TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3067267.2.1
(893 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD428774.1|CD428774 ETH1_36_F11.b1_A002 Ethylene-treated... 405 e-127
gb|BE357360.1|BE357360 DG1_148_A09.g1_A002 Dark Grown 1 (DG... 238 3e-079
gb|BF481293.1|BF481293 FM1_18_B07.g1_A003 Floral-Induced Me... 252 2e-078
gb|CW438479.1|CW438479 fsbb001f156c01f0 Sorghum methylation... 127 5e-078
gb|AW680176.1|AW680176 WS1_4_A08.g1_A002 Water-stressed 1 (... 205 3e-069
gb|CN146048.1|CN146048 WOUND1_37_D01.b1_A002 Wounded leaves... 201 3e-068
gb|BE357305.1|BE357305 DG1_148_A08.g1_A002 Dark Grown 1 (DG... 189 2e-064
gb|CN146103.1|CN146103 WOUND1_37_D01.g1_A002 Wounded leaves... 227 2e-058
gb|BG933489.1|BG933489 WS1_4_A08.b1_A002 Water-stressed 1 (... 215 8e-055
gb|BM322407.1|BM322407 PIC1_4_D11.b1_A002 Pathogen-infected... 118 9e-049
gb|BF481081.1|BF481081 FM1_16_B09.b1_A003 Floral-Induced Me... 152 2e-048
gb|BG054290.1|BG054290 OV2_4_F12.g1_A002 Ovary 2 (OV2) Sorg... 135 9e-046
gb|BG356706.1|BG356706 OV2_26_H07.g1_A002 Ovary 2 (OV2) Sor... 125 1e-039
gb|BM322502.1|BM322502 PIC1_5_F04.b1_A002 Pathogen-infected... 118 2e-037
gb|CW394606.1|CW394606 fsbb001f082e13k0 Sorghum methylation... 120 7e-037
gb|CW248041.1|CW248041 104_709_11222083_116_35029_076 Sorgh... 120 7e-037
gb|CW248042.1|CW248042 104_709_11222083_148_35025_076 Sorgh... 120 7e-037
gb|CW278451.1|CW278451 104_752_11406555_116_35679_002 Sorgh... 120 3e-036
gb|BE600718.1|BE600718 PI1_91_G08.b1_A002 Pathogen induced ... 89 5e-036
gb|BG463900.1|BG463900 EM1_52_C04.b1_A002 Embryo 1 (EM1) So... 122 2e-035
gb|CD462545.1|CD462545 ETH1_38_D03.b1_A002 Ethylene-treated... 125 3e-035
gb|BE359571.1|BE359571 DG1_54_C03.g2_A002 Dark Grown 1 (DG1... 106 2e-034
gb|BG556902.1|BG556902 EM1_40_B02.b1_A002 Embryo 1 (EM1) So... 122 7e-034
gb|CW101698.1|CW101698 104_469_11004795_148_34410_006 Sorgh... 140 2e-032
gb|BE596532.1|BE596532 PI1_57_D04.b1_A002 Pathogen induced ... 123 2e-031
gb|BZ412880.1|BZ412880 154b9_14 Subclones from BAC clones m... 122 1e-029
gb|BE594288.1|BE594288 WS1_104_E08.b1_A002 Water-stressed 1... 122 1e-029
gb|CF759927.1|CF759927 DSAF1_53_B04.b1_A011 Drought-stresse... 61 2e-029
gb|BG649620.1|BG649620 RHIZ2_81_D06.b1_A003 Rhizome2 (RHIZ2... 61 6e-029
gb|CW310508.1|CW310508 104_799_11469751_116_37434_020 Sorgh... 102 6e-029
gb|CW081302.1|CW081302 104_418_10941386_114_32286_011 Sorgh... 100 8e-029
gb|CW188072.1|CW188072 104_607_11172825_116_36721_035 Sorgh... 120 1e-028
gb|CF483381.1|CF483381 POL1_21_H02.g1_A002 Pollen Sorghum b... 95 1e-027
gb|CW127527.1|CW127527 104_508_11113488_116_34743_086 Sorgh... 124 2e-027
gb|CW127528.1|CW127528 104_508_11113488_148_34739_086 Sorgh... 124 2e-027
gb|CF759926.1|CF759926 DSAF1_53_B03.b1_A011 Drought-stresse... 61 2e-027
gb|CW175964.1|CW175964 104_588_11158234_148_36576_035 Sorgh... 79 2e-026
gb|CW266594.1|CW266594 104_736_11232514_116_35284_041 Sorgh... 120 4e-026
gb|BI211900.1|BI211900 IP1_62_G07.g1_A002 Immature pannicle... 120 4e-026
gb|AW678491.1|AW678491 WS1_16_C02.b1_A002 Water-stressed 1 ... 119 5e-026
gb|CW112697.1|CW112697 104_486_11105030_148_34544_053 Sorgh... 119 7e-026
gb|CW222795.1|CW222795 104_658_11202566_116_37184_057 Sorgh... 106 8e-026
gb|CF481381.1|CF481381 POL1_71_D07.g1_A002 Pollen Sorghum b... 105 4e-025
gb|CN137781.1|CN137781 OX1_59_C07.g1_A002 Oxidatively-stres... 105 5e-025
gb|CW298073.1|CW298073 104_780_11462383_116_35648_024 Sorgh... 102 3e-024
gb|CW310509.1|CW310509 104_799_11469751_148_37433_020 Sorgh... 102 3e-024
gb|CW040642.1|CW040642 104_274_10506238_116_30480 Sorghum m... 95 6e-023
gb|CW040641.1|CW040641 104_274_10506238_116_30432 Sorghum m... 95 6e-023
gb|CD220070.1|CD220070 CCC1_60_A02.g1_A007 Callus culture/c... 108 1e-022
gb|BG356265.1|BG356265 EM1_23_D11.b1_A002 Embryo 1 (EM1) So... 89 3e-022
gb|CW247960.1|CW247960 104_709_11222039_148_35025_094 Sorgh... 106 5e-022
gb|CF760633.1|CF760633 DSAF1_63_G12.b1_A011 Drought-stresse... 98 1e-021
gb|DN551813.1|DN551813 pSPR-RT-A-H2_D11_C255 pSPR Sorghum p... 100 2e-021
gb|AW564166.1|AW564166 LG1_285_B05.b1_A002 Light Grown 1 (L... 100 2e-021
gb|CW033379.1|CW033379 104_262_10501923_114_30361 Sorghum m... 103 5e-021
gb|CN151385.1|CN151385 WOUND1_75_D08.b1_A002 Wounded leaves... 98 6e-021
>gb|CD428774.1|CD428774 ETH1_36_F11.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_36_F11_A002 3', mRNA sequence
Length = 704
Score = 405 bits (878), Expect(2) = e-127
Identities = 178/189 (94%), Positives = 178/189 (94%)
Frame = +2 / +2
Query: 227 *D*CYH*STW*SS**T*S*PAIEN*AINTDGWVD*DR*ACFCSSSNKFTMGVGCSNAASA 406
*D*CYH*STW*SS* T*S*PAIEN AINTDGWVD*DR*ACFCSSSNKFTMGVGCSNAASA
Sbjct: 2 *D*CYH*STW*SS*RT*S*PAIENGAINTDGWVD*DR*ACFCSSSNKFTMGVGCSNAASA 181
Query: 407 GEAYSCSIARAGC*TCYV*RAPAIYTWHNGDSL*CSCGEN*RIFWL*YSPGMQGSSNAAP 586
GEAYSCSIARA C*T YV*RAPAIYTW NGDSL*CSCGEN*RIFWL*YSP MQGSSNAAP
Sbjct: 182 GEAYSCSIARARC*TSYV*RAPAIYTWQNGDSL*CSCGEN*RIFWL*YSPCMQGSSNAAP 361
Query: 587 KTGNGSS*RQERRGP*G*VA*SWPSNYRRY*TCFEEYKTVCSSSCT*IRKVQPRLWQSCP 766
KT N SS* Q RRGP*G*VA*SWPSNYRRY*TCFEEYKTVCSSSCT*IRKV PRLWQSCP
Sbjct: 362 KTVNDSS*AQARRGP*G*VA*SWPSNYRRY*TCFEEYKTVCSSSCT*IRKV*PRLWQSCP 541
Query: 767 WLKGRSLL* 793
WLKGRSLL*
Sbjct: 542 WLKGRSLL* 568
Score = 368 bits (797), Expect(2) = e-112
Identities = 157/170 (92%), Positives = 162/170 (95%)
Frame = +1 / +1
Query: 283 AGD*KLSY*YRWMG*LRQMSLFLF*QQQIYHGSWMQQCCVGWRSVFLFHCQSRMLDMLCL 462
AGD*K SY*YRWMG*LRQMSLFLF*QQQIYHGSWMQQCCVGWRSVFLFHCQS+MLD LCL
Sbjct: 58 AGD*KRSY*YRWMG*LRQMSLFLF*QQQIYHGSWMQQCCVGWRSVFLFHCQSQMLDKLCL 237
Query: 463 KSSCHIHLAQWRFPMMFLWRKLKDILALIFAWYARKQQCSP*DG*WQFLKAGKKRSLRVS 642
KSSCH+HLA+WRFP+MFLWRKLKDILALIFA YARKQQCSP*DG* QFL AGKKRSLR+S
Sbjct: 238 KSSCHLHLAKWRFPIMFLWRKLKDILALIFALYARKQQCSP*DG**QFLSAGKKRSLRMS 417
Query: 643 CLKLAQ*LQKILNLL*GIQDRLLIFMHIDTKSSTKIMAVMSMAKGEKLVV 792
CLKLAQ*LQKILNLL*GIQDRLLIFMHIDTKS TKIMAVMSMAKG KL V
Sbjct: 418 CLKLAQ*LQKILNLL*GIQDRLLIFMHIDTKSLTKIMAVMSMAKG*KLAV 567
Score = 332 bits (720), Expect(2) = e-100
Identities = 156/189 (82%), Positives = 157/189 (83%)
Frame = -2 / -2
Query: 793 LQQASPL*PWT*LP*SWLNFSYLCA*R*ADGLVFLKASSISSVVXXXXXXXXXXXXXSFL 614
LQQAS L*PWT*LP*SWLNFSYLCA*R*ADGLVFLKASSISSVV S L
Sbjct: 568 LQQASTL*PWT*LP*SWLNFSYLCA*R*ADGLVFLKASSISSVVTGPTSGNSSSGTSSCL 389
Query: 613 PSRTAITRLRGCIAASLHTRRISEPEYPSVFSTRTS*GISIVPGVYGRSSSNIACLASGS 434
SRT I RLRGCIAASLHTRRISEPEYPSVFSTRT *GISI+PGV GRSSSNIACLASGS
Sbjct: 388 RSRTVINRLRGCIAASLHTRRISEPEYPSVFSTRTL*GISILPGVDGRSSSNIACLASGS 209
Query: 433 GNGTXXXXXXXXXXXXSNSHGKFVAARTKTSSSVLVNPSICINSSVFNRRLASCSLRASP 254
GNGT SNSHGKFVAARTKTSSSVLVNPSICINSSVFNRRLASCSLRASP
Sbjct: 208 GNGTRIRFSSRRSIAASNSHGKFVAARTKTSSSVLVNPSICINSSVFNRRLASCSLRASP 29
Query: 253 R*LMIASIS 227
R*LMIASIS
Sbjct: 28 R*LMIASIS 2
Score = 323 bits (700), Expect(3) = e-107
Identities = 128/140 (91%), Positives = 131/140 (93%)
Frame = -1 / -1
Query: 791 TTSFSPLAMDMTAIILVELFVSMCMKMSRRSCIPQSKFNIFCSYWANFRQLTLRDLFFPA 612
T SF PLAMDMTAIILV+LFVSMCMKMSRRSCIPQSKFNIFCSYWANFRQL LRDLF PA
Sbjct: 566 TASFYPLAMDMTAIILVKLFVSMCMKMSRRSCIPQSKFNIFCSYWANFRQLILRDLFLPA 387
Query: 611 FKNCHYPS*GLHCCFLAYQANIRARISFSFLHKNIIGNLHCARCIWQELFKHSMSSIRLW 432
KNCH PS*GLHCCFLAY+ANIRARISFSFLHKNIIGNLH ARC WQELFKHS+SSI LW
Sbjct: 386 LKNCH*PS*GLHCCFLAYKANIRARISFSFLHKNIIGNLHFARCRWQELFKHSLSSIWLW 207
Query: 431 QWNKNTLLQPTQHCCIQLPW 372
QWNKNTLLQPTQHCCIQLPW
Sbjct: 206 QWNKNTLLQPTQHCCIQLPW 147
Score = 283 bits (612), Expect(3) = e-117
Identities = 123/131 (93%), Positives = 126/131 (96%)
Frame = +3 / +3
Query: 228 EIDAIISQRGEARSEHEASRRLKTELLIQMDGLTKTDELVFVLAATNLPWELDAAMLRRL 407
EIDAIISQRGEARSEHEASRRLKTELLIQMDGLTKTDELVFVLAATNLPWELDAAMLRRL
Sbjct: 3 EIDAIISQRGEARSEHEASRRLKTELLIQMDGLTKTDELVFVLAATNLPWELDAAMLRRL 182
Query: 408 EKRILVPLPEPDARHAMFEELLPYTPGTMEIPYDVLVEKTEGYSGSDIRLVCKEAAMQPL 587
EKRILVPLPEPDAR AMFEELLP TPG MEIPY+VLVEKTEGYSGSDIRLVCKEAAMQPL
Sbjct: 183 EKRILVPLPEPDARQAMFEELLPSTPGKMEIPYNVLVEKTEGYSGSDIRLVCKEAAMQPL 362
Query: 588 RRVMAVLEGRK 620
RR+M VLE R+
Sbjct: 363 RRLMTVLERRQ 395
Score = 263 bits (568), Expect(3) = e-104
Identities = 118/140 (84%), Positives = 120/140 (85%)
Frame = -3 / -3
Query: 645 ATHPQGPLLSCLQEXXXXXXXXXXXXPCIPGEYQSQNILQFSPQEHHRESPLCQVYMAGA 466
ATHPQGPLL+C QE PCI GEYQSQNILQFSPQEH+RESP CQV MAGA
Sbjct: 420 ATHPQGPLLACAQELSLTVLGAALLLPCIQGEYQSQNILQFSPQEHYRESPFCQV*MAGA 241
