TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3064721.2.1
(689 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN149194.1|CN149194 WOUND1_61_F10.b1_A002 Wounded leaves... 105 7e-045
gb|CF487333.1|CF487333 POL1_43_D11.b1_A002 Pollen Sorghum b... 104 5e-044
gb|CF070980.1|CF070980 FE1_14_F12.g1_A002 Iron-deficient se... 100 1e-042
gb|BF587532.1|BF587532 FM1_37_E11.g1_A003 Floral-Induced Me... 92 2e-040
gb|BM329584.1|BM329584 PIC1_40_E09.g1_A002 Pathogen-infecte... 78 2e-040
gb|CW144377.1|CW144377 104_536_11137911_148_34962_056 Sorgh... 67 4e-039
gb|CN140420.1|CN140420 OX1_36_B10.b1_A002 Oxidatively-stres... 105 1e-036
gb|BG101797.1|BG101797 RHIZ2_22_E09.g1_A003 Rhizome2 (RHIZ2... 79 3e-036
gb|CN127460.1|CN127460 RHOH1_23_D06.b1_A002 Acid- and alkal... 100 6e-036
gb|CX612893.1|CX612893 GABR1_5_C04.b1_A002 GA- or brassinol... 100 6e-036
gb|CD234655.1|CD234655 SS1_17_C07.b1_A012 Salt-stressed see... 90 8e-033
gb|BI139893.1|BI139893 IP1_47_A12.b1_A002 Immature pannicle... 61 3e-028
gb|BM331533.1|BM331533 PIC1_72_D10.g1_A002 Pathogen-infecte... 61 5e-027
gb|CW285991.1|CW285991 104_763_11410641_116_35511_039 Sorgh... 67 1e-026
>gb|CN149194.1|CN149194 WOUND1_61_F10.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_61_F10_A002 3', mRNA sequence
Length = 807
Score = 105 bits (225), Expect(3) = 7e-045
Identities = 37/58 (63%), Positives = 44/58 (75%)
Frame = +2 / +2
Query: 2 HACGWAYGMNMFDLSGWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRIRSL 175
+ACGWAYGMN FDL WR++ TE YH WQ NENR LWKLGTLP GL+TF++ + L
Sbjct: 179 NACGWAYGMNFFDLDSWRREKCTEQYHYWQNQNENRTLWKLGTLPPGLITFYSTTKPL 352
Score = 72.5 bits (152), Expect(2) = 1e-021
Identities = 30/50 (60%), Positives = 33/50 (66%)
Frame = -3 / -1
Query: 153 KVTRPAGRVPSFHNSLFSFNFCQVW*TSVMFCFLHPDKSNMFMPYAQPQA 4
KV +P G VPSFHN FSF FCQ W SV F L +S F+PYAQPQA
Sbjct: 330 KVIKPGGSVPSFHNVRFSF*FCQ*WYCSVHFSLLQESRSKKFIPYAQPQA 181
Score = 69.8 bits (146), Expect(3) = 7e-045
Identities = 24/37 (64%), Positives = 32/37 (86%)
Frame = +1 / +2
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
T PL+RSWH LGLGYNP+++ ++IR A V+HFNGN+K
Sbjct: 341 TKPLERSWHVLGLGYNPSISMEEIRNAAVVHFNGNMK 451
Score = 51.5 bits (106), Expect(2) = 1e-021
Identities = 24/49 (48%), Positives = 27/49 (55%)
Frame = -1 / -1
Query: 311 CGIWAIQSQARSFKFPLKWMTVARLISFSLTFGLYPSPS*CHERSRGNV 165
C W I ++ F PLK T A LIS L GLYPSP C + SRG V
Sbjct: 486 CLNWFIPMSSQGFMLPLKCTTAAFLISSMLMLGLYPSPRTCQDLSRGFV 340
Score = 44.6 bits (91), Expect(3) = 7e-045
Identities = 12/31 (38%), Positives = 23/31 (74%)
Frame = +2 / +2
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECNINP 373
WL+IG+ ++R W+ +V+YD ++++CN P
Sbjct: 455 WLDIGMNQFRHLWTKYVDYDDSYIRQCNFAP 547
>gb|CF487333.1|CF487333 POL1_43_D11.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_43_D11_A002 3', mRNA sequence
Length = 661
Score = 104 bits (222), Expect(3) = 5e-044
Identities = 36/52 (69%), Positives = 45/52 (86%)
Frame = +2 / +2
Query: 2 HACGWAYGMNMFDLSGWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFW 157
+ACGWAYGMN+FDL W+K++IT +YH WQ LNE+R LWKLGTLP GL+TF+
Sbjct: 41 NACGWAYGMNIFDLREWKKKDITGIYHKWQNLNEDRALWKLGTLPPGLLTFY 196
