TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3071743.2.1
(586 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CL189180.1|CL189180 104_406_10902116_116_32472_076 Sorgh... 101 7e-055
gb|CW446179.1|CW446179 fsbb001f171l08k0 Sorghum methylation... 94 3e-037
gb|CL172147.1|CL172147 104_374_10889945_116_31775_233 Sorgh... 92 3e-029
gb|CW421946.1|CW421946 fsbb001f130p21k0 Sorghum methylation... 59 4e-025
gb|CL172148.1|CL172148 104_374_10889945_148_31774_233 Sorgh... 59 4e-025
gb|CW185422.1|CW185422 104_603_11166053_116_36697_029 Sorgh... 59 4e-025
gb|CW185423.1|CW185423 104_603_11166053_116_36833_029 Sorgh... 59 4e-025
gb|BI246143.1|BI246143 IP1_67_D12.b1_A002 Immature pannicle... 112 4e-024
gb|CD205658.1|CD205658 HS1_15_G02.g1_A012 Heat-shocked seed... 112 4e-024
gb|CD206547.1|CD206547 HS1_23_E08.g1_A012 Heat-shocked seed... 112 4e-024
gb|CD224015.1|CD224015 CCC1_31_F06.g1_A007 Callus culture/c... 112 4e-024
gb|CD225023.1|CD225023 CCC1_37_C04.g1_A007 Callus culture/c... 112 4e-024
gb|CD424097.1|CD424097 SA1_3_C09.g1_A002 Salicylic acid-tre... 112 4e-024
gb|CF489417.1|CF489417 POL1_57_A12.g1_A002 Pollen Sorghum b... 112 4e-024
gb|CN134452.1|CN134452 OX1_26_A10.g1_A002 Oxidatively-stres... 112 4e-024
gb|CX613664.1|CX613664 GABR1_9_B04.g1_A002 GA- or brassinol... 112 4e-024
gb|CX618130.1|CX618130 GABR1_37_H02.g1_A002 GA- or brassino... 112 4e-024
gb|CL189179.1|CL189179 104_406_10902116_114_32468_076 Sorgh... 75 2e-023
gb|CF759346.1|CF759346 DSAF1_44_B04.b1_A011 Drought-stresse... 109 3e-023
gb|CN127097.1|CN127097 RHOH1_21_B10.b1_A002 Acid- and alkal... 109 3e-023
gb|CF428645.1|CF428645 PH1_9_C06.g1_A002 Phosphorous-defici... 109 4e-023
gb|BE366718.1|BE366718 PI1_37_B06.b1_A002 Pathogen induced ... 104 9e-022
gb|CD211834.1|CD211834 HS1_64_H09.g1_A012 Heat-shocked seed... 104 9e-022
gb|CX614526.1|CX614526 GABR1_14_D04.g1_A002 GA- or brassino... 104 9e-022
gb|BE355874.1|BE355874 DG1_11_A02.b1_A002 Dark Grown 1 (DG1... 104 1e-021
gb|CN126830.1|CN126830 RHOH1_19_A05.g1_A002 Acid- and alkal... 103 2e-021
gb|CX621353.1|CX621353 GABR1_57_D08.g1_A002 GA- or brassino... 103 2e-021
gb|CX621689.1|CX621689 GABR1_59_C11.g1_A002 GA- or brassino... 103 2e-021
>gb|CL189180.1|CL189180 104_406_10902116_116_32472_076 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10902116, DNA
sequence
Length = 624
Score = 101 bits (217), Expect(3) = 2e-046
Identities = 46/74 (62%), Positives = 55/74 (74%)
Frame = -1 / +2
Query: 502 WELLFQDLQAFSRPPQNAHEAQVSTSILTC*LLQS*KMTEMS*AGL*LVTLDSDWSKMIL 323
W FQ LQAF +PP+NAHEAQVSTS LTC*LLQS*KMTEMS*AGL*LV LD +S+
Sbjct: 179 WSTYFQVLQAFLQPPENAHEAQVSTSTLTC*LLQS*KMTEMS*AGL*LVILDPVYSEWSK 358
Query: 322 EVMTAVVVCRICHL 281
++ + +CH+
Sbjct: 359 MILEVMTAVVVCHI 400
Score = 90.4 bits (193), Expect(4) = 7e-055
Identities = 39/54 (72%), Positives = 42/54 (77%)
Frame = +1 / -2
Query: 328 SSCSNQNLGSPVKVQLXXXXXXXXXATANKSRLRWTLELHERFVEAVKKLEGPE 489
S+ S Q+LGSPVKVQL AT NKSRLRWTLELHERF+EAVKKLEGPE
Sbjct: 353 STQSIQDLGSPVKVQLSSSQSSSSSATTNKSRLRWTLELHERFLEAVKKLEGPE 192
Score = 81.8 bits (174), Expect(4) = 4e-046
Identities = 41/48 (85%), Positives = 46/48 (95%)
Frame = +3 / -1
Query: 348 SRVTS*SPA*LISVIF*LCNS*QVKIEVDT*AS*AFCGGREKA*RS*K 491
SR+TS*SPA*LISVIF*LCN+*QVK+EVDT*AS*AF GG +KA*R+*K
Sbjct: 333 SRITS*SPA*LISVIF*LCNN*QVKVEVDT*AS*AFSGGCKKA*RT*K 190
Score = 65.5 bits (138), Expect(3) = 2e-046