Query: 465 LQT*HV*HPALAMEQEYASPADAALLHPTPMVNLLLLEQKQAHLS*STHPSVLIAQFSIA 286
LQT* V*H ALAMEQEYASPADAALLHPTPMVNLLLLEQKQAHLS*STHPSVLIA FSIA
Sbjct: 240 LQT*LV*HLALAMEQEYASPADAALLHPTPMVNLLLLEQKQAHLS*STHPSVLIAPFSIA 61
Query: 285 G*LHVHYELHHVD***HQSH 226
G*LHV YELHHVD***HQSH
Sbjct: 60 G*LHVRYELHHVD***HQSH 1
Score = 108 bits (230), Expect(3) = e-117
Identities = 42/44 (95%), Positives = 43/44 (97%)
Frame = +3 / +3
Query: 663 TTEDIELALRNTRPSAHLHAHRYEKFNQDYGSHVHG*RGEACCR 794
TTEDIELALRNTRPSAHLHAHRYEKFNQDYGSHVHG*R EACC+
Sbjct: 438 TTEDIELALRNTRPSAHLHAHRYEKFNQDYGSHVHG*RVEACCK 569
Score = 91.3 bits (193), Expect(3) = e-104
Identities = 35/36 (97%), Positives = 36/36 (100%)
Frame = -3 / -3
Query: 792 YNKLLPFSHGHDCHNLG*TFRIYVHEDEQTVLYSSK 685
Y+KLLPFSHGHDCHNLG*TFRIYVHEDEQTVLYSSK
Sbjct: 567 YSKLLPFSHGHDCHNLG*TFRIYVHEDEQTVLYSSK 460
Score = 73.5 bits (154), Expect(2) = e-127
Identities = 27/34 (79%), Positives = 32/34 (94%)
Frame = +3 / +2
Query: 792 RV*FVCSCVGQ*VTTEFIDMLRYPCKHYAYPCML 893
+V*FVCSC+GQ*+ TEFI++LRYPCKHYAYP ML
Sbjct: 569 KV*FVCSCLGQ*INTEFINVLRYPCKHYAYPWML 670
Score = 70.7 bits (148), Expect(3) = e-117
Identities = 29/32 (90%), Positives = 30/32 (93%)
Frame = +1 / +3
Query: 796 FNLYAHAWANR*LLNSSTC*GILVNTMLILVC 891
FNLYAHAWANR +LNSSTC*GILVNTMLIL C
Sbjct: 573 FNLYAHAWANRSILNSSTC*GILVNTMLILGC 668
Score = 68.0 bits (142), Expect(3) = e-107
Identities = 28/33 (84%), Positives = 29/33 (87%)
Frame = -2 / -3
Query: 892 SIQG*A*CLQGYLSMSMNSVVTYWPTHEHTN*T 794
SIQG*A*CLQGYLS MNSV+ YWP HEHTN*T
Sbjct: 669 SIQG*A*CLQGYLSTLMNSVLIYWPKHEHTN*T 571
Score = 66.1 bits (138), Expect(3) = e-104
Identities = 29/33 (87%), Positives = 29/33 (87%)
Frame = -1 / -2
Query: 893 QHTRISIVFTRIPQHVDEFSSHLLAHA*AYKLN 795
QH RISIVFTRIPQHVDEFS LLA A*AYKLN
Sbjct: 670 QHPRISIVFTRIPQHVDEFSIDLLAQA*AYKLN 572
Score = 60.2 bits (125), Expect(2) = e-112
Identities = 27/33 (81%), Positives = 28/33 (84%)
Frame = +2 / +1
Query: 794 GLICMLMRGPIGDY*IHRHAEVSL*TLCLSLYA 892
GLICMLM GPI Y*IH+ AEVSL*TLCLSL A
Sbjct: 571 GLICMLMLGPIDQY*IHQRAEVSL*TLCLSLDA 669
Score = 54.2 bits (112), Expect(2) = e-100
Identities = 26/34 (76%), Positives = 27/34 (79%)
Frame = -3 / -1
Query: 891 AYKDKHSVYKDTSACR*IQ*SPIGPRMSIQIKPY 790
A KDKHSVYKDTSA *IQ IGP MSIQIKP+
Sbjct: 668 ASKDKHSVYKDTSAR**IQY*SIGPSMSIQIKPF 567
Score = 38.6 bits (78), Expect(3) = e-107
Identities = 19/34 (55%), Positives = 19/34 (55%)
Frame = -1 / -1
Query: 329 SQPIHLY**LSFQXXXXXXXXXXXXXXTNDSINL 228
SQPIHLY**L FQ TNDSINL
Sbjct: 104 SQPIHLY**LRFQSPASFMFATSFTTLTNDSINL 3
>gb|BE357360.1|BE357360 DG1_148_A09.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 703
Score = 238 bits (514), Expect(2) = 3e-079
Identities = 101/116 (87%), Positives = 110/116 (94%)
Frame = +3 / +1
Query: 264 RSEHEASRRLKTELLIQMDGLTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPD 443
RSEHEASRRLKTELLIQMDGLTKT++LVFVLAATNLPWELDAAMLRRLEKRILVPLPE +
Sbjct: 1 RSEHEASRRLKTELLIQMDGLTKTNDLVFVLAATNLPWELDAAMLRRLEKRILVPLPEAE 180
Query: 444 ARHAMFEELLPYTPGTMEIPYDVLVEKTEGYSGSDIRLVCKEAAMQPLRRVMAVLE 611
AR AMFEELLP T +E+PY++LVEKTEGYSGSDIRLVCKEAAMQPLRR+M+VLE
Sbjct: 181 ARQAMFEELLPATTSKLEVPYNILVEKTEGYSGSDIRLVCKEAAMQPLRRLMSVLE 348
Score = 199 bits (430), Expect = 4e-050
Identities = 103/166 (62%), Positives = 108/166 (65%)
Frame = -2 / -3
Query: 763 T*LP*SWLNFSYLCA*R*ADGLVFLKASSISSVVXXXXXXXXXXXXXSFLPSRTAITRLR 584
T LP*SWLNFS CA R ADGLVFL ASSISS S L SRT + RL
Sbjct: 500 TWLP*SWLNFS*RCAWRWADGLVFLNASSISSGFRGPTSGSSSSGTNSSLASRTDMRRLS 321
Query: 583 GCIAASLHTRRISEPEYPSVFSTRTS*GISIVPGVYGRSSSNIACLASGSGNGTXXXXXX 404
GC+AASLHTRRISEPE PSVFST G S V GRSSSNIACLAS SG+GT
Sbjct: 320 GCMAASLHTRRISEPE*PSVFSTSMLYGTSNFEVVAGRSSSNIACLASASGSGTRIRFSS 141
Query: 403 XXXXXXSNSHGKFVAARTKTSSSVLVNPSICINSSVFNRRLASCSL 266
SNSHG+FVAA T T S V V PSI I+SSVF RRLASCSL
Sbjct: 140 LRSIAASNSHGRFVAASTNTKSFVFVKPSI*ISSSVFKRRLASCSL 3
Score = 112 bits (239), Expect = 8e-024
Identities = 51/131 (38%), Positives = 71/131 (54%)
Frame = -1 / -2
Query: 764 DMTAIILVELFVSMCMKMSRRSCIPQSKFNIFCSYWANFRQLTLRDLFFPAFKNCHYPS* 585
D+ I+LVEL ++MCM+M R +P KFNIF N RQ L FKN H S
Sbjct: 501 DLATIVLVELLIAMCMEMG*RPSVP*CKFNIFRFQRTNLRQFFLWHQLITGFKN*HETSE 322
Query: 584 GLHCCFLAYQANIRARISFSFLHKNIIGNLHCARCIWQELFKHSMSSIRLWQWNKNTLLQ 405
LH F A++ +I R++FS + ++ NL WQ+ KH + + KN+LL+
Sbjct: 321 WLHGSFFAHKTDI*TRVTFSLFN*YVVRNL*L*GSRWQKFLKHCLPCFSFRKRYKNSLLK 142
Query: 404 PTQHCCIQLPW 372
P +H CIQ PW
Sbjct: 141 PAEHSCIQFPW 109
Score = 111 bits (236), Expect = 2e-023
Identities = 63/163 (38%), Positives = 85/163 (52%)
Frame = +1 / +2
Query: 292 *KLSY*YRWMG*LRQMSLFLF*QQQIYHGSWMQQCCVGWRSVFLFHCQSRMLDMLCLKSS 471
*+L+Y +RWM * RQ + +L+ Q QI+HG+WMQ C G RS FL+ CL++
Sbjct: 29 *RLNYLFRWMV*QRQTTWYLYLQLQIFHGNWMQLCSAGLRSEFLYRFLKLKQGKQCLRNF 208
Query: 472 CHIHLAQWRFPMMFLWRKLKDILALIFAWYARKQQCSP*DG*WQFLKAGKKRSLRVSCLK 651
C RF + ++LK L I A+K C+ D QFLK R +CL+
Sbjct: 209 CQRLPQS*RFRTTY*LKRLKVTLVQISVLCAKKLPCNHSDVSCQFLKPVMSWCQRKNCLR 388
Query: 652 LAQ*LQKILNLL*GIQDRLLIFMHIDTKSSTKIMAVMSMAKGE 780
L * KILNL *G R I MHI +SST+ M S + +
Sbjct: 389 LVL*NLKILNLH*GTLGRQPISMHIAMRSSTRTMVARSFVQSQ 517
Score = 79.0 bits (166), Expect(2) = 3e-079
Identities = 31/32 (96%), Positives = 31/32 (96%)
Frame = +3 / +1
Query: 669 EDIELALRNTRPSAHLHAHRYEKFNQDYGSHV 764
EDIELALRNTRPSAHLHAHRYEKFNQDYGS V
Sbjct: 406 EDIELALRNTRPSAHLHAHRYEKFNQDYGSQV 501
>gb|BF481293.1|BF481293 FM1_18_B07.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 436
Score = 252 bits (545), Expect(2) = 1e-077
Identities = 102/114 (89%), Positives = 105/114 (92%)
Frame = -1 / -1
Query: 791 TTSFSPLAMDMTAIILVELFVSMCMKMSRRSCIPQSKFNIFCSYWANFRQLTLRDLFFPA 612
T SF PLAMDMTAIILV+LFVSMCMKMS RSCIPQSK+NIFCSYWANFRQL LRDLF PA
Sbjct: 343 TASFYPLAMDMTAIILVKLFVSMCMKMSTRSCIPQSKYNIFCSYWANFRQLILRDLFLPA 164
Query: 611 FKNCHYPS*GLHCCFLAYQANIRARISFSFLHKNIIGNLHCARCIWQELFKHSM 450
KNCH PS*GLHCCFLAY+ANIRARISFSFLHKNIIGNLH ARC WQELFKHSM
Sbjct: 163 LKNCH*PS*GLHCCFLAYRANIRARISFSFLHKNIIGNLHFARCRWQELFKHSM 2
Score = 248 bits (535), Expect(2) = 2e-078
Identities = 106/115 (92%), Positives = 106/115 (92%)
Frame = +2 / +1
Query: 449 TCYV*RAPAIYTWHNGDSL*CSCGEN*RIFWL*YSPGMQGSSNAAPKTGNGSS*RQERRG 628
TCYV*RAPAIYTW N DSL*CSCGEN*RIFWL*YSP MQGSSNAAPKT N SS* Q RRG
Sbjct: 1 TCYV*RAPAIYTWQNVDSL*CSCGEN*RIFWL*YSPCMQGSSNAAPKTVNDSS*AQARRG 180
Query: 629 P*G*VA*SWPSNYRRY*TCFEEYKTVCSSSCT*IRKVQPRLWQSCPWLKGRSLL* 793
P*G*VA*SWPSNYRRY TCFEEYKTVCSSSCT*IRKV PRLWQSCPWLKGRSLL*
Sbjct: 181 P*G*VA*SWPSNYRRYCTCFEEYKTVCSSSCT*IRKV*PRLWQSCPWLKGRSLL* 345
Score = 228 bits (492), Expect(2) = 2e-072
Identities = 102/114 (89%), Positives = 106/114 (92%)
Frame = +1 / +3
Query: 451 MLCLKSSCHIHLAQWRFPMMFLWRKLKDILALIFAWYARKQQCSP*DG*WQFLKAGKKRS 630
MLCLKSSCH+HLA+ RFPMMFLWRKLKDILALIFA YARKQQCSP*DG* QFL AGKKRS
Sbjct: 3 MLCLKSSCHLHLAKCRFPMMFLWRKLKDILALIFALYARKQQCSP*DG**QFLSAGKKRS 182
Query: 631 LRVSCLKLAQ*LQKILNLL*GIQDRLLIFMHIDTKSSTKIMAVMSMAKGEKLVV 792
LR+SCLKLAQ*LQKIL LL*GIQDR+LIFMHIDTKS TKIMAVMSMAKG KL V
Sbjct: 183 LRMSCLKLAQ*LQKILYLL*GIQDRVLIFMHIDTKSLTKIMAVMSMAKG*KLAV 344
Score = 193 bits (416), Expect(2) = 1e-059
Identities = 91/115 (79%), Positives = 93/115 (80%)
Frame = -2 / -2
Query: 793 LQQASPL*PWT*LP*SWLNFSYLCA*R*ADGLVFLKASSISSVVXXXXXXXXXXXXXSFL 614
LQQAS L*PWT*LP*SWLNFSYLCA*R*A GLVFLKAS+ISSVV S L
Sbjct: 345 LQQASTL*PWT*LP*SWLNFSYLCA*R*AHGLVFLKASTISSVVTGPTSGNSSSGTSSCL 166
Query: 613 PSRTAITRLRGCIAASLHTRRISEPEYPSVFSTRTS*GISIVPGVYGRSSSNIAC 449
SRT I RLRGCIAASLHT RISEPEYPSVFSTRTS*GI I+PGV GRSSSNIAC
Sbjct: 165 RSRTVINRLRGCIAASLHTGRISEPEYPSVFSTRTS*GIYILPGVDGRSSSNIAC 1
Score = 114 bits (244), Expect(3) = 2e-060
Identities = 49/57 (85%), Positives = 51/57 (89%)
Frame = +3 / +2
Query: 450 HAMFEELLPYTPGTMEIPYDVLVEKTEGYSGSDIRLVCKEAAMQPLRRVMAVLEGRK 620
HAMFEELLP TPG M IPYDVLVEKTEGYSGSDIR VCKEAAMQPLRR+M VLE R+
Sbjct: 2 HAMFEELLPSTPGKM*IPYDVLVEKTEGYSGSDIRPVCKEAAMQPLRRLMTVLERRQ 172
Score = 110 bits (234), Expect(3) = 1e-053
Identities = 47/65 (72%), Positives = 48/65 (73%)
Frame = -3 / -3
Query: 645 ATHPQGPLLSCLQEXXXXXXXXXXXXPCIPGEYQSQNILQFSPQEHHRESPLCQVYMAGA 466
ATHPQGPLL+C QE PCI GEYQSQNILQFSPQEHHRES CQV MAGA
Sbjct: 197 ATHPQGPLLACAQELSLTVLGAALLLPCIQGEYQSQNILQFSPQEHHRESTFCQV*MAGA 18
Query: 465 LQT*H 451
LQT*H
Sbjct: 17 LQT*H 3
Score = 102 bits (218), Expect(3) = 2e-060
Identities = 40/44 (90%), Positives = 41/44 (93%)
Frame = +3 / +2
Query: 663 TTEDIELALRNTRPSAHLHAHRYEKFNQDYGSHVHG*RGEACCR 794
TTEDI LALRNTRP AHLHAHRYEKFNQDYGSHVHG*R EACC+
