TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3067516.2.1
(605 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW103503.1|CW103503 104_472_11011923_148_34434_012 Sorgh... 371 e-102
gb|CW415985.1|CW415985 fsbb001f116f10k0 Sorghum methylation... 315 3e-085
gb|CW103502.1|CW103502 104_472_11011923_116_34430_012 Sorgh... 124 1e-027
gb|CL188415.1|CL188415 104_404_10901582_116_32447_049 Sorgh... 90 4e-027
gb|CW047922.1|CW047922 104_285_10512948_115_30217 Sorghum m... 75 7e-023
gb|CL196186.1|CL196186 104_422_10942890_114_32319_077 Sorgh... 107 2e-022
gb|CW030857.1|CW030857 104_259_10500467_114_30397 Sorghum m... 107 2e-022
gb|CW030858.1|CW030858 104_259_10500467_116_30398 Sorghum m... 107 2e-022
gb|CW081852.1|CW081852 104_422_10942890_114_32348_077 Sorgh... 107 2e-022
gb|CW093288.1|CW093288 104_456_10999686_116_33070_025 Sorgh... 107 2e-022
gb|CW187047.1|CW187047 104_605_11166886_148_36715_091 Sorgh... 107 2e-022
gb|CW225651.1|CW225651 104_663_11204469_148_37208_089 Sorgh... 107 2e-022
gb|CW363801.1|CW363801 fsbb001f035j03k0 Sorghum methylation... 107 2e-022
>gb|CW103503.1|CW103503 104_472_11011923_148_34434_012 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11011923, DNA
sequence
Length = 605
Score = 371 bits (804), Expect = e-102
Identities = 161/184 (87%), Positives = 167/184 (90%)
Frame = +3 / -3
Query: 9 CLPNFFQSILVEWLHTTAG*HRSSMMFMITITTGS*SMCNLYASEHLQRV*LTLLP*SHP 188
C+PNF ++ LVEWLHTT G*HRSSMMFMITIT GS* MCN+YASEHLQR LTLLP*SH
Sbjct: 552 CVPNFPKAFLVEWLHTTVG*HRSSMMFMITITIGS*PMCNVYASEHLQRASLTLLP*SHL 373
Query: 189 KDDQLMVQSCPLCSLFQEFLAASADEPLESPPLSLGFEKNGSHL*GPIACCPSSNRLYFQ 368
KD++LM Q CPLCSLFQEFLA SADEPLESPPLSLGFEKNGSH *GPI CPSSNRLYFQ
Sbjct: 372 KDEKLMFQLCPLCSLFQEFLADSADEPLESPPLSLGFEKNGSHS*GPIVRCPSSNRLYFQ 193
Query: 369 LFSSIKSLSSWPAMISLLNFVTLLMIASMETSNASFNVSSFDLGSAYITFGIRLMTSSLI 548
LFSSIKSLSSWPAMISLLNFVTLLMIAS ETSNASF VSSFDLGSAYITFGIRLMTSSLI
Sbjct: 192 LFSSIKSLSSWPAMISLLNFVTLLMIASTETSNASFKVSSFDLGSAYITFGIRLMTSSLI 13
Query: 549 CLTT 560
CL T
Sbjct: 12 CLIT 1
Score = 347 bits (753), Expect = 6e-095
Identities = 148/172 (86%), Positives = 151/172 (87%)
Frame = +2 / -2
Query: 8 LSSKFFPKHFGGMASYNCRVT*IINDVHDHHNYWILIYVQPICIRASSESIANSTPLISS 187
L SKF FGGMASYNCRVT*IINDVHDHHNYWIL YVQ ICIRASSESIANS PLISS
Sbjct: 553 LCSKFPQSIFGGMASYNCRVT*IINDVHDHHNYWILTYVQRICIRASSESIANSAPLISS 374
