVRARPADGAGHAG 20
A DAHPVA ELRGDALGEPDHGVLGRRV VRA+ +DGAGHAG
Sbjct: 133 AFDAHPVADELRGDALGEPDHGVLGRRVRVRAQTSDGAGHAG 258
Score = 54.7 bits (113), Expect(2) = 2e-036
Identities = 22/28 (78%), Positives = 24/28 (85%)
Frame = -1 / +3
Query: 274 GVDALEVGLAADKGQEVLERVICARALG 191
GVD LEVGL AD+GQEV ERV+C RALG
Sbjct: 3 GVDTLEVGLVADEGQEVRERVVCTRALG 86
Score = 51.9 bits (107), Expect(3) = 2e-039
Identities = 21/26 (80%), Positives = 21/26 (80%)
Frame = +3 / -2
Query: 198 ARAQMTRSRTSWPLSAARPTSRASTP 275
AR Q TRSRTSWP SA RPTSR STP
Sbjct: 79 ARVQTTRSRTSWPSSATRPTSRVSTP 2
Score = 44.6 bits (91), Expect(3) = 2e-039
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +1 / -2
Query: 19 GQRGQRHRRDGPARLHGV 72
GQRGQRHRR GPAR+HGV
Sbjct: 259 GQRGQRHRRSGPARVHGV 206
Score = 35.4 bits (71), Expect(3) = 4e-024
Identities = 15/29 (51%), Positives = 15/29 (51%)
Frame = -2 / +1
Query: 276 MASTPLRLASPPTXXXXXXXXXXXXAPWG 190
M STPLRLAS PT APWG
Sbjct: 1 MVSTPLRLASSPTRARKFVSASSARAPWG 87
Score = 26.3 bits (51), Expect(3) = 4e-024
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = -3 / +3
Query: 194 GAGAASTAPWAR 159
G GAA TAPWAR
Sbjct: 84 GHGAAWTAPWAR 119
>gb|BE592747.1|BE592747 WS1_95_H02.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 268
Score = 156 bits (335), Expect = 3e-037
Identities = 67/73 (91%), Positives = 71/73 (97%)
Frame = +2 / +1
Query: 191 PQGARADDALKDFLAFVGGEANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFT 370
PQGARADDAL DFLAFVGGEANLKGVDAMP+DVAQAVLYLASDEARYVSA+NLMVDGGFT
Sbjct: 1 PQGARADDALTDFLAFVGGEANLKGVDAMPKDVAQAVLYLASDEARYVSALNLMVDGGFT 180
Query: 371 AVNNNLRAFED*L 409
AVN+NLR F+D*L
Sbjct: 181 AVNHNLRPFDD*L 219
Score = 145 bits (312), Expect = 5e-034
Identities = 59/65 (90%), Positives = 59/65 (90%)
Frame = +3 / +2
Query: 198 ARAQMTRSRTSWPLSAARPTSRASTPCPRTSPRRCSTWPATRRGTSARSTSWWTEASQP* 377
ARA TRSRTSWP SAARPTSRASTPCPRTSPRRC TWPATRRGTSARSTSWWT ASQP
Sbjct: 8 ARAPTTRSRTSWPSSAARPTSRASTPCPRTSPRRCYTWPATRRGTSARSTSWWTAASQPS 187
Query: 378 TITSG 392
TITSG
Sbjct: 188 TITSG 202
Score = 141 bits (302), Expect = 1e-032
Identities = 60/73 (82%), Positives = 68/73 (93%)
Frame = -1 / -2
Query: 409 QLILKRPEVIVYGCEASVHHEVDRADVPRLVAGQVEHRLGDVLGHGVDALEVGLAADKGQ 230
+LI++ PEV+V GCEA+VHHEV+RADVPRLVAGQV HRLGDVLGHGVDALEVGLAAD+GQ
Sbjct: 219 ELIIEWPEVMVDGCEAAVHHEVERADVPRLVAGQV*HRLGDVLGHGVDALEVGLAADEGQ 40
Query: 229 EVLERVICARALG 191
EV ERV+ ARALG
Sbjct: 39 EVRERVVGARALG 1
>gb|CW228649.1|CW228649 104_668_11206494_116_37254_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11206494, DNA
sequence
Length = 599
Score = 82.6 bits (174), Expect(2) = 2e-029
Identities = 32/50 (64%), Positives = 38/50 (76%)
Frame = +2 / -1
Query: 50 GPHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALSMPHLPQG 199
GPH YTASKHA+VGLTK+ A ELG HG+RVNCVSP+ V T + + QG
Sbjct: 530 GPHAYTASKHAIVGLTKNAACELGAHGIRVNCVSPFGVATPMLINAWRQG 381
Score = 72.1 bits (151), Expect(2) = 4e-021
Identities = 31/52 (59%), Positives = 34/52 (65%)
Frame = -2 / +1