Sbjct: 215 TTEDIVLALRNTRPCAHLHAHRYEKFNQDYGSHVHG*RVEACCK 346
Score = 89.0 bits (188), Expect(3) = 1e-053
Identities = 34/36 (94%), Positives = 35/36 (97%)
Frame = -3 / -3
Query: 792 YNKLLPFSHGHDCHNLG*TFRIYVHEDEQTVLYSSK 685
Y+KLLPFSHGHDCHNLG*TFRIYVHEDE TVLYSSK
Sbjct: 344 YSKLLPFSHGHDCHNLG*TFRIYVHEDEHTVLYSSK 237
Score = 67.0 bits (140), Expect(2) = 2e-078
Identities = 24/30 (80%), Positives = 29/30 (96%)
Frame = +3 / +1
Query: 792 RV*FVCSCVGQ*VTTEFIDMLRYPCKHYAY 881
+V*FVCSC+GQ*+ TEFI++LRYPCKHYAY
Sbjct: 346 KV*FVCSCLGQ*INTEFINVLRYPCKHYAY 435
Score = 66.1 bits (138), Expect(2) = 2e-072
Identities = 27/29 (93%), Positives = 28/29 (96%)
Frame = +1 / +2
Query: 796 FNLYAHAWANR*LLNSSTC*GILVNTMLI 882
FNLYAHAWANR +LNSSTC*GILVNTMLI
Sbjct: 350 FNLYAHAWANRSILNSSTC*GILVNTMLI 436
Score = 59.3 bits (123), Expect(2) = 1e-077
Identities = 24/29 (82%), Positives = 25/29 (86%)
Frame = -2 / -3
Query: 880 *A*CLQGYLSMSMNSVVTYWPTHEHTN*T 794
*A*CLQGYLS MNSV+ YWP HEHTN*T
Sbjct: 434 *A*CLQGYLSTLMNSVLIYWPKHEHTN*T 348
Score = 58.3 bits (121), Expect(2) = 1e-059
Identities = 26/29 (89%), Positives = 26/29 (89%)
Frame = -1 / -2
Query: 881 ISIVFTRIPQHVDEFSSHLLAHA*AYKLN 795
ISIVFTRIPQHVDEFS LLA A*AYKLN
Sbjct: 435 ISIVFTRIPQHVDEFSIDLLAQA*AYKLN 349
Score = 56.1 bits (116), Expect(3) = 2e-060
Identities = 24/29 (82%), Positives = 25/29 (86%)
Frame = +2 / +3
Query: 794 GLICMLMRGPIGDY*IHRHAEVSL*TLCL 880
GLICMLM GPI Y*IH+ AEVSL*TLCL
Sbjct: 348 GLICMLMLGPIDQY*IHQRAEVSL*TLCL 434
Score = 51.0 bits (105), Expect(3) = 1e-053
Identities = 24/31 (77%), Positives = 25/31 (80%)
Frame = -3 / -1
Query: 882 DKHSVYKDTSACR*IQ*SPIGPRMSIQIKPY 790
DKHSVYKDTSA *IQ IGP MSIQIKP+
Sbjct: 436 DKHSVYKDTSAR**IQY*SIGPSMSIQIKPF 344
>gb|CW438479.1|CW438479 fsbb001f156c01f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f156c01, DNA
sequence
Length = 788
Score = 127 bits (271), Expect(3) = 5e-078
Identities = 52/66 (78%), Positives = 60/66 (90%)
Frame = +3 / -1
Query: 414 RILVPLPEPDARHAMFEELLPYTPGTMEIPYDVLVEKTEGYSGSDIRLVCKEAAMQPLRR 593
+ILVPLPE +AR AMFEELLP T +E+PY++LVEKTEGYSGSDIRLVCKEAAMQPLRR
Sbjct: 260 QILVPLPEAEARQAMFEELLPATTSKLEVPYNILVEKTEGYSGSDIRLVCKEAAMQPLRR 81
Query: 594 VMAVLE 611
+M+VLE
Sbjct: 80 LMSVLE 63
Score = 124 bits (266), Expect(3) = 5e-078
Identities = 54/56 (96%), Positives = 56/56 (100%)
Frame = +3 / -1
Query: 150 RGDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQM 317
+GDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ+
Sbjct: 770 QGDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQV 603
Score = 96.4 bits (204), Expect(4) = 6e-047
Identities = 46/65 (70%), Positives = 49/65 (75%)
Frame = -2 / +1
Query: 616 LPSRTAITRLRGCIAASLHTRRISEPEYPSVFSTRTS*GISIVPGVYGRSSSNIACLASG 437
L SRT + RL GC+AASLHTRRISEPE PSVFST G S V GRSSSNIACLAS
Sbjct: 58 LASRTDMRRLSGCMAASLHTRRISEPE*PSVFSTSMLYGTSNFEVVAGRSSSNIACLASA 237
Query: 436 SGNGT 422
SG+GT
Sbjct: 238 SGSGT 252
Score = 84.5 bits (178), Expect(3) = 5e-078
Identities = 34/40 (85%), Positives = 39/40 (97%)
Frame = +3 / -3
Query: 300 ELLIQMDGLTKTDELVFVLAATNLPWELDAAMLRRLEKRI 419
+ L+QMDGLTKT++LVFVLAATNLPWELDAAMLRRLEKR+
Sbjct: 462 QCLLQMDGLTKTNDLVFVLAATNLPWELDAAMLRRLEKRV 343
Score = 79.9 bits (168), Expect(4) = 6e-047
Identities = 38/53 (71%), Positives = 41/53 (77%)
Frame = -2 / +1
Query: 310 INSSVFNRRLASCSLRASPR*LMIASISSRKIVDGA*CLAXXXXXXXXXSESP 152
I+SSVF RRLASCSLRASPR L++ASISSR IVDGA*CLA SESP
Sbjct: 610 ISSSVFKRRLASCSLRASPRWLIMASISSRNIVDGA*CLASSNRTLTSFSESP 768
Score = 42.8 bits (87), Expect(4) = 6e-047
Identities = 17/24 (70%), Positives = 18/24 (75%)
Frame = -2 / +2
Query: 382 NSHGKFVAARTKTSSSVLVNPSIC 311
NSHG+FVAA T T S V V PSIC
Sbjct: 380 NSHGRFVAASTNTKSFVFVKPSIC 451
Score = 31.3 bits (62), Expect(4) = 6e-047
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1 / +1
Query: 416 TLLQPTQHCCIQLPW 372
+LL+P +H CIQ PW
Sbjct: 346 SLLKPAEHSCIQFPW 390
>gb|AW680176.1|AW680176 WS1_4_A08.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 711
Score = 205 bits (442), Expect(2) = 3e-069
Identities = 86/101 (85%), Positives = 95/101 (94%)
Frame = +3 / +3
Query: 309 IQMDGLTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDARHAMFEELLPYTPG 488
IQMDGLTKT++LVFVLAATNLPWELDAAMLRRLEKRILVPLPE +AR AMFEELLP T
Sbjct: 3 IQMDGLTKTNDLVFVLAATNLPWELDAAMLRRLEKRILVPLPEAEARQAMFEELLPATTS 182
Query: 489 TMEIPYDVLVEKTEGYSGSDIRLVCKEAAMQPLRRVMAVLE 611
+E+PY++LVEKTEGYSGSDIRLVCKEAAMQPLRR+M+VLE
Sbjct: 183 KLEVPYNILVEKTEGYSGSDIRLVCKEAAMQPLRRLMSVLE 305
Score = 173 bits (372), Expect = 4e-042
Identities = 90/150 (60%), Positives = 94/150 (62%)
Frame = -2 / -3
Query: 763 T*LP*SWLNFSYLCA*R*ADGLVFLKASSISSVVXXXXXXXXXXXXXSFLPSRTAITRLR 584
T LP*SWLNFS CA R ADGLVFL ASSISS S L SRT + RL
Sbjct: 457 TWLP*SWLNFS*RCAWRWADGLVFLNASSISSGFRGPTSGSSSSGTNSSLASRTDMRRLS 278
Query: 583 GCIAASLHTRRISEPEYPSVFSTRTS*GISIVPGVYGRSSSNIACLASGSGNGTXXXXXX 404
GC+AASLHTRRISEPE PSVFST G S V GRSSSNIACLAS SG+GT
Sbjct: 277 GCMAASLHTRRISEPE*PSVFSTSMLYGTSNFEVVAGRSSSNIACLASASGSGTRIRFSS 98
Query: 403 XXXXXXSNSHGKFVAARTKTSSSVLVNPSI 314
SNSHG+FVAA T T S V V PSI
Sbjct: 97 LRSIAASNSHGRFVAASTNTKSFVFVKPSI 8
Score = 112 bits (239), Expect = 8e-024
Identities = 51/131 (38%), Positives = 71/131 (54%)
Frame = -1 / -2
Query: 764 DMTAIILVELFVSMCMKMSRRSCIPQSKFNIFCSYWANFRQLTLRDLFFPAFKNCHYPS* 585
D+ I+LVEL ++MCM+M R +P KFNIF N RQ L FKN H S
Sbjct: 458 DLATIVLVELLIAMCMEMG*RPSVP*CKFNIFRFQRTNLRQFFLWHQLITGFKN*HETSE 279
Query: 584 GLHCCFLAYQANIRARISFSFLHKNIIGNLHCARCIWQELFKHSMSSIRLWQWNKNTLLQ 405
LH F A++ +I R++FS + ++ NL WQ+ KH + + KN+LL+
Sbjct: 278 WLHGSFFAHKTDI*TRVTFSLFN*YVVRNL*L*GSRWQKFLKHCLPCFSFRKRYKNSLLK 99
Query: 404 PTQHCCIQLPW 372
P +H CIQ PW
Sbjct: 98 PAEHSCIQFPW 66
Score = 105 bits (225), Expect = 7e-022
Identities = 60/157 (38%), Positives = 80/157 (50%)
Frame = +1 / +1
Query: 310 YRWMG*LRQMSLFLF*QQQIYHGSWMQQCCVGWRSVFLFHCQSRMLDMLCLKSSCHIHLA 489
+RWM * RQ + +L+ Q QI+HG+WMQ C G RS FL+ CL++ C
Sbjct: 4 FRWMV*QRQTTWYLYLQLQIFHGNWMQLCSAGLRSEFLYRFLKLKQGKQCLRNFCQRLPQ 183
Query: 490 QWRFPMMFLWRKLKDILALIFAWYARKQQCSP*DG*WQFLKAGKKRSLRVSCLKLAQ*LQ 669
RF + ++LK L I A+K C+ D QFLK R +CL+L *
Sbjct: 184 S*RFRTTY*LKRLKVTLVQISVLCAKKLPCNHSDVSCQFLKPVMSWCQRKNCLRLVL*NL 363
Query: 670 KILNLL*GIQDRLLIFMHIDTKSSTKIMAVMSMAKGE 780
KILNL *G R I MHI +SST+ M S + +
Sbjct: 364 KILNLH*GTLGRQPISMHIAMRSSTRTMVARSFVQSQ 474
Score = 79.0 bits (166), Expect(2) = 3e-069
Identities = 31/32 (96%), Positives = 31/32 (96%)
Frame = +3 / +3
Query: 669 EDIELALRNTRPSAHLHAHRYEKFNQDYGSHV 764
EDIELALRNTRPSAHLHAHRYEKFNQDYGS V
Sbjct: 363 EDIELALRNTRPSAHLHAHRYEKFNQDYGSQV 458
>gb|CN146048.1|CN146048 WOUND1_37_D01.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_37_D01_A002 3', mRNA sequence
Length = 823
Score = 201 bits (434), Expect(2) = 3e-068
Identities = 84/100 (84%), Positives = 94/100 (94%)
Frame = +3 / +1
Query: 312 QMDGLTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDARHAMFEELLPYTPGT 491
QMDGLTKT++LVFVLAATNLPWELDAAMLRRLEKRILVPLPE +AR AMFEELLP T
Sbjct: 1 QMDGLTKTNDLVFVLAATNLPWELDAAMLRRLEKRILVPLPEAEARQAMFEELLPATTSK 180
Query: 492 MEIPYDVLVEKTEGYSGSDIRLVCKEAAMQPLRRVMAVLE 611
+E+PY++LVE+TEGYSGSDIRLVCKEAAMQPLRR+M+VLE
Sbjct: 181 LEVPYNILVEETEGYSGSDIRLVCKEAAMQPLRRLMSVLE 300
Score = 169 bits (364), Expect = 5e-041
Identities = 89/150 (59%), Positives = 93/150 (62%)
Frame = -2 / -3
Query: 763 T*LP*SWLNFSYLCA*R*ADGLVFLKASSISSVVXXXXXXXXXXXXXSFLPSRTAITRLR 584
T LP*SWLNFS CA R ADGLVFL ASSISS S L SRT + RL
Sbjct: 452 TWLP*SWLNFS*RCAWRWADGLVFLNASSISSGFRGPTSGSSSSGTNSSLASRTDMRRLS 273
Query: 583 GCIAASLHTRRISEPEYPSVFSTRTS*GISIVPGVYGRSSSNIACLASGSGNGTXXXXXX 404
GC+AASLHTRRISEPE PSV ST G S V GRSSSNIACLAS SG+GT
Sbjct: 272 GCMAASLHTRRISEPE*PSVSSTSMLYGTSNFEVVAGRSSSNIACLASASGSGTRIRFSS 93
Query: 403 XXXXXXSNSHGKFVAARTKTSSSVLVNPSI 314
SNSHG+FVAA T T S V V PSI
Sbjct: 92 LRSIAASNSHGRFVAASTNTKSFVFVKPSI 3
Score = 112 bits (239), Expect = 8e-024
Identities = 51/131 (38%), Positives = 71/131 (54%)
Frame = -1 / -2
Query: 764 DMTAIILVELFVSMCMKMSRRSCIPQSKFNIFCSYWANFRQLTLRDLFFPAFKNCHYPS* 585
D+ I+LVEL ++MCM+M R +P KFNIF N RQ L FKN H S
Sbjct: 453 DLATIVLVELLIAMCMEMG*RPSVP*CKFNIFRFQRTNLRQFFLWHQLITGFKN*HETSE 274
Query: 584 GLHCCFLAYQANIRARISFSFLHKNIIGNLHCARCIWQELFKHSMSSIRLWQWNKNTLLQ 405
LH F A++ +I R++FS + ++ NL WQ+ KH + + KN+LL+
Sbjct: 273 WLHGSFFAHKTDI*TRVTFSLFN*YVVRNL*L*GSRWQKFLKHCLPCFSFRKRYKNSLLK 94
Query: 404 PTQHCCIQLPW 372
P +H CIQ PW
Sbjct: 93 PAEHSCIQFPW 61
Score = 104 bits (222), Expect = 2e-021