Query: 188 QRRPTHGSILSSLFTFPRILGSFCR*TTRISTFIFRLREEWIPFVRSNCLLSIV*QTILP 367
QRR TH S +SSLFTFPRILG F R*TTRISTFIF L EEWIPF+RSNC LSI *QTILP
Sbjct: 373 QRRETHVSTMSSLFTFPRILGRFSR*TTRISTFIFGL*EEWIPFMRSNCPLSIF*QTILP 194
Query: 368 AILFDKIFVFLACDDISSQLCHFVNDRLYGNIKCIFQCLQFRSWIGIYHLWY 523
AILFDKIF+FLACDDISSQLCHFVND LY NIKCIFQ LQFRSWI IYHLWY
Sbjct: 193 AILFDKIFIFLACDDISSQLCHFVNDCLYRNIKCIFQGLQFRSWISIYHLWY 38
Score = 341 bits (740), Expect = 4e-093
Identities = 148/184 (80%), Positives = 156/184 (84%)
Frame = -2 / +2
Query: 559 VVKQMREEVINLIPKVIYADPRSKLETLKDAFDVSIEAIINKVTKLRRDIIAGQEDKDFI 380
V+KQMREEVINLIPKVIYADPRSKLETLKDAFDVS+EAIINKVTKLRRDIIAGQEDKDFI
Sbjct: 2 VIKQMREEVINLIPKVIYADPRSKLETLKDAFDVSVEAIINKVTKLRRDIIAGQEDKDFI 181
Query: 379 EENSWKYSLLDDGQQAIGPHKWDPFFXXXXXXXXXXXXXSAEAAKNSWKSEQRGQD*TMS 200
EENSWKYSLL+DGQ+ IGPH+WDPFF SAE+AKNSWKSEQRG * MS
Sbjct: 182 EENSWKYSLLEDGQRTIGPHEWDPFFSKPKDKGGDSSGSSAESAKNSWKSEQRGHS*NMS 361
Query: 199 WSSLG*DQGSRVSYTL*RCSDAYRLHIDQDPVVMVIMNIIDDLCHPAVV*SHSTKMLWKK 20
+SSL *DQGSRVS L*RCSDAY LHI QDP+VMVIMNIIDDLCHP VV*SHSTK K
Sbjct: 362 FSSLR*DQGSRVSDAL*RCSDAYTLHIGQDPIVMVIMNIIDDLCHPTVV*SHSTKNALGK 541
Query: 19 FGRQ 8
FG Q
Sbjct: 542 FGTQ 553
Score = 323 bits (700), Expect = 1e-087
Identities = 155/181 (85%), Positives = 161/181 (88%)
Frame = -3 / +3
Query: 555 SSK*ERRSSI*YQR*YMPIQDRNWRH*KMHLMFP*RRSLTK*QS*EEISSQAKKTKILSK 376
SSK*ERRSSI*YQR*YM IQDRNWR *KMHLMF *R+SLTK*QS*EEISSQAKK KILSK
Sbjct: 6 SSK*ERRSSI*YQR*YMLIQDRNWRP*KMHLMFL*RQSLTK*QS*EEISSQAKKIKILSK 185
Query: 375 RIAGSIVC*TMDSRQLDLTNGIHSSRSLKIKVEILVVHLQKLPRILGKVNREDRIEP*VG 196
RIAGSIVC* MDS QLDL NGIHSS+S KIKVEILVVHL LPRILGKVN+ED +E *V
Sbjct: 186 RIAGSIVC*KMDSGQLDLMNGIHSSQSPKIKVEILVVHLLNLPRILGKVNKEDIVET*VS 365
Query: 195 RLWDEIKGVELAILSEDALMHIGCT*IKIQ*LW*S*TSLMIYVTLQLYEAIPPKCFGKNL 16
RL DEIKG ELA+LSEDALMHI CT*+KIQ*LW*S*TSLMIYVTLQLYEAIPPK NL
Sbjct: 366 RL*DEIKGAELAMLSEDALMHIRCT*VKIQ*LW*S*TSLMIYVTLQLYEAIPPKMLWGNL 545
Query: 15 E 13
E
Sbjct: 546 E 548
Score = 146 bits (313), Expect(3) = 9e-065
Identities = 65/85 (76%), Positives = 69/85 (81%)
Frame = -1 / +1
Query: 263 ICRSCQEFLEK*TERTGLNHELVVFGMRSRE*S*LYSLKML*CI*VAHRSRSSSYGDHEH 84
IC CQEFLEK*T+RT L HE +VF MRSRE S* SLKML*CI VAHRSRS+SYGDHEH
Sbjct: 298 IC*ICQEFLEK*TKRT*LKHEFLVFEMRSREQS*RCSLKML*CIYVAHRSRSNSYGDHEH 477
Query: 83 H**SMSPCSCMKPFHQNALEKIWKT 9