Query: 198 PWGRCGIDSAVGTA*GDTQLTRTPWRPSSAATLLVSPTTACLDAV*TCGPVP 43
PW + + V T GDTQLTR P PSS A LVSPT ACL+AV* CGP P
Sbjct: 382 PWRQALMSMGVATPKGDTQLTRMPCAPSSQAAFLVSPTMACLEAV*ACGPRP 537
Score = 67.5 bits (141), Expect(2) = 2e-029
Identities = 29/59 (49%), Positives = 39/59 (66%)
Frame = +2 / -1
Query: 206 ADDALKDFLAFVGGEANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVNN 382
+D+ ++ V G A LKG P D+A+AVL+LASDE+RY+S NL+VDGG T N
Sbjct: 329 SDEEVEKMEEVVRGLATLKGPTLRPRDIAEAVLFLASDESRYISGHNLVVDGGVTTSRN 153
Score = 50.1 bits (103), Expect(2) = 4e-021
Identities = 25/45 (55%), Positives = 28/45 (62%)
Frame = -1 / +3
Query: 373 GCEASVHHEVDRADVPRLVAGQVEHRLGDVLGHGVDALEVGLAAD 239
G +A+VH EV D+ LVAGQ EHRLGDV G ALE G D
Sbjct: 162 GGDAAVHDEVVAGDIS*LVAGQEEHRLGDVPGSQRGALERGQPPD 296
>gb|CW289715.1|CW289715 104_768_11412628_116_35546_004 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11412628, DNA
sequence
Length = 516
Score = 82.6 bits (174), Expect(2) = 2e-029
Identities = 32/50 (64%), Positives = 38/50 (76%)
Frame = +2 / -1
Query: 50 GPHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALSMPHLPQG 199
GPH YTASKHA+VGLTK+ A ELG HG+RVNCVSP+ V T + + QG
Sbjct: 483 GPHAYTASKHAIVGLTKNAACELGAHGIRVNCVSPFGVATPMLINAWRQG 334
Score = 81.3 bits (171), Expect(2) = 8e-024
Identities = 36/60 (60%), Positives = 39/60 (65%)
Frame = -2 / +2
Query: 198 PWGRCGIDSAVGTA*GDTQLTRTPWRPSSAATLLVSPTTACLDAV*TCGPVPPMALATLA 19
PW + + V T GDTQLTR P PSS A LVSPT ACL+AV* CGP PP ATLA
Sbjct: 335 PWRQALMSMGVATPKGDTQLTRMPCAPSSQAAFLVSPTMACLEAV*ACGPRPPSTPATLA 514
Score = 67.5 bits (141), Expect(2) = 2e-029
Identities = 29/59 (49%), Positives = 39/59 (66%)
Frame = +2 / -1
Query: 206 ADDALKDFLAFVGGEANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVNN 382
+D+ ++ V G A LKG P D+A+AVL+LASDE+RY+S NL+VDGG T N
Sbjct: 282 SDEEVEKMEEVVRGLATLKGPTLRPRDIAEAVLFLASDESRYISGHNLVVDGGVTTSRN 106
Score = 50.1 bits (103), Expect(2) = 8e-024
Identities = 25/45 (55%), Positives = 28/45 (62%)
Frame = -1 / +1
Query: 373 GCEASVHHEVDRADVPRLVAGQVEHRLGDVLGHGVDALEVGLAAD 239
G +A+VH EV D+ LVAGQ EHRLGDV G ALE G D
Sbjct: 115 GGDAAVHDEVVAGDIS*LVAGQEEHRLGDVPGSQRGALERGQPPD 249
>gb|CW045261.1|CW045261 104_281_10509453_114_30236 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10509453, DNA
sequence
Length = 505
Score = 79.9 bits (168), Expect(2) = 1e-028
Identities = 31/49 (63%), Positives = 37/49 (75%)
Frame = +2 / -2
Query: 53 PHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALSMPHLPQG 199
PH YTASKHA+VGLTK+ A ELG HG+RVNCVSP+ V T + + QG
Sbjct: 504 PHAYTASKHAIVGLTKNAACELGAHGIRVNCVSPFGVATPMLINAWRQG 358
Score = 67.5 bits (141), Expect(2) = 1e-028
Identities = 29/59 (49%), Positives = 39/59 (66%)
Frame = +2 / -2
Query: 206 ADDALKDFLAFVGGEANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVNN 382
+D+ ++ V G A LKG P D+A+AVL+LASDE+RY+S NL+VDGG T N
Sbjct: 306 SDEEVEKMEEVVRGLATLKGPTLRPRDIAEAVLFLASDESRYISGHNLVVDGGVTTSRN 130
>gb|CW092958.1|CW092958 104_455_10999481_116_33051_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10999481, DNA
