TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3071103.2.1
(570 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE597906.1|BE597906 PI1_66_H02.g1_A002 Pathogen induced ... 284 6e-076
gb|CW206617.1|CW206617 104_635_11187687_116_36961_058 Sorgh... 170 7e-069
gb|BE598085.1|BE598085 PI1_65_E11.b1_A002 Pathogen induced ... 170 7e-069
gb|BE597800.1|BE597800 PI1_65_E11.g1_A002 Pathogen induced ... 167 5e-068
gb|CW307372.1|CW307372 104_795_11468105_148_35736_073 Sorgh... 166 3e-066
gb|CW388025.1|CW388025 fsbb001f072j20k0 Sorghum methylation... 116 4e-064
gb|BZ338038.1|BZ338038 ia92e12.b1 WGS-SbicolorF (JM107 adap... 116 4e-064
gb|BE367523.1|BE367523 PI1_8_E06.g1_A002 Pathogen induced 1... 140 4e-060
gb|BE366378.1|BE366378 PI1_32_H10.g1_A002 Pathogen induced ... 117 1e-052
gb|CF760116.1|CF760116 DSAF1_55_F11.b1_A011 Drought-stresse... 114 3e-052
gb|CW430429.1|CW430429 fsbb001f144c05k0 Sorghum methylation... 129 1e-049
gb|CN137269.1|CN137269 OX1_56_F03.b1_A002 Oxidatively-stres... 129 1e-049
gb|BE598196.1|BE598196 PI1_66_H02.b1_A002 Pathogen induced ... 141 9e-049
gb|CN130255.1|CN130255 RHOH1_40_F08.b1_A002 Acid- and alkal... 123 9e-048
gb|CN129927.1|CN129927 RHOH1_38_F07.b1_A002 Acid- and alkal... 133 6e-046
gb|CW263590.1|CW263590 104_731_11230799_148_35217_082 Sorgh... 133 6e-046
gb|CW470070.1|CW470070 fsbb001f223b16f0 Sorghum methylation... 116 1e-044
gb|BE358858.1|BE358858 DG1_32_F07.g1_A002 Dark Grown 1 (DG1... 118 6e-042
gb|CW488277.1|CW488277 fsbb001f254j12f0 Sorghum methylation... 170 2e-041
gb|BE357811.1|BE357811 DG1_22_D10.g1_A002 Dark Grown 1 (DG1... 136 1e-040
gb|CW489486.1|CW489486 fsbb001f274h04f0 Sorghum methylation... 136 1e-040
gb|BG049497.1|BG049497 OV1_20_G04.g1_A002 Ovary 1 (OV1) Sor... 136 1e-040
gb|CW448428.1|CW448428 fsbb001f182a11k0 Sorghum methylation... 135 5e-040
gb|CW275250.1|CW275250 104_748_11404861_148_35382_055 Sorgh... 135 5e-040
gb|BG049053.1|BG049053 OV1_22_F09.g1_A002 Ovary 1 (OV1) Sor... 133 5e-040
gb|CW039394.1|CW039394 104_272_10505475_115_30390 Sorghum m... 133 9e-039
gb|CW266083.1|CW266083 104_735_11232237_148_35267_085 Sorgh... 100 4e-038
gb|AW922776.1|AW922776 DG1_46_C01.g1_A002 Dark Grown 1 (DG1... 122 1e-037
gb|CX613448.1|CX613448 GABR1_8_E12.b1_A002 GA- or brassinol... 122 1e-037
gb|CN151360.1|CN151360 WOUND1_75_B02.b1_A002 Wounded leaves... 122 1e-037
gb|CX610007.1|CX610007 ANR1_16_C10.b1_A002 Anaerobic roots ... 122 1e-037
gb|CW357974.1|CW357974 fsbb001f024n22k0 Sorghum methylation... 122 1e-037
gb|CL161206.1|CL161206 104_352_10805558_116_31827_230 Sorgh... 90 1e-037
gb|CD423411.1|CD423411 SA1_23_C09.b1_A002 Salicylic acid-tr... 122 1e-037
gb|CW150339.1|CW150339 104_549_11142974_116_36302_051 Sorgh... 122 1e-037
gb|CW318996.1|CW318996 104_811_11474252_116_35881_074 Sorgh... 122 1e-037
gb|BE362915.2|BE362915 DG1_90_E12.g1_A002 Dark Grown 1 (DG1... 133 1e-037
gb|BE359997.1|BE359997 DG1_60_H07.g2_A002 Dark Grown 1 (DG1... 122 1e-037
gb|AW924229.1|AW924229 WS1_51_H04.b1_A002 Water-stressed 1 ... 122 1e-037
gb|CW110423.1|CW110423 104_483_11103696_148_34524_094 Sorgh... 133 9e-036
gb|AF402939.1|AF402939 Sorghum halepense chitinase-B gene, ... 121 2e-035
gb|CW365833.1|CW365833 fsbb001f038i18k0 Sorghum methylation... 121 3e-035
gb|CN132942.1|CN132942 OX1_9_D11.b1_A002 Oxidatively-stress... 121 3e-035
gb|CL160722.1|CL160722 104_351_10805186_116_31825_242 Sorgh... 121 3e-035
gb|BE918012.1|BE918012 OV1_8_G11.g1_A002 Ovary 1 (OV1) Sorg... 121 3e-035
gb|CD223183.1|CD223183 CCC1_26_G01.g1_A007 Callus culture/c... 121 3e-035
gb|AW746018.1|AW746018 WS1_38_H11.g1_A002 Water-stressed 1 ... 121 3e-035
gb|CD224094.1|CD224094 CCC1_32_C12.b1_A007 Callus culture/c... 121 3e-035
gb|CD226332.1|CD226332 CCC1_45_F08.b1_A007 Callus culture/c... 121 3e-035
gb|CD226807.1|CD226807 CCC1_48_C11.b1_A007 Callus culture/c... 121 3e-035
gb|CD228493.1|CD228493 CCC1_8_E11.b1_A007 Callus culture/ce... 121 3e-035
gb|CD432114.1|CD432114 ETH1_26_H07.b1_A002 Ethylene-treated... 121 3e-035
gb|CW066077.1|CW066077 104_313_10523499_114_30148 Sorghum m... 119 5e-035
gb|BE363379.1|BE363379 WS1_62_C05.g1_A002 Water-stressed 1 ... 121 4e-034
gb|AF402938.1|AF402938 Sorghum arundinaceum chitinase-B gen... 116 6e-034
gb|AY047607.1| Sorghum bicolor chitinase-B mRNA, partial cds 116 8e-034
gb|BE363714.1|BE363714 WS1_69_C06.g2_A002 Water-stressed 1 ... 116 8e-034
gb|CD464022.1|CD464022 ETH1_48_G10.b1_A002 Ethylene-treated... 116 8e-034
gb|CD226631.1|CD226631 CCC1_47_H05.b1_A007 Callus culture/c... 116 8e-034
gb|CD222353.1|CD222353 CCC1_21_F09.b1_A007 Callus culture/c... 116 8e-034
gb|AW922735.1|AW922735 DG1_45_B06.g1_A002 Dark Grown 1 (DG1... 116 8e-034
gb|CD221995.1|CD221995 CCC1_1_C09.b1_A007 Callus culture/ce... 116 8e-034
gb|CD221392.1|CD221392 CCC1_54_C04.b1_A007 Callus culture/c... 116 8e-034
gb|CD224145.1|CD224145 CCC1_32_A09.b1_A007 Callus culture/c... 116 8e-034
gb|CD227859.1|CD227859 CCC1_56_F04.b1_A007 Callus culture/c... 116 8e-034
gb|CD228687.1|CD228687 CCC1_9_D03.b1_A007 Callus culture/ce... 116 8e-034
gb|CD226496.1|CD226496 CCC1_46_E08.b1_A007 Callus culture/c... 116 8e-034
gb|CD223269.1|CD223269 CCC1_27_E04.b1_A007 Callus culture/c... 116 8e-034
gb|CD220455.1|CD220455 CCC1_67_F06.b1_A007 Callus culture/c... 116 8e-034
gb|CD228140.1|CD228140 CCC1_6_E03.b1_A007 Callus culture/ce... 116 8e-034
gb|AW746695.1|AW746695 WS1_54_E02.g1_A002 Water-stressed 1 ... 116 8e-034
gb|AW680953.1|AW680953 WS1_9_A06.b1_A002 Water-stressed 1 (... 116 8e-034
gb|BG556500.1|BG556500 EM1_37_H12.g1_A002 Embryo 1 (EM1) So... 116 8e-034
gb|CW098317.1|CW098317 104_464_11002941_148_34366_083 Sorgh... 116 8e-034
gb|BG464391.1|BG464391 EM1_69_B11.g1_A002 Embryo 1 (EM1) So... 122 8e-034
gb|CF486513.1|CF486513 POL1_38_D07.b1_A002 Pollen Sorghum b... 88 1e-033
gb|CD225586.1|CD225586 CCC1_40_H10.b1_A007 Callus culture/c... 116 1e-033
gb|AY047608.1| Sorghum bicolor chitinase-B1 mRNA, complete cds 116 1e-033
gb|BG102665.1|BG102665 RHIZ2_35_G08.g1_A003 Rhizome2 (RHIZ2... 136 2e-033
gb|CW324492.1|CW324492 104_819_11477191_148_35910_030 Sorgh... 109 4e-033
gb|CW363965.1|CW363965 fsbb001f035m22f0 Sorghum methylation... 109 4e-033
gb|CD225895.1|CD225895 CCC1_42_B03.b1_A007 Callus culture/c... 113 4e-033
gb|CW056944.1|CW056944 104_298_10517953_114_30151 Sorghum m... 109 4e-033
gb|CD227568.1|CD227568 CCC1_52_A02.b1_A007 Callus culture/c... 109 4e-033
gb|CD220272.1|CD220272 CCC1_66_G11.b1_A007 Callus culture/c... 113 4e-033
gb|CN133023.1|CN133023 OX1_9_D11.g1_A002 Oxidatively-stress... 121 9e-033
gb|CW302450.1|CW302450 104_786_11464725_116_35662_085 Sorgh... 121 9e-033
gb|AW745819.1|AW745819 WS1_37_H11.g1_A002 Water-stressed 1 ... 112 9e-033
gb|BE918591.1|BE918591 OV1_8_G11.b1_A002 Ovary 1 (OV1) Sorg... 121 2e-032
gb|AY048375.1| Sorghum bicolor chitinase-B gene, partial cds 110 3e-032
gb|AW678309.1|AW678309 WS1_14_G01.g1_A002 Water-stressed 1 ... 110 1e-031
gb|BG101749.1|BG101749 EM1_5_G10.b1_A002 Embryo 1 (EM1) Sor... 116 1e-031
gb|CW117036.1|CW117036 104_493_11107443_148_34610_016 Sorgh... 135 1e-031
gb|CD229477.1|CD229477 CCC1_16_C07.b1_A007 Callus culture/c... 110 2e-031
gb|CW493211.1|CW493211 fsbb001f283n22k0 Sorghum methylation... 135 4e-031
gb|CW159279.1|CW159279 104_565_11149276_116_36410_010 Sorgh... 107 6e-031
gb|CW204755.1|CW204755 104_632_11186715_116_37060_002 Sorgh... 133 2e-030
gb|CD223155.1|CD223155 CCC1_26_G01.b1_A007 Callus culture/c... 105 2e-030
gb|CD220568.1|CD220568 CCC1_68_B04.b1_A007 Callus culture/c... 105 2e-030
gb|CN130014.1|CN130014 RHOH1_38_F07.g1_A002 Acid- and alkal... 133 2e-030
gb|CD222930.1|CD222930 CCC1_25_F06.b1_A007 Callus culture/c... 116 2e-029
gb|CN137353.1|CN137353 OX1_56_F03.g1_A002 Oxidatively-stres... 129 4e-029
gb|CD429983.1|CD429983 ETH1_16_A10.g1_A002 Ethylene-treated... 118 5e-029
gb|CD229267.1|CD229267 CCC1_14_D09.b1_A007 Callus culture/c... 99 9e-029
gb|CW307371.1|CW307371 104_795_11468105_116_35728_073 Sorgh... 116 3e-028
gb|CW464036.1|CW464036 fsbb001f213a24k0 Sorghum methylation... 116 9e-028
gb|CW284180.1|CW284180 104_760_11409637_148_35487_049 Sorgh... 116 1e-027
gb|CW445566.1|CW445566 fsbb001f170m12f0 Sorghum methylation... 116 1e-027