Identities = 26/29 (89%), Positives = 26/29 (89%)
Frame = -1 / +2
Query: 286 HLNEDSSHCQ*WQFLAAQTGTEIPSVRQK 200
HLNEDS HCQ*WQFLAAQTGTEIPSV K
Sbjct: 536 HLNEDSFHCQ*WQFLAAQTGTEIPSVHHK 622
Score = 64.1 bits (135), Expect(4) = 7e-055
Identities = 26/29 (89%), Positives = 28/29 (96%)
Frame = +1 / -2
Query: 199 AFDEQMEFQFLSEQLEIAITDNEKNPHLD 285
A+DEQMEFQFLSEQL IAITDNEK+PHLD
Sbjct: 623 AYDEQMEFQFLSEQLGIAITDNEKSPHLD 537
Score = 60.9 bits (128), Expect(4) = 7e-055
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = +1 / -3
Query: 490 KATPKGVLKLMKVEGLTIYHVKSHLQ 567
+ATPKGVLKLMKVEGLTIYHVKSHLQ
Sbjct: 94 EATPKGVLKLMKVEGLTIYHVKSHLQ 17
Score = 58.2 bits (122), Expect(3) = 2e-046
Identities = 24/25 (96%), Positives = 25/25 (100%)
Frame = -3 / +3
Query: 566 CRWLFT**IVRPSTFISFSTPLGVA 492
CRWLFT**+VRPSTFISFSTPLGVA
Sbjct: 18 CRWLFT**MVRPSTFISFSTPLGVA 92
Score = 57.3 bits (120), Expect(5) = 3e-041
Identities = 26/33 (78%), Positives = 29/33 (87%)
Frame = -3 / +1
Query: 302 GVPYMSSK*GFFSLSVMAISSCSDRN*NSICSS 204
G+ ++SK*G FSLSVMAI SCSDRN*NSICSS
Sbjct: 520 GLG*LTSK*GLFSLSVMAIPSCSDRN*NSICSS 618
Score = 56.8 bits (119), Expect(4) = 7e-055
Identities = 18/21 (85%), Positives = 20/21 (95%)
Frame = +2 / -3
Query: 287 TYTAHHHSCHHFQYHLAPIRI 349
TY AHHHSCHHFQYHLAP+R+
Sbjct: 403 TYMAHHHSCHHFQYHLAPLRV 341
Score = 56.8 bits (119), Expect(5) = 3e-041
Identities = 24/31 (77%), Positives = 25/31 (80%)
Frame = -2 / +2
Query: 567 LQMALHMINC*TFYLH*FQHTFGSCFFRTFK 475
LQMALHMIN *TFYLH*FQHT SCF + K
Sbjct: 17 LQMALHMING*TFYLH*FQHTLRSCFCKDMK 109
Score = 55.9 bits (117), Expect(4) = 4e-046
Identities = 24/25 (96%), Positives = 25/25 (100%)
Frame = +3 / -1
Query: 210 TDGISVPV*AARNCHH*Q*EESSFR 284
TDGISVPV*AARNCHH*Q*+ESSFR
Sbjct: 612 TDGISVPV*AARNCHH*Q*KESSFR 538
Score = 54.1 bits (113), Expect(4) = 4e-046
Identities = 22/26 (84%), Positives = 24/26 (92%)
Frame = +3 / -2
Query: 489 KSNSQRCAETNEGRRSNNLSCEEPSA 566
+SNS CAETNEGRRSN+LSCEEPSA
Sbjct: 95 RSNS*GCAETNEGRRSNHLSCEEPSA 18
Score = 51.4 bits (107), Expect(5) = 1e-033
Identities = 24/29 (82%), Positives = 25/29 (86%)
Frame = -2 / +3
Query: 285 I*MRILLIVSDGNF*LLRQELKFHLFVKS 199
I*MR L IVSDGN *LLRQELKFHLF+ S
Sbjct: 537 I*MRTLFIVSDGNS*LLRQELKFHLFIIS 623
Score = 49.6 bits (103), Expect(5) = 3e-041
Identities = 18/21 (85%), Positives = 20/21 (95%)
Frame = -2 / +3
Query: 345 LIGAR*YWK**QLWWCAVYVI 283
L GAR*YWK**QLWWCA+YV+
Sbjct: 345 LSGAR*YWK**QLWWCAIYVL 407
Score = 49.6 bits (103), Expect(5) = 3e-041
Identities = 19/26 (73%), Positives = 21/26 (80%)
Frame = -2 / +3
Query: 501 GSCFFRTFKLFHGLHKTLMKLKCPPQ 424
G FR+FKLF+ L KTLMKLKCPPQ
Sbjct: 180 GQLTFRSFKLFYSLQKTLMKLKCPPQ 257
Score = 49.1 bits (102), Expect(4) = 4e-046
Identities = 18/22 (81%), Positives = 21/22 (95%)
Frame = +1 / -2
Query: 286 DIYGTPPQLSSLPVSSCSNQNL 351
DIYGTPPQLSSLP+SSCS Q++
Sbjct: 404 DIYGTPPQLSSLPISSCSTQSI 339
Score = 48.2 bits (100), Expect(4) = 3e-024
Identities = 23/30 (76%), Positives = 23/30 (76%)
Frame = +2 / -3
Query: 413 TSQD*GGHLSFMSVLWRP*KSLKVLKKQLP 502
TSQ *GGHLSFMSV WR *KSLK LK P
Sbjct: 268 TSQG*GGHLSFMSVFWRL*KSLKDLKVS*P 179
Score = 48.2 bits (100), Expect(5) = 1e-033
Identities = 22/25 (88%), Positives = 22/25 (88%)
Frame = -1 / +1
Query: 565 ADGSSHDKLLDLLPSLVSAHLWELL 491
ADGSSHDK LDLLPSLVSAH ELL
Sbjct: 19 ADGSSHDKWLDLLPSLVSAHP*ELL 93
Score = 47.3 bits (98), Expect(4) = 3e-024
Identities = 24/28 (85%), Positives = 26/28 (92%)
Frame = +2 / -1