Identities = 60/156 (38%), Positives = 79/156 (50%)
Frame = +1 / +2
Query: 313 RWMG*LRQMSLFLF*QQQIYHGSWMQQCCVGWRSVFLFHCQSRMLDMLCLKSSCHIHLAQ 492
RWM * RQ + +L+ Q QI+HG+WMQ C G RS FL+ CL++ C
Sbjct: 2 RWMV*QRQTTWYLYLQLQIFHGNWMQLCSAGLRSEFLYRFLKLKQGKQCLRNFCQRLPQS 181
Query: 493 WRFPMMFLWRKLKDILALIFAWYARKQQCSP*DG*WQFLKAGKKRSLRVSCLKLAQ*LQK 672
RF + ++LK L I A+K C+ D QFLK R +CL+L * K
Sbjct: 182 *RFRTTY*LKRLKVTLVQISVLCAKKLPCNHSDVSCQFLKPVMSWCQRKNCLRLVL*NLK 361
Query: 673 ILNLL*GIQDRLLIFMHIDTKSSTKIMAVMSMAKGE 780
ILNL *G R I MHI +SST+ M S + +
Sbjct: 362 ILNLH*GTLGRQPISMHIAMRSSTRTMVARSFVQSQ 469
Score = 79.0 bits (166), Expect(2) = 3e-068
Identities = 31/32 (96%), Positives = 31/32 (96%)
Frame = +3 / +1
Query: 669 EDIELALRNTRPSAHLHAHRYEKFNQDYGSHV 764
EDIELALRNTRPSAHLHAHRYEKFNQDYGS V
Sbjct: 358 EDIELALRNTRPSAHLHAHRYEKFNQDYGSQV 453
>gb|BE357305.1|BE357305 DG1_148_A08.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 639
Score = 189 bits (407), Expect(2) = 2e-064
Identities = 79/94 (84%), Positives = 88/94 (93%)
Frame = +3 / +2
Query: 330 KTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDARHAMFEELLPYTPGTMEIPYD 509
KT++LVFVLAATNLPWELDAAMLRRLEKRILVPLPE +AR AMFEELLP T +E+PY+
Sbjct: 2 KTNDLVFVLAATNLPWELDAAMLRRLEKRILVPLPEAEARQAMFEELLPATTSKLEVPYN 181
Query: 510 VLVEKTEGYSGSDIRLVCKEAAMQPLRRVMAVLE 611
+LVEKTEGYSGSDIRLVCKEAAMQPLRR+M+VLE
Sbjct: 182 ILVEKTEGYSGSDIRLVCKEAAMQPLRRLMSVLE 283
Score = 164 bits (353), Expect = 2e-039
Identities = 86/144 (59%), Positives = 90/144 (62%)
Frame = -2 / -1
Query: 763 T*LP*SWLNFSYLCA*R*ADGLVFLKASSISSVVXXXXXXXXXXXXXSFLPSRTAITRLR 584
T LP*SWLNFS CA R ADGLVFL ASSISS S L SRT + RL
Sbjct: 435 TWLP*SWLNFS*RCAWRWADGLVFLNASSISSGFRGPTSGSSSSGTNSSLASRTDMRRLS 256
Query: 583 GCIAASLHTRRISEPEYPSVFSTRTS*GISIVPGVYGRSSSNIACLASGSGNGTXXXXXX 404
GC+AASLHTRRISEPE PSVFST G S V GRSSSNIACLAS SG+GT
Sbjct: 255 GCMAASLHTRRISEPE*PSVFSTSMLYGTSNFEVVAGRSSSNIACLASASGSGTRIRFSS 76
Query: 403 XXXXXXSNSHGKFVAARTKTSSSV 332
SNSHG+FVAA T T S V
Sbjct: 75 LRSIAASNSHGRFVAASTNTKSFV 4
Score = 112 bits (239), Expect = 8e-024
Identities = 51/131 (38%), Positives = 71/131 (54%)
Frame = -1 / -3
Query: 764 DMTAIILVELFVSMCMKMSRRSCIPQSKFNIFCSYWANFRQLTLRDLFFPAFKNCHYPS* 585
D+ I+LVEL ++MCM+M R +P KFNIF N RQ L FKN H S
Sbjct: 436 DLATIVLVELLIAMCMEMG*RPSVP*CKFNIFRFQRTNLRQFFLWHQLITGFKN*HETSE 257
Query: 584 GLHCCFLAYQANIRARISFSFLHKNIIGNLHCARCIWQELFKHSMSSIRLWQWNKNTLLQ 405
LH F A++ +I R++FS + ++ NL WQ+ KH + + KN+LL+
Sbjct: 256 WLHGSFFAHKTDI*TRVTFSLFN*YVVRNL*L*GSRWQKFLKHCLPCFSFRKRYKNSLLK 77
Query: 404 PTQHCCIQLPW 372
P +H CIQ PW
Sbjct: 76 PAEHSCIQFPW 44
Score = 79.0 bits (166), Expect(2) = 2e-064
Identities = 31/32 (96%), Positives = 31/32 (96%)
Frame = +3 / +2
Query: 669 EDIELALRNTRPSAHLHAHRYEKFNQDYGSHV 764
EDIELALRNTRPSAHLHAHRYEKFNQDYGS V
Sbjct: 341 EDIELALRNTRPSAHLHAHRYEKFNQDYGSQV 436
>gb|CN146103.1|CN146103 WOUND1_37_D01.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_37_D01_A002 5', mRNA sequence
Length = 742
Score = 227 bits (490), Expect = 2e-058
Identities = 99/113 (87%), Positives = 105/113 (92%)
Frame = +3 / +1
Query: 162 EKLVKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTKTDE 341
+KLVKVLFELARHHAPSTI LDEIDAIIS RGEARSEHEASRRLKTELLIQMDGLTKT++
Sbjct: 403 KKLVKVLFELARHHAPSTICLDEIDAIISHRGEARSEHEASRRLKTELLIQMDGLTKTND 582
Query: 342 LVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDARHAMFEELLPYTPGTMEI 500
LVFVLAATNLPWELDAAMLRRLEKRILVPLPE +AR AMFEELLP T +E+
Sbjct: 583 LVFVLAATNLPWELDAAMLRRLEKRILVPLPEAEARQAMFEELLPATTSKLEV 741
Score = 142 bits (304), Expect = 9e-033
Identities = 68/97 (70%), Positives = 73/97 (75%)
Frame = -2 / -3
Query: 481 VYGRSSSNIACLASGSGNGTXXXXXXXXXXXXSNSHGKFVAARTKTSSSVLVNPSICINS 302
V GRSSSNIACLAS SG+GT SNSHG+FVAA T T S V V PSI I+S
Sbjct: 722 VAGRSSSNIACLASASGSGTRIRFSSLRSIAASNSHGRFVAASTNTKSFVFVKPSI*ISS 543
Query: 301 SVFNRRLASCSLRASPR*LMIASISSRKIVDGA*CLA 191
SVF RRLASCSLRASPR L++ASISSR IVDGA*CLA
Sbjct: 542 SVFKRRLASCSLRASPRWLIMASISSRHIVDGA*CLA 432
>gb|BG933489.1|BG933489 WS1_4_A08.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 409
Score = 215 bits (464), Expect = 8e-055
Identities = 93/109 (85%), Positives = 102/109 (93%)
Frame = +3 / +3
Query: 285 RRLKTELLIQMDGLTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDARHAMFE 464
RRLKTELLIQMDGLTKT++LVFVLAATNLP ELDAAMLRRLEKRILVPLPE +AR AMFE
Sbjct: 3 RRLKTELLIQMDGLTKTNDLVFVLAATNLP*ELDAAMLRRLEKRILVPLPEAEARQAMFE 182
Query: 465 ELLPYTPGTMEIPYDVLVEKTEGYSGSDIRLVCKEAAMQPLRRVMAVLE 611
ELLP T +E+PY++LVEKTEGYSGSDIRLVCKEAAMQPLRR+M+VLE
Sbjct: 183 ELLPATTSKLEVPYNILVEKTEGYSGSDIRLVCKEAAMQPLRRLMSVLE 329
Score = 149 bits (319), Expect = 8e-035
Identities = 78/136 (57%), Positives = 83/136 (61%)
Frame = -2 / -1
Query: 691 LKASSISSVVXXXXXXXXXXXXXSFLPSRTAITRLRGCIAASLHTRRISEPEYPSVFSTR 512
L ASSISS S L SRT + RL GC+AASLHTRRISEPE PSVFST
Sbjct: 409 LNASSISSGFRGPTSGSSSSGTNSSLASRTDMRRLSGCMAASLHTRRISEPE*PSVFSTS 230
Query: 511 TS*GISIVPGVYGRSSSNIACLASGSGNGTXXXXXXXXXXXXSNSHGKFVAARTKTSSSV 332
G S V GRSSSNIACLAS SG+GT SNSHG+FVAA T T S V
Sbjct: 229 MLYGTSNFEVVAGRSSSNIACLASASGSGTRIRFSSLRSIAASNSHGRFVAASTNTKSFV 50
Query: 331 LVNPSICINSSVFNRR 284
V PSI I+SSVF RR
Sbjct: 49 FVKPSI*ISSSVFKRR 2
>gb|BM322407.1|BM322407 PIC1_4_D11.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 605
Score = 118 bits (252), Expect(3) = 9e-049
Identities = 48/81 (59%), Positives = 61/81 (75%)
Frame = +3 / +2
Query: 12 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 191
GLL P GILLFGPPGTGKTMLAKA+A + +F N+S S+I SKW G+ EK V+ LF L
Sbjct: 26 GLLKPCGGILLFGPPGTGKTMLAKAIANDAGASFINVSMSTITSKWFGEDEKNVRALFSL 205
Query: 192 ARHHAPSTIFLDEIDAIISQR 254
A AP+ IF+DE+D+++ QR
Sbjct: 206 AAKVAPTIIFVDEVDSMLGQR 268
Score = 87.7 bits (185), Expect(3) = 9e-049
Identities = 39/88 (44%), Positives = 56/88 (63%)
Frame = +3 / +2
Query: 324 LTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDARHAMFEELLPYTPGTMEIP 503
L+KT E + VLAATN P++LD A++RR E+RI+V LP ++R + LL I
Sbjct: 338 LSKTGERILVLAATNRPFDLDEAIIRRFERRIMVGLPTQESRELILRTLLSKEKIEENID 517
Query: 504 YDVLVEKTEGYSGSDIRLVCKEAAMQPL 587
+ L TEGYSGSD++ +C AA +P+
Sbjct: 518 FKELATMTEGYSGSDLKNLCVTAAYRPV 601
Score = 28.1 bits (55), Expect(3) = 9e-049
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3 / +2
Query: 270 EHEASRRLKTELLIQMDGL 326
EHEA R++K E + DGL
Sbjct: 281 EHEAMRKIKNEFMSHWDGL 337
>gb|BF481081.1|BF481081 FM1_16_B09.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 536
Score = 152 bits (326), Expect(2) = 2e-048
Identities = 56/92 (60%), Positives = 77/92 (83%)
Frame = +3 / +1
Query: 12 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 191
G+ PWKG+L+FGPPGTGKT+LAKAVATEC TTFFN+S++++ SKWRG+SE++V+ LF+L
Sbjct: 52 GIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDL 231
Query: 192 ARHHAPSTIFLDEIDAIISQRGEARSEHEASR 287
AR +APSTIF+DEID++ + RG + + R
Sbjct: 232 ARAYAPSTIFIDEIDSLCTSRGASGEHESSRR 327
Score = 86.8 bits (183), Expect(3) = 4e-025
Identities = 47/83 (56%), Positives = 49/83 (59%)
Frame = -2 / -1
Query: 259 SPR*LMIASISSRKIVDGA*CLAXXXXXXXXXSESPRHLLTIDEAEILKKVVLHSVATAL 80
+PR + SISS KIV GA* LA S SPRHL E LKKVV HSVATA
Sbjct: 299 APRDVHKESISSMKIVLGA*ALARSNKQRTMRSLSPRHLEANVAEETLKKVVPHSVATAF 120
Query: 79 ASIVFPVPGGPNSNMPFQGDNRP 11
A VFPVPGGPN PFQG P
Sbjct: 119 AKRVFPVPGGPNIRTPFQGRRIP 51
Score = 62.0 bits (129), Expect(2) = 2e-048
Identities = 23/40 (57%), Positives = 33/40 (82%)
Frame = +3 / +1
Query: 339 ELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDARHAM 458
++V VLAATN PW++D A+ RRLEKRI +PLP+ ++R A+
Sbjct: 397 KIVMVLAATNFPWDIDEALRRRLEKRIYIPLPDFESRKAL 516
Score = 43.7 bits (89), Expect(3) = 4e-025
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -1 / -3
Query: 452 MSSIRLWQWNKNTLLQPTQHCCIQLPW 372
+S+ ++W+WN N LL+P C I +PW
Sbjct: 510 LSTFKIWKWNINALLKPPPQCLINIPW 430
Score = 23.5 bits (45), Expect(3) = 4e-025
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -2 / -1
Query: 334 VLVNPSICINSSVFNRRLASCS 269
+L PSIC SS F SCS
Sbjct: 371 LLFTPSICTRSSDFTLLDDSCS 306
>gb|BG054290.1|BG054290 OV2_4_F12.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 599
Score = 135 bits (289), Expect = 1e-030
Identities = 71/114 (62%), Positives = 74/114 (64%)
Frame = -2 / -1
Query: 763 T*LP*SWLNFSYLCA*R*ADGLVFLKASSISSVVXXXXXXXXXXXXXSFLPSRTAITRLR 584
T LP*SWLNFS CA R ADGL FL ASSISS S L SRT + RL
Sbjct: 356 TWLP*SWLNFS*RCAWRWADGLXFLNASSISSGFRGPTSGSSSSGTNSSLASRTDMRRLS 177