gb|CW430428.1|CW430428 fsbb001f144c05f0 Sorghum methylation... 124 1e-027
gb|CW350033.1|CW350033 fsbb001f011c12f0 Sorghum methylation... 116 1e-027
gb|CX610094.1|CX610094 ANR1_16_C10.g1_A002 Anaerobic roots ... 122 3e-027
gb|CN151443.1|CN151443 WOUND1_75_B02.g1_A002 Wounded leaves... 119 4e-027
gb|CN125314.1|CN125314 RHOH1_10_G12.b1_A002 Acid- and alkal... 69 6e-027
gb|CW150340.1|CW150340 104_549_11142974_148_36301_051 Sorgh... 122 6e-027
gb|CD423525.1|CD423525 SA1_23_C09.g1_A002 Salicylic acid-tr... 122 6e-027
gb|CN134928.1|CN134928 OX1_29_A10.g1_A002 Oxidatively-stres... 122 6e-027
gb|CX613534.1|CX613534 GABR1_8_E12.g1_A002 GA- or brassinol... 122 6e-027
gb|CX616381.1|CX616381 GABR1_27_C09.g1_A002 GA- or brassino... 122 6e-027
gb|CW265114.1|CW265114 104_734_11231683_148_35261_076 Sorgh... 97 2e-026
gb|DQ190424.1| Sorghum halepense isolate hal6 chitinase-B (... 119 3e-026
gb|CW088904.1|CW088904 104_434_10948392_114_32602_096 Sorgh... 116 3e-026
gb|AW924422.1|AW924422 WS1_69_C06.b1_A002 Water-stressed 1 ... 116 3e-026
gb|CN130329.1|CN130329 RHOH1_40_F08.g1_A002 Acid- and alkal... 119 4e-026
gb|CW388024.1|CW388024 fsbb001f072j20f0 Sorghum methylation... 89 1e-025
gb|CD226725.1|CD226725 CCC1_47_H05.g1_A007 Callus culture/c... 116 4e-025
gb|DQ190423.1| Sorghum halepense isolate hal4 chitinase-B (... 116 4e-025
gb|DQ190422.1| Sorghum halepense isolate hal3 chitinase-B (... 115 7e-025
gb|CW265113.1|CW265113 104_734_11231683_116_35257_076 Sorgh... 86 1e-024
gb|CD464127.1|CD464127 ETH1_48_G10.g1_A002 Ethylene-treated... 113 2e-024
gb|CL191324.1|CL191324 104_410_10906720_114_32533_060 Sorgh... 85 4e-024
gb|CN135214.1|CN135214 OX1_31_G02.b1_A002 Oxidatively-stres... 79 6e-023
gb|CW285685.1|CW285685 104_763_11410466_148_35506_013 Sorgh... 107 2e-022
gb|BG463695.1|BG463695 EM1_50_H02.g1_A002 Embryo 1 (EM1) So... 78 2e-022
gb|CW231901.1|CW231901 104_681_11211372_148_37350_042 Sorgh... 105 6e-022
gb|CW200665.1|CW200665 104_626_11184168_148_36867_092 Sorgh... 94 3e-021
>gb|BE597906.1|BE597906 PI1_66_H02.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 708
Score = 284 bits (615), Expect = 6e-076
Identities = 112/132 (84%), Positives = 114/132 (86%)
Frame = -2 / +2
Query: 473 NYNYGPAGRAIGVDLLNNPDLVATDPVISFKTALWFWMNARDNKPSCHAVITGQWXXXXX 294
NYNYGPAGRAIGVDLLNNPDLVATDPV+SFKTALWFWM ARDNKPSCHAVITGQW
Sbjct: 101 NYNYGPAGRAIGVDLLNNPDLVATDPVVSFKTALWFWMTARDNKPSCHAVITGQWTPTAA 280
Query: 293 XXXXXXXXPGYGVITNIINGGIECGHGTDPRVTDRIGFYKRYCDVFRIGYGSNLDCDGQR 114
PGYGVITNIINGGIECGHG DPRVTDRIGFYKRYCDVFRIGYGSNLDCDGQR
Sbjct: 281 DRAAGRGAPGYGVITNIINGGIECGHGADPRVTDRIGFYKRYCDVFRIGYGSNLDCDGQR 460
Query: 113 PFNSGLAVEVAA 78
PFNS +AVE A
Sbjct: 461 PFNSAVAVEQLA 496
Score = 275 bits (596), Expect = 3e-073
Identities = 120/136 (88%), Positives = 122/136 (89%)
Frame = +1 / -1
Query: 79 AATSTASPLLKGLWPSQSRLLP*PMRKTSQ*RL*KPIRSVTRGSVPCPHSIPPLMMLVIT 258
A+ STA+ LL GLWPSQSRLLP*PMRKTSQ*RL* PIRSVTRGS PCPHSIPPLMMLVIT
Sbjct: 495 ASCSTATALLNGLWPSQSRLLP*PMRKTSQ*RL*NPIRSVTRGSAPCPHSIPPLMMLVIT 316
Query: 259 PYPGAPRPAALSAAVGVHCPVITAWHDGLLSRAFIQNHSAVLKDITGSVATRSGLLRRST 438
PYPGAPRPAALSAAVGVHCPVITAWHDGLLS A IQNHSAVLKD TGSVATRSGL RST
Sbjct: 315 PYPGAPRPAALSAAVGVHCPVITAWHDGLLSLAVIQNHSAVLKDTTGSVATRSGLFSRST 136
Query: 439 PMARPAGP*L*LKEIW 486
PMA PAGP*L*L W
Sbjct: 135 PMALPAGP*L*LLMPW 88
Score = 226 bits (489), Expect = 2e-058
Identities = 100/132 (75%), Positives = 104/132 (78%)
Frame = +3 / -3
Query: 78 RRHLNRQSAIEGPLAVAIEIAPVADAEDIAVALVEANPVGDPGVRPVPALDPTVDDVGDH 257
R+ LN AIE PLAVA+E+APVADAEDIAVALVE +PV PGV PVPALDP VDDVGDH
Sbjct: 496 RQLLNGHRAIERPLAVAVEVAPVADAEDIAVALVEPDPVRHPGVGPVPALDPAVDDVGDH 317
Query: 258 AVPWRAPAGRPVRSRGRPLPRDHGVARRLVVPRVHPEPQRCLEGYHGXXXXXXXXXXXXH 437
AVP RAPAGRPVR R RPLPRDH VARRLVVPR HPEPQR LEGYHG H
Sbjct: 316 AVPRRAPAGRPVRRRRRPLPRDHRVARRLVVPRRHPEPQRRLEGYHGVGRHQVRVVQQVH 137
Query: 438 ADGSPRRAVVVV 473
ADGSPRRAVVVV
Sbjct: 136 ADGSPRRAVVVV 101
Score = 136 bits (291), Expect = 3e-031
Identities = 63/99 (63%), Positives = 66/99 (66%)
Frame = +2 / -2
Query: 80 PPPQPPVRY*RASGRRNXXXXXXXXXXXXXXXXXXQSGR*PGGPSRARTRSHR**CW*SR 259
P Q P RY* ASGRR+ +SG PGG RARTRS R**CW*SR
Sbjct: 494 PAAQRPPRY*TASGRRSRGCSRSRCGRHRSSACRTRSGPSPGGRPRARTRSRR**CW*SR 315
Query: 260 RTLARPGRPPCPQPWASTAP*SRRGTTACCPARSSRTTA 376
RT ARPGRPPCP P ASTAP*S RGTTACCP+ SSRTTA
Sbjct: 314 RTPARPGRPPCPPPSASTAP*SPRGTTACCPSPSSRTTA 198
Score = 75.8 bits (159), Expect(3) = 2e-032
Identities = 32/39 (82%), Positives = 33/39 (84%)
Frame = -1 / +1
Query: 390 ILQDSAVVLDERAGQQAVVPRRDHGAVDAHGCGQGGRPG 274
ILQD AVVLD+ GQQAVVPR DHGAVDA G GQGGRPG
Sbjct: 184 ILQDGAVVLDDGEGQQAVVPRGDHGAVDADGGGQGGRPG 300
Score = 75.3 bits (158), Expect(3) = 2e-032
Identities = 32/40 (80%), Positives = 34/40 (85%)
Frame = -1 / +1
Query: 219 ARDGPPGHRPDWLLQALLRCLPHRLREQSRLRRPEALQ*R 100
AR PPG PD +LQALLRCLPHRLREQ RLRRPEA+Q*R
Sbjct: 355 ARGRPPGDGPDRVLQALLRCLPHRLREQPRLRRPEAVQ*R 474
Score = 27.2 bits (53), Expect(3) = 2e-032
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -1 / +1
Query: 474 QLQLRPGGASH 442
QLQLRPGG SH
Sbjct: 100 QLQLRPGGESH 132
>gb|CW206617.1|CW206617 104_635_11187687_116_36961_058 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11187687, DNA
sequence
Length = 639
Score = 170 bits (365), Expect(2) = 7e-069
Identities = 60/82 (73%), Positives = 70/82 (85%)
Frame = -2 / -1
Query: 554 DYCEPRPQWPCAPGKKYFGRGPIQISFNYNYGPAGRAIGVDLLNNPDLVATDPVISFKTA 375
DYCEP QWPCA GKKY+GRGPIQIS+NYNYG AG+AIG +L NPDLVA+DP +SF+TA
Sbjct: 501 DYCEPSTQWPCAAGKKYYGRGPIQISYNYNYGAAGQAIGAGILANPDLVASDPTVSFETA 322
Query: 374 LWFWMNARDNKPSCHAVITGQW 309
+WFWM + KPSCHAV+TGQW
Sbjct: 321 VWFWMTPQSPKPSCHAVMTGQW 256
Score = 148 bits (318), Expect = 6e-035
Identities = 67/107 (62%), Positives = 74/107 (69%)
Frame = +1 / +2
Query: 235 PLMMLVITPYPGAPRPAALSAAVGVHCPVITAWHDGLLSRAFIQNHSAVLKDITGSVATR 414
P +M+++T PAA+SA GVH PV+TAWHDGL IQNH+AV D GS ATR
Sbjct: 182 PPLMMLVTTPYPGNLPAAVSAPDGVHWPVMTAWHDGLGDCGVIQNHTAVSNDTVGSDATR 361
Query: 415 SGLLRRSTPMARPAGP*L*LKEIWMGPRPKYFLPGAHGHCGRGSQ*S 555
SGL R PMA PA P*L*L EIWMGPRP YF P AHGHC GSQ*S
Sbjct: 362 SGLARMPAPMACPAAP*L*L*EIWMGPRP*YFFPAAHGHCVLGSQ*S 502
Score = 111 bits (238), Expect(2) = 7e-069
Identities = 40/55 (72%), Positives = 45/55 (81%)
Frame = -2 / -1
Query: 266 GYGVITNIINGGIECGHGTDPRVTDRIGFYKRYCDVFRIGYGSNLDCDGQRPFNS 102
GYGV+TNIINGG+ECG G D RV DRIGFYKRYCD+ + YG NLDC Q+PFNS
Sbjct: 216 GYGVVTNIINGGLECGKGADSRVADRIGFYKRYCDLLGVSYGDNLDCANQKPFNS 52
Score = 88.1 bits (186), Expect(3) = 3e-028
Identities = 40/56 (71%), Positives = 42/56 (75%)
Frame = +1 / +2
Query: 103 LLKGLWPSQSRLLP*PMRKTSQ*RL*KPIRSVTRGSVPCPHSIPPLMMLVITPYPG 270
LLKG W +QS+L P* SQ*RL*KPIRS TR S P PHS PPLMMLV TPYPG
Sbjct: 53 LLKGFWLAQSKLSP*LTPSKSQ*RL*KPIRSATRLSAPLPHSRPPLMMLVTTPYPG 220
Score = 41.4 bits (84), Expect(3) = 3e-028
Identities = 22/39 (56%), Positives = 22/39 (56%)
Frame = +3 / +1
Query: 270 RAPAGRPVRSRGRPLPRDHGVARRLVVPRVHPEPQRCLE 386
R P V SR RPL GVARRL R HPEP R LE
Sbjct: 217 RQPPRGGVSSRRRPLAGHDGVARRLGRLRRHPEPHRRLE 333
Score = 34.1 bits (68), Expect(3) = 3e-028
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = +3 / +1
Query: 438 ADGSPRRAVVVVEGDLDGAAA 500
ADG P AVVVV GDLDG+ A
Sbjct: 385 ADGLPGGAVVVVVGDLDGSTA 447
>gb|BE598085.1|BE598085 PI1_65_E11.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 632
Score = 170 bits (365), Expect(2) = 7e-069
Identities = 60/82 (73%), Positives = 70/82 (85%)
Frame = -2 / +2
Query: 554 DYCEPRPQWPCAPGKKYFGRGPIQISFNYNYGPAGRAIGVDLLNNPDLVATDPVISFKTA 375
DYCEP QWPCA GKKY+GRGPIQIS+NYNYG AG+AIG +L NPDLVA+DP +SF+TA
Sbjct: 125 DYCEPSTQWPCAAGKKYYGRGPIQISYNYNYGAAGQAIGAGILANPDLVASDPTVSFETA 304
Query: 374 LWFWMNARDNKPSCHAVITGQW 309
+WFWM + KPSCHAV+TGQW
Sbjct: 305 VWFWMTPQSPKPSCHAVMTGQW 370
Score = 148 bits (318), Expect = 6e-035
Identities = 67/107 (62%), Positives = 74/107 (69%)
Frame = +1 / -3
Query: 235 PLMMLVITPYPGAPRPAALSAAVGVHCPVITAWHDGLLSRAFIQNHSAVLKDITGSVATR 414
P +M+++T PAA+SA GVH PV+TAWHDGL IQNH+AV D GS ATR
Sbjct: 444 PPLMMLVTTPYPGNLPAAVSAPDGVHWPVMTAWHDGLGDCGVIQNHTAVSNDTVGSDATR 265
Query: 415 SGLLRRSTPMARPAGP*L*LKEIWMGPRPKYFLPGAHGHCGRGSQ*S 555
SGL R PMA PA P*L*L EIWMGPRP YF P AHGHC GSQ*S
Sbjct: 264 SGLARMPAPMACPAAP*L*L*EIWMGPRP*YFFPAAHGHCVLGSQ*S 124