Query: 485 LKKQLPKVC*N**R*KV*QFIM*RAICR 568
L+KQL +VC*N**R*KV* FIM*RAICR
Sbjct: 99 LQKQLLRVC*N**R*KV*PFIM*RAICR 16
Score = 47.3 bits (98), Expect(5) = 1e-033
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = -3 / +1
Query: 344 *LEQDDTGSDDSCGGVPYMSSK 279
*+EQDD GSDDSCGGVPYMS K
Sbjct: 346 *VEQDDIGSDDSCGGVPYMS*K 411
Score = 42.8 bits (88), Expect(5) = 1e-033
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = -3 / +1
Query: 488 SGPSSFFTASTKRS*SSSVH 429
SGPSSFFTAS KRS*SSSVH
Sbjct: 193 SGPSSFFTASRKRS*SSSVH 252
Score = 39.6 bits (81), Expect(4) = 3e-024
Identities = 18/26 (69%), Positives = 21/26 (80%)
Frame = +3 / -1
Query: 270 ESSFR*HIRHTTTAVITSSIILLQSE 347
++ F HI HTTTAVITS+IILL SE
Sbjct: 420 DTMFLGHIWHTTTAVITSNIILLHSE 343
Score = 30.6 bits (61), Expect(4) = 3e-024
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2 / -3
Query: 200 LLTNRWNFXXXXXXXXXXXXTMRRILI*M 286
L+ NRWNF TM+R+LI*M
Sbjct: 622 LMMNRWNFSSCLSS*ELPSLTMKRVLI*M 536
Score = 26.9 bits (53), Expect(5) = 3e-041
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -3 / +1
Query: 374 SWTLTGDPR 348
SWTLTGDPR
Sbjct: 307 SWTLTGDPR 333
Score = 24.2 bits (47), Expect(5) = 1e-033
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -2 / +3
Query: 375 KLDFNW*P*IL 343
KLDFNW* *IL
Sbjct: 306 KLDFNW*S*IL 338
>gb|CW446179.1|CW446179 fsbb001f171l08k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f171l08, DNA
sequence
Length = 416
Score = 94.0 bits (201), Expect(3) = 8e-037
Identities = 44/57 (77%), Positives = 48/57 (84%)
Frame = -1 / +2
Query: 502 WELLFQDLQAFSRPPQNAHEAQVSTSILTC*LLQS*KMTEMS*AGL*LVTLDSDWSK 332
W FQ LQAF +PP+NAHEAQVSTS LTC*LLQS*KMTEMS*AGL*LV LD +S+
Sbjct: 197 WSTYFQVLQAFLQPPENAHEAQVSTSTLTC*LLQS*KMTEMS*AGL*LVILDPVYSE 367
Score = 90.4 bits (193), Expect(3) = 3e-037
Identities = 39/54 (72%), Positives = 42/54 (77%)
Frame = +1 / -1
Query: 328 SSCSNQNLGSPVKVQLXXXXXXXXXATANKSRLRWTLELHERFVEAVKKLEGPE 489
S+ S Q+LGSPVKVQL AT NKSRLRWTLELHERF+EAVKKLEGPE
Sbjct: 371 SAQSIQDLGSPVKVQLSSSQSSSSSATTNKSRLRWTLELHERFLEAVKKLEGPE 210
Score = 81.8 bits (174), Expect(3) = 2e-032
Identities = 41/48 (85%), Positives = 46/48 (95%)
Frame = +3 / -3
Query: 348 SRVTS*SPA*LISVIF*LCNS*QVKIEVDT*AS*AFCGGREKA*RS*K 491
SR+TS*SPA*LISVIF*LCN+*QVK+EVDT*AS*AF GG +KA*R+*K
Sbjct: 351 SRITS*SPA*LISVIF*LCNN*QVKVEVDT*AS*AFSGGCKKA*RT*K 208
Score = 60.9 bits (128), Expect(3) = 3e-037
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = +1 / -2
Query: 490 KATPKGVLKLMKVEGLTIYHVKSHLQ 567
+ATPKGVLKLMKVEGLTIYHVKSHLQ
Sbjct: 112 EATPKGVLKLMKVEGLTIYHVKSHLQ 35
Score = 58.2 bits (122), Expect(3) = 8e-037
Identities = 24/25 (96%), Positives = 25/25 (100%)
Frame = -3 / +3
Query: 566 CRWLFT**IVRPSTFISFSTPLGVA 492
CRWLFT**+VRPSTFISFSTPLGVA
Sbjct: 36 CRWLFT**MVRPSTFISFSTPLGVA 110
Score = 56.8 bits (119), Expect(4) = 3e-023
Identities = 24/31 (77%), Positives = 25/31 (80%)
Frame = -2 / +2
Query: 567 LQMALHMINC*TFYLH*FQHTFGSCFFRTFK 475
LQMALHMIN *TFYLH*FQHT SCF + K
Sbjct: 35 LQMALHMING*TFYLH*FQHTLRSCFCKDMK 127
Score = 54.1 bits (113), Expect(3) = 2e-032
Identities = 22/26 (84%), Positives = 24/26 (92%)
Frame = +3 / -1
Query: 489 KSNSQRCAETNEGRRSNNLSCEEPSA 566
+SNS CAETNEGRRSN+LSCEEPSA
Sbjct: 113 RSNS*GCAETNEGRRSNHLSCEEPSA 36
Score = 49.6 bits (103), Expect(4) = 3e-023
Identities = 19/26 (73%), Positives = 21/26 (80%)
Frame = -2 / +3
Query: 501 GSCFFRTFKLFHGLHKTLMKLKCPPQ 424
G FR+FKLF+ L KTLMKLKCPPQ