Score = 66.6 bits (139), Expect(3) = 5e-044
Identities = 22/37 (59%), Positives = 30/37 (81%)
Frame = +1 / +2
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
T PLD+SWH LGLGYNP+++ +I A V+H+NGN+K
Sbjct: 203 THPLDKSWHVLGLGYNPSIDRSEIDSAAVVHYNGNMK 313
Score = 46.4 bits (95), Expect(3) = 5e-044
Identities = 12/30 (40%), Positives = 22/30 (73%)
Frame = +2 / +2
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECNIN 370
WLE+ + KYR YW+ ++ YD +++ CN++
Sbjct: 317 WLELAMTKYRPYWTKYIKYDHPYIRGCNLS 406
>gb|CF070980.1|CF070980 FE1_14_F12.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_14_F12_A002 5', mRNA sequence
Length = 692
Score = 100 bits (212), Expect(3) = 1e-042
Identities = 36/58 (62%), Positives = 43/58 (74%)
Frame = +2 / -1
Query: 2 HACGWAYGMNMFDLSGWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRIRSL 175
+ACG AYGMN FDL WR++ TE YH WQ NENR LWKLGTLP GL+TF++ + L
Sbjct: 671 NACGGAYGMNFFDLDSWRREKCTEQYHYWQNQNENRTLWKLGTLPPGLITFYSTTKPL 498
Score = 68.4 bits (143), Expect(3) = 1e-042
Identities = 23/37 (62%), Positives = 32/37 (86%)
Frame = +1 / -1
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
T PL++SWH LGLGYNP+++ ++IR A V+HFNGN+K
Sbjct: 509 TKPLEKSWHVLGLGYNPSISMEEIRNAAVVHFNGNMK 399
Score = 44.6 bits (91), Expect(3) = 1e-042
Identities = 12/31 (38%), Positives = 23/31 (74%)
Frame = +2 / -1
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECNINP 373
WL+IG+ ++R W+ +V+YD ++++CN P
Sbjct: 395 WLDIGMNQFRHLWTKYVDYDDSYIRQCNFAP 303
>gb|BF587532.1|BF587532 FM1_37_E11.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 632
Score = 92.3 bits (195), Expect(3) = 2e-040
Identities = 33/53 (62%), Positives = 39/53 (73%)
Frame = +2 / +1
Query: 17 AYGMNMFDLSGWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRIRSL 175
AYGMN FDL WR++ TE YH WQ NENR LWKLGTLP GL+TF++ + L
Sbjct: 1 AYGMNFFDLDSWRREKCTEQYHYWQNQNENRTLWKLGTLPXGLITFYSTTKPL 159
Score = 68.4 bits (143), Expect(3) = 2e-040
Identities = 23/37 (62%), Positives = 32/37 (86%)
Frame = +1 / +1
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
T PL++SWH LGLGYNP+++ ++IR A V+HFNGN+K
Sbjct: 148 TKPLEKSWHVLGLGYNPSISMEEIRNAAVVHFNGNMK 258
Score = 44.6 bits (91), Expect(3) = 2e-040
Identities = 12/31 (38%), Positives = 23/31 (74%)
Frame = +2 / +1
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECNINP 373
WL+IG+ ++R W+ +V+YD ++++CN P
Sbjct: 262 WLDIGMNQFRHLWTKYVDYDDSYIRQCNFAP 354
>gb|BM329584.1|BM329584 PIC1_40_E09.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 628
Score = 78.0 bits (164), Expect(3) = 2e-040
Identities = 28/37 (75%), Positives = 32/37 (86%)
Frame = +1 / +3
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
TFPL RSWH LGLGYNP+VN +DI RA VIH+NGN+K
Sbjct: 78 TFPLSRSWHVLGLGYNPHVNSRDIERAAVIHYNGNMK 188
Score = 70.7 bits (148), Expect(3) = 2e-040
Identities = 25/32 (78%), Positives = 29/32 (90%)
Frame = +2 / +3
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECNINP* 376
WLEIGLPKYR YWS +++YDQ FL+ECNINP*
Sbjct: 192 WLEIGLPKYRSYWSKYLDYDQSFLRECNINP* 287
Score = 56.5 bits (117), Expect(3) = 2e-040
Identities = 20/25 (80%), Positives = 23/25 (92%)