Score = 111 bits (238), Expect(2) = 7e-069
Identities = 40/55 (72%), Positives = 45/55 (81%)
Frame = -2 / +2
Query: 266 GYGVITNIINGGIECGHGTDPRVTDRIGFYKRYCDVFRIGYGSNLDCDGQRPFNS 102
GYGV+TNIINGG+ECG G D RV DRIGFYKRYCD+ + YG NLDC Q+PFNS
Sbjct: 410 GYGVVTNIINGGLECGKGADSRVADRIGFYKRYCDLLGVSYGDNLDCANQKPFNS 574
Score = 88.1 bits (186), Expect(3) = 3e-028
Identities = 40/56 (71%), Positives = 42/56 (75%)
Frame = +1 / -3
Query: 103 LLKGLWPSQSRLLP*PMRKTSQ*RL*KPIRSVTRGSVPCPHSIPPLMMLVITPYPG 270
LLKG W +QS+L P* SQ*RL*KPIRS TR S P PHS PPLMMLV TPYPG
Sbjct: 573 LLKGFWLAQSKLSP*LTPSKSQ*RL*KPIRSATRLSAPLPHSRPPLMMLVTTPYPG 406
Score = 41.4 bits (84), Expect(3) = 3e-028
Identities = 22/39 (56%), Positives = 22/39 (56%)
Frame = +3 / -2
Query: 270 RAPAGRPVRSRGRPLPRDHGVARRLVVPRVHPEPQRCLE 386
R P V SR RPL GVARRL R HPEP R LE
Sbjct: 409 RQPPRGGVSSRRRPLAGHDGVARRLGRLRRHPEPHRRLE 293
Score = 34.1 bits (68), Expect(3) = 3e-028
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = +3 / -2
Query: 438 ADGSPRRAVVVVEGDLDGAAA 500
ADG P AVVVV GDLDG+ A
Sbjct: 241 ADGLPGGAVVVVVGDLDGSTA 179
>gb|BE597800.1|BE597800 PI1_65_E11.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 600
Score = 167 bits (359), Expect(2) = 5e-068
Identities = 59/81 (72%), Positives = 69/81 (85%)
Frame = -2 / +3
Query: 551 YCEPRPQWPCAPGKKYFGRGPIQISFNYNYGPAGRAIGVDLLNNPDLVATDPVISFKTAL 372
YCEP QWPCA GKKY+GRGPIQIS+NYNYG AG+AIG +L NPDLVA+DP +SF+TA+
Sbjct: 90 YCEPSTQWPCAAGKKYYGRGPIQISYNYNYGAAGQAIGAGILANPDLVASDPTVSFETAV 269
Query: 371 WFWMNARDNKPSCHAVITGQW 309
WFWM + KPSCHAV+TGQW
Sbjct: 270 WFWMTPQSPKPSCHAVMTGQW 332
Score = 146 bits (313), Expect = 3e-034
Identities = 65/105 (61%), Positives = 72/105 (68%)
Frame = +1 / -3
Query: 235 PLMMLVITPYPGAPRPAALSAAVGVHCPVITAWHDGLLSRAFIQNHSAVLKDITGSVATR 414
P +M+++T PAA+SA GVH PV+TAWHDGL IQNH+AV D GS ATR
Sbjct: 406 PPLMMLVTTPYPGNLPAAVSAPDGVHWPVMTAWHDGLGDCGVIQNHTAVSNDTVGSDATR 227
Query: 415 SGLLRRSTPMARPAGP*L*LKEIWMGPRPKYFLPGAHGHCGRGSQ 549
SGL R PMA PA P*L*L EIWMGPRP YF P AHGHC GSQ
Sbjct: 226 SGLARMPAPMACPAAP*L*L*EIWMGPRP*YFFPAAHGHCVLGSQ 92
Score = 111 bits (238), Expect(2) = 5e-068
Identities = 40/55 (72%), Positives = 45/55 (81%)
Frame = -2 / +3
Query: 266 GYGVITNIINGGIECGHGTDPRVTDRIGFYKRYCDVFRIGYGSNLDCDGQRPFNS 102
GYGV+TNIINGG+ECG G D RV DRIGFYKRYCD+ + YG NLDC Q+PFNS
Sbjct: 372 GYGVVTNIINGGLECGKGADSRVADRIGFYKRYCDLLGVSYGDNLDCANQKPFNS 536
Score = 88.1 bits (186), Expect(3) = 3e-028
Identities = 40/56 (71%), Positives = 42/56 (75%)
Frame = +1 / -3
Query: 103 LLKGLWPSQSRLLP*PMRKTSQ*RL*KPIRSVTRGSVPCPHSIPPLMMLVITPYPG 270
LLKG W +QS+L P* SQ*RL*KPIRS TR S P PHS PPLMMLV TPYPG
Sbjct: 535 LLKGFWLAQSKLSP*LTPSKSQ*RL*KPIRSATRLSAPLPHSRPPLMMLVTTPYPG 368
Score = 41.4 bits (84), Expect(3) = 3e-028
Identities = 22/39 (56%), Positives = 22/39 (56%)
Frame = +3 / -2
Query: 270 RAPAGRPVRSRGRPLPRDHGVARRLVVPRVHPEPQRCLE 386
R P V SR RPL GVARRL R HPEP R LE
Sbjct: 371 RQPPRGGVSSRRRPLAGHDGVARRLGRLRRHPEPHRRLE 255
Score = 34.1 bits (68), Expect(3) = 3e-028
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = +3 / -2
Query: 438 ADGSPRRAVVVVEGDLDGAAA 500
ADG P AVVVV GDLDG+ A
Sbjct: 203 ADGLPGGAVVVVVGDLDGSTA 141
>gb|CW307372.1|CW307372 104_795_11468105_148_35736_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11468105, DNA
sequence
Length = 603
Score = 166 bits (358), Expect(2) = 3e-066
Identities = 59/82 (71%), Positives = 68/82 (82%)
Frame = -2 / +1
Query: 554 DYCEPRPQWPCAPGKKYFGRGPIQISFNYNYGPAGRAIGVDLLNNPDLVATDPVISFKTA 375
DYCEP QWPCA GKKY+GRGPIQIS+NYNYGPAG+AIG +L NPDLVA D +SF+TA
Sbjct: 163 DYCEPSTQWPCAAGKKYYGRGPIQISYNYNYGPAGQAIGAGILANPDLVAADATVSFETA 342
Query: 374 LWFWMNARDNKPSCHAVITGQW 309
+WFWM + KPSCH V+TGQW
Sbjct: 343 VWFWMTPQSPKPSCHDVMTGQW 408
Score = 154 bits (331), Expect = 1e-036
Identities = 67/107 (62%), Positives = 76/107 (71%)
Frame = +1 / -2
Query: 235 PLMMLVITPYPGAPRPAALSAAVGVHCPVITAWHDGLLSRAFIQNHSAVLKDITGSVATR 414
P +M+++T PAA+SAA GVHCPV+T+WHDGL IQNH+AV + S ATR
Sbjct: 482 PPLMMLVTTPYPGNLPAAMSAADGVHCPVMTSWHDGLGDCGVIQNHTAVSNETVASAATR 303
Query: 415 SGLLRRSTPMARPAGP*L*LKEIWMGPRPKYFLPGAHGHCGRGSQ*S 555
SGL R PMA PAGP*L*L EIWMGPRP YF P AHGHC GSQ*S
Sbjct: 302 SGLARMPAPMAWPAGP*L*L*EIWMGPRP*YFFPAAHGHCVLGSQ*S 162
Score = 106 bits (226), Expect(2) = 3e-066
Identities = 38/52 (73%), Positives = 42/52 (80%)
Frame = -2 / +1
Query: 266 GYGVITNIINGGIECGHGTDPRVTDRIGFYKRYCDVFRIGYGSNLDCDGQRP 111
GYGV+TNIINGG+ECGHG D RV DRIGFYKRYCD+ + YG NLDC Q P
Sbjct: 448 GYGVVTNIINGGLECGHGADTRVADRIGFYKRYCDLLGVSYGDNLDCAHQMP 603
Score = 77.1 bits (162), Expect(2) = 4e-027
Identities = 35/53 (66%), Positives = 38/53 (71%)
Frame = +1 / -2
Query: 112 GLWPSQSRLLP*PMRKTSQ*RL*KPIRSVTRGSVPCPHSIPPLMMLVITPYPG 270
G+W +QS+L P* SQ*RL* PI S TR S P PHS PPLMMLV TPYPG
Sbjct: 602 GIWWAQSKLSP*LTPSKSQ*RL*NPILSATRVSAPWPHSRPPLMMLVTTPYPG 444
Score = 65.2 bits (136), Expect(2) = 4e-027
Identities = 38/77 (49%), Positives = 39/77 (50%)
Frame = +3 / -1
Query: 270 RAPAGRPVRSRGRPLPRDHGVARRLVVPRVHPEPQRCLEGYHGXXXXXXXXXXXXHADGS 449
R P V R RPLPR VARRL R HPEP R LE G ADG
Sbjct: 447 RQPPRGDVSCRRRPLPRHDVVARRLGRLRRHPEPHRGLERDGGVGGDKVRVGEDAGADGL 268
Query: 450 PRRAVVVVEGDLDGAAA 500
AVVVV GDLDG+AA
Sbjct: 267 AGGAVVVVVGDLDGSAA 217
>gb|CW388025.1|CW388025 fsbb001f072j20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f072j20, DNA
sequence
Length = 740
Score = 116 bits (248), Expect(3) = 4e-064
Identities = 41/55 (74%), Positives = 47/55 (85%)
Frame = -2 / -1
Query: 266 GYGVITNIINGGIECGHGTDPRVTDRIGFYKRYCDVFRIGYGSNLDCDGQRPFNS 102
GYGV+TNIINGG+ECGHG D RV DRIGFYKRYCD+ + YG+N+DC QRPFNS
Sbjct: 209 GYGVVTNIINGGLECGHGADSRVADRIGFYKRYCDLLGVSYGNNVDCANQRPFNS 45
Score = 89.0 bits (188), Expect(3) = 9e-043
Identities = 41/57 (71%), Positives = 43/57 (75%)
Frame = +1 / +1
Query: 103 LLKGLWPSQSRLLP*PMRKTSQ*RL*KPIRSVTRGSVPCPHSIPPLMMLVITPYPGA 273
LL GLW +QS LLP* SQ*RL*KPIRS TR S P PHS PPLMMLV TPYPG+
Sbjct: 46 LLNGLWLAQSTLLP*LTPSKSQ*RL*KPIRSATRLSAPWPHSRPPLMMLVTTPYPGS 216
Score = 88.6 bits (187), Expect(3) = 4e-064
Identities = 31/41 (75%), Positives = 33/41 (80%)
Frame = -2 / -1
Query: 560 PSDYCEPRPQWPCAPGKKYFGRGPIQISFNYNYGPAGRAIG 438
P YC P WPCA GKKY+GRGPIQIS+NYNYGPAG AIG
Sbjct: 503 PEAYCRPSALWPCAAGKKYYGRGPIQISYNYNYGPAGEAIG 381
Score = 79.9 bits (168), Expect(3) = 4e-064
Identities = 27/41 (65%), Positives = 35/41 (85%)
Frame = -2 / -1
Query: 431 LLNNPDLVATDPVISFKTALWFWMNARDNKPSCHAVITGQW 309
+L++PDLVATD +SF+TA+WFWM + KPSCHAV+TGQW
Sbjct: 371 ILDDPDLVATDATVSFETAVWFWMTPQPPKPSCHAVVTGQW 249
Score = 72.5 bits (152), Expect(3) = 9e-043
Identities = 30/43 (69%), Positives = 32/43 (74%)
Frame = +1 / +1
Query: 433 STPMARPAGP*L*LKEIWMGPRPKYFLPGAHGHCGRGSQ*SDG 561
+ PMA PAGP*L*L EIWMGPRP YF P AHGH G Q*+ G
Sbjct: 376 AAPMASPAGP*L*L*EIWMGPRP*YFFPAAHGHSALGLQ*ASG 504
Score = 51.5 bits (106), Expect(3) = 9e-043
Identities = 25/39 (64%), Positives = 25/39 (64%)
Frame = +3 / +3
Query: 270 RAPAGRPVRSRGRPLPRDHGVARRLVVPRVHPEPQRCLE 386
R PAG V R RPLPRD GVARRL R HPEP LE
Sbjct: 210 RQPAGGGVGRRRRPLPRDDGVARRLGRLRRHPEPDGGLE 326
>gb|BZ338038.1|BZ338038 ia92e12.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ia92e12 5', DNA sequence
Length = 608
Score = 116 bits (248), Expect(3) = 4e-064
Identities = 41/55 (74%), Positives = 47/55 (85%)
Frame = -2 / -1
Query: 266 GYGVITNIINGGIECGHGTDPRVTDRIGFYKRYCDVFRIGYGSNLDCDGQRPFNS 102
GYGV+TNIINGG+ECGHG D RV DRIGFYKRYCD+ + YG+N+DC QRPFNS
Sbjct: 200 GYGVVTNIINGGLECGHGADSRVADRIGFYKRYCDLLGVSYGNNVDCANQRPFNS 36
Score = 89.0 bits (188), Expect(3) = 4e-042
Identities = 41/57 (71%), Positives = 43/57 (75%)
Frame = +1 / +1
Query: 103 LLKGLWPSQSRLLP*PMRKTSQ*RL*KPIRSVTRGSVPCPHSIPPLMMLVITPYPGA 273
LL GLW +QS LLP* SQ*RL*KPIRS TR S P PHS PPLMMLV TPYPG+
Sbjct: 37 LLNGLWLAQSTLLP*LTPSKSQ*RL*KPIRSATRLSAPWPHSRPPLMMLVTTPYPGS 207
Score = 88.6 bits (187), Expect(3) = 4e-064
Identities = 31/41 (75%), Positives = 33/41 (80%)
Frame = -2 / -1
Query: 560 PSDYCEPRPQWPCAPGKKYFGRGPIQISFNYNYGPAGRAIG 438
P YC P WPCA GKKY+GRGPIQIS+NYNYGPAG AIG
Sbjct: 494 PEAYCRPSALWPCAAGKKYYGRGPIQISYNYNYGPAGEAIG 372
Score = 79.9 bits (168), Expect(3) = 4e-064
Identities = 27/41 (65%), Positives = 35/41 (85%)
Frame = -2 / -1
Query: 431 LLNNPDLVATDPVISFKTALWFWMNARDNKPSCHAVITGQW 309
+L++PDLVATD +SF+TA+WFWM + KPSCHAV+TGQW