Sbjct: 198 GQLTFRSFKLFYSLQKTLMKLKCPPQ 275
Score = 42.8 bits (88), Expect(3) = 3e-037
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +2 / -2
Query: 299 HHHSCHHFQYHLAPIRI 349
H SCHHFQYHLAP+R+
Sbjct: 409 HRRSCHHFQYHLAPLRV 359
Score = 40.5 bits (83), Expect(3) = 2e-032
Identities = 15/19 (78%), Positives = 18/19 (94%)
Frame = +1 / -1
Query: 295 GTPPQLSSLPVSSCSNQNL 351
GTPPQLSSLP+SSCS Q++
Sbjct: 413 GTPPQLSSLPISSCSAQSI 357
Score = 38.7 bits (79), Expect(3) = 8e-037
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = -3 / +1
Query: 338 EQDDTGSDDSCGGVP 294
EQDD GSDDSCGGVP
Sbjct: 370 EQDDIGSDDSCGGVP 414
Score = 27.8 bits (55), Expect(4) = 3e-023
Identities = 13/16 (81%), Positives = 13/16 (81%)
Frame = -2 / +3
Query: 345 LIGAR*YWK**QLWWC 298
L GAR*YWK**QL C
Sbjct: 363 LSGAR*YWK**QLRRC 410
Score = 26.9 bits (53), Expect(4) = 3e-023
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -3 / +1
Query: 374 SWTLTGDPR 348
SWTLTGDPR
Sbjct: 325 SWTLTGDPR 351
>gb|CL172147.1|CL172147 104_374_10889945_116_31775_233 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10889945, DNA
sequence
Length = 703
Score = 92.2 bits (197), Expect(3) = 3e-023
Identities = 43/64 (67%), Positives = 48/64 (75%)
Frame = -3 / -2
Query: 290 MSSK*GFFSLSVMAISSCSDRN*NSICSSKAKALFSPWKLPSEASPERLSKSFRSSDCSA 111
++S G SLSVMAI SCSD+N*NSICS KA L SPWKLP EASPERL KS RS+ SA
Sbjct: 375 LTSNRGLSSLSVMAIPSCSDKN*NSICSLKAMPLLSPWKLPPEASPERLRKSLRSAAGSA 196
Query: 110 TSKP 99
+ P
Sbjct: 195 SL*P 184
Score = 71.8 bits (152), Expect(5) = 3e-029
Identities = 29/37 (78%), Positives = 33/37 (89%)
Frame = +1 / +2
Query: 175 FHGENNALAFDEQMEFQFLSEQLEIAITDNEKNPHLD 285
FHGE+N +AF EQMEFQFLSEQL IAITDNE++P LD
Sbjct: 260 FHGESNGMAFREQMEFQFLSEQLGIAITDNEESPRLD 370
Score = 36.9 bits (75), Expect(5) = 3e-029
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = +1 / +3
Query: 403 ATANKSRLRWTLELHERF 456
A+ NK RLRWTLELHE F
Sbjct: 648 ASCNKPRLRWTLELHELF 701
Score = 36.0 bits (73), Expect(5) = 3e-029
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +1 / +3
Query: 286 DIYGTPPQLSSLPVSSCSNQN 348
DIY PPQ SS PV SCS+Q+
Sbjct: 531 DIYDRPPQTSSCPVLSCSDQD 593
Score = 34.6 bits (70), Expect(5) = 3e-029
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1 / +2
Query: 10 LPFLPHPPKCEQQVSAG 60
LPFLPHPPK E Q ++G
Sbjct: 80 LPFLPHPPKSEHQQTSG 130
Score = 31.5 bits (63), Expect(3) = 3e-023
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = -3 / -1
Query: 338 EQDDTGSDDSCGGVPYMS 285
EQD+TG ++ CGG+ Y+S
Sbjct: 583 EQDNTGQEEVCGGLSYIS 530
Score = 23.8 bits (46), Expect(3) = 3e-023
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -3 / -2
Query: 44 CSHLGG*GRKGK 9
CS LGG GRKG+
Sbjct: 114 CSLLGGWGRKGR 79
Score = 22.4 bits (43), Expect(5) = 3e-029
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +1 / +3
Query: 343 QNLGSPVKVQL 375
Q GSPVKVQL
Sbjct: 600 QRTGSPVKVQL 632
>gb|CW421946.1|CW421946 fsbb001f130p21k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f130p21, DNA
sequence
Length = 776
Score = 59.1 bits (124), Expect(4) = 4e-025
Identities = 24/26 (92%), Positives = 26/26 (100%)
Frame = +1 / +1
Query: 490 KATPKGVLKLMKVEGLTIYHVKSHLQ 567
+ATPKGVLKL+KVEGLTIYHVKSHLQ
Sbjct: 301 EATPKGVLKLVKVEGLTIYHVKSHLQ 378
Score = 52.8 bits (110), Expect(4) = 4e-025
Identities = 21/29 (72%), Positives = 24/29 (82%)
Frame = +1 / +3
Query: 403 ATANKSRLRWTLELHERFVEAVKKLEGPE 489
A+ NK RLRWTLELHE FV++V KL GPE