Query: 583 GCIAASLHTRRISEPEYPSVFSTRTS*GISIVPGVYGRSSSNIACLASGSGNGT 422
GC+AASLHTRRISEPE PSVFST G S V GRSSSNIACLAS S +GT
Sbjct: 176 GCMAASLHTRRISEPE*PSVFSTNMLYGTSNFEVVAGRSSSNIACLASASRSGT 15
Score = 128 bits (275), Expect(2) = 9e-046
Identities = 54/68 (79%), Positives = 61/68 (89%)
Frame = +3 / +1
Query: 408 EKRILVPLPEPDARHAMFEELLPYTPGTMEIPYDVLVEKTEGYSGSDIRLVCKEAAMQPL 587
EKRILVPL E +AR AMFEELLP T +E+PY++LVEKTEGYSGSDIRLVCKEAAMQPL
Sbjct: 1 EKRILVPLLEAEARQAMFEELLPATTSKLEVPYNILVEKTEGYSGSDIRLVCKEAAMQPL 180
Query: 588 RRVMAVLE 611
RR+M+VLE
Sbjct: 181 RRLMSVLE 204
Score = 76.7 bits (161), Expect(2) = 9e-046
Identities = 30/32 (93%), Positives = 30/32 (93%)
Frame = +3 / +1
Query: 669 EDIELALRNTRPSAHLHAHRYEKFNQDYGSHV 764
EDIELALRN RPSAHLHAHRYEKFNQDYGS V
Sbjct: 262 EDIELALRNXRPSAHLHAHRYEKFNQDYGSQV 357
>gb|BG356706.1|BG356706 OV2_26_H07.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 518
Score = 125 bits (267), Expect = 1e-027
Identities = 66/105 (62%), Positives = 68/105 (64%)
Frame = -2 / -2
Query: 763 T*LP*SWLNFSYLCA*R*ADGLVFLKASSISSVVXXXXXXXXXXXXXSFLPSRTAITRLR 584
T LP*SWLNFS CA R ADGLVFL ASSISS S L SRT + RL
Sbjct: 316 TWLP*SWLNFS*RCAWRWADGLVFLNASSISSGFRGPTSGSSSSGTNSSLASRTDMRRLS 137
Query: 583 GCIAASLHTRRISEPEYPSVFSTRTS*GISIVPGVYGRSSSNIAC 449
GC+AASLHTRRISEPE PSVFST G S V GRSSSNIAC
Sbjct: 136 GCMAASLHTRRISEPE*PSVFSTSMLYGTSNFEVVAGRSSSNIAC 2
Score = 105 bits (225), Expect(2) = 1e-039
Identities = 43/53 (81%), Positives = 49/53 (92%)
Frame = +3 / +3
Query: 453 AMFEELLPYTPGTMEIPYDVLVEKTEGYSGSDIRLVCKEAAMQPLRRVMAVLE 611
AMFEELLP T +E+PY++LVEKTEGYSGSDIRLVCKEAAMQPLRR+M+VLE
Sbjct: 6 AMFEELLPATTSKLEVPYNILVEKTEGYSGSDIRLVCKEAAMQPLRRLMSVLE 164
Score = 79.0 bits (166), Expect(2) = 1e-039
Identities = 31/32 (96%), Positives = 31/32 (96%)
Frame = +3 / +3
Query: 669 EDIELALRNTRPSAHLHAHRYEKFNQDYGSHV 764
EDIELALRNTRPSAHLHAHRYEKFNQDYGS V
Sbjct: 222 EDIELALRNTRPSAHLHAHRYEKFNQDYGSQV 317
>gb|BM322502.1|BM322502 PIC1_5_F04.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 613
Score = 118 bits (252), Expect(3) = 2e-037
Identities = 49/83 (59%), Positives = 61/83 (73%)
Frame = +3 / +2
Query: 15 LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELA 194
LL P KGILLFGPPGTGKT+LAKA+ATE F +I+ S++ SKW GD+EKL K LF A
Sbjct: 188 LLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKSLFSFA 367
Query: 195 RHHAPSTIFLDEIDAIISQRGEA 263
AP IF+DE+D+++ RG A
Sbjct: 368 SRLAPVIIFVDEVDSLLGARGGA 436
Score = 48.3 bits (99), Expect(3) = 2e-037
Identities = 19/37 (51%), Positives = 29/37 (78%)
Frame = +3 / +2
Query: 327 TKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPE 437
+K ++ + VL ATN P++LD A++RRL +RILV LP+
Sbjct: 500 SKENQRILVLGATNRPFDLDDAVIRRLPRRILVDLPD 610
Score = 29.0 bits (57), Expect(3) = 2e-037
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3 / +2
Query: 270 EHEASRRLKTELLIQMDGL 326
EHEA+RR++ E + DGL
Sbjct: 440 EHEATRRMRNEFMAAWDGL 496
>gb|CW394606.1|CW394606 fsbb001f082e13k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f082e13, DNA
sequence
Length = 809
Score = 120 bits (256), Expect(3) = 7e-037
Identities = 48/81 (59%), Positives = 62/81 (76%)
Frame = +3 / -2
Query: 12 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 191
GLL P +GILLFGPPGTGKTMLAKA+A + +F N+S S+I SKW G+ EK V+ LF L
Sbjct: 613 GLLKPCRGILLFGPPGTGKTMLAKAIANDAGASFINVSMSTITSKWFGEDEKNVRALFSL 434
Query: 192 ARHHAPSTIFLDEIDAIISQR 254
A AP+ IF+DE+D+++ QR
Sbjct: 433 AAKVAPTIIFVDEVDSMLGQR 371
Score = 45.5 bits (93), Expect(3) = 7e-037
Identities = 18/31 (58%), Positives = 25/31 (80%)
Frame = +3 / -2
Query: 324 LTKTDELVFVLAATNLPWELDAAMLRRLEKR 416
L+KT E + VLAATN P++LD A++RR E+R
Sbjct: 301 LSKTGERILVLAATNRPFDLDEAIIRRFERR 209
Score = 28.1 bits (55), Expect(3) = 7e-037
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3 / -2
Query: 270 EHEASRRLKTELLIQMDGL 326
EHEA R++K E + DGL
Sbjct: 358 EHEAMRKIKNEFMSHWDGL 302
>gb|CW248041.1|CW248041 104_709_11222083_116_35029_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11222083, DNA
sequence
Length = 649
Score = 120 bits (256), Expect(3) = 7e-037
Identities = 48/81 (59%), Positives = 62/81 (76%)
Frame = +3 / -3
Query: 12 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 191
GLL P +GILLFGPPGTGKTMLAKA+A + +F N+S S+I SKW G+ EK V+ LF L
Sbjct: 644 GLLKPCRGILLFGPPGTGKTMLAKAIANDAGASFINVSMSTITSKWFGEDEKNVRALFSL 465
Query: 192 ARHHAPSTIFLDEIDAIISQR 254
A AP+ IF+DE+D+++ QR
Sbjct: 464 AAKVAPTIIFVDEVDSMLGQR 402
Score = 45.5 bits (93), Expect(3) = 7e-037
Identities = 18/31 (58%), Positives = 25/31 (80%)
Frame = +3 / -3
Query: 324 LTKTDELVFVLAATNLPWELDAAMLRRLEKR 416
L+KT E + VLAATN P++LD A++RR E+R
Sbjct: 332 LSKTGERILVLAATNRPFDLDEAIIRRFERR 240
Score = 28.1 bits (55), Expect(3) = 7e-037
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3 / -3
Query: 270 EHEASRRLKTELLIQMDGL 326
EHEA R++K E + DGL
Sbjct: 389 EHEAMRKIKNEFMSHWDGL 333
>gb|CW248042.1|CW248042 104_709_11222083_148_35025_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11222083, DNA
sequence
Length = 637
Score = 120 bits (256), Expect(3) = 7e-037
Identities = 48/81 (59%), Positives = 62/81 (76%)
Frame = +3 / +2
Query: 12 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 191
GLL P +GILLFGPPGTGKTMLAKA+A + +F N+S S+I SKW G+ EK V+ LF L
Sbjct: 143 GLLKPCRGILLFGPPGTGKTMLAKAIANDAGASFINVSMSTITSKWFGEDEKNVRALFSL 322
Query: 192 ARHHAPSTIFLDEIDAIISQR 254
A AP+ IF+DE+D+++ QR
Sbjct: 323 AAKVAPTIIFVDEVDSMLGQR 385
Score = 45.5 bits (93), Expect(3) = 7e-037
Identities = 18/31 (58%), Positives = 25/31 (80%)
Frame = +3 / +2
Query: 324 LTKTDELVFVLAATNLPWELDAAMLRRLEKR 416
L+KT E + VLAATN P++LD A++RR E+R
Sbjct: 455 LSKTGERILVLAATNRPFDLDEAIIRRFERR 547
Score = 28.1 bits (55), Expect(3) = 7e-037
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3 / +2
Query: 270 EHEASRRLKTELLIQMDGL 326
EHEA R++K E + DGL
Sbjct: 398 EHEAMRKIKNEFMSHWDGL 454
>gb|CW278451.1|CW278451 104_752_11406555_116_35679_002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11406555, DNA
sequence
Length = 672
Score = 120 bits (256), Expect(3) = 3e-036
Identities = 48/81 (59%), Positives = 62/81 (76%)
Frame = +3 / +1
Query: 12 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 191
GLL P +GILLFGPPGTGKTMLAKA+A + +F N+S S+I SKW G+ EK V+ LF L
Sbjct: 151 GLLKPCRGILLFGPPGTGKTMLAKAIANDAGASFINVSMSTITSKWFGEDEKNVRALFSL 330
Query: 192 ARHHAPSTIFLDEIDAIISQR 254
A AP+ IF+DE+D+++ QR
Sbjct: 331 AAKVAPTIIFVDEVDSMLGQR 393
Score = 43.2 bits (88), Expect(3) = 3e-036
Identities = 17/30 (56%), Positives = 24/30 (80%)
Frame = +3 / +1
Query: 324 LTKTDELVFVLAATNLPWELDAAMLRRLEK 413
L+KT E + VLAATN P++LD A++RR E+
Sbjct: 463 LSKTGERILVLAATNRPFDLDEAIIRRFER 552
Score = 28.1 bits (55), Expect(3) = 3e-036
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3 / +1
Query: 270 EHEASRRLKTELLIQMDGL 326
EHEA R++K E + DGL
Sbjct: 406 EHEAMRKIKNEFMSHWDGL 462
>gb|BE600718.1|BE600718 PI1_91_G08.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 462
Score = 88.6 bits (187), Expect(4) = 5e-036
Identities = 38/63 (60%), Positives = 45/63 (71%)
Frame = +3 / +1
Query: 66 KTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDAII 245
KTMLAKAVATE F NIS SSI SKW G+ EK VK +F LA APS IF+DE+D ++
Sbjct: 55 KTMLAKAVATEAGANFINISMSSISSKWLGEGEKFVKAVFSLASKIAPSVIFVDEVDGML 234
Query: 246 SQR 254
+R
Sbjct: 235 GRR 243
Score = 53.3 bits (110), Expect(4) = 5e-036
Identities = 23/49 (46%), Positives = 33/49 (67%)
Frame = +3 / +1
Query: 327 TKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDARHAMFEELL 473
TK E V VLAATN P++LD A++RRL +R++V LP+ R + +L
Sbjct: 316 TKEKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDASNRRKILSVIL 462
Score = 34.5 bits (69), Expect(4) = 5e-036
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = +3 / +3
Query: 24 PWKGILLFGPPGTGK 68
P KGILLFGPPGT K
Sbjct: 12 PCKGILLFGPPGTXK 56
Score = 32.2 bits (64), Expect(4) = 5e-036
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3 / +1
Query: 252 RGEARSEHEASRRLKTELLIQMDGL 326
R E EHEA R++K E ++ DGL
Sbjct: 238 RRENPGEHEAMRKMKNEFMVNWDGL 312
>gb|BG463900.1|BG463900 EM1_52_C04.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 501
Score = 122 bits (262), Expect(3) = 2e-035
Identities = 49/84 (58%), Positives = 64/84 (76%)
Frame = +3 / +2
Query: 12 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 191
GLL P +GILLFGPPGTGKTMLAKA+A E + +F N+S S+I SKW G+ EK V+ LF L
Sbjct: 107 GLLKPCRGILLFGPPGTGKTMLAKAIANEAQASFINVSMSTITSKWFGEDEKNVRALFTL 286