Frame = +2 / +3
Query: 89 QKLNENRLLWKLGTLPAGLVTFWNR 163
QKLNE+R LWKLGTLP GL+TFWN+
Sbjct: 3 QKLNEDRSLWKLGTLPPGLITFWNK 77
>gb|CW144377.1|CW144377 104_536_11137911_148_34962_056 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11137911, DNA
sequence
Length = 622
Score = 66.6 bits (139), Expect(4) = 4e-039
Identities = 22/37 (59%), Positives = 30/37 (81%)
Frame = +1 / +2
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
T PLD+SWH LGLGYNP+++ +I A V+H+NGN+K
Sbjct: 344 THPLDKSWHVLGLGYNPSIDRSEIDSAAVVHYNGNMK 454
Score = 65.7 bits (137), Expect(4) = 4e-039
Identities = 21/32 (65%), Positives = 27/32 (84%)
Frame = +2 / +2
Query: 2 HACGWAYGMNMFDLSGWRKQNITEVYHTWQKL 97
+ACGWAYGMN+FDL W+K++IT +YH WQ L
Sbjct: 47 NACGWAYGMNIFDLREWKKKDITGIYHKWQNL 142
Score = 46.4 bits (95), Expect(4) = 4e-039
Identities = 12/30 (40%), Positives = 22/30 (73%)
Frame = +2 / +2
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECNIN 370
WLE+ + KYR YW+ ++ YD +++ CN++
Sbjct: 458 WLELAMTKYRPYWTKYIKYDHPYIRGCNLS 547
Score = 41.8 bits (85), Expect(4) = 4e-039
Identities = 15/20 (75%), Positives = 18/20 (90%)
Frame = +2 / +2
Query: 98 NENRLLWKLGTLPAGLVTFW 157
NE+R LWKLGTLP GL+TF+
Sbjct: 278 NEDRALWKLGTLPPGLLTFY 337
>gb|CN140420.1|CN140420 OX1_36_B10.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_36_B10_A002 3', mRNA sequence
Length = 836
Score = 105 bits (225), Expect(2) = 1e-036
Identities = 37/58 (63%), Positives = 44/58 (75%)
Frame = +2 / +3
Query: 2 HACGWAYGMNMFDLSGWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRIRSL 175
+ACGWAYGMN FDL WR++ TE YH WQ NENR LWKLGTLP GL+TF++ + L
Sbjct: 282 NACGWAYGMNFFDLDSWRREKCTEQYHYWQNQNENRTLWKLGTLPPGLITFYSTTKPL 455
Score = 72.5 bits (152), Expect(2) = 2e-021
Identities = 30/50 (60%), Positives = 33/50 (66%)
Frame = -3 / -2
Query: 153 KVTRPAGRVPSFHNSLFSFNFCQVW*TSVMFCFLHPDKSNMFMPYAQPQA 4
KV +P G VPSFHN FSF FCQ W SV F L +S F+PYAQPQA
Sbjct: 433 KVIKPGGSVPSFHNVRFSF*FCQ*WYCSVHFSLLQESRSKKFIPYAQPQA 284
Score = 68.4 bits (143), Expect(2) = 1e-036
Identities = 23/37 (62%), Positives = 32/37 (86%)
Frame = +1 / +3
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
T PL++SWH LGLGYNP+++ ++IR A V+HFNGN+K
Sbjct: 444 TKPLEKSWHVLGLGYNPSISMEEIRNAAVVHFNGNMK 554
Score = 51.0 bits (105), Expect(2) = 2e-021
Identities = 24/49 (48%), Positives = 27/49 (55%)
Frame = -1 / -2
Query: 311 CGIWAIQSQARSFKFPLKWMTVARLISFSLTFGLYPSPS*CHERSRGNV 165
C W I ++ F PLK T A LIS L GLYPSP C + SRG V
Sbjct: 589 CLNWFIPMSSQGFMLPLKCTTAAFLISSMLMLGLYPSPRTCQDFSRGFV 443
>gb|BG101797.1|BG101797 RHIZ2_22_E09.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 591
Score = 79.0 bits (166), Expect(3) = 3e-036
Identities = 27/41 (65%), Positives = 34/41 (82%)
Frame = +2 / +3
Query: 35 FDLSGWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFW 157
FDL W+ ++IT +YH WQ +NENRLLWKLGTLP GL+TF+
Sbjct: 3 FDLEEWKNKDITGIYHKWQNMNENRLLWKLGTLPPGLLTFY 125
Score = 66.6 bits (139), Expect(3) = 3e-036
Identities = 23/37 (62%), Positives = 28/37 (75%)
Frame = +1 / +3
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
T PLD+SWH LGLGYNP + +I A VIH+NGN+K
Sbjct: 132 THPLDKSWHVLGLGYNPTIERSEIDNAAVIHYNGNMK 242