Sbjct: 135 ASCNKPRLRWTLELHELFVKSVNKLGGPE 221
Score = 36.0 bits (73), Expect(4) = 4e-025
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +1 / +3
Query: 286 DIYGTPPQLSSLPVSSCSNQN 348
DIY PPQ SS PV SCS+Q+
Sbjct: 18 DIYDRPPQTSSCPVLSCSDQD 80
Score = 22.4 bits (43), Expect(4) = 4e-025
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +1 / +3
Query: 343 QNLGSPVKVQL 375
Q GSPVKVQL
Sbjct: 87 QRTGSPVKVQL 119
>gb|CL172148.1|CL172148 104_374_10889945_148_31774_233 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10889945, DNA
sequence
Length = 767
Score = 59.1 bits (124), Expect(4) = 4e-025
Identities = 24/26 (92%), Positives = 26/26 (100%)
Frame = +1 / -2
Query: 490 KATPKGVLKLMKVEGLTIYHVKSHLQ 567
+ATPKGVLKL+KVEGLTIYHVKSHLQ
Sbjct: 340 EATPKGVLKLVKVEGLTIYHVKSHLQ 263
Score = 52.8 bits (110), Expect(4) = 4e-025
Identities = 21/29 (72%), Positives = 24/29 (82%)
Frame = +1 / -1
Query: 403 ATANKSRLRWTLELHERFVEAVKKLEGPE 489
A+ NK RLRWTLELHE FV++V KL GPE
Sbjct: 506 ASCNKPRLRWTLELHELFVKSVNKLGGPE 420
Score = 36.0 bits (73), Expect(4) = 4e-025
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +1 / -1
Query: 286 DIYGTPPQLSSLPVSSCSNQN 348
DIY PPQ SS PV SCS+Q+
Sbjct: 623 DIYDRPPQTSSCPVLSCSDQD 561
Score = 22.4 bits (43), Expect(4) = 4e-025
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +1 / -1
Query: 343 QNLGSPVKVQL 375
Q GSPVKVQL
Sbjct: 554 QRTGSPVKVQL 522
>gb|CW185422.1|CW185422 104_603_11166053_116_36697_029 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11166053, DNA
sequence
Length = 668
Score = 59.1 bits (124), Expect(4) = 4e-025
Identities = 24/26 (92%), Positives = 26/26 (100%)
Frame = +1 / +3
Query: 490 KATPKGVLKLMKVEGLTIYHVKSHLQ 567
+ATPKGVLKL+KVEGLTIYHVKSHLQ
Sbjct: 468 EATPKGVLKLVKVEGLTIYHVKSHLQ 545
Score = 52.8 bits (110), Expect(4) = 4e-025
Identities = 21/29 (72%), Positives = 24/29 (82%)
Frame = +1 / +2
Query: 403 ATANKSRLRWTLELHERFVEAVKKLEGPE 489
A+ NK RLRWTLELHE FV++V KL GPE
Sbjct: 302 ASCNKPRLRWTLELHELFVKSVNKLGGPE 388
Score = 36.0 bits (73), Expect(4) = 4e-025
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +1 / +2
Query: 286 DIYGTPPQLSSLPVSSCSNQN 348
DIY PPQ SS PV SCS+Q+
Sbjct: 185 DIYDRPPQTSSCPVLSCSDQD 247
Score = 22.4 bits (43), Expect(4) = 4e-025
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +1 / +2
Query: 343 QNLGSPVKVQL 375
Q GSPVKVQL
Sbjct: 254 QRTGSPVKVQL 286
>gb|CW185423.1|CW185423 104_603_11166053_116_36833_029 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11166053, DNA
sequence
Length = 633
Score = 59.1 bits (124), Expect(4) = 4e-025
Identities = 24/26 (92%), Positives = 26/26 (100%)
Frame = +1 / +3
Query: 490 KATPKGVLKLMKVEGLTIYHVKSHLQ 567
+ATPKGVLKL+KVEGLTIYHVKSHLQ
Sbjct: 468 EATPKGVLKLVKVEGLTIYHVKSHLQ 545
Score = 52.8 bits (110), Expect(4) = 4e-025
Identities = 21/29 (72%), Positives = 24/29 (82%)
Frame = +1 / +2
Query: 403 ATANKSRLRWTLELHERFVEAVKKLEGPE 489
A+ NK RLRWTLELHE FV++V KL GPE
Sbjct: 302 ASCNKPRLRWTLELHELFVKSVNKLGGPE 388
Score = 36.0 bits (73), Expect(4) = 4e-025
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +1 / +2
Query: 286 DIYGTPPQLSSLPVSSCSNQN 348
DIY PPQ SS PV SCS+Q+
Sbjct: 185 DIYDRPPQTSSCPVLSCSDQD 247
Score = 22.4 bits (43), Expect(4) = 4e-025
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +1 / +2
Query: 343 QNLGSPVKVQL 375
Q GSPVKVQL
Sbjct: 254 QRTGSPVKVQL 286
>gb|BI246143.1|BI246143 IP1_67_D12.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 489