H**SMSP SCMKPFHQ +IW T
Sbjct: 478 H**SMSPYSCMKPFHQKCFGEIWNT 552
Score = 138 bits (297), Expect(3) = 1e-054
Identities = 61/80 (76%), Positives = 62/80 (77%)
Frame = +1 / -1
Query: 10 VFQIFSKAFWWNGFIQLQGDIDHQ*CS*SPXXXXXXXCATYMHQSIFREYS*LYSLDLIP 189
VFQI K FWWNGFIQL GDIDHQ*CS*SP CATYMHQSIFRE+ *L SLDLI
Sbjct: 551 VFQISPKHFWWNGFIQL*GDIDHQ*CS*SP*LLDLDLCATYMHQSIFREHR*LCSLDLIS 372
Query: 190 KTTNSWFNPVLSVHFSKNSW 249
KT NS FN VL VHFSKNSW
Sbjct: 371 KTRNSCFNYVLFVHFSKNSW 312
Score = 104 bits (222), Expect(3) = 9e-065
Identities = 42/48 (87%), Positives = 45/48 (93%)
Frame = -1 / +1
Query: 560 CGQANERGGHQSDTKGDICRSKIETGDIERCI*CFHRGDH*QSDKVEK 417
C QANERGGHQS+TKGDIC SKIETGD+ERCI*CF RG+H*QSDKVEK
Sbjct: 1 CDQANERGGHQSNTKGDIC*SKIETGDLERCI*CFCRGNH*QSDKVEK 144
Score = 62.0 bits (129), Expect(3) = 1e-054
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +1 / -1
Query: 418 FSTLSLC**SPLWKHQMHLSMSPVSILDRHI 510
FSTLSLC** PL KHQMHLS SPVSILD+HI
Sbjct: 143 FSTLSLC**LPLQKHQMHLSRSPVSILDQHI 51
Score = 52.4 bits (108), Expect(3) = 1e-054
Identities = 23/27 (85%), Positives = 23/27 (85%)
Frame = +1 / -1
Query: 295 ASRRMDPICEVQLPAVHRLTDYTSSYS 375
A RRMDPI EVQL AVH LTDYTSSYS
Sbjct: 266 ALRRMDPIHEVQLSAVHLLTDYTSSYS 186
Score = 36.3 bits (73), Expect(3) = 9e-065
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = -1 / +1
Query: 344 WTAGNWTSQMGSILLEA 294
WTA NWTS MGSILL+A
Sbjct: 217 WTADNWTS*MGSILLKA 267
>gb|CW415985.1|CW415985 fsbb001f116f10k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f116f10, DNA
sequence
Length = 584
Score = 315 bits (683), Expect = 3e-085
Identities = 141/155 (90%), Positives = 143/155 (92%)
Frame = +3 / -1
Query: 138 SEHLQRV*LTLLP*SHPKDDQLMVQSCPLCSLFQEFLAASADEPLESPPLSLGFEKNGSH 317
SEHLQR LTLLP*SH KD++LM Q CPLCSLFQEFLA SADEPLESPPLSLGFEKNGSH
Sbjct: 584 SEHLQRASLTLLP*SHLKDEKLMFQLCPLCSLFQEFLADSADEPLESPPLSLGFEKNGSH 405
Query: 318 L*GPIACCPSSNRLYFQLFSSIKSLSSWPAMISLLNFVTLLMIASMETSNASFNVSSFDL 497
*GPI CPSSNRLYFQLFSSIKSLSSWPAMISLLNFVTLLMIAS ETSNASF VSSFDL
Sbjct: 404 S*GPIVRCPSSNRLYFQLFSSIKSLSSWPAMISLLNFVTLLMIASTETSNASFKVSSFDL 225
Query: 498 GSAYITFGIRLMTSSLICLTTSG*ILFSLSSMLAF 602
GSAYITFGIRLMTSSLICL TSG*ILFSLSSMLAF
Sbjct: 224 GSAYITFGIRLMTSSLICLITSG*ILFSLSSMLAF 120
Score = 293 bits (634), Expect = 2e-078
Identities = 127/154 (82%), Positives = 134/154 (87%)
Frame = -2 / +1