Query: 192 ARHHAPSTIFLDEIDAIISQRGEA 263
A +P+ IF+DE+D+++ QR A
Sbjct: 287 AAKVSPTIIFVDEVDSMLGQRNRA 358
Score = 37.7 bits (76), Expect(3) = 2e-035
Identities = 14/27 (51%), Positives = 22/27 (81%)
Frame = +3 / +2
Query: 324 LTKTDELVFVLAATNLPWELDAAMLRR 404
L++ D+ + VLAATN P++LD A++RR
Sbjct: 419 LSRPDQRILVLAATNRPFDLDEAIIRR 499
Score = 28.6 bits (56), Expect(3) = 2e-035
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3 / +2
Query: 270 EHEASRRLKTELLIQMDGL 326
EHEA R++K E + DGL
Sbjct: 362 EHEAMRKIKNEFMTHWDGL 418
>gb|CD462545.1|CD462545 ETH1_38_D03.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_38_D03_A002 3', mRNA sequence
Length = 723
Score = 125 bits (268), Expect(3) = 3e-035
Identities = 51/81 (62%), Positives = 65/81 (80%)
Frame = +3 / +1
Query: 12 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 191
GL P +G+LLFGPPG GKTMLAKAVA+E + TFFN+SASS+ SKW G++EKLV+ LF +
Sbjct: 334 GLRRPARGLLLFGPPGNGKTMLAKAVASESEATFFNVSASSLTSKWVGEAEKLVRTLFMV 513
Query: 192 ARHHAPSTIFLDEIDAIISQR 254
A PS IF+DEID+++S R
Sbjct: 514 AIDRQPSVIFMDEIDSVMSTR 576
Score = 33.6 bits (67), Expect(3) = 3e-035
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = +3 / +1
Query: 267 SEHEASRRLKTELLIQMDGLTKTDE 341
+E+++SRRLK+E LIQ DG++ +
Sbjct: 583 NENDSSRRLKSEFLIQFDGVSSNPD 657
Score = 29.0 bits (57), Expect(3) = 3e-035
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +3 / +1
Query: 336 DELVFVLAATNLPWELDAA 392
D+LV V+ ATN P ELD A
Sbjct: 655 DDLVIVIGATNKPQELDDA 711
>gb|BE359571.1|BE359571 DG1_54_C03.g2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 611
Score = 106 bits (227), Expect = 4e-022
Identities = 56/90 (62%), Positives = 58/90 (64%)
Frame = -2 / -2
Query: 763 T*LP*SWLNFSYLCA*R*ADGLVFLKASSISSVVXXXXXXXXXXXXXSFLPSRTAITRLR 584
T LP*SWLNFS CA R ADGLVFL ASSISS S L SRT + RL
Sbjct: 286 TWLP*SWLNFS*RCAWRWADGLVFLNASSISSGFRGPTSGSSSSGTNSSLASRTDMRRLS 107
Query: 583 GCIAASLHTRRISEPEYPSVFSTRTS*GIS 494
GC+AASLHTRRISEPE PSVFST G S
Sbjct: 106 GCMAASLHTRRISEPE*PSVFSTSMLYGTS 17
Score = 88.6 bits (187), Expect(2) = 2e-034
Identities = 35/44 (79%), Positives = 41/44 (93%)
Frame = +3 / +3
Query: 480 TPGTMEIPYDVLVEKTEGYSGSDIRLVCKEAAMQPLRRVMAVLE 611
T +E+PY++LVEKTEGYSGSDIRLVCKEAAMQPLRR+M+VLE
Sbjct: 3 TTSKLEVPYNILVEKTEGYSGSDIRLVCKEAAMQPLRRLMSVLE 134
Score = 79.0 bits (166), Expect(2) = 2e-034
Identities = 31/32 (96%), Positives = 31/32 (96%)
Frame = +3 / +3
Query: 669 EDIELALRNTRPSAHLHAHRYEKFNQDYGSHV 764
EDIELALRNTRPSAHLHAHRYEKFNQDYGS V
Sbjct: 192 EDIELALRNTRPSAHLHAHRYEKFNQDYGSQV 287
>gb|BG556902.1|BG556902 EM1_40_B02.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 479
Score = 122 bits (262), Expect(3) = 7e-034
Identities = 49/84 (58%), Positives = 64/84 (76%)
Frame = +3 / +2
Query: 12 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 191
GLL P +GILLFGPPGTGKTMLAKA+A E + +F N+S S+I SKW G+ EK V+ LF L
Sbjct: 95 GLLKPCRGILLFGPPGTGKTMLAKAIANEAQASFINVSMSTITSKWFGEDEKNVRALFTL 274
Query: 192 ARHHAPSTIFLDEIDAIISQRGEA 263
A +P+ IF+DE+D+++ QR A
Sbjct: 275 AAKVSPTIIFVDEVDSMLGQRNRA 346
Score = 32.2 bits (64), Expect(3) = 7e-034
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = +3 / +2
Query: 324 LTKTDELVFVLAATNLPWELDAAM 395
L++ D+ + VLAATN P++LD A+
Sbjct: 407 LSRPDQRILVLAATNRPFDLDEAI 478
Score = 28.6 bits (56), Expect(3) = 7e-034
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3 / +2
Query: 270 EHEASRRLKTELLIQMDGL 326
EHEA R++K E + DGL
Sbjct: 350 EHEAMRKIKNEFMTHWDGL 406
>gb|CW101698.1|CW101698 104_469_11004795_148_34410_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11004795, DNA
sequence
Length = 660
Score = 140 bits (301), Expect = 2e-032
Identities = 53/82 (64%), Positives = 71/82 (86%)
Frame = +3 / -2
Query: 12 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 191
G+ P KG+L+FGPP TGKT+LAKAVATEC TTFFN+S++++ SKWRG+SE++V+ LF+L
Sbjct: 434 GIRRPCKGVLMFGPPSTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDL 255
Query: 192 ARHHAPSTIFLDEIDAIISQRG 257
AR APSTIF+DEID++ + RG
Sbjct: 254 ARAKAPSTIFIDEIDSLCTSRG 189
>gb|BE596532.1|BE596532 PI1_57_D04.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 561
Score = 123 bits (263), Expect(2) = 2e-031
Identities = 52/80 (65%), Positives = 60/80 (75%)
Frame = +3 / +1
Query: 15 LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELA 194
L P KGILLFGPPGTGKTMLAKAVATE F NIS SSI SKW G+ EK VK +F LA
Sbjct: 202 LTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLA 381
Query: 195 RHHAPSTIFLDEIDAIISQR 254
APS IF+DE+D+++ +R
Sbjct: 382 SKIAPSVIFIDEVDSMLGRR 441
Score = 34.1 bits (68), Expect(2) = 2e-031
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3 / +1
Query: 252 RGEARSEHEASRRLKTELLIQMDGLTKTDE 341
R E EHEA R++K E ++ DGL D+
Sbjct: 436 RRENPGEHEAMRKMKNEFMVNWDGLRTKDK 525
>gb|BZ412880.1|BZ412880 154b9_14 Subclones from BAC clones mapped to Sorghum bicolor
chromosome 3 Sorghum bicolor genomic clone 154b9, DNA
sequence
Length = 817
Score = 122 bits (262), Expect(2) = 1e-029
Identities = 49/84 (58%), Positives = 64/84 (76%)
Frame = +3 / -1
Query: 12 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 191
GLL P +GILLFGPPGTGKTMLAKA+A E + +F N+S S+I SKW G+ EK V+ LF L
Sbjct: 331 GLLKPCRGILLFGPPGTGKTMLAKAIANEAQASFINVSMSTITSKWFGEDEKNVRALFTL 152
Query: 192 ARHHAPSTIFLDEIDAIISQRGEA 263
A +P+ IF+DE+D+++ QR A
Sbjct: 151 AAKVSPTIIFVDEVDSMLGQRNRA 80
Score = 28.6 bits (56), Expect(2) = 1e-029
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3 / -1
Query: 270 EHEASRRLKTELLIQMDGL 326
EHEA R++K E + DGL
Sbjct: 76 EHEAMRKIKNEFMTHWDGL 20
>gb|BE594288.1|BE594288 WS1_104_E08.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 442
Score = 122 bits (262), Expect(2) = 1e-029
Identities = 49/84 (58%), Positives = 64/84 (76%)
Frame = +3 / +1
Query: 12 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 191
GLL P +GILLFGPPGTGKTMLAKA+A E + +F N+S S+I SKW G+ EK V+ LF L
Sbjct: 121 GLLKPCRGILLFGPPGTGKTMLAKAIANEAQASFINVSMSTITSKWFGEDEKNVRALFTL 300
Query: 192 ARHHAPSTIFLDEIDAIISQRGEA 263
A +P+ IF+DE+D+++ QR A
Sbjct: 301 AAKVSPTIIFVDEVDSMLGQRNRA 372
Score = 28.6 bits (56), Expect(2) = 1e-029
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3 / +1
Query: 270 EHEASRRLKTELLIQMDGL 326
EHEA R++K E + DGL
Sbjct: 376 EHEAMRKIKNEFMTHWDGL 432
>gb|CF759927.1|CF759927 DSAF1_53_B04.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_53_B04_A011 5', mRNA sequence
Length = 511
Score = 61.1 bits (127), Expect(4) = 2e-029
Identities = 26/46 (56%), Positives = 33/46 (71%)
Frame = +3 / +3
Query: 336 DELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDARHAMFEELL 473
D+LV V+ ATN P ELD A+LRRL KRI VPLP+P+ R + + L
Sbjct: 180 DDLVIVIGATNKPQELDDAVLRRLVKRIYVPLPDPNVRKLLLKNQL 317
Score = 47.8 bits (98), Expect(4) = 2e-029
Identities = 17/31 (54%), Positives = 25/31 (80%)
Frame = +3 / +3
Query: 504 YDVLVEKTEGYSGSDIRLVCKEAAMQPLRRV 596
++ L +TEGYSGSD+R +C+EAAM P+R +
Sbjct: 351 FERLAVETEGYSGSDLRALCEEAAMMPIREL 443
Score = 43.2 bits (88), Expect(4) = 2e-029
Identities = 17/33 (51%), Positives = 25/33 (75%)
Frame = +3 / +3
Query: 156 DSEKLVKVLFELARHHAPSTIFLDEIDAIISQR 254
++EKLV+ LF +A PS IF+DEID+++S R
Sbjct: 3 EAEKLVRTLFMVAIDRQPSVIFMDEIDSVMSTR 101
Score = 33.6 bits (67), Expect(4) = 2e-029
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = +3 / +3
Query: 267 SEHEASRRLKTELLIQMDGLTKTDE 341
+E+++SRRLK+E LIQ DG++ +
Sbjct: 108 NENDSSRRLKSEFLIQFDGVSSNPD 182
>gb|BG649620.1|BG649620 RHIZ2_81_D06.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 484
Score = 61.1 bits (127), Expect(4) = 6e-029
Identities = 26/46 (56%), Positives = 33/46 (71%)
Frame = +3 / +2
Query: 336 DELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDARHAMFEELL 473
D+LV V+ ATN P ELD A+LRRL KRI VPLP+P+ R + + L
Sbjct: 173 DDLVIVIGATNKPQELDDAVLRRLVKRIYVPLPDPNVRKLLLKNQL 310
Score = 47.8 bits (98), Expect(4) = 6e-029
Identities = 17/31 (54%), Positives = 25/31 (80%)
Frame = +3 / +2
Query: 504 YDVLVEKTEGYSGSDIRLVCKEAAMQPLRRV 596
++ L +TEGYSGSD+R +C+EAAM P+R +
Sbjct: 344 FERLAVETEGYSGSDLRALCEEAAMMPIREL 436
Score = 41.8 bits (85), Expect(4) = 6e-029
Identities = 17/31 (54%), Positives = 23/31 (74%)
Frame = +3 / +2
Query: 162 EKLVKVLFELARHHAPSTIFLDEIDAIISQR 254
EKLV+ LF +A PS IF+DEID+++S R
Sbjct: 2 EKLVRTLFMVAIDRQPSVIFMDEIDSVMSTR 94
Score = 33.6 bits (67), Expect(4) = 6e-029
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = +3 / +2
Query: 267 SEHEASRRLKTELLIQMDGLTKTDE 341
+E+++SRRLK+E LIQ DG++ +