Score = 46.0 bits (94), Expect(3) = 3e-036
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +2 / +3
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECNIN 370
WLEI + KYR YW+ ++NY+ ++ C I+
Sbjct: 246 WLEIAMTKYRPYWTKYINYEHPYIHGCKIS 335
>gb|CN127460.1|CN127460 RHOH1_23_D06.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_23_D06_A002 3', mRNA sequence
Length = 814
Score = 100 bits (212), Expect(3) = 6e-036
Identities = 34/58 (58%), Positives = 44/58 (75%)
Frame = +2 / +1
Query: 2 HACGWAYGMNMFDLSGWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRIRSL 175
H CGWA+GMN+FDL WRK+N T +YH WQ+ N + LLW+ GTLPAGL+TF+ + L
Sbjct: 112 HTCGWAFGMNIFDLIAWRKENATSLYHYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPL 285
Score = 57.4 bits (119), Expect(3) = 6e-036
Identities = 19/35 (54%), Positives = 28/35 (80%)
Frame = +1 / +1
Query: 172 PLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
PLDR WH LGLGY+ +++++ I A V+H+NGN+K
Sbjct: 280 PLDRRWHVLGLGYDVDIDDRLIESAAVVHYNGNMK 384
Score = 32.7 bits (65), Expect(3) = 6e-036
Identities = 8/30 (26%), Positives = 19/30 (63%)
Frame = +2 / +1
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECNIN 370
WL++ + +Y+ W +VN +++EC ++
Sbjct: 388 WLKLAIRRYKYIWERYVNISHPYVRECMLH 477
>gb|CX612893.1|CX612893 GABR1_5_C04.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_5_C04_A002 3', mRNA sequence
Length = 762
Score = 100 bits (212), Expect(3) = 6e-036
Identities = 34/58 (58%), Positives = 44/58 (75%)
Frame = +2 / +1
Query: 2 HACGWAYGMNMFDLSGWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRIRSL 175
H CGWA+GMN+FDL WRK+N T +YH WQ+ N + LLW+ GTLPAGL+TF+ + L
Sbjct: 70 HTCGWAFGMNIFDLIAWRKENATSLYHYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPL 243
Score = 57.4 bits (119), Expect(3) = 6e-036
Identities = 19/35 (54%), Positives = 28/35 (80%)
Frame = +1 / +1
Query: 172 PLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
PLDR WH LGLGY+ +++++ I A V+H+NGN+K
Sbjct: 238 PLDRRWHVLGLGYDVDIDDRLIESAAVVHYNGNMK 342
Score = 32.7 bits (65), Expect(3) = 6e-036
Identities = 8/30 (26%), Positives = 19/30 (63%)
Frame = +2 / +1
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECNIN 370
WL++ + +Y+ W +VN +++EC ++
Sbjct: 346 WLKLAIRRYKYIWERYVNISHPYVRECMLH 435
>gb|CD234655.1|CD234655 SS1_17_C07.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_17_C07_A012 3', mRNA sequence
Length = 683
Score = 89.5 bits (189), Expect(3) = 8e-033
Identities = 31/54 (57%), Positives = 41/54 (75%)
Frame = +2 / +3
Query: 14 WAYGMNMFDLSGWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRIRSL 175
WA+GMN+FDL WRK+N T +YH WQ+ N + LLW+ GTLPAGL+TF+ + L
Sbjct: 3 WAFGMNIFDLIAWRKENATSLYHYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPL 164
Score = 57.4 bits (119), Expect(3) = 8e-033
Identities = 19/35 (54%), Positives = 28/35 (80%)
Frame = +1 / +3
Query: 172 PLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
PLDR WH LGLGY+ +++++ I A V+H+NGN+K
Sbjct: 159 PLDRRWHVLGLGYDVDIDDRLIESAAVVHYNGNMK 263
Score = 32.7 bits (65), Expect(3) = 8e-033
Identities = 8/30 (26%), Positives = 19/30 (63%)
Frame = +2 / +3
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECNIN 370