Query: 601 NASIEERLKSIHPDVVKQMREEVINLIPKVIYADPRSKLETLKDAFDVSIEAIINKVTKL 422
NASIEERLKSIHPDV+KQMREEVINLIPKVIYADPRSKLETLKDAFDVS+EAIINKVTKL
Sbjct: 121 NASIEERLKSIHPDVIKQMREEVINLIPKVIYADPRSKLETLKDAFDVSVEAIINKVTKL 300
Query: 421 RRDIIAGQEDKDFIEENSWKYSLLDDGQQAIGPHKWDPFFXXXXXXXXXXXXXSAEAAKN 242
RRDIIAGQEDKDFIEENSWKYSLL+DGQ+ IGPH+WDPFF SAE+AKN
Sbjct: 301 RRDIIAGQEDKDFIEENSWKYSLLEDGQRTIGPHEWDPFFSKPKDKGGDSSGSSAESAKN 480
Query: 241 SWKSEQRGQD*TMSWSSLG*DQGSRVSYTL*RCS 140
SWKSEQRG * MS+SSL *DQGSRVS L*RCS
Sbjct: 481 SWKSEQRGHS*NMSFSSLR*DQGSRVSDAL*RCS 582
Score = 285 bits (616), Expect = 5e-076
Identities = 126/155 (81%), Positives = 129/155 (83%)
Frame = +2 / -3
Query: 140 RASSESIANSTPLISSQRRPTHGSILSSLFTFPRILGSFCR*TTRISTFIFRLREEWIPF 319
RASSESIANS PLISSQRR TH S +SSLFTFPRILG F R*TTRISTFIF L EEWIPF
Sbjct: 582 RASSESIANSAPLISSQRRETHVSTMSSLFTFPRILGRFSR*TTRISTFIFGL*EEWIPF 403
Query: 320 VRSNCLLSIV*QTILPAILFDKIFVFLACDDISSQLCHFVNDRLYGNIKCIFQCLQFRSW 499
+RSNC LSI *QTILPAILFDKIF+FLACDDISSQLCHFVND LY NIKCIFQ LQFRSW
Sbjct: 402 MRSNCPLSIF*QTILPAILFDKIFIFLACDDISSQLCHFVNDCLYRNIKCIFQGLQFRSW 223
Query: 500 IGIYHLWYQIXXXXXXXXXXIWVNTL*PLLNAGIS 604
I IYHLWY I IWVNTL* LLNAGIS
Sbjct: 222 ISIYHLWY*IDDLLSHLLDHIWVNTL*SLLNAGIS 118
Score = 274 bits (592), Expect = 1e-072
Identities = 133/155 (85%), Positives = 138/155 (89%)
Frame = -3 / +2
Query: 603 EMPALRRG*RVFTQMWSSK*ERRSSI*YQR*YMPIQDRNWRH*KMHLMFP*RRSLTK*QS 424
EMPALRR *RVFTQM SSK*ERRSSI*YQR*YM IQDRNWR *KMHLMF *R+SLTK*QS
Sbjct: 119 EMPALRRD*RVFTQM*SSK*ERRSSI*YQR*YMLIQDRNWRP*KMHLMFL*RQSLTK*QS 298
Query: 423 *EEISSQAKKTKILSKRIAGSIVC*TMDSRQLDLTNGIHSSRSLKIKVEILVVHLQKLPR 244
*EEISSQAKK KILSKRIAGSIVC* MDS QLDL NGIHSS+S KIKVEILVVHL LPR
Sbjct: 299 *EEISSQAKKIKILSKRIAGSIVC*KMDSGQLDLMNGIHSSQSPKIKVEILVVHLLNLPR 478
Query: 243 ILGKVNREDRIEP*VGRLWDEIKGVELAILSEDAL 139
ILGKVN+ED +E *V RL DEIKG ELA+LSEDAL
Sbjct: 479 ILGKVNKEDIVET*VSRL*DEIKGAELAMLSEDAL 583
Score = 137 bits (294), Expect(3) = 2e-049
Identities = 55/62 (88%), Positives = 58/62 (93%)
Frame = -1 / +3
Query: 602 KCQH*GEAKEYSPRCGQANERGGHQSDTKGDICRSKIETGDIERCI*CFHRGDH*QSDKV 423
KCQH*GE KEYSPRC QANERGGHQS+TKGDIC SKIETGD+ERCI*CF RG+H*QSDKV
Sbjct: 120 KCQH*GETKEYSPRCDQANERGGHQSNTKGDIC*SKIETGDLERCI*CFCRGNH*QSDKV 299
Query: 422 EK 417
EK
Sbjct: 300 EK 305
Score = 64.3 bits (134), Expect(4) = 2e-041
Identities = 29/37 (78%), Positives = 30/37 (81%)