sequence
Length = 327
Score = 118 bits (253), Expect(2) = 2e-028
Identities = 47/50 (94%), Positives = 47/50 (94%)
Frame = +3 / -1
Query: 243 AARPTSRASTPCPRTSPRRCSTWPATRRGTSARSTSWWTEASQP*TITSG 392
AARPTSRASTPCPRTSPRRC TWPATRRGTSARSTSWWT ASQP TITSG
Sbjct: 327 AARPTSRASTPCPRTSPRRCYTWPATRRGTSARSTSWWTAASQPSTITSG 178
Score = 116 bits (249), Expect(2) = 3e-027
Identities = 50/55 (90%), Positives = 54/55 (98%)
Frame = +2 / -3
Query: 245 GEANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVNNNLRAFED*L 409
GEANLKGVDAMP+DVAQAVLYLASDEARYVSA+NLMVDGGFTAVN+NLR F+D*L
Sbjct: 325 GEANLKGVDAMPKDVAQAVLYLASDEARYVSALNLMVDGGFTAVNHNLRPFDD*L 161
Score = 111 bits (236), Expect(3) = 3e-027
Identities = 46/55 (83%), Positives = 52/55 (94%)
Frame = -1 / +2
Query: 409 QLILKRPEVIVYGCEASVHHEVDRADVPRLVAGQVEHRLGDVLGHGVDALEVGLA 245
+LI++ PEV+V GCEA+VHHEV+RADVPRLVAGQV HRLGDVLGHGVDALEVGLA
Sbjct: 161 ELIIEWPEVMVDGCEAAVHHEVERADVPRLVAGQV*HRLGDVLGHGVDALEVGLA 325
Score = 29.9 bits (59), Expect(3) = 3e-027
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = -2 / +3
Query: 501 LRFISLAHTCHNSRRNSGNTPSQSQ 427
+RFISL TC++S+R S + S+++
Sbjct: 60 MRFISLTDTCYSSKRKSLKSSSRTR 134
Score = 27.6 bits (54), Expect(2) = 2e-028
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1 / -2
Query: 469 VTSVCKTNKP 498
VTSVCKTNKP
Sbjct: 92 VTSVCKTNKP 63
Score = 25.4 bits (49), Expect(2) = 3e-027
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3 / -1
Query: 453 YFFCCCDKCVQD**TA 500
+FF C+KC+ D**TA
Sbjct: 108 FFFLNCNKCL*D**TA 61
Score = 18.5 bits (34), Expect(3) = 3e-027
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = -3 / +1
Query: 554 NSAMILGMFNHL 519
NSA+ L M NH+
Sbjct: 22 NSALSLRMSNHV 57
>gb|CW051311.1|CW051311 104_291_10515176_114_30192 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515176, DNA
sequence
Length = 308
Score = 116 bits (248), Expect = 3e-025
Identities = 48/51 (94%), Positives = 48/51 (94%)
Frame = -2 / -3
Query: 153 GDTQLTRTPWRPSSAATLLVSPTTACLDAV*TCGPVPPMALATLASDTMEP 1
GDTQLTRTPWRPSSAATLLVSPTTACLDAV CGP PPMALATLASDTMEP
Sbjct: 303 GDTQLTRTPWRPSSAATLLVSPTTACLDAVYACGPSPPMALATLASDTMEP 151
Score = 113 bits (242), Expect = 2e-024
Identities = 46/48 (95%), Positives = 47/48 (97%)
Frame = -1 / -2
Query: 145 AVDAHPVAAELRGDALGEPDHGVLGRRVDVRARPADGAGHAGQRHDGA 2
AVDAHPVAAELRGDALGEPDHGVLGRRV VRA+PADGAGHAGQRHDGA
Sbjct: 295 AVDAHPVAAELRGDALGEPDHGVLGRRVRVRAQPADGAGHAGQRHDGA 152
Score = 84.9 bits (179), Expect(2) = 2e-027
Identities = 34/35 (97%), Positives = 34/35 (97%)
Frame = +2 / +2
Query: 50 GPHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSP 154
GPH YTASKHAVVGLTKSVAAELGRHGVRVNCVSP
Sbjct: 200 GPHAYTASKHAVVGLTKSVAAELGRHGVRVNCVSP 304
Score = 57.9 bits (120), Expect(2) = 2e-027
Identities = 22/24 (91%), Positives = 23/24 (95%)
Frame = +1 / +1
Query: 1 GLHRVAGQRGQRHRRDGPARLHGV 72
GLHRVAGQRGQRHRR GPAR+HGV
Sbjct: 151 GLHRVAGQRGQRHRRAGPARVHGV 222