WL++ + +Y+ W +VN +++EC ++
Sbjct: 267 WLKLAIRRYKYIWERYVNISHPYVRECMLH 356
>gb|BI139893.1|BI139893 IP1_47_A12.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 598
Score = 61.1 bits (127), Expect(4) = 3e-028
Identities = 20/31 (64%), Positives = 23/31 (74%)
Frame = +2 / +2
Query: 8 CGWAYGMNMFDLSGWRKQNITEVYHTWQKLN 100
C WAYGMN+FDL+ WRK NI + YH W K N
Sbjct: 197 CAWAYGMNIFDLAAWRKTNIRDTYHFWLKEN 289
Score = 52.8 bits (109), Expect(4) = 3e-028
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = +1 / +2
Query: 163 HTFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
H +D SWH LGLGY + + +RRA VIH+NG K
Sbjct: 356 HVHGIDPSWHLLGLGYQDKTDIESVRRAAVIHYNGQCK 469
Score = 37.7 bits (76), Expect(4) = 3e-028
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2 / +2
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECNI 367
WL+I + +W+ HVNY F++ C+I
Sbjct: 473 WLDIAFKNLQPFWTKHVNYSXDFVRNCHI 559
Score = 29.9 bits (59), Expect(4) = 3e-028
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +2 / +2
Query: 89 QKLNENRLLWKLGTLPAGLVTFWNRIRSL 175
+ L LWK GTLP L+ F + +
Sbjct: 284 ENLKSGLTLWKFGTLPPALIAFRGHVHGI 370
>gb|BM331533.1|BM331533 PIC1_72_D10.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 596
Score = 61.1 bits (127), Expect(3) = 5e-027
Identities = 21/29 (72%), Positives = 25/29 (86%)
Frame = +2 / +2
Query: 74 VYHTWQKLNENRLLWKLGTLPAGLVTFWN 160
+YH WQ LNE+R LWKLGTLP GL+TF+N
Sbjct: 2 IYHYWQDLNEDRKLWKLGTLPPGLITFYN 88
Score = 60.2 bits (125), Expect(3) = 5e-027
Identities = 21/37 (56%), Positives = 29/37 (78%)
Frame = +1 / +2
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
T+PL+R+WH LGLGY+P V+ +I A V+H+NGN K
Sbjct: 92 TYPLNRTWHVLGLGYDPAVDIAEIDNAAVVHYNGNYK 202
Score = 38.6 bits (78), Expect(3) = 5e-027
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2 / +2
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQEC 361
WL++ + KY+ YWS +V+ D +Q C
Sbjct: 206 WLDLAISKYKTYWSKYVDVDNSHVQHC 286
>gb|CW285991.1|CW285991 104_763_11410641_116_35511_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11410641, DNA
sequence
Length = 612
Score = 66.6 bits (139), Expect(3) = 1e-026
Identities = 23/37 (62%), Positives = 28/37 (75%)
Frame = +1 / +2
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
T PLD+SWH LGLGYNP + +I A VIH+NGN+K
Sbjct: 128 THPLDKSWHVLGLGYNPTIERSEIDNAAVIHYNGNMK 238
Score = 46.4 bits (95), Expect(3) = 1e-026
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +2 / +2
Query: 98 NENRLLWKLGTLPAGLVTFW 157
NENRLLWKLGTLP GL+TF+
Sbjct: 62 NENRLLWKLGTLPPGLLTFY 121
Score = 46.0 bits (94), Expect(3) = 1e-026
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +2 / +2
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECNIN 370
WLEI + KYR YW+ ++NY+ ++ C I+
Sbjct: 242 WLEIAMTKYRPYWTKYINYEHPYIHGCKIS 331
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 825,537,517
Number of Sequences: 832831
Number of extensions: 11402467
Number of successful extensions: 72163
Number of sequences better than 1.0e-020: 18
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 20792394350
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)