Frame = +1 / -2
Query: 139 QSIFREYS*LYSLDLIPKTTNSWFNPVLSVHFSKNSW 249
QSIFRE+ *L SLDLI KT NS FN VL VHFSKNSW
Sbjct: 583 QSIFREHR*LCSLDLISKTRNSCFNYVLFVHFSKNSW 473
Score = 62.0 bits (129), Expect(3) = 2e-049
Identities = 31/42 (73%), Positives = 33/42 (78%)
Frame = -1 / +3
Query: 263 ICRSCQEFLEK*TERTGLNHELVVFGMRSRE*S*LYSLKML* 138
IC CQEFLEK*T+RT L HE +VF MRSRE S* SLKML*
Sbjct: 459 IC*ICQEFLEK*TKRT*LKHEFLVFEMRSREQS*RCSLKML* 584
Score = 62.0 bits (129), Expect(4) = 2e-041
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +1 / -2
Query: 418 FSTLSLC**SPLWKHQMHLSMSPVSILDRHI 510
FSTLSLC** PL KHQMHLS SPVSILD+HI
Sbjct: 304 FSTLSLC**LPLQKHQMHLSRSPVSILDQHI 212
Score = 52.4 bits (108), Expect(4) = 2e-041
Identities = 23/27 (85%), Positives = 23/27 (85%)
Frame = +1 / -2
Query: 295 ASRRMDPICEVQLPAVHRLTDYTSSYS 375
A RRMDPI EVQL AVH LTDYTSSYS
Sbjct: 427 ALRRMDPIHEVQLSAVHLLTDYTSSYS 347
Score = 47.8 bits (98), Expect(4) = 2e-041
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = +1 / -2
Query: 547 FA*PHLGEYSLASPQCWHF 603
FA* HLGEYSL SPQCWHF
Sbjct: 175 FA*SHLGEYSLVSPQCWHF 119
Score = 36.3 bits (73), Expect(3) = 2e-049
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = -1 / +3
Query: 344 WTAGNWTSQMGSILLEA 294
WTA NWTS MGSILL+A
Sbjct: 378 WTADNWTS*MGSILLKA 428
>gb|CW103502.1|CW103502 104_472_11011923_116_34430_012 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11011923, DNA
sequence
Length = 687
Score = 124 bits (266), Expect = 1e-027
Identities = 53/61 (86%), Positives = 53/61 (86%)
Frame = +2 / +1
Query: 8 LSSKFFPKHFGGMASYNCRVT*IINDVHDHHNYWILIYVQPICIRASSESIANSTPLISS 187
L SKF FGGMASYNCRVT*IINDVHDHHNYWIL YVQ ICIRASSESIANS PLISS
Sbjct: 505 LCSKFPQSIFGGMASYNCRVT*IINDVHDHHNYWILTYVQRICIRASSESIANSAPLISS 684
Query: 188 Q 190
Q
Sbjct: 685 Q 687
Score = 115 bits (245), Expect = 8e-025
Identities = 48/59 (81%), Positives = 52/59 (88%)
Frame = +3 / +2
Query: 9 CLPNFFQSILVEWLHTTAG*HRSSMMFMITITTGS*SMCNLYASEHLQRV*LTLLP*SH 185
C+PNF ++ LVEWLHTT G*HRSSMMFMITIT GS* MCN+YASEHLQR LTLLP*SH
Sbjct: 506 CVPNFPKAFLVEWLHTTVG*HRSSMMFMITITIGS*PMCNVYASEHLQRASLTLLP*SH 682
Score = 111 bits (236), Expect = 1e-023
Identities = 50/58 (86%), Positives = 52/58 (89%)
Frame = -3 / -2
Query: 186 DEIKGVELAILSEDALMHIGCT*IKIQ*LW*S*TSLMIYVTLQLYEAIPPKCFGKNLE 13
DEIKG ELA+LSEDALMHI CT*+KIQ*LW*S*TSLMIYVTLQLYEAIPPK NLE