Sbjct: 362 ILDDPDLVATDATVSFETAVWFWMTPQPPKPSCHAVVTGQW 240
Score = 70.3 bits (147), Expect(3) = 4e-042
Identities = 29/43 (67%), Positives = 31/43 (72%)
Frame = +1 / +1
Query: 433 STPMARPAGP*L*LKEIWMGPRPKYFLPGAHGHCGRGSQ*SDG 561
+ PMA PAGP*L*L EIWMGPRP YF P AHGH G Q + G
Sbjct: 367 AAPMASPAGP*L*L*EIWMGPRP*YFFPAAHGHSALGLQXASG 495
Score = 51.5 bits (106), Expect(3) = 4e-042
Identities = 25/39 (64%), Positives = 25/39 (64%)
Frame = +3 / +3
Query: 270 RAPAGRPVRSRGRPLPRDHGVARRLVVPRVHPEPQRCLE 386
R PAG V R RPLPRD GVARRL R HPEP LE
Sbjct: 201 RQPAGGGVGRRRRPLPRDDGVARRLGRLRRHPEPDGGLE 317
>gb|BE367523.1|BE367523 PI1_8_E06.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 520
Score = 140 bits (301), Expect(2) = 4e-060
Identities = 51/71 (71%), Positives = 61/71 (85%)
Frame = -2 / +3
Query: 521 APGKKYFGRGPIQISFNYNYGPAGRAIGVDLLNNPDLVATDPVISFKTALWFWMNARDNK 342
A GKKY+GRGPIQIS+NYNYG AG+AIG +L NPDLVA+DP +SF+TA+WFWM + K
Sbjct: 3 AAGKKYYGRGPIQISYNYNYGAAGQAIGAGILANPDLVASDPTVSFETAVWFWMTPQSPK 182
Query: 341 PSCHAVITGQW 309
PSCHAV+TGQW
Sbjct: 183 PSCHAVMTGQW 215
Score = 127 bits (272), Expect = 1e-028
Identities = 58/96 (60%), Positives = 65/96 (67%)
Frame = +1 / -1
Query: 235 PLMMLVITPYPGAPRPAALSAAVGVHCPVITAWHDGLLSRAFIQNHSAVLKDITGSVATR 414
P +M+++T PAA+SA GVH PV+TAWHDGL IQNH+AV D GS ATR
Sbjct: 289 PPLMMLVTTPYPGNLPAAVSAPDGVHWPVMTAWHDGLGDCGVIQNHTAVSNDTVGSDATR 110
Query: 415 SGLLRRSTPMARPAGP*L*LKEIWMGPRPKYFLPGA 522
SGL R PMA PA P*L*L EIWMGPRP YF P A
Sbjct: 109 SGLARMPAPMACPAAP*L*L*EIWMGPRP*YFFPAA 2
Score = 111 bits (238), Expect(2) = 4e-060
Identities = 40/55 (72%), Positives = 45/55 (81%)
Frame = -2 / +3
Query: 266 GYGVITNIINGGIECGHGTDPRVTDRIGFYKRYCDVFRIGYGSNLDCDGQRPFNS 102
GYGV+TNIINGG+ECG G D RV DRIGFYKRYCD+ + YG NLDC Q+PFNS
Sbjct: 255 GYGVVTNIINGGLECGKGADSRVADRIGFYKRYCDLLGVSYGDNLDCANQKPFNS 419
Score = 88.1 bits (186), Expect(3) = 3e-028
Identities = 40/56 (71%), Positives = 42/56 (75%)
Frame = +1 / -1
Query: 103 LLKGLWPSQSRLLP*PMRKTSQ*RL*KPIRSVTRGSVPCPHSIPPLMMLVITPYPG 270
LLKG W +QS+L P* SQ*RL*KPIRS TR S P PHS PPLMMLV TPYPG
Sbjct: 418 LLKGFWLAQSKLSP*LTPSKSQ*RL*KPIRSATRLSAPLPHSRPPLMMLVTTPYPG 251
Score = 41.4 bits (84), Expect(3) = 3e-028
Identities = 22/39 (56%), Positives = 22/39 (56%)
Frame = +3 / -3
Query: 270 RAPAGRPVRSRGRPLPRDHGVARRLVVPRVHPEPQRCLE 386
R P V SR RPL GVARRL R HPEP R LE
Sbjct: 254 RQPPRGGVSSRRRPLAGHDGVARRLGRLRRHPEPHRRLE 138
Score = 34.1 bits (68), Expect(3) = 3e-028
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = +3 / -3
Query: 438 ADGSPRRAVVVVEGDLDGAAA 500
ADG P AVVVV GDLDG+ A
Sbjct: 86 ADGLPGGAVVVVVGDLDGSTA 24
>gb|BE366378.1|BE366378 PI1_32_H10.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 454
Score = 117 bits (251), Expect(2) = 1e-052
Identities = 43/63 (68%), Positives = 53/63 (84%)
Frame = -2 / +1
Query: 500 GRGPIQISFNYNYGPAGRAIGVDLLNNPDLVATDPVISFKTALWFWMNARDNKPSCHAVI 321
GRGPIQIS+NY YG AG+AIG +L NPDLVA+DP +SF+TA+WFW+ + KPSCHAV+
Sbjct: 1 GRGPIQISYNYKYGAAGQAIGAGILANPDLVASDPTVSFETAVWFWITPQSPKPSCHAVM 180
Query: 320 TGQ 312
TGQ
Sbjct: 181 TGQ 189
Score = 111 bits (236), Expect = 1e-023
Identities = 51/88 (57%), Positives = 58/88 (65%)
Frame = +1 / -3
Query: 235 PLMMLVITPYPGAPRPAALSAAVGVHCPVITAWHDGLLSRAFIQNHSAVLKDITGSVATR 414
P +M+++T PA +SA GVH PV+TAWHDGL IQNH+AV D GS ATR
Sbjct: 266 PPLMMLVTTPYPGNLPAGVSAPDGVHWPVMTAWHDGLGDCGVIQNHTAVSNDTVGSDATR 87
Query: 415 SGLLRRSTPMARPAGP*L*LKEIWMGPR 498
SGL R PMA PA P L*L EIWMGPR
Sbjct: 86 SGLARMPAPMACPAAPYL*L*EIWMGPR 3
Score = 109 bits (233), Expect(2) = 1e-052
Identities = 39/54 (72%), Positives = 45/54 (83%)
Frame = -2 / +1
Query: 266 GYGVITNIINGGIECGHGTDPRVTDRIGFYKRYCDVFRIGYGSNLDCDGQRPFN 105
GYGV+TNIINGG+ECG G D RV+DRIGFYKRYCD+ + YG NLDC Q+PFN
Sbjct: 232 GYGVVTNIINGGLECGKGADSRVSDRIGFYKRYCDLLGVRYGDNLDCANQKPFN 393
>gb|CF760116.1|CF760116 DSAF1_55_F11.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_55_F11_A011 5', mRNA sequence
Length = 527
Score = 114 bits (244), Expect(2) = 3e-052
Identities = 41/59 (69%), Positives = 50/59 (84%)
Frame = -2 / +3
Query: 485 QISFNYNYGPAGRAIGVDLLNNPDLVATDPVISFKTALWFWMNARDNKPSCHAVITGQW 309
QIS+NYNYG AG+AIG +L NPDLVA+DP +SF+TA+WFWM + KPSCHAV+TGQW
Sbjct: 3 QISYNYNYGAAGQAIGAGILANPDLVASDPTVSFETAVWFWMTPQSPKPSCHAVMTGQW 179
Score = 111 bits (238), Expect(2) = 3e-052
Identities = 40/55 (72%), Positives = 45/55 (81%)
Frame = -2 / +3
Query: 266 GYGVITNIINGGIECGHGTDPRVTDRIGFYKRYCDVFRIGYGSNLDCDGQRPFNS 102
GYGV+TNIINGG+ECG G D RV DRIGFYKRYCD+ + YG NLDC Q+PFNS
Sbjct: 219 GYGVVTNIINGGLECGKGADSRVADRIGFYKRYCDLLGVSYGDNLDCANQKPFNS 383
Score = 104 bits (222), Expect = 1e-021
Identities = 49/84 (58%), Positives = 56/84 (66%)
Frame = +1 / -2
Query: 235 PLMMLVITPYPGAPRPAALSAAVGVHCPVITAWHDGLLSRAFIQNHSAVLKDITGSVATR 414
P +M+++T PAA+SA GVH PV+TAWHDGL IQNH+AV D GS ATR
Sbjct: 253 PPLMMLVTTPYPGNLPAAVSAPDGVHWPVMTAWHDGLGDCGVIQNHTAVSNDTVGSDATR 74
Query: 415 SGLLRRSTPMARPAGP*L*LKEIW 486
SGL R PMA PA P*L*L EIW
Sbjct: 73 SGLARMPAPMACPAAP*L*L*EIW 2
Score = 88.1 bits (186), Expect(3) = 7e-026
Identities = 40/56 (71%), Positives = 42/56 (75%)
Frame = +1 / -2
Query: 103 LLKGLWPSQSRLLP*PMRKTSQ*RL*KPIRSVTRGSVPCPHSIPPLMMLVITPYPG 270
LLKG W +QS+L P* SQ*RL*KPIRS TR S P PHS PPLMMLV TPYPG
Sbjct: 382 LLKGFWLAQSKLSP*LTPSKSQ*RL*KPIRSATRLSAPLPHSRPPLMMLVTTPYPG 215
Score = 41.4 bits (84), Expect(3) = 7e-026
Identities = 22/39 (56%), Positives = 22/39 (56%)
Frame = +3 / -1
Query: 270 RAPAGRPVRSRGRPLPRDHGVARRLVVPRVHPEPQRCLE 386
R P V SR RPL GVARRL R HPEP R LE
Sbjct: 218 RQPPRGGVSSRRRPLAGHDGVARRLGRLRRHPEPHRRLE 102
Score = 26.3 bits (51), Expect(3) = 7e-026
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = +3 / -1
Query: 438 ADGSPRRAVVVVEGDL 485
ADG P AVVVV GDL
Sbjct: 50 ADGLPGGAVVVVVGDL 3
>gb|CW430429.1|CW430429 fsbb001f144c05k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f144c05, DNA
sequence
Length = 746
Score = 129 bits (276), Expect(2) = 1e-049
Identities = 46/75 (61%), Positives = 58/75 (77%)
Frame = -2 / -1
Query: 533 QWPCAPGKKYFGRGPIQISFNYNYGPAGRAIGVDLLNNPDLVATDPVISFKTALWFWMNA 354
QWPC PGK Y GRGPIQ+S+N+NYGPAG+A+G D L NP++VA +F+TALWFWM
Sbjct: 638 QWPCYPGKSYHGRGPIQLSWNFNYGPAGQALGFDGLRNPEVVANCSETAFRTALWFWMTP 459
Query: 353 RDNKPSCHAVITGQW 309
R KPSCH V+ G++
Sbjct: 458 RRPKPSCHEVMVGEY 414
Score = 118 bits (253), Expect = 6e-026
Identities = 54/100 (54%), Positives = 65/100 (65%)
Frame = +1 / +1
Query: 235 PLMMLVITPYPGAPRPAALSAAVGVHCPVITAWHDGLLSRAFIQNHSAVLKDITGSVATR 414
P + +++T A R AA SAAVG + P +T+WHDGL R IQNHSAV ++ +AT
Sbjct: 340 PPLTMLVTSPNPAVRLAAASAAVGRYSPTMTSWHDGLGRRGVIQNHSAVRNAVSEQLATT 519
Query: 415 SGLLRRSTPMARPAGP*L*LKEIWMGPRPKYFLPGAHGHC 534
SGL R S P A PAGP*L + WMGPRP LPG HGHC
Sbjct: 520 SGLRRPSKPSACPAGP*LKFHDSWMGPRPW*DLPG*HGHC 639
Score = 88.1 bits (186), Expect(2) = 1e-049
Identities = 29/53 (54%), Positives = 41/53 (77%)
Frame = -2 / -1
Query: 266 GYGVITNIINGGIECGHGTDPRVTDRIGFYKRYCDVFRIGYGSNLDCDGQRPF 108
G+G++TNI+NGG+EC D RV +RIGFY+RYC +F + G+NLDC Q+P+
Sbjct: 374 GFGLVTNIVNGGLECNRTDDARVNNRIGFYQRYCQIFNVDAGANLDCAHQQPY 216
>gb|CN137269.1|CN137269 OX1_56_F03.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_56_F03_A002 3', mRNA sequence
Length = 599
Score = 129 bits (276), Expect(2) = 1e-049
Identities = 46/75 (61%), Positives = 58/75 (77%)
Frame = -2 / +3
Query: 533 QWPCAPGKKYFGRGPIQISFNYNYGPAGRAIGVDLLNNPDLVATDPVISFKTALWFWMNA 354
QWPC PGK Y GRGPIQ+S+N+NYGPAG+A+G D L NP++VA +F+TALWFWM
Sbjct: 87 QWPCYPGKSYHGRGPIQLSWNFNYGPAGQALGFDGLRNPEVVANCSETAFRTALWFWMTP 266
Query: 353 RDNKPSCHAVITGQW 309
R KPSCH V+ G++
Sbjct: 267 RRPKPSCHEVMVGEY 311
Score = 118 bits (253), Expect = 6e-026
Identities = 54/100 (54%), Positives = 65/100 (65%)
Frame = +1 / -2
Query: 235 PLMMLVITPYPGAPRPAALSAAVGVHCPVITAWHDGLLSRAFIQNHSAVLKDITGSVATR 414
P + +++T A R AA SAAVG + P +T+WHDGL R IQNHSAV ++ +AT
Sbjct: 385 PPLTMLVTSPNPAVRLAAASAAVGRYSPTMTSWHDGLGRRGVIQNHSAVRNAVSEQLATT 206
Query: 415 SGLLRRSTPMARPAGP*L*LKEIWMGPRPKYFLPGAHGHC 534
SGL R S P A PAGP*L + WMGPRP LPG HGHC
Sbjct: 205 SGLRRPSKPSACPAGP*LKFHDSWMGPRPW*DLPG*HGHC 86
Score = 88.1 bits (186), Expect(2) = 1e-049
Identities = 29/53 (54%), Positives = 41/53 (77%)
Frame = -2 / +3
Query: 266 GYGVITNIINGGIECGHGTDPRVTDRIGFYKRYCDVFRIGYGSNLDCDGQRPF 108
G+G++TNI+NGG+EC D RV +RIGFY+RYC +F + G+NLDC Q+P+