>gb|CW111876.1|CW111876 104_485_11104574_116_34538_055 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11104574, DNA
sequence
Length = 401
Score = 106 bits (227), Expect = 3e-022
Identities = 48/57 (84%), Positives = 48/57 (84%)
Frame = -2 / -2
Query: 171 AVGTA*GDTQLTRTPWRPSSAATLLVSPTTACLDAV*TCGPVPPMALATLASDTMEP 1
AVGT *GDTQ RTP RPSSAATLLVSPTTAC D V* CGP P MALATLASDTMEP
Sbjct: 400 AVGTE*GDTQ*ARTPRRPSSAATLLVSPTTACWDTV*ACGPSPQMALATLASDTMEP 230
Score = 103 bits (219), Expect = 3e-021
Identities = 42/48 (87%), Positives = 43/48 (89%)
Frame = -1 / -1
Query: 145 AVDAHPVAAELRGDALGEPDHGVLGRRVDVRARPADGAGHAGQRHDGA 2
AV AHP AAELRGDALGEPDHGVLG V VRA+PADGAGHAGQRHDGA
Sbjct: 374 AVGAHPAAAELRGDALGEPDHGVLGHCVGVRAQPADGAGHAGQRHDGA 231
Score = 84.9 bits (179), Expect(2) = 7e-026
Identities = 34/41 (82%), Positives = 36/41 (87%)
Frame = +2 / +3
Query: 50 GPHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTA 172
GPH YT S+HAVVGLTKSVAAELGR GVR CVSPY+VPTA
Sbjct: 279 GPHAYTVSQHAVVGLTKSVAAELGRRGVRAYCVSPYSVPTA 401
Score = 53.3 bits (110), Expect(2) = 7e-026
Identities = 21/24 (87%), Positives = 21/24 (87%)
Frame = +1 / +2
Query: 1 GLHRVAGQRGQRHRRDGPARLHGV 72
GLHRVAGQRGQRH R GPARLH V
Sbjct: 230 GLHRVAGQRGQRHLRAGPARLHSV 301
>gb|CW158850.1|CW158850 104_564_11149046_148_36401_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11149046, DNA
sequence
Length = 686
Score = 71.6 bits (150), Expect(2) = 1e-025
Identities = 31/52 (59%), Positives = 39/52 (75%)
Frame = +2 / -3
Query: 251 ANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVNNNLRAFED* 406
ANLKGV D+A AVLYLASD+ARY+S NL++DGGF+ VN + F+D*
Sbjct: 186 ANLKGVRLRVADIAAAVLYLASDDARYISGHNLLLDGGFSIVNPSFGIFKD* 31
Score = 66.1 bits (138), Expect(2) = 1e-025
Identities = 28/64 (43%), Positives = 40/64 (62%)
Frame = +2 / -3
Query: 56 HVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALSMPHLPQGARADDALKDFLA 235
H YT +K +V LT++ AAELGRHG+RVNCVSP A T L+ ++ A + + +A
Sbjct: 363 HAYTCAKRGLVALTENAAAELGRHGIRVNCVSPAAAATPLATAYVGLEGEAFEQAMEAVA 184
Query: 236 FVGG 247
+ G
Sbjct: 183 NLKG 172
>gb|CW199665.1|CW199665 104_624_11183633_148_36850_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11183633, DNA
sequence
Length = 712
Score = 74.4 bits (156), Expect(3) = 7e-025
Identities = 32/57 (56%), Positives = 40/57 (70%)
Frame = +2 / -3
Query: 50 GPHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALSMPHLPQGARADDAL 220
GP YTASKHA++GL ++ A ELGRHGVRVNCVSP V T LS + G + +A+
Sbjct: 380 GPASYTASKHALLGLVRAAAGELGRHGVRVNCVSPGGVATPLSCALMGVGPQELEAM 210
Score = 52.4 bits (108), Expect(3) = 7e-025
Identities = 22/41 (53%), Positives = 30/41 (73%)
Frame = +2 / -3
Query: 257 LKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVN 379
L+G +DVA+A L+LASD+A ++S NL+VDG TAVN
Sbjct: 191 LQGKVLRADDVAEAALFLASDQAAFISGHNLVVDGAITAVN 69
Score = 25.8 bits (50), Expect(3) = 7e-025
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1 / -2
Query: 7 HRVAGQRGQRHRRDGPARLHGV 72
HRV G+RG R P +HGV
Sbjct: 423 HRVHGERGVAAGRVRPGVVHGV 358