Sbjct: 683 DEIKGAELAMLSEDALMHIRCT*VKIQ*LW*S*TSLMIYVTLQLYEAIPPKMLWGNLE 510
Score = 110 bits (234), Expect = 3e-023
Identities = 49/61 (80%), Positives = 50/61 (81%)
Frame = -2 / -1
Query: 190 LG*DQGSRVSYTL*RCSDAYRLHIDQDPVVMVIMNIIDDLCHPAVV*SHSTKMLWKKFGR 11
L *DQGSRVS L*RCSDAY LHI QDP+VMVIMNIIDDLCHP VV*SHSTK KFG
Sbjct: 687 LR*DQGSRVSDAL*RCSDAYTLHIGQDPIVMVIMNIIDDLCHPTVV*SHSTKNALGKFGT 508
Query: 10 Q 8
Q
Sbjct: 507 Q 505
Score = 107 bits (228), Expect = 2e-022
Identities = 47/59 (79%), Positives = 49/59 (83%)
Frame = -1 / -3
Query: 185 MRSRE*S*LYSLKML*CI*VAHRSRSSSYGDHEHH**SMSPCSCMKPFHQNALEKIWKT 9
MRSRE S* SLKML*CI VAHRSRS+SYGDHEHH**SMSP SCMKPFHQ +IW T
Sbjct: 682 MRSREQS*RCSLKML*CIYVAHRSRSNSYGDHEHH**SMSPYSCMKPFHQKCFGEIWNT 506
Score = 102 bits (218), Expect = 4e-021
Identities = 45/59 (76%), Positives = 46/59 (77%)
Frame = +1 / +3
Query: 10 VFQIFSKAFWWNGFIQLQGDIDHQ*CS*SPXXXXXXXCATYMHQSIFREYS*LYSLDLI 186
VFQI K FWWNGFIQL GDIDHQ*CS*SP CATYMHQSIFRE+ *L SLDLI
Sbjct: 507 VFQISPKHFWWNGFIQL*GDIDHQ*CS*SP*LLDLDLCATYMHQSIFREHR*LCSLDLI 683
>gb|CL188415.1|CL188415 104_404_10901582_116_32447_049 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10901582, DNA
sequence
Length = 785
Score = 89.5 bits (189), Expect(2) = 4e-027
Identities = 33/60 (55%), Positives = 47/60 (78%)
Frame = -2 / +2
Query: 481 TLKDAFDVSIEAIINKVTKLRRDIIAGQEDKDFIEENSWKYSLLDDGQQAIGPHKWDPFF 302
T+KDAFD+++ A+INKVTKLRR I+ G+ +++ +E SWKY LL +GQ+A H+WDP F
Sbjct: 329 TVKDAFDIAVAAVINKVTKLRRGIVEGRAEEEKMERYSWKYPLLAEGQKAEDHHEWDPLF 508
Score = 52.8 bits (109), Expect(2) = 4e-027
Identities = 21/41 (51%), Positives = 28/41 (68%)
Frame = -2 / +2
Query: 601 NASIEERLKSIHPDVVKQMREEVINLIPKVIYADPRSKLET 479
N S+EE+L+ I P+ V MR+ V+ LIP V Y D S+LET
Sbjct: 206 NESVEEKLRKIPPETVGAMRDAVVGLIPSVTYGDATSRLET 328
>gb|CW047922.1|CW047922 104_285_10512948_115_30217 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10512948, DNA
sequence
Length = 525
Score = 75.3 bits (158), Expect(2) = 7e-023
Identities = 29/54 (53%), Positives = 42/54 (77%)
Frame = -2 / -1
Query: 481 TLKDAFDVSIEAIINKVTKLRRDIIAGQEDKDFIEENSWKYSLLDDGQQAIGPH 320
T+KDAFD+++ A+INKVTKLRR I+ G+ +++ +E SWKY LL +GQ+A H
Sbjct: 162 TVKDAFDIAVAAVINKVTKLRRGIVEGRAEEEKMERYSWKYPLLAEGQKAEDHH 1
Score = 52.8 bits (109), Expect(2) = 7e-023
Identities = 21/41 (51%), Positives = 28/41 (68%)
Frame = -2 / -1