Sbjct: 351 GFGLVTNIVNGGLECNRTDDARVNNRIGFYQRYCQIFNVDAGANLDCAHQQPY 509
>gb|BE598196.1|BE598196 PI1_66_H02.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 359
Score = 141 bits (302), Expect(2) = 9e-049
Identities = 53/55 (96%), Positives = 54/55 (98%)
Frame = -2 / +3
Query: 473 NYNYGPAGRAIGVDLLNNPDLVATDPVISFKTALWFWMNARDNKPSCHAVITGQW 309
NYNYGPAGRAIGVDLLNNPDLVATDPV+SFKTALWFWM ARDNKPSCHAVITGQW
Sbjct: 189 NYNYGPAGRAIGVDLLNNPDLVATDPVVSFKTALWFWMTARDNKPSCHAVITGQW 353
Score = 120 bits (256), Expect(2) = 2e-039
Identities = 52/61 (85%), Positives = 52/61 (85%)
Frame = +1 / -2
Query: 304 GVHCPVITAWHDGLLSRAFIQNHSAVLKDITGSVATRSGLLRRSTPMARPAGP*L*LKEI 483
GVHCPVITAWHDGLLS A IQNHSAVLKD TGSVATRSGL RSTPMA PAGP*L*L
Sbjct: 358 GVHCPVITAWHDGLLSLAVIQNHSAVLKDTTGSVATRSGLFSRSTPMALPAGP*L*LLMP 179
Query: 484 W 486
W
Sbjct: 178 W 176
Score = 95.5 bits (202), Expect(2) = 9e-021
Identities = 41/56 (73%), Positives = 41/56 (73%)
Frame = +3 / -1
Query: 306 RPLPRDHGVARRLVVPRVHPEPQRCLEGYHGXXXXXXXXXXXXHADGSPRRAVVVV 473
RPLPRDH VARRLVVPR HPEPQR LEGYHG HADGSPRRAVVVV
Sbjct: 356 RPLPRDHRVARRLVVPRRHPEPQRRLEGYHGVGRHQVRVVQQVHADGSPRRAVVVV 189
Score = 73.0 bits (153), Expect(2) = 9e-049
Identities = 24/26 (92%), Positives = 26/26 (100%)
Frame = -2 / +1
Query: 554 DYCEPRPQWPCAPGKKYFGRGPIQIS 477
DYC+PRP+WPCAPGKKYFGRGPIQIS
Sbjct: 10 DYCQPRPEWPCAPGKKYFGRGPIQIS 87
Score = 62.9 bits (131), Expect(2) = 2e-039
Identities = 24/27 (88%), Positives = 24/27 (88%)
Frame = +1 / -1
Query: 475 KEIWMGPRPKYFLPGAHGHCGRGSQ*S 555
KEIWMGPRPKYFLPGA GH GRG Q*S
Sbjct: 89 KEIWMGPRPKYFLPGAQGHSGRGWQ*S 9
Score = 24.9 bits (48), Expect(2) = 9e-021
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +3 / -3
Query: 471 VEGDLDGAAAE 503
++GDLDGAAAE
Sbjct: 93 LQGDLDGAAAE 61
>gb|CN130255.1|CN130255 RHOH1_40_F08.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_40_F08_A002 3', mRNA sequence
Length = 632
Score = 123 bits (263), Expect(2) = 9e-048
Identities = 45/75 (60%), Positives = 57/75 (76%)
Frame = -2 / +3
Query: 533 QWPCAPGKKYFGRGPIQISFNYNYGPAGRAIGVDLLNNPDLVATDPVISFKTALWFWMNA 354
QWPC PGK Y GRGPIQ+S+N+NYGPAG+A+G D L NP++VA +F+TAL FWM
Sbjct: 84 QWPCYPGKSYHGRGPIQLSWNFNYGPAGQALGFDGLRNPEVVANCSETAFRTALCFWMTP 263
Query: 353 RDNKPSCHAVITGQW 309
R KPSCH V+ G++
Sbjct: 264 RRPKPSCHEVMVGEY 308
Score = 116 bits (247), Expect = 4e-025
Identities = 53/100 (53%), Positives = 64/100 (64%)
Frame = +1 / -2
Query: 235 PLMMLVITPYPGAPRPAALSAAVGVHCPVITAWHDGLLSRAFIQNHSAVLKDITGSVATR 414
P + +++T A R AA SAAVG + P +T+WHDGL R IQ HSAV ++ +AT
Sbjct: 382 PPLTMLVTSPNPAVRLAAASAAVGRYSPTMTSWHDGLGRRGVIQKHSAVRNAVSEQLATT 203
Query: 415 SGLLRRSTPMARPAGP*L*LKEIWMGPRPKYFLPGAHGHC 534
SGL R S P A PAGP*L + WMGPRP LPG HGHC
Sbjct: 202 SGLRRPSKPSACPAGP*LKFHDSWMGPRPW*DLPG*HGHC 83
Score = 88.1 bits (186), Expect(2) = 9e-048
Identities = 29/53 (54%), Positives = 41/53 (77%)
Frame = -2 / +3
Query: 266 GYGVITNIINGGIECGHGTDPRVTDRIGFYKRYCDVFRIGYGSNLDCDGQRPF 108
G+G++TNI+NGG+EC D RV +RIGFY+RYC +F + G+NLDC Q+P+
Sbjct: 348 GFGLVTNIVNGGLECNRTDDARVNNRIGFYQRYCQIFNVDAGANLDCAHQQPY 506
>gb|CN129927.1|CN129927 RHOH1_38_F07.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_38_F07_A002 3', mRNA sequence
Length = 809
Score = 133 bits (285), Expect(3) = 6e-046
Identities = 46/75 (61%), Positives = 60/75 (80%)
Frame = -2 / +1
Query: 533 QWPCAPGKKYFGRGPIQISFNYNYGPAGRAIGVDLLNNPDLVATDPVISFKTALWFWMNA 354
+WPC G+ Y GRGPIQ+S+N+NYGPAG+A+G D L NP++VA DP ++FKTALWFWM
Sbjct: 280 EWPCVAGESYHGRGPIQLSWNFNYGPAGQALGFDGLGNPEVVAGDPEVAFKTALWFWMTP 459
Query: 353 RDNKPSCHAVITGQW 309
R KPSCH V+ G++
Sbjct: 460 RSPKPSCHDVMVGRY 504
Score = 107 bits (229), Expect(2) = 4e-024
Identities = 50/99 (50%), Positives = 61/99 (61%)
Frame = +1 / -1
Query: 235 PLMMLVITPYPGAPRPAALSAAVGVHCPVITAWHDGLLSRAFIQNHSAVLKDITGSVATR 414
P +++++ A AA SA+VG + P +T+WHDGL IQNHSAVL +GS AT
Sbjct: 578 PPLIMLVVSPNPAVLFAATSASVGRYRPTMTSWHDGLGDLGVIQNHSAVLNATSGSPATT 399
Query: 415 SGLLRRSTPMARPAGP*L*LKEIWMGPRPKYFLPGAHGH 531
SGL S P A PAGP*L + WMGPRP Y P HGH
Sbjct: 398 SGLPSPSKPSACPAGP*LKFHDSWMGPRPWYDSPATHGH 282
Score = 64.8 bits (135), Expect(3) = 6e-046
Identities = 23/36 (63%), Positives = 30/36 (83%)
Frame = -2 / +1
Query: 266 GYGVITNIINGGIECGHGTDPRVTDRIGFYKRYCDV 159
G+G+ TNIINGGIECG P+V DRIGF++RYC++
Sbjct: 544 GFGLTTNIINGGIECGKTGVPQVDDRIGFFRRYCEL 651
Score = 25.4 bits (49), Expect(3) = 6e-046
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -2 / +1
Query: 152 IGYGSNLDCDGQRPFNS 102
+ G NLDC Q+P++S
Sbjct: 661 VDVGPNLDCTQQQPYSS 711
Score = 24.4 bits (47), Expect(2) = 4e-024
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2 / -2
Query: 185 QSGR*PGGPSRARTRSHR**C 247
+SGR P G RTR **C
Sbjct: 625 RSGRPPAGRQSCRTRCRH**C 563
>gb|CW263590.1|CW263590 104_731_11230799_148_35217_082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11230799, DNA
sequence
Length = 583
Score = 133 bits (285), Expect(3) = 6e-046
Identities = 46/75 (61%), Positives = 60/75 (80%)
Frame = -2 / -2
Query: 533 QWPCAPGKKYFGRGPIQISFNYNYGPAGRAIGVDLLNNPDLVATDPVISFKTALWFWMNA 354
+WPC G+ Y GRGPIQ+S+N+NYGPAG+A+G D L NP++VA DP ++FKTALWFWM
Sbjct: 522 EWPCVAGESYHGRGPIQLSWNFNYGPAGQALGFDGLGNPEVVAGDPEVAFKTALWFWMTP 343
Query: 353 RDNKPSCHAVITGQW 309
R KPSCH V+ G++
Sbjct: 342 RSPKPSCHDVMVGRY 298
Score = 100 bits (214), Expect(2) = 4e-022
Identities = 49/99 (49%), Positives = 60/99 (60%)
Frame = +1 / +2
Query: 235 PLMMLVITPYPGAPRPAALSAAVGVHCPVITAWHDGLLSRAFIQNHSAVLKDITGSVATR 414
P +++++ A AA SA+VG + P +T+ HDGL IQNHSAVL +GS AT
Sbjct: 224 PPLIMLVVSPNPAVLFAATSASVGRYRPTMTS*HDGLGDLGVIQNHSAVLNATSGSPATT 403
Query: 415 SGLLRRSTPMARPAGP*L*LKEIWMGPRPKYFLPGAHGH 531
SGL S P A PAGP*L + WMGPRP Y P HGH
Sbjct: 404 SGLPSPSKPSACPAGP*LKFHDSWMGPRPWYDSPATHGH 520
Score = 64.8 bits (135), Expect(3) = 6e-046
Identities = 23/36 (63%), Positives = 30/36 (83%)
Frame = -2 / -2
Query: 266 GYGVITNIINGGIECGHGTDPRVTDRIGFYKRYCDV 159
G+G+ TNIINGGIECG P+V DRIGF++RYC++
Sbjct: 258 GFGLTTNIINGGIECGKTGVPQVDDRIGFFRRYCEL 151
Score = 25.4 bits (49), Expect(3) = 6e-046
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -2 / -2
Query: 152 IGYGSNLDCDGQRPFNS 102
+ G NLDC Q+P++S
Sbjct: 141 VDVGPNLDCTQQQPYSS 91
Score = 24.4 bits (47), Expect(2) = 4e-022
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2 / +3
Query: 185 QSGR*PGGPSRARTRSHR**C 247
+SGR P G RTR **C
Sbjct: 177 RSGRPPAGRQSCRTRCRH**C 239
>gb|CW470070.1|CW470070 fsbb001f223b16f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f223b16, DNA
sequence
Length = 452
Score = 116 bits (248), Expect(2) = 1e-044
Identities = 42/61 (68%), Positives = 48/61 (78%)
Frame = -2 / -1
Query: 266 GYGVITNIINGGIECGHGTDPRVTDRIGFYKRYCDVFRIGYGSNLDCDGQRPFNSGLAVE 87
GYGV+TNIINGG+ECGHG D RV DRIGFYKRYCD+ + YG NLDC Q PFNS A+
Sbjct: 263 GYGVVTNIINGGLECGHGADTRVADRIGFYKRYCDLLGVSYGDNLDCANQMPFNSS*AIY 84
Query: 86 V 84
+
Sbjct: 83 I 81
Score = 84.5 bits (178), Expect(2) = 1e-044
Identities = 30/50 (60%), Positives = 37/50 (74%)
Frame = -2 / -1
Query: 458 PAGRAIGVDLLNNPDLVATDPVISFKTALWFWMNARDNKPSCHAVITGQW 309
P G+AIG +L NPDLVA D +S +TA+WFWM + KPSCH V+TGQW
Sbjct: 452 PPGQAIGAGILANPDLVAADATVSLETAVWFWMTPQSPKPSCHDVMTGQW 303
Score = 83.5 bits (176), Expect(2) = 4e-022
Identities = 38/56 (67%), Positives = 41/56 (73%)
Frame = +1 / +1
Query: 103 LLKGLWPSQSRLLP*PMRKTSQ*RL*KPIRSVTRGSVPCPHSIPPLMMLVITPYPG 270
LLKG+W +QS+L P* SQ*RL* PI S TR S P PHS PPLMMLV TPYPG
Sbjct: 100 LLKGIWLAQSKLSP*LTPSKSQ*RL*NPILSATRVSAPWPHSRPPLMMLVTTPYPG 267
Score = 41.8 bits (85), Expect(2) = 4e-022
Identities = 25/59 (42%), Positives = 26/59 (44%)
Frame = +3 / +3
Query: 270 RAPAGRPVRSRGRPLPRDHGVARRLVVPRVHPEPQRCLEGYHGXXXXXXXXXXXXHADG 446
R P V R RPLPR VARRL R HPEP R L+ G ADG
Sbjct: 264 RQPPRGDVSCRRRPLPRHDVVARRLGRLRRHPEPHRGLQRDGGVGGDKVRVGEDAGADG 440
>gb|BE358858.1|BE358858 DG1_32_F07.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 655
Score = 118 bits (253), Expect(3) = 6e-042
Identities = 40/66 (60%), Positives = 55/66 (83%)
Frame = -2 / +3
Query: 506 YFGRGPIQISFNYNYGPAGRAIGVDLLNNPDLVATDPVISFKTALWFWMNARDNKPSCHA 327
Y+GRGPIQ++ YNY AG+A+ ++L+ NPDLV++DPV++FKTA+WFWM + KPSCHA
Sbjct: 39 YYGRGPIQLTHEYNYRQAGQALNLNLVGNPDLVSSDPVVAFKTAIWFWMTPQSPKPSCHA 218
Query: 326 VITGQW 309
V+TG W
Sbjct: 219 VMTGSW 236