Sbjct: 101 NENDSSRRLKSEFLIQFDGVSSNPD 175
>gb|CW310508.1|CW310508 104_799_11469751_116_37434_020 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11469751, DNA
sequence
Length = 678
Score = 102 bits (218), Expect(2) = 6e-029
Identities = 37/80 (46%), Positives = 56/80 (70%)
Frame = +3 / -2
Query: 18 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELAR 197
+SP +G+L +GPPG GKT+LAKA+A EC+ F ++ +++ W G+SE V+ +F+ AR
Sbjct: 602 MSPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKAR 423
Query: 198 HHAPSTIFLDEIDAIISQRG 257
AP +F DE+D+I QRG
Sbjct: 422 QSAPCVLFFDELDSIAMQRG 363
Score = 48.7 bits (100), Expect(2) = 6e-029
Identities = 20/63 (31%), Positives = 34/63 (53%)
Frame = +3 / -2
Query: 402 RLEKRILVPLPEPDARHAMFEELLPYTPGTMEIPYDVLVEKTEGYSGSDIRLVCKEAAMQ 581
RL++ I +PLP+ +R +F+ L +P + L T G+SG+DI +C+ A
Sbjct: 212 RLDQLIYIPLPDEASRQQIFKACLRKSPVAKNVDLGALARFTAGFSGADITEICQRACKY 33
Query: 582 PLR 590
+R
Sbjct: 32 AIR 24
>gb|CW081302.1|CW081302 104_418_10941386_114_32286_011 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10941386, DNA
sequence
Length = 684
Score = 100 bits (213), Expect(2) = 8e-029
Identities = 36/78 (46%), Positives = 55/78 (70%)
Frame = +3 / +2
Query: 18 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELAR 197
+SP KG+L +GPPG GKT+LAKA+A EC+ F ++ +++ W G+SE V+ +F+ AR
Sbjct: 23 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKAR 202
Query: 198 HHAPSTIFLDEIDAIISQ 251
AP +F DE+D+I +Q
Sbjct: 203 QSAPCVLFFDELDSIATQ 256
Score = 50.6 bits (104), Expect(2) = 8e-029
Identities = 19/57 (33%), Positives = 36/57 (63%)
Frame = +3 / +2
Query: 402 RLEKRILVPLPEPDARHAMFEELLPYTPGTMEIPYDVLVEKTEGYSGSDIRLVCKEA 572
RL++ I +PLP+ +R +F+ L +P ++ + L + T+G+SG+DI +C+ A
Sbjct: 497 RLDQLIYIPLPDEQSRLQIFKACLRKSPVAKDVDLNALAKYTQGFSGADITEICQRA 667
>gb|CW188072.1|CW188072 104_607_11172825_116_36721_035 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11172825, DNA
sequence
Length = 646
Score = 120 bits (256), Expect(2) = 1e-028
Identities = 48/81 (59%), Positives = 62/81 (76%)
Frame = +3 / +3
Query: 12 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 191
GLL P +GILLFGPPGTGKTMLAKA+A + +F N+S S+I SKW G+ EK V+ LF L
Sbjct: 306 GLLKPCRGILLFGPPGTGKTMLAKAIANDAGASFINVSMSTITSKWFGEDEKNVRALFSL 485
Query: 192 ARHHAPSTIFLDEIDAIISQR 254
A AP+ IF+DE+D+++ QR
Sbjct: 486 AAKVAPTIIFVDEVDSMLGQR 548
Score = 28.1 bits (55), Expect(2) = 1e-028
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3 / +3
Query: 270 EHEASRRLKTELLIQMDGL 326
EHEA R++K E + DGL
Sbjct: 561 EHEAMRKIKNEFMSHWDGL 617
>gb|CF483381.1|CF483381 POL1_21_H02.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_21_H02_A002 5', mRNA sequence
Length = 730
Score = 95.0 bits (201), Expect(2) = 1e-027
Identities = 34/75 (45%), Positives = 52/75 (69%)
Frame = +3 / +1
Query: 39 LLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPSTI 218
L +GPPG GKT+LAKA+A EC+ F ++ +++ W G+SE V+ +F+ AR AP +
Sbjct: 1 LFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVL 180
Query: 219 FLDEIDAIISQRGEA 263
F DE+D+I +QRG +
Sbjct: 181 FFDELDSIATQRGSS 225
Score = 52.4 bits (108), Expect(2) = 1e-027
Identities = 20/63 (31%), Positives = 38/63 (60%)
Frame = +3 / +1
Query: 402 RLEKRILVPLPEPDARHAMFEELLPYTPGTMEIPYDVLVEKTEGYSGSDIRLVCKEAAMQ 581
RL++ I +PLP+ +R +F+ L +P ++ + L + T+G+SG+DI +C+ A
Sbjct: 370 RLDQLIYIPLPDEQSRLQIFKACLRKSPVAKDVDLNALAKYTQGFSGADITEICQRACKY 549
Query: 582 PLR 590
+R
Sbjct: 550 AIR 558
>gb|CW127527.1|CW127527 104_508_11113488_116_34743_086 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11113488, DNA
sequence
Length = 519
Score = 124 bits (266), Expect = 2e-027
Identities = 55/58 (94%), Positives = 56/58 (96%)
Frame = +3 / -1
Query: 153 GDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 326
GDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ+ L
Sbjct: 438 GDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQVVSL 265
Score = 110 bits (235), Expect = 3e-023
Identities = 51/59 (86%), Positives = 54/59 (91%)
Frame = +2 / -3
Query: 152 R*LGETSESVIRTCKASCTIYYFP**D*CYH*STW*SS**T*S*PAIEN*AINTDGWVD 328
R*LGETSES+IR CKASCTIY+FP**D*CYH*STW*SS**T*S*PAIEN AINT + D
Sbjct: 439 R*LGETSESIIRACKASCTIYHFP**D*CYH*STW*SS**T*S*PAIENGAINTGSFFD 263
Score = 108 bits (230), Expect = 1e-022
Identities = 49/53 (92%), Positives = 49/53 (92%)
Frame = -3 / +3
Query: 312 VLIAQFSIAG*LHVHYELHHVD***HQSHQGK**MVHDALQVRITLSLVSPSH 154
VLIA FSIAG*LHVHYELHHVD***HQSHQGK *MVHDALQ RI LSLVSPSH
Sbjct: 279 VLIAPFSIAG*LHVHYELHHVD***HQSHQGKW*MVHDALQARIILSLVSPSH 437
>gb|CW127528.1|CW127528 104_508_11113488_148_34739_086 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11113488, DNA
sequence
Length = 657
Score = 124 bits (266), Expect = 2e-027
Identities = 55/58 (94%), Positives = 56/58 (96%)
Frame = +3 / +3
Query: 153 GDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 326
GDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ+ L
Sbjct: 321 GDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQVVSL 494
Score = 108 bits (230), Expect = 1e-022
Identities = 50/59 (84%), Positives = 53/59 (89%)
Frame = +2 / +2
Query: 152 R*LGETSESVIRTCKASCTIYYFP**D*CYH*STW*SS**T*S*PAIEN*AINTDGWVD 328
R*LGETSES+IR CKASCTIY+FP**D*CYH*STW*SS* T*S*PAIEN AINT + D
Sbjct: 320 R*LGETSESIIRACKASCTIYHFP**D*CYH*STW*SS*RT*S*PAIENGAINTGSFFD 496
Score = 104 bits (222), Expect = 2e-021
Identities = 48/53 (90%), Positives = 48/53 (90%)
Frame = -3 / -1
Query: 312 VLIAQFSIAG*LHVHYELHHVD***HQSHQGK**MVHDALQVRITLSLVSPSH 154
VLIA FSIAG*LHV YELHHVD***HQSHQGK *MVHDALQ RI LSLVSPSH
Sbjct: 480 VLIAPFSIAG*LHVRYELHHVD***HQSHQGKW*MVHDALQARIILSLVSPSH 322
>gb|CF759926.1|CF759926 DSAF1_53_B03.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_53_B03_A011 5', mRNA sequence
Length = 427
Score = 61.1 bits (127), Expect(4) = 2e-027
Identities = 26/46 (56%), Positives = 33/46 (71%)
Frame = +3 / +3
Query: 336 DELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDARHAMFEELL 473
D+LV V+ ATN P ELD A+LRRL KRI VPLP+P+ R + + L
Sbjct: 180 DDLVIVIGATNKPQELDDAVLRRLVKRIYVPLPDPNVRKLLLKNQL 317
Score = 43.2 bits (88), Expect(4) = 2e-027
Identities = 17/33 (51%), Positives = 25/33 (75%)
Frame = +3 / +3
Query: 156 DSEKLVKVLFELARHHAPSTIFLDEIDAIISQR 254
++EKLV+ LF +A PS IF+DEID+++S R
Sbjct: 3 EAEKLVRTLFMVAIDRQPSVIFMDEIDSVMSTR 101
Score = 40.9 bits (83), Expect(4) = 2e-027
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +3 / +3
Query: 504 YDVLVEKTEGYSGSDIRLVCKEAAM 578
++ L +TEGYSGSD+R +C+EAAM
Sbjct: 351 FERLAVETEGYSGSDLRALCEEAAM 425
Score = 33.6 bits (67), Expect(4) = 2e-027
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = +3 / +3
Query: 267 SEHEASRRLKTELLIQMDGLTKTDE 341
+E+++SRRLK+E LIQ DG++ +
Sbjct: 108 NENDSSRRLKSEFLIQFDGVSSNPD 182
>gb|CW175964.1|CW175964 104_588_11158234_148_36576_035 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11158234, DNA
sequence
Length = 719
Score = 79.0 bits (166), Expect(2) = 2e-026
Identities = 31/32 (96%), Positives = 31/32 (96%)
Frame = +3 / +2
Query: 669 EDIELALRNTRPSAHLHAHRYEKFNQDYGSHV 764
EDIELALRNTRPSAHLHAHRYEKFNQDYGS V
Sbjct: 302 EDIELALRNTRPSAHLHAHRYEKFNQDYGSQV 397
Score = 63.8 bits (133), Expect(2) = 2e-026
Identities = 26/28 (92%), Positives = 28/28 (100%)
Frame = +3 / +2
Query: 528 EGYSGSDIRLVCKEAAMQPLRRVMAVLE 611
EGYSGSDIRLVCKEAAMQPLRR+M+VLE
Sbjct: 2 EGYSGSDIRLVCKEAAMQPLRRLMSVLE 85
>gb|CW266594.1|CW266594 104_736_11232514_116_35284_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11232514, DNA
sequence
Length = 655
Score = 120 bits (256), Expect = 4e-026
Identities = 48/81 (59%), Positives = 62/81 (76%)
Frame = +3 / -1
Query: 12 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 191
GLL P +GILLFGPPGTGKTMLAKA+A + +F N+S S+I SKW G+ EK V+ LF L
Sbjct: 271 GLLKPCRGILLFGPPGTGKTMLAKAIANDAGASFINVSMSTITSKWFGEDEKNVRALFSL 92
Query: 192 ARHHAPSTIFLDEIDAIISQR 254
A AP+ IF+DE+D+++ QR
Sbjct: 91 AAKVAPTIIFVDEVDSMLGQR 29
>gb|BI211900.1|BI211900 IP1_62_G07.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 518
Score = 120 bits (256), Expect = 4e-026
Identities = 52/83 (62%), Positives = 60/83 (72%)
Frame = +3 / +3
Query: 6 RPGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLF 185
R L+ P KGILLFGPPGTGKTMLAKAVATE F NIS SSI S W G+ EK VK +F
Sbjct: 117 RGQLMKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSISS*WLGEGEKFVKAVF 296
Query: 186 ELARHHAPSTIFLDEIDAIISQR 254
LA APS IF+DE+D ++ +R
Sbjct: 297 SLASKIAPSVIFVDEVDGMLGRR 365