Query: 601 NASIEERLKSIHPDVVKQMREEVINLIPKVIYADPRSKLET 479
N S+EE+L+ I P+ V MR+ V+ LIP V Y D S+LET
Sbjct: 285 NESVEEKLRKIPPETVGAMRDAVVGLIPSVTYGDATSRLET 163
>gb|CL196186.1|CL196186 104_422_10942890_114_32319_077 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10942890, DNA
sequence
Length = 634
Score = 107 bits (228), Expect = 2e-022
Identities = 44/69 (63%), Positives = 55/69 (79%)
Frame = -2 / -3
Query: 604 GNASIEERLKSIHPDVVKQMREEVINLIPKVIYADPRSKLETLKDAFDVSIEAIINKVTK 425
GN SIEE L+ I PDV +QM E VI LIP+++YADPRSKLETLKDA DV++EA+I +V K
Sbjct: 377 GNVSIEETLRRIPPDVAEQMTETVIGLIPRLVYADPRSKLETLKDAVDVTVEAVIGRVNK 198
Query: 424 LRRDIIAGQ 398
LR ++ GQ
Sbjct: 197 LREEMARGQ 171
>gb|CW030857.1|CW030857 104_259_10500467_114_30397 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10500467, DNA
sequence
Length = 734
Score = 107 bits (228), Expect = 2e-022
Identities = 44/69 (63%), Positives = 55/69 (79%)
Frame = -2 / +1
Query: 604 GNASIEERLKSIHPDVVKQMREEVINLIPKVIYADPRSKLETLKDAFDVSIEAIINKVTK 425
GN SIEE L+ I PDV +QM E VI LIP+++YADPRSKLETLKDA DV++EA+I +V K
Sbjct: 385 GNVSIEETLRRIPPDVAEQMTETVIGLIPRLVYADPRSKLETLKDAVDVTVEAVIGRVNK 564
Query: 424 LRRDIIAGQ 398
LR ++ GQ
Sbjct: 565 LREEMARGQ 591
>gb|CW030858.1|CW030858 104_259_10500467_116_30398 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10500467, DNA
sequence
Length = 785
Score = 107 bits (228), Expect = 2e-022
Identities = 44/69 (63%), Positives = 55/69 (79%)
Frame = -2 / -2
Query: 604 GNASIEERLKSIHPDVVKQMREEVINLIPKVIYADPRSKLETLKDAFDVSIEAIINKVTK 425
GN SIEE L+ I PDV +QM E VI LIP+++YADPRSKLETLKDA DV++EA+I +V K
Sbjct: 766 GNVSIEETLRRIPPDVAEQMTETVIGLIPRLVYADPRSKLETLKDAVDVTVEAVIGRVNK 587
Query: 424 LRRDIIAGQ 398
LR ++ GQ
Sbjct: 586 LREEMARGQ 560
>gb|CW081852.1|CW081852 104_422_10942890_114_32348_077 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10942890, DNA
sequence
Length = 564
Score = 107 bits (228), Expect = 2e-022
Identities = 44/69 (63%), Positives = 55/69 (79%)
Frame = -2 / -3
Query: 604 GNASIEERLKSIHPDVVKQMREEVINLIPKVIYADPRSKLETLKDAFDVSIEAIINKVTK 425
GN SIEE L+ I PDV +QM E VI LIP+++YADPRSKLETLKDA DV++EA+I +V K
Sbjct: 376 GNVSIEETLRRIPPDVAEQMTETVIGLIPRLVYADPRSKLETLKDAVDVTVEAVIGRVNK 197
Query: 424 LRRDIIAGQ 398
LR ++ GQ
Sbjct: 196 LREEMARGQ 170
>gb|CW093288.1|CW093288 104_456_10999686_116_33070_025 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10999686, DNA