Score = 49.6 bits (102), Expect(3) = 6e-042
Identities = 15/29 (51%), Positives = 22/29 (75%)
Frame = -2 / +3
Query: 194 DRIGFYKRYCDVFRIGYGSNLDCDGQRPF 108
DR+G+YKRY D+ R+ YG N+ C Q+P+
Sbjct: 351 DRVGYYKRYSDMLRVRYGDNIACKDQKPY 437
Score = 41.8 bits (85), Expect(3) = 6e-042
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = -2 / +3
Query: 266 GYGVITNIINGGIECGHG 213
GYGV TNIINGG+ECG G
Sbjct: 276 GYGVTTNIINGGMECGKG 329
>gb|CW488277.1|CW488277 fsbb001f254j12f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f254j12, DNA
sequence
Length = 507
Score = 170 bits (365), Expect = 2e-041
Identities = 60/82 (73%), Positives = 70/82 (85%)
Frame = -2 / -3
Query: 554 DYCEPRPQWPCAPGKKYFGRGPIQISFNYNYGPAGRAIGVDLLNNPDLVATDPVISFKTA 375
DYCEP QWPCA GKKY+GRGPIQIS+NYNYG AG+AIG +L NPDLVA+DP +SF+TA
Sbjct: 319 DYCEPSTQWPCAAGKKYYGRGPIQISYNYNYGAAGQAIGAGILANPDLVASDPTVSFETA 140
Query: 374 LWFWMNARDNKPSCHAVITGQW 309
+WFWM + KPSCHAV+TGQW
Sbjct: 139 VWFWMTPQSPKPSCHAVMTGQW 74
Score = 144 bits (309), Expect = 1e-033
Identities = 64/92 (69%), Positives = 67/92 (72%)
Frame = +1 / +3
Query: 280 PAALSAAVGVHCPVITAWHDGLLSRAFIQNHSAVLKDITGSVATRSGLLRRSTPMARPAG 459
PAA+SA GVH PV+TAWHDGL IQNH+AV D GS ATRSGL R PMA PA
Sbjct: 45 PAAVSAPDGVHWPVMTAWHDGLGDCGVIQNHTAVSNDTVGSDATRSGLARMPAPMACPAA 224
Query: 460 P*L*LKEIWMGPRPKYFLPGAHGHCGRGSQ*S 555
P*L*L EIWMGPRP YF P AHGHC GSQ*S
Sbjct: 225 P*L*L*EIWMGPRP*YFFPAAHGHCVLGSQ*S 320
>gb|BE357811.1|BE357811 DG1_22_D10.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 624
Score = 136 bits (291), Expect(2) = 1e-040
Identities = 50/59 (84%), Positives = 54/59 (91%)
Frame = -2 / +2
Query: 533 QWPCAPGKKYFGRGPIQISFNYNYGPAGRAIGVDLLNNPDLVATDPVISFKTALWFWMN 357
QWPCAPGKKY+GRGP+QIS+NYNYGPAG+AIG D L NPD VA DPVISFKTALWFWMN
Sbjct: 44 QWPCAPGKKYYGRGPLQISWNYNYGPAGKAIGFDGLGNPDKVAQDPVISFKTALWFWMN 220
Score = 51.5 bits (106), Expect(2) = 1e-040
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = -2 / +2
Query: 266 GYGVITNIINGGIECGHGTDPRVTDRIGFYKRYCDVFRIGYGSNLDC 126
G+G ING +EC V R+G+YK YC F + G+NL C
Sbjct: 245 GFGATIRAINGALECNGKNPGAVNARVGYYKDYCKQFGVDPGNNLTC 385
>gb|CW489486.1|CW489486 fsbb001f274h04f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f274h04, DNA
sequence
Length = 597
Score = 136 bits (291), Expect(2) = 1e-040
Identities = 50/59 (84%), Positives = 54/59 (91%)
Frame = -2 / +1
Query: 533 QWPCAPGKKYFGRGPIQISFNYNYGPAGRAIGVDLLNNPDLVATDPVISFKTALWFWMN 357
QWPCAPGKKY+GRGP+QIS+NYNYGPAG+AIG D L NPD VA DPVISFKTALWFWMN
Sbjct: 64 QWPCAPGKKYYGRGPLQISWNYNYGPAGKAIGFDGLGNPDKVAQDPVISFKTALWFWMN 240
Score = 51.5 bits (106), Expect(2) = 1e-040
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = -2 / +1
Query: 266 GYGVITNIINGGIECGHGTDPRVTDRIGFYKRYCDVFRIGYGSNLDC 126
G+G ING +EC V R+G+YK YC F + G+NL C
Sbjct: 265 GFGATIRAINGALECNGKNPGAVNARVGYYKDYCKQFGVDPGNNLTC 405
>gb|BG049497.1|BG049497 OV1_20_G04.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 561
Score = 136 bits (291), Expect(2) = 1e-040
Identities = 50/59 (84%), Positives = 54/59 (91%)
Frame = -2 / +1
Query: 533 QWPCAPGKKYFGRGPIQISFNYNYGPAGRAIGVDLLNNPDLVATDPVISFKTALWFWMN 357
QWPCAPGKKY+GRGP+QIS+NYNYGPAG+AIG D L NPD VA DPVISFKTALWFWMN
Sbjct: 61 QWPCAPGKKYYGRGPLQISWNYNYGPAGKAIGFDGLGNPDKVAQDPVISFKTALWFWMN 237
Score = 51.5 bits (106), Expect(2) = 1e-040
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = -2 / +1
Query: 266 GYGVITNIINGGIECGHGTDPRVTDRIGFYKRYCDVFRIGYGSNLDC 126
G+G ING +EC V R+G+YK YC F + G+NL C
Sbjct: 262 GFGATIRAINGALECNGKNPGAVNARVGYYKDYCKQFGVDPGNNLTC 402
>gb|CW448428.1|CW448428 fsbb001f182a11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f182a11, DNA
sequence
Length = 633
Score = 135 bits (290), Expect(2) = 5e-040
Identities = 49/59 (83%), Positives = 54/59 (91%)
Frame = -2 / -3
Query: 533 QWPCAPGKKYFGRGPIQISFNYNYGPAGRAIGVDLLNNPDLVATDPVISFKTALWFWMN 357
QWPCAPGKKY+GRGP+QIS+NYNYGPAGR IG D L NPD+VA DPVI+FKTALWFWMN
Sbjct: 583 QWPCAPGKKYYGRGPLQISWNYNYGPAGREIGFDGLGNPDMVAQDPVIAFKTALWFWMN 407
Score = 49.6 bits (102), Expect(2) = 5e-040
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = -2 / -3
Query: 266 GYGVITNIINGGIECGHGTDPRVTDRIGFYKRYCDVFRIGYGSNLDC 126
G+G I+G +EC ++ R+G+YK+YC F + G++L C
Sbjct: 382 GFGATIRAIDGALECNGNNPAQMNARVGYYKQYCQQFGVDPGNSLTC 242
>gb|CW275250.1|CW275250 104_748_11404861_148_35382_055 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11404861, DNA
sequence
Length = 627
Score = 135 bits (290), Expect(2) = 5e-040
Identities = 49/59 (83%), Positives = 54/59 (91%)
Frame = -2 / -1
Query: 533 QWPCAPGKKYFGRGPIQISFNYNYGPAGRAIGVDLLNNPDLVATDPVISFKTALWFWMN 357
QWPCAPGKKY+GRGP+QIS+NYNYGPAGR IG D L NPD+VA DPVI+FKTALWFWMN
Sbjct: 372 QWPCAPGKKYYGRGPLQISWNYNYGPAGREIGFDGLGNPDMVAQDPVIAFKTALWFWMN 196
Score = 49.6 bits (102), Expect(2) = 5e-040
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = -2 / -1
Query: 266 GYGVITNIINGGIECGHGTDPRVTDRIGFYKRYCDVFRIGYGSNLDC 126
G+G I+G +EC ++ R+G+YK+YC F + G++L C
Sbjct: 171 GFGATIRAIDGALECNGNNPAQMNARVGYYKQYCQQFGVDPGNSLTC 31
>gb|BG049053.1|BG049053 OV1_22_F09.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 528
Score = 133 bits (286), Expect(2) = 5e-040
Identities = 49/58 (84%), Positives = 53/58 (91%)
Frame = -2 / +2
Query: 530 WPCAPGKKYFGRGPIQISFNYNYGPAGRAIGVDLLNNPDLVATDPVISFKTALWFWMN 357
WPCAPGKKY+GRGP+QIS+NYNYGPAG+AIG D L NPD VA DPVISFKTALWFWMN
Sbjct: 2 WPCAPGKKYYGRGPLQISWNYNYGPAGKAIGFDGLGNPDKVAQDPVISFKTALWFWMN 175
Score = 51.5 bits (106), Expect(2) = 5e-040
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = -2 / +2
Query: 266 GYGVITNIINGGIECGHGTDPRVTDRIGFYKRYCDVFRIGYGSNLDC 126
G+G ING +EC V R+G+YK YC F + G+NL C
Sbjct: 200 GFGATIRAINGALECNGKNPGAVNARVGYYKDYCKQFGVDPGNNLTC 340
>gb|CW039394.1|CW039394 104_272_10505475_115_30390 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10505475, DNA
sequence
Length = 689
Score = 133 bits (286), Expect(2) = 9e-039
Identities = 48/63 (76%), Positives = 55/63 (87%)
Frame = -2 / -3
Query: 548 CEPRPQWPCAPGKKYFGRGPIQISFNYNYGPAGRAIGVDLLNNPDLVATDPVISFKTALW 369
C QWPCAPGKKY+GRGP+QIS+N+NYGPAG++IGVDLL NPD VA DPV+SFKTALW
Sbjct: 540 CALSSQWPCAPGKKYYGRGPLQISWNFNYGPAGQSIGVDLLENPDKVAQDPVVSFKTALW 361
Query: 368 FWM 360
WM
Sbjct: 360 LWM 352
Score = 47.3 bits (97), Expect(2) = 9e-039
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -2 / -3
Query: 266 GYGVITNIINGGIECGHGTDPRVTDRIGFYKRYCDVFRIGYGSNLDC 126
G+G +++G +EC + R+G+YK YC F + G+N+ C
Sbjct: 321 GFGATIRVLHGALECNGKNPAAMKARVGYYKDYCKQFGVDPGNNVTC 181
>gb|CW266083.1|CW266083 104_735_11232237_148_35267_085 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11232237, DNA
sequence
Length = 662
Score = 99.6 bits (211), Expect(4) = 4e-038
Identities = 33/60 (55%), Positives = 48/60 (80%)
Frame = -2 / +2
Query: 488 IQISFNYNYGPAGRAIGVDLLNNPDLVATDPVISFKTALWFWMNARDNKPSCHAVITGQW 309
+++ YNY AG+A+ ++L+ NPDLV++DPV++FKTA+WFWM + KPSCHAV+TG W
Sbjct: 221 LRVRSEYNYRQAGQALNLNLVGNPDLVSSDPVVAFKTAIWFWMTPQSPKPSCHAVMTGSW 400
Score = 49.6 bits (102), Expect(4) = 4e-038
Identities = 15/29 (51%), Positives = 22/29 (75%)
Frame = -2 / +2
Query: 194 DRIGFYKRYCDVFRIGYGSNLDCDGQRPF 108
DR+G+YKRY D+ R+ YG N+ C Q+P+
Sbjct: 515 DRVGYYKRYSDMLRVRYGDNIACKDQKPY 601
Score = 41.8 bits (85), Expect(4) = 4e-038
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = -2 / +2
Query: 266 GYGVITNIINGGIECGHG 213
GYGV TNIINGG+ECG G
Sbjct: 440 GYGVTTNIINGGMECGKG 493
Score = 24.0 bits (46), Expect(4) = 4e-038
Identities = 7/10 (70%), Positives = 10/10 (100%)
Frame = -2 / +2
Query: 506 YFGRGPIQIS 477
Y+GRGPIQ++
Sbjct: 86 YYGRGPIQLT 115
>gb|AW922776.1|AW922776 DG1_46_C01.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 737
Score = 122 bits (260), Expect(2) = 1e-037
Identities = 44/59 (74%), Positives = 51/59 (86%)
Frame = -2 / +1
Query: 533 QWPCAPGKKYFGRGPIQISFNYNYGPAGRAIGVDLLNNPDLVATDPVISFKTALWFWMN 357
QWPCA G+KY+GRGP+QIS+NYNYGPAG++IG D L NPD VA D VI+FK ALWFWMN
Sbjct: 190 QWPCAAGQKYYGRGPLQISWNYNYGPAGQSIGFDGLGNPDAVAQDAVIAFKAALWFWMN 366
Score = 55.6 bits (115), Expect(2) = 1e-037
Identities = 19/47 (40%), Positives = 27/47 (57%)
Frame = -2 / +1
Query: 266 GYGVITNIINGGIECGHGTDPRVTDRIGFYKRYCDVFRIGYGSNLDC 126
G+G ING +EC ++ R+G+YK+YC F + GSNL C
Sbjct: 391 GFGATIRAINGALECNGNNPAQMNARVGYYKQYCQQFGVDPGSNLTC 531