Score = 112 bits (242), Expect = 4e-024
Identities = 46/59 (77%), Positives = 53/59 (89%)
Frame = +1 / +3
Query: 409 ANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
A + RLRWT ELHERFVEAV +L GP++ATPKGVL++M V+GLTIYHVKSHLQKYRLAK
Sbjct: 132 AARQRLRWTNELHERFVEAVTQLGGPDRATPKGVLRIMGVQGLTIYHVKSHLQKYRLAK 308
>gb|CD205658.1|CD205658 HS1_15_G02.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_15_G02_A012 5', mRNA sequence
Length = 619
Score = 112 bits (242), Expect = 4e-024
Identities = 46/59 (77%), Positives = 53/59 (89%)
Frame = +1 / +3
Query: 409 ANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
A + RLRWT ELHERFVEAV +L GP++ATPKGVL++M V+GLTIYHVKSHLQKYRLAK
Sbjct: 429 AARQRLRWTNELHERFVEAVTQLGGPDRATPKGVLRIMGVQGLTIYHVKSHLQKYRLAK 605
>gb|CD206547.1|CD206547 HS1_23_E08.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_23_E08_A012 5', mRNA sequence
Length = 631
Score = 112 bits (242), Expect = 4e-024
Identities = 46/59 (77%), Positives = 53/59 (89%)
Frame = +1 / +2
Query: 409 ANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
A + RLRWT ELHERFVEAV +L GP++ATPKGVL++M V+GLTIYHVKSHLQKYRLAK
Sbjct: 431 AARQRLRWTNELHERFVEAVTQLGGPDRATPKGVLRIMGVQGLTIYHVKSHLQKYRLAK 607
>gb|CD224015.1|CD224015 CCC1_31_F06.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_31_F06_A007 5', mRNA sequence
Length = 685
Score = 112 bits (242), Expect = 4e-024
Identities = 46/59 (77%), Positives = 53/59 (89%)
Frame = +1 / +3
Query: 409 ANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
A + RLRWT ELHERFVEAV +L GP++ATPKGVL++M V+GLTIYHVKSHLQKYRLAK
Sbjct: 435 AARQRLRWTNELHERFVEAVTQLGGPDRATPKGVLRIMGVQGLTIYHVKSHLQKYRLAK 611
>gb|CD225023.1|CD225023 CCC1_37_C04.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_37_C04_A007 5', mRNA sequence
Length = 641
Score = 112 bits (242), Expect = 4e-024
Identities = 46/59 (77%), Positives = 53/59 (89%)
Frame = +1 / +1
Query: 409 ANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
A + RLRWT ELHERFVEAV +L GP++ATPKGVL++M V+GLTIYHVKSHLQKYRLAK
Sbjct: 430 AARQRLRWTNELHERFVEAVTQLGGPDRATPKGVLRIMGVQGLTIYHVKSHLQKYRLAK 606
>gb|CD424097.1|CD424097 SA1_3_C09.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_3_C09_A002 5', mRNA sequence
Length = 676
Score = 112 bits (242), Expect = 4e-024
Identities = 46/59 (77%), Positives = 53/59 (89%)
Frame = +1 / +1
Query: 409 ANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
A + RLRWT ELHERFVEAV +L GP++ATPKGVL++M V+GLTIYHVKSHLQKYRLAK
Sbjct: 430 AARQRLRWTNELHERFVEAVTQLGGPDRATPKGVLRIMGVQGLTIYHVKSHLQKYRLAK 606
>gb|CF489417.1|CF489417 POL1_57_A12.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_57_A12_A002 5', mRNA sequence
Length = 777
Score = 112 bits (242), Expect = 4e-024
Identities = 46/59 (77%), Positives = 53/59 (89%)
Frame = +1 / +1
Query: 409 ANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
A + RLRWT ELHERFVEAV +L GP++ATPKGVL++M V+GLTIYHVKSHLQKYRLAK
Sbjct: 430 AARQRLRWTNELHERFVEAVTQLGGPDRATPKGVLRIMGVQGLTIYHVKSHLQKYRLAK 606
>gb|CN134452.1|CN134452 OX1_26_A10.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_26_A10_A002 5', mRNA sequence
Length = 779
Score = 112 bits (242), Expect = 4e-024
Identities = 46/59 (77%), Positives = 53/59 (89%)
Frame = +1 / +1
Query: 409 ANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
A + RLRWT ELHERFVEAV +L GP++ATPKGVL++M V+GLTIYHVKSHLQKYRLAK