>gb|AW678491.1|AW678491 WS1_16_C02.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 561
Score = 119 bits (255), Expect = 5e-026
Identities = 51/76 (67%), Positives = 57/76 (75%)
Frame = +3 / +2
Query: 15 LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELA 194
L P KGILLFGPPGTGKTMLAKAVATE F NIS SSI SKW G+ EK VK +F LA
Sbjct: 332 LTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLA 511
Query: 195 RHHAPSTIFLDEIDAI 242
APS IF+DE+D++
Sbjct: 512 SKIAPSVIFIDEVDSM 559
>gb|CW112697.1|CW112697 104_486_11105030_148_34544_053 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11105030, DNA
sequence
Length = 645
Score = 119 bits (254), Expect = 7e-026
Identities = 45/68 (66%), Positives = 59/68 (86%)
Frame = +3 / -2
Query: 12 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 191
G+ P KG+L+FGPP TGKT+LAKAVATEC TTFFN+S++++ SKWRG+SE++V+ LF+L
Sbjct: 206 GIRRPCKGVLMFGPPSTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDL 27
Query: 192 ARHHAPST 215
AR APST
Sbjct: 26 ARAKAPST 3
>gb|CW222795.1|CW222795 104_658_11202566_116_37184_057 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11202566, DNA
sequence
Length = 680
Score = 106 bits (226), Expect(2) = 8e-026
Identities = 40/82 (48%), Positives = 58/82 (70%)
Frame = +3 / +1
Query: 18 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELAR 197
+SP +G+L +GPPG GKTMLAKA+A ECK F ++ +++ W G+SE V+ LF+ AR
Sbjct: 217 MSPSRGVLFYGPPGCGKTMLAKAIAKECKANFISVKGPELLTMWYGESESNVRDLFDKAR 396
Query: 198 HHAPSTIFLDEIDAIISQRGEA 263
APS +F DE+D+I +RG +
Sbjct: 397 SAAPSILFFDELDSIAVKRGNS 462
Score = 32.2 bits (64), Expect(2) = 8e-026
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +3 / +1
Query: 345 VFVLAATNLPWELDAAMLRRLEKRILVPLPEPD 443
VFV+ ATN P +D AMLR L+ +P PD
Sbjct: 544 VFVIGATNRPDIIDPAMLRPGRLDQLIYIPLPD 642
>gb|CF481381.1|CF481381 POL1_71_D07.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_71_D07_A002 5', mRNA sequence
Length = 609
Score = 105 bits (225), Expect(2) = 4e-025
Identities = 38/82 (46%), Positives = 58/82 (70%)
Frame = +3 / +3
Query: 18 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELAR 197
+SP KG+L +GPPG GKT+LAKA+A EC+ F ++ +++ W G+SE V+ +F+ AR
Sbjct: 102 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKAR 281
Query: 198 HHAPSTIFLDEIDAIISQRGEA 263
AP +F DE+D+I +QRG +
Sbjct: 282 QSAPCVLFFDELDSIATQRGSS 347
Score = 30.4 bits (60), Expect(2) = 4e-025
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3 / +3
Query: 345 VFVLAATNLPWELDAAMLRRLEKRILVPLPEPD 443
VF++ ATN P +D A+LR L+ +P PD
Sbjct: 429 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPD 527
>gb|CN137781.1|CN137781 OX1_59_C07.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_59_C07_A002 5', mRNA sequence
Length = 781
Score = 105 bits (225), Expect(2) = 5e-025
Identities = 38/82 (46%), Positives = 58/82 (70%)
Frame = +3 / +3
Query: 18 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELAR 197
+SP KG+L +GPPG GKT+LAKA+A EC+ F ++ +++ W G+SE V+ +F+ AR
Sbjct: 276 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKAR 455
Query: 198 HHAPSTIFLDEIDAIISQRGEA 263
AP +F DE+D+I +QRG +
Sbjct: 456 QSAPCVLFFDELDSIATQRGSS 521
Score = 29.9 bits (59), Expect(2) = 5e-025
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3 / +3
Query: 345 VFVLAATNLPWELDAAMLRRLEKRILVPLPEPD 443
VF++ ATN P +D A+LR L+ +P PD
Sbjct: 603 VFIIGATNRPDIVDPALLRPGRLDQLIYIPLPD 701
>gb|CW298073.1|CW298073 104_780_11462383_116_35648_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11462383, DNA
sequence
Length = 681
Score = 102 bits (218), Expect(2) = 3e-024
Identities = 37/80 (46%), Positives = 56/80 (70%)
Frame = +3 / -1
Query: 18 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELAR 197
+SP +G+L +GPPG GKT+LAKA+A EC+ F ++ +++ W G+SE V+ +F+ AR
Sbjct: 522 MSPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKAR 343
Query: 198 HHAPSTIFLDEIDAIISQRG 257
AP +F DE+D+I QRG
Sbjct: 342 QSAPCVLFFDELDSIAMQRG 283
Score = 30.4 bits (60), Expect(2) = 3e-024
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3 / -1
Query: 345 VFVLAATNLPWELDAAMLRRLEKRILVPLPEPD 443
VF++ ATN P +D A+LR L+ +P PD
Sbjct: 195 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPD 97
>gb|CW310509.1|CW310509 104_799_11469751_148_37433_020 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11469751, DNA
sequence
Length = 676
Score = 102 bits (218), Expect(2) = 3e-024
Identities = 37/80 (46%), Positives = 56/80 (70%)
Frame = +3 / +2
Query: 18 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELAR 197
+SP +G+L +GPPG GKT+LAKA+A EC+ F ++ +++ W G+SE V+ +F+ AR
Sbjct: 215 MSPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKAR 394
Query: 198 HHAPSTIFLDEIDAIISQRG 257
AP +F DE+D+I QRG
Sbjct: 395 QSAPCVLFFDELDSIAMQRG 454
Score = 30.4 bits (60), Expect(2) = 3e-024
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3 / +2
Query: 345 VFVLAATNLPWELDAAMLRRLEKRILVPLPEPD 443
VF++ ATN P +D A+LR L+ +P PD
Sbjct: 542 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPD 640
>gb|CW040642.1|CW040642 104_274_10506238_116_30480 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10506238, DNA
sequence
Length = 672
Score = 94.5 bits (200), Expect(2) = 6e-023
Identities = 41/83 (49%), Positives = 57/83 (68%)
Frame = +3 / +3
Query: 30 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAP 209
KGILL+GPPG+GKT++A+AVA E FF I+ I+SK G+SE ++ F+ A +AP
Sbjct: 3 KGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFQEAEKNAP 182
Query: 210 STIFLDEIDAIISQRGEARSEHE 278
S IF+DEID+I +R + E E
Sbjct: 183 SIIFIDEIDSIAPKREKTHGEVE 251
Score = 36.8 bits (74), Expect(2) = 6e-023
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = +3 / +3
Query: 495 EIPYDVLVEKTEGYSGSDIRLVCKEAAMQPLRRVMAVLE 611
++ + + + T GY G+D+ +C EAA+Q +R M V++
Sbjct: 465 DVNLEAVSKDTHGYVGADLAALCTEAALQCIREKMDVID 581
>gb|CW040641.1|CW040641 104_274_10506238_116_30432 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10506238, DNA
sequence
Length = 724
Score = 94.5 bits (200), Expect(2) = 6e-023
Identities = 41/83 (49%), Positives = 57/83 (68%)
Frame = +3 / +3
Query: 30 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAP 209
KGILL+GPPG+GKT++A+AVA E FF I+ I+SK G+SE ++ F+ A +AP
Sbjct: 3 KGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFQEAEKNAP 182
Query: 210 STIFLDEIDAIISQRGEARSEHE 278
S IF+DEID+I +R + E E
Sbjct: 183 SIIFIDEIDSIAPKREKTHGEVE 251
Score = 36.8 bits (74), Expect(2) = 6e-023
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = +3 / +3
Query: 495 EIPYDVLVEKTEGYSGSDIRLVCKEAAMQPLRRVMAVLE 611
++ + + + T GY G+D+ +C EAA+Q +R M V++
Sbjct: 465 DVNLEAVSKDTHGYVGADLAALCTEAALQCIREKMDVID 581
>gb|CD220070.1|CD220070 CCC1_60_A02.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_60_A02_A007 5', mRNA sequence
Length = 640
Score = 108 bits (230), Expect = 1e-022
Identities = 44/72 (61%), Positives = 55/72 (76%)
Frame = +3 / +2
Query: 12 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 191
GLL P +GILLFGPPGTGKTMLAKA+A E + +F N+S S+I SKW G+ EK V+ LF L
Sbjct: 425 GLLKPCRGILLFGPPGTGKTMLAKAIANEAQASFINVSMSTITSKWFGEDEKNVRALFTL 604
Query: 192 ARHHAPSTIFLD 227
A +P+ IF+D
Sbjct: 605 AAKVSPTIIFVD 640
>gb|BG356265.1|BG356265 EM1_23_D11.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 577
Score = 88.6 bits (187), Expect(3) = 3e-022
Identities = 40/76 (52%), Positives = 50/76 (65%)
Frame = +3 / +2
Query: 30 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAP 209
KG LL GPPGTGKT+LA+AVA E FF+ +AS V + G V+ LFE A+ AP
Sbjct: 11 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKAKAP 190
Query: 210 STIFLDEIDAIISQRG 257
+F+DEIDA+ QRG
Sbjct: 191 CIVFIDEIDAVGRQRG 238
Score = 28.6 bits (56), Expect(3) = 3e-022
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +3 / +2
Query: 345 VFVLAATNLPWELDAAMLR 401
V VLAATN P LD+A+LR
Sbjct: 326 VIVLAATNRPDVLDSALLR 382
Score = 27.2 bits (53), Expect(3) = 3e-022
Identities = 8/32 (25%), Positives = 21/32 (65%)
Frame = +3 / +2
Query: 495 EIPYDVLVEKTEGYSGSDIRLVCKEAAMQPLR 590
++ ++ + +T G++G+D++ + EAA+ R
Sbjct: 482 DVDFEKIARRTPGFTGADLQNLMNEAAILAAR 577
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,106,837,480
Number of Sequences: 832831
Number of extensions: 16017013
Number of successful extensions: 82678
Number of sequences better than 1.0e-020: 63
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 28871724726
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)