>gb|CX613448.1|CX613448 GABR1_8_E12.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_8_E12_A002 3', mRNA sequence
Length = 722
Score = 122 bits (260), Expect(2) = 1e-037
Identities = 44/59 (74%), Positives = 51/59 (86%)
Frame = -2 / +3
Query: 533 QWPCAPGKKYFGRGPIQISFNYNYGPAGRAIGVDLLNNPDLVATDPVISFKTALWFWMN 357
QWPCA G+KY+GRGP+QIS+NYNYGPAG++IG D L NPD VA D VI+FK ALWFWMN
Sbjct: 168 QWPCAAGQKYYGRGPLQISWNYNYGPAGQSIGFDGLGNPDAVAQDAVIAFKAALWFWMN 344
Score = 55.6 bits (115), Expect(2) = 1e-037
Identities = 19/47 (40%), Positives = 27/47 (57%)
Frame = -2 / +3
Query: 266 GYGVITNIINGGIECGHGTDPRVTDRIGFYKRYCDVFRIGYGSNLDC 126
G+G ING +EC ++ R+G+YK+YC F + GSNL C
Sbjct: 369 GFGATIRAINGALECNGNNPAQMNARVGYYKQYCQQFGVDPGSNLTC 509
>gb|CN151360.1|CN151360 WOUND1_75_B02.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_75_B02_A002 3', mRNA sequence
Length = 715
Score = 122 bits (260), Expect(2) = 1e-037
Identities = 44/59 (74%), Positives = 51/59 (86%)
Frame = -2 / +1
Query: 533 QWPCAPGKKYFGRGPIQISFNYNYGPAGRAIGVDLLNNPDLVATDPVISFKTALWFWMN 357
QWPCA G+KY+GRGP+QIS+NYNYGPAG++IG D L NPD VA D VI+FK ALWFWMN
Sbjct: 166 QWPCAAGQKYYGRGPLQISWNYNYGPAGQSIGFDGLGNPDAVAQDAVIAFKAALWFWMN 342
Score = 55.6 bits (115), Expect(2) = 1e-037
Identities = 19/47 (40%), Positives = 27/47 (57%)
Frame = -2 / +1
Query: 266 GYGVITNIINGGIECGHGTDPRVTDRIGFYKRYCDVFRIGYGSNLDC 126
G+G ING +EC ++ R+G+YK+YC F + GSNL C
Sbjct: 367 GFGATIRAINGALECNGNNPAQMNARVGYYKQYCQQFGVDPGSNLTC 507
>gb|CX610007.1|CX610007 ANR1_16_C10.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_16_C10_A002 3', mRNA sequence
Length = 714
Score = 122 bits (260), Expect(2) = 1e-037
Identities = 44/59 (74%), Positives = 51/59 (86%)
Frame = -2 / +3
Query: 533 QWPCAPGKKYFGRGPIQISFNYNYGPAGRAIGVDLLNNPDLVATDPVISFKTALWFWMN 357
QWPCA G+KY+GRGP+QIS+NYNYGPAG++IG D L NPD VA D VI+FK ALWFWMN
Sbjct: 318 QWPCAAGQKYYGRGPLQISWNYNYGPAGQSIGFDGLGNPDAVAQDAVIAFKAALWFWMN 494
Score = 55.6 bits (115), Expect(2) = 1e-037
Identities = 19/47 (40%), Positives = 27/47 (57%)
Frame = -2 / +3
Query: 266 GYGVITNIINGGIECGHGTDPRVTDRIGFYKRYCDVFRIGYGSNLDC 126
G+G ING +EC ++ R+G+YK+YC F + GSNL C
Sbjct: 519 GFGATIRAINGALECNGNNPAQMNARVGYYKQYCQQFGVDPGSNLTC 659
>gb|CW357974.1|CW357974 fsbb001f024n22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f024n22, DNA
sequence
Length = 686
Score = 122 bits (260), Expect(2) = 1e-037
Identities = 44/59 (74%), Positives = 51/59 (86%)
Frame = -2 / -1
Query: 533 QWPCAPGKKYFGRGPIQISFNYNYGPAGRAIGVDLLNNPDLVATDPVISFKTALWFWMN 357
QWPCA G+KY+GRGP+QIS+NYNYGPAG++IG D L NPD VA D VI+FK ALWFWMN
Sbjct: 677 QWPCAAGQKYYGRGPLQISWNYNYGPAGQSIGFDGLGNPDAVAQDAVIAFKAALWFWMN 501
Score = 55.6 bits (115), Expect(2) = 1e-037
Identities = 19/47 (40%), Positives = 27/47 (57%)
Frame = -2 / -1
Query: 266 GYGVITNIINGGIECGHGTDPRVTDRIGFYKRYCDVFRIGYGSNLDC 126
G+G ING +EC ++ R+G+YK+YC F + GSNL C
Sbjct: 476 GFGATIRAINGALECNGNNPAQMNARVGYYKQYCQQFGVDPGSNLTC 336
>gb|CL161206.1|CL161206 104_352_10805558_116_31827_230 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10805558, DNA
sequence
Length = 680
Score = 89.5 bits (189), Expect(2) = 1e-037
Identities = 32/58 (55%), Positives = 44/58 (75%)
Frame = -2 / +3
Query: 482 ISFNYNYGPAGRAIGVDLLNNPDLVATDPVISFKTALWFWMNARDNKPSCHAVITGQW 309
+S+N+NYGPAG+A+G D L NP++VA +F+TALWFWM R KPSCH V+ G++
Sbjct: 3 LSWNFNYGPAGQALGFDGLRNPEVVANCSETAFRTALWFWMTPRRPKPSCHEVMVGEY 176
Score = 88.1 bits (186), Expect(2) = 1e-037
Identities = 29/53 (54%), Positives = 41/53 (77%)
Frame = -2 / +3
Query: 266 GYGVITNIINGGIECGHGTDPRVTDRIGFYKRYCDVFRIGYGSNLDCDGQRPF 108
G+G++TNI+NGG+EC D RV +RIGFY+RYC +F + G+NLDC Q+P+
Sbjct: 216 GFGLVTNIVNGGLECNRTDDARVNNRIGFYQRYCQIFNVDAGANLDCAHQQPY 374
>gb|CD423411.1|CD423411 SA1_23_C09.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_23_C09_A002 3', mRNA sequence
Length = 651
Score = 122 bits (260), Expect(2) = 1e-037
Identities = 44/59 (74%), Positives = 51/59 (86%)
Frame = -2 / +1
Query: 533 QWPCAPGKKYFGRGPIQISFNYNYGPAGRAIGVDLLNNPDLVATDPVISFKTALWFWMN 357
QWPCA G+KY+GRGP+QIS+NYNYGPAG++IG D L NPD VA D VI+FK ALWFWMN
Sbjct: 85 QWPCAAGQKYYGRGPLQISWNYNYGPAGQSIGFDGLGNPDAVAQDAVIAFKAALWFWMN 261
Score = 55.6 bits (115), Expect(2) = 1e-037
Identities = 19/47 (40%), Positives = 27/47 (57%)
Frame = -2 / +1
Query: 266 GYGVITNIINGGIECGHGTDPRVTDRIGFYKRYCDVFRIGYGSNLDC 126
G+G ING +EC ++ R+G+YK+YC F + GSNL C
Sbjct: 286 GFGATIRAINGALECNGNNPAQMNARVGYYKQYCQQFGVDPGSNLTC 426
>gb|CW150339.1|CW150339 104_549_11142974_116_36302_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11142974, DNA
sequence
Length = 649
Score = 122 bits (260), Expect(2) = 1e-037
Identities = 44/59 (74%), Positives = 51/59 (86%)
Frame = -2 / -3
Query: 533 QWPCAPGKKYFGRGPIQISFNYNYGPAGRAIGVDLLNNPDLVATDPVISFKTALWFWMN 357
QWPCA G+KY+GRGP+QIS+NYNYGPAG++IG D L NPD VA D VI+FK ALWFWMN
Sbjct: 527 QWPCAAGQKYYGRGPLQISWNYNYGPAGQSIGFDGLGNPDAVAQDAVIAFKAALWFWMN 351
Score = 55.6 bits (115), Expect(2) = 1e-037
Identities = 19/47 (40%), Positives = 27/47 (57%)
Frame = -2 / -3
Query: 266 GYGVITNIINGGIECGHGTDPRVTDRIGFYKRYCDVFRIGYGSNLDC 126
G+G ING +EC ++ R+G+YK+YC F + GSNL C
Sbjct: 326 GFGATIRAINGALECNGNNPAQMNARVGYYKQYCQQFGVDPGSNLTC 186
>gb|CW318996.1|CW318996 104_811_11474252_116_35881_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11474252, DNA
sequence
Length = 584
Score = 122 bits (260), Expect(2) = 1e-037
Identities = 44/59 (74%), Positives = 51/59 (86%)
Frame = -2 / -3
Query: 533 QWPCAPGKKYFGRGPIQISFNYNYGPAGRAIGVDLLNNPDLVATDPVISFKTALWFWMN 357
QWPCA G+KY+GRGP+QIS+NYNYGPAG++IG D L NPD VA D VI+FK ALWFWMN
Sbjct: 564 QWPCAAGQKYYGRGPLQISWNYNYGPAGQSIGFDGLGNPDAVAQDAVIAFKAALWFWMN 388
Score = 55.6 bits (115), Expect(2) = 1e-037
Identities = 19/47 (40%), Positives = 27/47 (57%)
Frame = -2 / -3
Query: 266 GYGVITNIINGGIECGHGTDPRVTDRIGFYKRYCDVFRIGYGSNLDC 126
G+G ING +EC ++ R+G+YK+YC F + GSNL C
Sbjct: 363 GFGATIRAINGALECNGNNPAQMNARVGYYKQYCQQFGVDPGSNLTC 223
>gb|BE362915.2|BE362915 DG1_90_E12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 528
Score = 133 bits (286), Expect(2) = 1e-037
Identities = 48/63 (76%), Positives = 55/63 (87%)
Frame = -2 / +3
Query: 548 CEPRPQWPCAPGKKYFGRGPIQISFNYNYGPAGRAIGVDLLNNPDLVATDPVISFKTALW 369
C QWPCAPGKKY+GRGP+QIS+N+NYGPAG++IGVDLL NPD VA DPV+SFKTALW
Sbjct: 66 CALSSQWPCAPGKKYYGRGPLQISWNFNYGPAGQSIGVDLLENPDKVAQDPVVSFKTALW 245
Query: 368 FWM 360
WM
Sbjct: 246 LWM 254
Score = 43.7 bits (89), Expect(2) = 1e-037
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -2 / +3
Query: 266 GYGVITNIINGGIECGHGTDPRVTDRIGFYKRYCDVFRIGYGSNLDC 126
G+G +++G +EC + R+G+YK YC F + +N+ C
Sbjct: 285 GFGATIRVLHGALECNGKNPAAMKARVGYYKDYCKQFGVDPRNNVTC 425
>gb|BE359997.1|BE359997 DG1_60_H07.g2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 486
Score = 122 bits (260), Expect(2) = 1e-037
Identities = 44/59 (74%), Positives = 51/59 (86%)
Frame = -2 / +3
Query: 533 QWPCAPGKKYFGRGPIQISFNYNYGPAGRAIGVDLLNNPDLVATDPVISFKTALWFWMN 357
QWPCA G+KY+GRGP+QIS+NYNYGPAG++IG D L NPD VA D VI+FK ALWFWMN
Sbjct: 21 QWPCAAGQKYYGRGPLQISWNYNYGPAGQSIGFDGLGNPDAVAQDAVIAFKAALWFWMN 197
Score = 55.6 bits (115), Expect(2) = 1e-037
Identities = 19/47 (40%), Positives = 27/47 (57%)
Frame = -2 / +3
Query: 266 GYGVITNIINGGIECGHGTDPRVTDRIGFYKRYCDVFRIGYGSNLDC 126
G+G ING +EC ++ R+G+YK+YC F + GSNL C
Sbjct: 222 GFGATIRAINGALECNGNNPAQMNARVGYYKQYCQQFGVDPGSNLTC 362
>gb|AW924229.1|AW924229 WS1_51_H04.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 447
Score = 122 bits (260), Expect(2) = 1e-037
Identities = 44/59 (74%), Positives = 51/59 (86%)
Frame = -2 / +3
Query: 533 QWPCAPGKKYFGRGPIQISFNYNYGPAGRAIGVDLLNNPDLVATDPVISFKTALWFWMN 357
QWPCA G+KY+GRGP+QIS+NYNYGPAG++IG D L NPD VA D VI+FK ALWFWMN
Sbjct: 57 QWPCAAGQKYYGRGPLQISWNYNYGPAGQSIGFDGLGNPDAVAQDAVIAFKAALWFWMN 233
Score = 55.6 bits (115), Expect(2) = 1e-037
Identities = 19/47 (40%), Positives = 27/47 (57%)
Frame = -2 / +3
Query: 266 GYGVITNIINGGIECGHGTDPRVTDRIGFYKRYCDVFRIGYGSNLDC 126
G+G ING +EC ++ R+G+YK+YC F + GSNL C
Sbjct: 258 GFGATIRAINGALECNGNNPAQMNARVGYYKQYCQQFGVDPGSNLTC 398
>gb|CW110423.1|CW110423 104_483_11103696_148_34524_094 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11103696, DNA
sequence
Length = 517
Score = 133 bits (286), Expect(2) = 9e-036
Identities = 48/63 (76%), Positives = 55/63 (87%)