Sbjct: 388 AARQRLRWTNELHERFVEAVTQLGGPDRATPKGVLRIMGVQGLTIYHVKSHLQKYRLAK 564
>gb|CX613664.1|CX613664 GABR1_9_B04.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_9_B04_A002 5', mRNA sequence
Length = 724
Score = 112 bits (242), Expect = 4e-024
Identities = 46/59 (77%), Positives = 53/59 (89%)
Frame = +1 / +1
Query: 409 ANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
A + RLRWT ELHERFVEAV +L GP++ATPKGVL++M V+GLTIYHVKSHLQKYRLAK
Sbjct: 418 AARQRLRWTNELHERFVEAVTQLGGPDRATPKGVLRIMGVQGLTIYHVKSHLQKYRLAK 594
>gb|CX618130.1|CX618130 GABR1_37_H02.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_37_H02_A002 5', mRNA sequence
Length = 832
Score = 112 bits (242), Expect = 4e-024
Identities = 46/59 (77%), Positives = 53/59 (89%)
Frame = +1 / +2
Query: 409 ANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
A + RLRWT ELHERFVEAV +L GP++ATPKGVL++M V+GLTIYHVKSHLQKYRLAK
Sbjct: 425 AARQRLRWTNELHERFVEAVTQLGGPDRATPKGVLRIMGVQGLTIYHVKSHLQKYRLAK 601
>gb|CL189179.1|CL189179 104_406_10902116_114_32468_076 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10902116, DNA
sequence
Length = 667
Score = 75.4 bits (160), Expect(2) = 2e-023
Identities = 31/38 (81%), Positives = 33/38 (86%)
Frame = -3 / -3
Query: 116 SATSKPVSPLKSREELDE*PAETCCSHLGG*GRKGKVP 3
S+ PVSPL SREELD+ PAETCCSHLGG*GRKGKVP
Sbjct: 602 SSKPLPVSPLNSREELDDCPAETCCSHLGG*GRKGKVP 489
Score = 53.2 bits (111), Expect(2) = 2e-023
Identities = 22/26 (84%), Positives = 24/26 (92%)
Frame = -3 / -3
Query: 173 LPSEASPERLSKSFRSSDCSATSKPV 96
LPSEASPER KSFRSSDCSA+SKP+
Sbjct: 665 LPSEASPERSRKSFRSSDCSASSKPL 588
>gb|CF759346.1|CF759346 DSAF1_44_B04.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_44_B04_A011 5', mRNA sequence
Length = 548
Score = 109 bits (236), Expect = 3e-023
Identities = 46/61 (75%), Positives = 52/61 (85%)
Frame = +1 / +3
Query: 403 ATANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLA 582
A+ K R+RWT ELHE FV+AV +L G EKATPKGVLKLMKV+GLTIYHVKSHLQKYR A
Sbjct: 201 ASVAKQRMRWTPELHECFVDAVNQLGGSEKATPKGVLKLMKVDGLTIYHVKSHLQKYRTA 380
Query: 583 K 585
+
Sbjct: 381 R 383
>gb|CN127097.1|CN127097 RHOH1_21_B10.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_21_B10_A002 3', mRNA sequence
Length = 834
Score = 109 bits (236), Expect = 3e-023
Identities = 46/61 (75%), Positives = 52/61 (85%)
Frame = +1 / +2
Query: 403 ATANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLA 582
A+ K R+RWT ELHE FV+AV +L G EKATPKGVLKLMKV+GLTIYHVKSHLQKYR A
Sbjct: 269 ASVAKQRMRWTPELHECFVDAVNQLGGSEKATPKGVLKLMKVDGLTIYHVKSHLQKYRTA 448
Query: 583 K 585
+
Sbjct: 449 R 451
>gb|CF428645.1|CF428645 PH1_9_C06.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_9_C06_A002 5', mRNA sequence
Length = 659
Score = 109 bits (235), Expect = 4e-023
Identities = 45/59 (76%), Positives = 52/59 (88%)
Frame = +1 / +3
Query: 409 ANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
A + RLRWT ELHE FVEAV +L GP++ATPKGVL++M V+GLTIYHVKSHLQKYRLAK
Sbjct: 441 AARQRLRWTNELHEGFVEAVTQLGGPDRATPKGVLRIMGVQGLTIYHVKSHLQKYRLAK 617
>gb|BE366718.1|BE366718 PI1_37_B06.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 400
Score = 104 bits (225), Expect = 9e-022
Identities = 42/61 (68%), Positives = 52/61 (85%)
Frame = +1 / +2
Query: 403 ATANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLA 582
+T K RL+WT ELHERFVEAV +L GP+KATPK +++LM V GLT+YH+KSHLQKYRL+
Sbjct: 176 STDAKPRLKWTPELHERFVEAVNQLGGPDKATPKTIMRLMGVPGLTLYHLKSHLQKYRLS 355