>gb|CW213991.1|CW213991 104_645_11191856_116_37041_020 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11191856, DNA
sequence
Length = 439
Score = 70.7 bits (148), Expect(2) = 8e-024
Identities = 26/42 (61%), Positives = 33/42 (78%)
Frame = +2 / -3
Query: 50 GPHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTAL 175
G + Y+ SK A+ G+ K+ AAEL RHGVRVNC+SPYAVPT +
Sbjct: 365 GTYPYSVSKFAIAGIVKAAAAELSRHGVRVNCISPYAVPTPM 240
Score = 60.6 bits (126), Expect(2) = 8e-024
Identities = 25/47 (53%), Positives = 33/47 (70%)
Frame = +2 / -3
Query: 233 AFVGGEANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTA 373
A + G LKG D+A+A +YLASD+A+YVS NL+VDGGFT+
Sbjct: 182 AIIRGLGELKGATCEAVDIARAAVYLASDDAKYVSGHNLVVDGGFTS 42
>gb|CW271598.1|CW271598 104_743_11403084_116_35339_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11403084, DNA
sequence
Length = 492
Score = 70.3 bits (147), Expect(2) = 1e-023
Identities = 26/42 (61%), Positives = 33/42 (78%)
Frame = +2 / -3
Query: 50 GPHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTAL 175
G + Y+ SK A+ G+ K+ AAEL RHGVRVNC+SPYAVPT +
Sbjct: 436 GRYPYSVSKFAIAGIVKAAAAELSRHGVRVNCISPYAVPTPM 311
Score = 60.6 bits (126), Expect(2) = 1e-023
Identities = 25/47 (53%), Positives = 33/47 (70%)
Frame = +2 / -3
Query: 233 AFVGGEANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTA 373
A + G LKG D+A+A +YLASD+A+YVS NL+VDGGFT+
Sbjct: 253 AIIRGLGELKGATCEAVDIARAAVYLASDDAKYVSGHNLVVDGGFTS 113
>gb|CW499023.1|CW499023 fsbb001f293j08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f293j08, DNA
sequence
Length = 616
Score = 64.8 bits (135), Expect(2) = 5e-023
Identities = 27/64 (42%), Positives = 40/64 (62%)
Frame = +2 / -1
Query: 56 HVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALSMPHLPQGARADDALKDFLA 235
H YT +K +V LT++ +AELGRHG+RVNCVSP A T L+ ++ A + + +A
Sbjct: 316 HAYTCAKRGLVALTENASAELGRHGIRVNCVSPAAAATPLATAYVGLEGEAFEQAMEAVA 137
Query: 236 FVGG 247
+ G
Sbjct: 136 NLKG 125
Score = 63.8 bits (133), Expect(2) = 5e-023
Identities = 26/43 (60%), Positives = 33/43 (76%)
Frame = +2 / -1
Query: 251 ANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVN 379
ANLKGV D+A AVLY+A D+ARY+S NL++DGGF+ VN
Sbjct: 139 ANLKGVRLRVADIAAAVLYIARDDARYISGHNLLLDGGFSIVN 11
>gb|CW338135.1|CW338135 104_838_11484582_116_36125_025 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11484582, DNA
sequence
Length = 727
Score = 69.8 bits (146), Expect(2) = 2e-021
Identities = 29/48 (60%), Positives = 37/48 (77%)
Frame = +2 / -3
Query: 53 PHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALSMPHLPQ 196
P YTASK AVVGL ++VAAE+ R GVRVN +SP+A+PT L+M + Q
Sbjct: 398 PPAYTASKAAVVGLVRAVAAEVARSGVRVNAISPHAIPTPLTMAAVAQ 255
Score = 53.8 bits (111), Expect(2) = 2e-021
Identities = 21/30 (70%), Positives = 27/30 (90%)
Frame = +2 / -3
Query: 281 EDVAQAVLYLASDEARYVSAVNLMVDGGFT 370
+DVA+A LYLASDEA+YV+ NL+VDGG+T
Sbjct: 170 KDVAKAALYLASDEAKYVNGHNLLVDGGYT 81
>gb|CW313125.1|CW313125 104_803_11471123_148_35790_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11471123, DNA