Frame = -2 / -2
Query: 548 CEPRPQWPCAPGKKYFGRGPIQISFNYNYGPAGRAIGVDLLNNPDLVATDPVISFKTALW 369
C QWPCAPGKKY+GRGP+QIS+N+NYGPAG++IGVDLL NPD VA DPV+SFKTALW
Sbjct: 321 CALSSQWPCAPGKKYYGRGPLQISWNFNYGPAGQSIGVDLLENPDKVAQDPVVSFKTALW 142
Query: 368 FWM 360
WM
Sbjct: 141 LWM 133
Score = 37.3 bits (75), Expect(2) = 9e-036
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -2 / -2
Query: 266 GYGVITNIINGGIECGHGTDPRVTDRIGFYKRYC 165
G+G +++G +EC + R+G+YK YC
Sbjct: 102 GFGATIRVLHGALECNGKNPAAMKARVGYYKDYC 1
>gb|AF402939.1|AF402939 Sorghum halepense chitinase-B gene, partial cds
Length = 922
Score = 121 bits (259), Expect(2) = 2e-035
Identities = 45/59 (76%), Positives = 50/59 (84%)
Frame = -2 / +2
Query: 533 QWPCAPGKKYFGRGPIQISFNYNYGPAGRAIGVDLLNNPDLVATDPVISFKTALWFWMN 357
QWPCA G+KY+GRGP+QIS+NYNYGPAGR IG D L NPD VA D VI+FKTALWFW N
Sbjct: 578 QWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFDGLRNPDRVAQDAVIAFKTALWFWTN 754
Score = 48.3 bits (99), Expect(2) = 2e-035
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -2 / +2
Query: 266 GYGVITNIINGGIECGHGTDPRVTDRIGFYKRYCDVFRIGYGSNLDC 126
G+G ING +EC ++ R+G+Y++YC + G NL C
Sbjct: 779 GFGATIRAINGALECNGKNTAQMNARVGYYRQYCQQLGVDPGPNLTC 919
>gb|CW365833.1|CW365833 fsbb001f038i18k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f038i18, DNA
sequence
Length = 831
Score = 121 bits (258), Expect(2) = 3e-035
Identities = 44/59 (74%), Positives = 50/59 (84%)
Frame = -2 / +3
Query: 533 QWPCAPGKKYFGRGPIQISFNYNYGPAGRAIGVDLLNNPDLVATDPVISFKTALWFWMN 357
QWPCA G+KY+GRGP+QIS+NYNYGPAGR IG D L NPD VA D V++FKTALWFW N
Sbjct: 156 QWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFDGLRNPDRVAQDAVVAFKTALWFWTN 332
Score = 48.3 bits (99), Expect(2) = 3e-035
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -2 / +3
Query: 266 GYGVITNIINGGIECGHGTDPRVTDRIGFYKRYCDVFRIGYGSNLDC 126
G+G ING +EC ++ R+G+Y++YC + G NL C
Sbjct: 357 GFGATIRAINGALECNGKNTAQMNARVGYYRQYCQQLGVDPGPNLTC 497
>gb|CN132942.1|CN132942 OX1_9_D11.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_9_D11_A002 3', mRNA sequence
Length = 812
Score = 121 bits (258), Expect(2) = 3e-035
Identities = 44/59 (74%), Positives = 50/59 (84%)
Frame = -2 / +3
Query: 533 QWPCAPGKKYFGRGPIQISFNYNYGPAGRAIGVDLLNNPDLVATDPVISFKTALWFWMN 357
QWPCA G+KY+GRGP+QIS+NYNYGPAGR IG D L NPD VA D V++FKTALWFW N
Sbjct: 279 QWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFDGLRNPDRVAQDAVVAFKTALWFWTN 455
Score = 48.3 bits (99), Expect(2) = 3e-035
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -2 / +3
Query: 266 GYGVITNIINGGIECGHGTDPRVTDRIGFYKRYCDVFRIGYGSNLDC 126
G+G ING +EC ++ R+G+Y++YC + G NL C
Sbjct: 480 GFGATIRAINGALECNGKNTAQMNARVGYYRQYCQQLGVDPGPNLTC 620
>gb|CL160722.1|CL160722 104_351_10805186_116_31825_242 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10805186, DNA
sequence
Length = 711
Score = 121 bits (258), Expect(2) = 3e-035
Identities = 44/59 (74%), Positives = 50/59 (84%)
Frame = -2 / +3
Query: 533 QWPCAPGKKYFGRGPIQISFNYNYGPAGRAIGVDLLNNPDLVATDPVISFKTALWFWMN 357
QWPCA G+KY+GRGP+QIS+NYNYGPAGR IG D L NPD VA D V++FKTALWFW N
Sbjct: 222 QWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFDGLRNPDRVAQDAVVAFKTALWFWTN 398
Score = 48.3 bits (99), Expect(2) = 3e-035
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -2 / +3
Query: 266 GYGVITNIINGGIECGHGTDPRVTDRIGFYKRYCDVFRIGYGSNLDC 126
G+G ING +EC ++ R+G+Y++YC + G NL C
Sbjct: 423 GFGATIRAINGALECNGKNTAQMNARVGYYRQYCQQLGVDPGPNLTC 563
>gb|BE918012.1|BE918012 OV1_8_G11.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 710
Score = 121 bits (258), Expect(2) = 3e-035
Identities = 44/59 (74%), Positives = 50/59 (84%)
Frame = -2 / +2
Query: 533 QWPCAPGKKYFGRGPIQISFNYNYGPAGRAIGVDLLNNPDLVATDPVISFKTALWFWMN 357
QWPCA G+KY+GRGP+QIS+NYNYGPAGR IG D L NPD VA D V++FKTALWFW N
Sbjct: 218 QWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFDGLRNPDRVAQDAVVAFKTALWFWTN 394
Score = 48.3 bits (99), Expect(2) = 3e-035
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -2 / +2
Query: 266 GYGVITNIINGGIECGHGTDPRVTDRIGFYKRYCDVFRIGYGSNLDC 126
G+G ING +EC ++ R+G+Y++YC + G NL C
Sbjct: 419 GFGATIRAINGALECNGKNTAQMNARVGYYRQYCQQLGVDPGPNLTC 559
>gb|CD223183.1|CD223183 CCC1_26_G01.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_26_G01_A007 5', mRNA sequence
Length = 662
Score = 121 bits (258), Expect(2) = 3e-035
Identities = 44/59 (74%), Positives = 50/59 (84%)
Frame = -2 / +1
Query: 533 QWPCAPGKKYFGRGPIQISFNYNYGPAGRAIGVDLLNNPDLVATDPVISFKTALWFWMN 357
QWPCA G+KY+GRGP+QIS+NYNYGPAGR IG D L NPD VA D V++FKTALWFW N
Sbjct: 229 QWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFDGLRNPDRVAQDAVVAFKTALWFWTN 405
Score = 48.3 bits (99), Expect(2) = 3e-035
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -2 / +1
Query: 266 GYGVITNIINGGIECGHGTDPRVTDRIGFYKRYCDVFRIGYGSNLDC 126
G+G ING +EC ++ R+G+Y++YC + G NL C
Sbjct: 430 GFGATIRAINGALECNGKNTAQMNARVGYYRQYCQQLGVDPGPNLTC 570
>gb|AW746018.1|AW746018 WS1_38_H11.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 615
Score = 121 bits (258), Expect(2) = 3e-035
Identities = 44/59 (74%), Positives = 50/59 (84%)
Frame = -2 / +2
Query: 533 QWPCAPGKKYFGRGPIQISFNYNYGPAGRAIGVDLLNNPDLVATDPVISFKTALWFWMN 357
QWPCA G+KY+GRGP+QIS+NYNYGPAGR IG D L NPD VA D V++FKTALWFW N
Sbjct: 86 QWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFDGLRNPDRVAQDAVVAFKTALWFWTN 262
Score = 48.3 bits (99), Expect(2) = 3e-035
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -2 / +2
Query: 266 GYGVITNIINGGIECGHGTDPRVTDRIGFYKRYCDVFRIGYGSNLDC 126
G+G ING +EC ++ R+G+Y++YC + G NL C
Sbjct: 287 GFGATIRAINGALECNGKNTAQMNARVGYYRQYCQQLGVDPGPNLTC 427
>gb|CD224094.1|CD224094 CCC1_32_C12.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_32_C12_A007 3', mRNA sequence
Length = 611
Score = 121 bits (258), Expect(2) = 3e-035
Identities = 44/59 (74%), Positives = 50/59 (84%)
Frame = -2 / +2
Query: 533 QWPCAPGKKYFGRGPIQISFNYNYGPAGRAIGVDLLNNPDLVATDPVISFKTALWFWMN 357
QWPCA G+KY+GRGP+QIS+NYNYGPAGR IG D L NPD VA D V++FKTALWFW N
Sbjct: 86 QWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFDGLRNPDRVAQDAVVAFKTALWFWTN 262
Score = 48.3 bits (99), Expect(2) = 3e-035
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -2 / +2
Query: 266 GYGVITNIINGGIECGHGTDPRVTDRIGFYKRYCDVFRIGYGSNLDC 126
G+G ING +EC ++ R+G+Y++YC + G NL C
Sbjct: 287 GFGATIRAINGALECNGKNTAQMNARVGYYRQYCQQLGVDPGPNLTC 427
>gb|CD226332.1|CD226332 CCC1_45_F08.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_45_F08_A007 3', mRNA sequence
Length = 611
Score = 121 bits (258), Expect(2) = 3e-035
Identities = 44/59 (74%), Positives = 50/59 (84%)
Frame = -2 / +2
Query: 533 QWPCAPGKKYFGRGPIQISFNYNYGPAGRAIGVDLLNNPDLVATDPVISFKTALWFWMN 357
QWPCA G+KY+GRGP+QIS+NYNYGPAGR IG D L NPD VA D V++FKTALWFW N
Sbjct: 86 QWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFDGLRNPDRVAQDAVVAFKTALWFWTN 262
Score = 48.3 bits (99), Expect(2) = 3e-035
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -2 / +2
Query: 266 GYGVITNIINGGIECGHGTDPRVTDRIGFYKRYCDVFRIGYGSNLDC 126
G+G ING +EC ++ R+G+Y++YC + G NL C
Sbjct: 287 GFGATIRAINGALECNGKNTAQMNARVGYYRQYCQQLGVDPGPNLTC 427
>gb|CD226807.1|CD226807 CCC1_48_C11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_48_C11_A007 3', mRNA sequence
Length = 598
Score = 121 bits (258), Expect(2) = 3e-035
Identities = 44/59 (74%), Positives = 50/59 (84%)
Frame = -2 / +1
Query: 533 QWPCAPGKKYFGRGPIQISFNYNYGPAGRAIGVDLLNNPDLVATDPVISFKTALWFWMN 357
QWPCA G+KY+GRGP+QIS+NYNYGPAGR IG D L NPD VA D V++FKTALWFW N
Sbjct: 49 QWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFDGLRNPDRVAQDAVVAFKTALWFWTN 225
Score = 48.3 bits (99), Expect(2) = 3e-035
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -2 / +1
Query: 266 GYGVITNIINGGIECGHGTDPRVTDRIGFYKRYCDVFRIGYGSNLDC 126
G+G ING +EC ++ R+G+Y++YC + G NL C
Sbjct: 250 GFGATIRAINGALECNGKNTAQMNARVGYYRQYCQQLGVDPGPNLTC 390
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 614,467,570
Number of Sequences: 832831
Number of extensions: 10216144
Number of successful extensions: 258383
Number of sequences better than 1.0e-020: 145
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 16271925768
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)