Query: 583 K 585
K
Sbjct: 356 K 358
>gb|CD211834.1|CD211834 HS1_64_H09.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_64_H09_A012 5', mRNA sequence
Length = 548
Score = 104 bits (225), Expect = 9e-022
Identities = 42/61 (68%), Positives = 52/61 (85%)
Frame = +1 / +2
Query: 403 ATANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLA 582
+T K RL+WT ELHERFVEAV +L GP+KATPK +++LM V GLT+YH+KSHLQKYRL+
Sbjct: 296 STDAKPRLKWTPELHERFVEAVNQLGGPDKATPKTIMRLMGVPGLTLYHLKSHLQKYRLS 475
Query: 583 K 585
K
Sbjct: 476 K 478
>gb|CX614526.1|CX614526 GABR1_14_D04.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_14_D04_A002 5', mRNA sequence
Length = 857
Score = 104 bits (225), Expect = 9e-022
Identities = 42/61 (68%), Positives = 52/61 (85%)
Frame = +1 / +1
Query: 403 ATANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLA 582
+T K RL+WT ELHERFVEAV +L GP+KATPK +++LM V GLT+YH+KSHLQKYRL+
Sbjct: 286 STDAKPRLKWTPELHERFVEAVNQLGGPDKATPKTIMRLMGVPGLTLYHLKSHLQKYRLS 465
Query: 583 K 585
K
Sbjct: 466 K 468
>gb|BE355874.1|BE355874 DG1_11_A02.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 505
Score = 104 bits (224), Expect = 1e-021
Identities = 41/59 (69%), Positives = 50/59 (84%)
Frame = +1 / +2
Query: 409 ANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
+ K RLRWT +LH RFV+A+ +L GP++ATPKGVL +M V G+TIYHVKSHLQKYRLAK
Sbjct: 224 SGKQRLRWTSDLHNRFVDAIAQLGGPDRATPKGVLTVMGVPGITIYHVKSHLQKYRLAK 400
>gb|CN126830.1|CN126830 RHOH1_19_A05.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_19_A05_A002 5', mRNA sequence
Length = 767
Score = 103 bits (223), Expect = 2e-021
Identities = 41/61 (67%), Positives = 52/61 (85%)
Frame = +1 / +2
Query: 403 ATANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLA 582
+T K RL+WT ELHERFVEAV +L GP+KATPK +++LM + GLT+YH+KSHLQKYRL+
Sbjct: 326 STDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSHLQKYRLS 505
Query: 583 K 585
K
Sbjct: 506 K 508
>gb|CX621353.1|CX621353 GABR1_57_D08.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_57_D08_A002 5', mRNA sequence
Length = 606
Score = 103 bits (223), Expect = 2e-021
Identities = 41/61 (67%), Positives = 52/61 (85%)
Frame = +1 / +3
Query: 403 ATANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLA 582
+T K RL+WT ELHERFVEAV +L GP+KATPK +++LM + GLT+YH+KSHLQKYRL+
Sbjct: 318 STDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSHLQKYRLS 497
Query: 583 K 585
K
Sbjct: 498 K 500
>gb|CX621689.1|CX621689 GABR1_59_C11.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_59_C11_A002 5', mRNA sequence
Length = 668
Score = 103 bits (223), Expect = 2e-021
Identities = 41/61 (67%), Positives = 52/61 (85%)
Frame = +1 / +1
Query: 403 ATANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLA 582
+T K RL+WT ELHERFVEAV +L GP+KATPK +++LM + GLT+YH+KSHLQKYRL+
Sbjct: 319 STDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSHLQKYRLS 498
Query: 583 K 585
K
Sbjct: 499 K 501
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.314 0.132 0.386
Matrix: BLOSUM62
Number of Hits to DB: 655,087,107
Number of Sequences: 832831
Number of extensions: 7693598
Number of successful extensions: 59877
Number of sequences better than 1.0e-020: 33
length of database: 163,786,556
effective HSP length: 55
effective length of database: 117,980,851
effective search space used: 16399338289
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 42 (22.0 bits)