sequence
Length = 682
Score = 69.8 bits (146), Expect(2) = 2e-021
Identities = 29/48 (60%), Positives = 37/48 (77%)
Frame = +2 / +1
Query: 53 PHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALSMPHLPQ 196
P YTASK AVVGL ++VAAE+ R GVRVN +SP+A+PT L+M + Q
Sbjct: 49 PPAYTASKAAVVGLVRAVAAEVARSGVRVNAISPHAIPTPLTMAAVAQ 192
Score = 53.8 bits (111), Expect(2) = 2e-021
Identities = 21/30 (70%), Positives = 27/30 (90%)
Frame = +2 / +1
Query: 281 EDVAQAVLYLASDEARYVSAVNLMVDGGFT 370
+DVA+A LYLASDEA+YV+ NL+VDGG+T
Sbjct: 277 KDVAKAALYLASDEAKYVNGHNLLVDGGYT 366
>gb|BG241362.1|BG241362 RHIZ2_51_B01.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 452
Score = 68.9 bits (144), Expect(2) = 3e-021
Identities = 28/43 (65%), Positives = 35/43 (81%)
Frame = +2 / +2
Query: 53 PHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALSM 181
P YTASK AVVGL ++VAAE+ R GVRVN +SP+A+PT L+M
Sbjct: 14 PPAYTASKAAVVGLVRAVAAEVARSGVRVNAISPHAIPTPLTM 142
Score = 53.8 bits (111), Expect(2) = 3e-021
Identities = 21/30 (70%), Positives = 27/30 (90%)
Frame = +2 / +2
Query: 281 EDVAQAVLYLASDEARYVSAVNLMVDGGFT 370
+DVA+A LYLASDEA+YV+ NL+VDGG+T
Sbjct: 242 KDVAKAALYLASDEAKYVNGHNLLVDGGYT 331
>gb|CW224533.1|CW224533 104_660_11203494_148_37445_017 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11203494, DNA
sequence
Length = 616
Score = 62.5 bits (130), Expect(2) = 6e-021
Identities = 25/38 (65%), Positives = 32/38 (84%)
Frame = +2 / -1
Query: 257 LKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFT 370
++GV PEDVA+A LYLASDE++YV+ NL+VDGGFT
Sbjct: 277 MEGVVLQPEDVARAALYLASDESKYVNGHNLVVDGGFT 164
Score = 59.3 bits (123), Expect(2) = 6e-021
Identities = 26/43 (60%), Positives = 30/43 (69%)
Frame = +2 / -1
Query: 53 PHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALSM 181
PH Y+ SK AVVGL ++VA EL R GVRVN VSP + T L M
Sbjct: 481 PHPYSVSKAAVVGLVRAVAGELARSGVRVNAVSPNYIATPLVM 353
>gb|CW273536.1|CW273536 104_746_11403953_148_35366_077 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11403953, DNA
sequence
Length = 616
Score = 62.5 bits (130), Expect(2) = 6e-021
Identities = 25/38 (65%), Positives = 32/38 (84%)
Frame = +2 / -2
Query: 257 LKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFT 370
++GV PEDVA+A LYLASDE++YV+ NL+VDGGFT
Sbjct: 270 MEGVVLQPEDVARAALYLASDESKYVNGHNLVVDGGFT 157
Score = 59.3 bits (123), Expect(2) = 6e-021
Identities = 26/43 (60%), Positives = 30/43 (69%)
Frame = +2 / -2
Query: 53 PHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALSM 181
PH Y+ SK AVVGL ++VA EL R GVRVN VSP + T L M
Sbjct: 474 PHPYSVSKAAVVGLVRAVAGELARSGVRVNAVSPNYIATPLVM 346
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 644,591,727
Number of Sequences: 832831
Number of extensions: 8440034
Number of successful extensions: 195956
Number of sequences better than 1.0e-020: 25
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 19247816484
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)