sequence
Length = 443
Score = 107 bits (228), Expect = 2e-022
Identities = 44/69 (63%), Positives = 55/69 (79%)
Frame = -2 / +2
Query: 604 GNASIEERLKSIHPDVVKQMREEVINLIPKVIYADPRSKLETLKDAFDVSIEAIINKVTK 425
GN SIEE L+ I PDV +QM E VI LIP+++YADPRSKLETLKDA DV++EA+I +V K
Sbjct: 74 GNVSIEETLRRITPDVAEQMTETVIGLIPRLVYADPRSKLETLKDAVDVTVEAVIGRVNK 253
Query: 424 LRRDIIAGQ 398
LR ++ GQ
Sbjct: 254 LREEMARGQ 280
>gb|CW187047.1|CW187047 104_605_11166886_148_36715_091 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11166886, DNA
sequence
Length = 691
Score = 107 bits (228), Expect = 2e-022
Identities = 44/69 (63%), Positives = 55/69 (79%)
Frame = -2 / +2
Query: 604 GNASIEERLKSIHPDVVKQMREEVINLIPKVIYADPRSKLETLKDAFDVSIEAIINKVTK 425
GN SIEE L+ I PDV +QM E VI LIP+++YADPRSKLETLKDA DV++EA+I +V K
Sbjct: 320 GNVSIEETLRRIPPDVAEQMTETVIGLIPRLVYADPRSKLETLKDAVDVTVEAVIGRVNK 499
Query: 424 LRRDIIAGQ 398
LR ++ GQ
Sbjct: 500 LREEMARGQ 526
>gb|CW225651.1|CW225651 104_663_11204469_148_37208_089 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11204469, DNA
sequence
Length = 713
Score = 107 bits (228), Expect = 2e-022
Identities = 44/69 (63%), Positives = 55/69 (79%)
Frame = -2 / +1
Query: 604 GNASIEERLKSIHPDVVKQMREEVINLIPKVIYADPRSKLETLKDAFDVSIEAIINKVTK 425
GN SIEE L+ I PDV +QM E VI LIP+++YADPRSKLETLKDA DV++EA+I +V K
Sbjct: 220 GNVSIEETLRRIPPDVAEQMTETVIGLIPRLVYADPRSKLETLKDAVDVTVEAVIGRVNK 399
Query: 424 LRRDIIAGQ 398
LR ++ GQ
Sbjct: 400 LREEMARGQ 426
>gb|CW363801.1|CW363801 fsbb001f035j03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f035j03, DNA
sequence
Length = 498
Score = 107 bits (228), Expect = 2e-022
Identities = 44/69 (63%), Positives = 55/69 (79%)
Frame = -2 / -1
Query: 604 GNASIEERLKSIHPDVVKQMREEVINLIPKVIYADPRSKLETLKDAFDVSIEAIINKVTK 425
GN SIEE L+ I PDV +QM E VI LIP+++YADPRSKLETLKDA DV++EA+I +V K
Sbjct: 252 GNVSIEETLRRIPPDVAEQMTETVIGLIPRLVYADPRSKLETLKDAVDVTVEAVIGRVNK 73
Query: 424 LRRDIIAGQ 398
LR ++ GQ
Sbjct: 72 LREEMARGQ 46
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 676,601,231
Number of Sequences: 832831
Number of extensions: 8289360
Number of successful extensions: 59531
Number of sequences better than 1.0e-020: 13
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 17707683924
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)